Query gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:52:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780963.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d8ja_ a.4.5.18 (A:) The cent 23.8 20 0.0014 14.5 2.1 30 29-58 6-35 (81)
2 d1s58a_ b.121.5.2 (A:) Parvovi 22.1 6.7 0.00049 17.1 -0.6 16 65-80 202-217 (536)
3 d1vlua_ c.82.1.1 (A:) Gamma-gl 17.2 22 0.0016 14.2 1.1 10 46-55 85-94 (436)
4 d1qh4a2 d.128.1.2 (A:103-381) 4.7 56 0.004 11.9 -0.7 25 60-84 110-134 (279)
5 d2gykb1 d.4.1.1 (B:4-133) DNas 4.7 89 0.0065 10.7 1.5 17 121-137 6-22 (130)
6 d1tuaa2 d.51.1.1 (A:85-188) Hy 4.6 91 0.0066 10.7 1.7 13 35-47 92-104 (104)
7 d1p6pa_ b.60.1.2 (A:) Liver ba 4.5 80 0.0058 11.0 -0.0 18 156-173 105-122 (125)
8 d1ifca_ b.60.1.2 (A:) Intestin 4.5 81 0.0059 11.0 -0.0 19 155-173 110-128 (131)
9 d1fnla2 b.1.1.4 (A:87-175) Fc 4.5 93 0.0068 10.6 2.5 21 148-168 2-22 (89)
10 d1kfia3 c.84.1.1 (A:324-443) E 4.4 94 0.0068 10.6 1.4 21 116-139 39-59 (120)
No 1
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.78 E-value=20 Score=14.46 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.6
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 010089999999998663442035732443
Q gi|254780963|r 29 LKVNFGLMRRVMIDLWSREISSYRTPLSLD 58 (215)
Q Consensus 29 lkvnfglmrrvmidlwsreissyrtplsld 58 (215)
-+.+||.|.++.--.-.|......-||+||
T Consensus 6 s~~~FgvLaKIV~~MK~RHq~g~~hPLtLe 35 (81)
T d1d8ja_ 6 SGYKFGVLAKIVNYMKTRHQRGDTHPLTLD 35 (81)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTCCSCBCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 663016999999999988715898874599
No 2
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]}
Probab=22.11 E-value=6.7 Score=17.15 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.8
Q ss_pred EEEEEEEEEEEEECHH
Q ss_conf 8886410367763157
Q gi|254780963|r 65 VYLDTYKSFSINLGFE 80 (215)
Q Consensus 65 vyldtyksfsinlgfe 80 (215)
--|.|=.+|+.-.-||
T Consensus 202 qmLRTGd~f~~~y~F~ 217 (536)
T d1s58a_ 202 QLLGTGGTATMSYKFP 217 (536)
T ss_dssp BCCCSSCCEEEEEECC
T ss_pred HHHCCCCCCEEEEECC
T ss_conf 8500687515776668
No 3
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.22 E-value=22 Score=14.19 Aligned_cols=10 Identities=10% Similarity=0.654 Sum_probs=4.3
Q ss_pred HHHHHCCCCE
Q ss_conf 3442035732
Q gi|254780963|r 46 REISSYRTPL 55 (215)
Q Consensus 46 reissyrtpl 55 (215)
|++.+...|.
T Consensus 85 ~~i~~~~dpv 94 (436)
T d1vlua_ 85 KDVAELEDPV 94 (436)
T ss_dssp HHHHHSCCSS
T ss_pred HHHHHCCCCC
T ss_conf 9998365435
No 4
>d1qh4a2 d.128.1.2 (A:103-381) Creatine kinase, C-terminal domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Probab=4.74 E-value=56 Score=11.89 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=16.5
Q ss_pred CCCEEEEEEEEEEEEEEECHHHHHH
Q ss_conf 2201588864103677631577752
Q gi|254780963|r 60 DYKHRVYLDTYKSFSINLGFETFNE 84 (215)
Q Consensus 60 dykhrvyldtyksfsinlgfetfne 84 (215)
....-++++.-++|+|-...|-.-.
T Consensus 110 p~~rgv~~n~d~~~~i~VNeEDHLR 134 (279)
T d1qh4a2 110 PDARGIWHNDNKTFLVWINEEDHLR 134 (279)
T ss_dssp TTTCEEEEETTSSEEEEESSSSSEE
T ss_pred CCCCEEEECCCCEEEEEECCCCEEE
T ss_conf 4673289869971899985642589
No 5
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=4.71 E-value=89 Score=10.72 Aligned_cols=17 Identities=41% Similarity=0.804 Sum_probs=8.1
Q ss_pred EEEEECCCCCCCHHHHH
Q ss_conf 13530366752000012
Q gi|254780963|r 121 GVVASTGFNTGDKWLGA 137 (215)
Q Consensus 121 gvvastgfntgdkwlga 137 (215)
|+|...|-..|+.||++
T Consensus 6 G~vtG~G~~v~~~Wl~~ 22 (130)
T d2gykb1 6 GKATGKGKPVGDKWLDD 22 (130)
T ss_dssp EECBCCCBCCCTTGGGG
T ss_pred CEEECCCEECCCHHHHH
T ss_conf 50652581774333565
No 6
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=4.58 E-value=91 Score=10.66 Aligned_cols=13 Identities=38% Similarity=0.946 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999986634
Q gi|254780963|r 35 LMRRVMIDLWSRE 47 (215)
Q Consensus 35 lmrrvmidlwsre 47 (215)
+.++.+..+|+||
T Consensus 92 lk~~~~~~~w~~~ 104 (104)
T d1tuaa2 92 IKRRERLKMWARE 104 (104)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9877998753129
No 7
>d1p6pa_ b.60.1.2 (A:) Liver basic fatty acid binding protein, LB_FABP {Argentine common toad (Bufo arenarum) [TaxId: 38577]}
Probab=4.49 E-value=80 Score=10.99 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=7.3
Q ss_pred CEEEEECCCCEEEEEEEE
Q ss_conf 300110567679998630
Q gi|254780963|r 156 DFAIRHASSDVVVCMRYQ 173 (215)
Q Consensus 156 dfairhassdvvvcmryq 173 (215)
|--+-..+.+-|+|-|+-
T Consensus 105 ~~l~~t~t~~~v~~~R~y 122 (125)
T d1p6pa_ 105 DEMVEKITIGSSTLTRKS 122 (125)
T ss_dssp TEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEECCEEEEEEE
T ss_conf 999999999999999999
No 8
>d1ifca_ b.60.1.2 (A:) Intestinal fatty acid binding protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.46 E-value=81 Score=10.97 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=7.9
Q ss_pred CCEEEEECCCCEEEEEEEE
Q ss_conf 1300110567679998630
Q gi|254780963|r 155 SDFAIRHASSDVVVCMRYQ 173 (215)
Q Consensus 155 sdfairhassdvvvcmryq 173 (215)
.|--+-..+.+-|+|-|+-
T Consensus 110 ~~~lv~t~t~~~v~~~R~y 128 (131)
T d1ifca_ 110 GNELIQTYTYEGVEAKRIF 128 (131)
T ss_dssp TTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEE
T ss_conf 9999999999999999999
No 9
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=4.45 E-value=93 Score=10.61 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCEEEEECCEEEEECCCCEEE
Q ss_conf 624777313001105676799
Q gi|254780963|r 148 TPWLILQSDFAIRHASSDVVV 168 (215)
Q Consensus 148 tpwlilqsdfairhassdvvv 168 (215)
|.||+||..-.+-.....+..
T Consensus 2 ~~~Lilq~p~~~v~eG~~v~L 22 (89)
T d1fnla2 2 IGWLLLQAPRWVFKEEDPIHL 22 (89)
T ss_dssp CSSEEEECSCSEEETTCCEEE
T ss_pred CCEEEEECCCCEECCCCEEEE
T ss_conf 567999799786806981999
No 10
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=4.42 E-value=94 Score=10.59 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHCEEEEEECCCCCCCHHHHHHC
Q ss_conf 342501353036675200001210
Q gi|254780963|r 116 KKIGVGVVASTGFNTGDKWLGAEM 139 (215)
Q Consensus 116 kkigvgvvastgfntgdkwlgaem 139 (215)
++.|+.++-+ .+|+||....|
T Consensus 39 ~~~g~~~~~t---~vG~k~I~~~m 59 (120)
T d1kfia3 39 AKNGIKLFET---PTGWKFFGNLM 59 (120)
T ss_dssp HHHTCCEEEE---CSSTHHHHHHH
T ss_pred HHCCCEEEEE---CCCCHHHHHHC
T ss_conf 8427358980---47335565210
Done!