BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040640|gb|ACT57436.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 215

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60
           MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD
Sbjct: 1   MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60

Query: 61  YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120
           YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV
Sbjct: 61  YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120

Query: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180
           GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD
Sbjct: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180

Query: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215
           SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF
Sbjct: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215


>gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040831|gb|ACT57627.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 65

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 148 TPWLILQSDFAIRHASSDVVVCMRYQAKFLITDSIGILYRNVSAVSAAVDKNI----GLG 203
           T WL LQ DF +           R Q + LITD       N+SA+ ++ DKNI      G
Sbjct: 2   TSWLKLQRDFGVVLIGDKAFNTYRSQLRILITD-------NLSALISS-DKNITESGKEG 53

Query: 204 VTKIGLDYVYKF 215
           + K+ L YVY F
Sbjct: 54  IVKMDLSYVYTF 65


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040640|gb|ACT57436.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 215

 Score =  440 bits (1132), Expect = e-122,   Method: Composition-based stats.
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60
           MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD
Sbjct: 1   MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60

Query: 61  YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120
           YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV
Sbjct: 61  YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120

Query: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180
           GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD
Sbjct: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180

Query: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215
           SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF
Sbjct: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215


>gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040831|gb|ACT57627.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 65

 Score = 36.1 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 148 TPWLILQSDFAIRHASSDVVVCMRYQAKFLITDSIGILYRNVSAVSAAVDKNI----GLG 203
           T WL LQ DF +           R Q + LITD       N+SA+ ++ DKNI      G
Sbjct: 2   TSWLKLQRDFGVVLIGDKAFNTYRSQLRILITD-------NLSALISS-DKNITESGKEG 53

Query: 204 VTKIGLDYVYKF 215
           + K+ L YVY F
Sbjct: 54  IVKMDLSYVYTF 65


>gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1]
 gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1]
          Length = 301

 Score = 35.7 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 2  VRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLDY 61
          +R F   I++  +F G+ S+  EH++ L++  G      +D+ + +IS Y   LSLD  Y
Sbjct: 16 IRRFGQFIWLTRSFRGDLSKKWEHKELLRLETG------VDVSASDISRYLEFLSLDRQY 69

Query: 62 KHRVYLDTYKSFSINLGFETFNEIV--NP 88
              Y     S S    F    E+V  NP
Sbjct: 70 HATTYNRILSSLSSFYRFLLMQEVVETNP 98


>gi|317402017|gb|EFV82616.1| diacylglycerol kinase [Achromobacter xylosoxidans C54]
          Length = 330

 Score = 35.4 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 9   IFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTP--LSLDLDYKHRV 65
           +F++   +G + Q LE  +  K  FG  R  ++ LWS  ++  R P  LSL LDY+ RV
Sbjct: 155 LFLVNASLGLYPQLLEDREAYKQRFG--RSRLVALWSGLVTLMRAPRQLSLRLDYEGRV 211


>gi|156974061|ref|YP_001444968.1| hypothetical protein VIBHAR_01772 [Vibrio harveyi ATCC BAA-1116]
 gi|156525655|gb|ABU70741.1| hypothetical protein VIBHAR_01772 [Vibrio harveyi ATCC BAA-1116]
          Length = 461

 Score = 35.4 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 41  IDLWSREISSYRTPLSLDLDYKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLV----- 95
           +D+W RE SSY   L+     K   YL   K   IN+ F   +EI+    +  ++     
Sbjct: 134 LDIWVRESSSYHKSLT-----KANNYLSIKKKLLINIMF--LDEIIQDYEILEMISAGFI 186

Query: 96  -LPVLSMHKT--WNNNFDDSYFFKKIGV 120
            + VL  HKT  W N F D  F  ++ V
Sbjct: 187 DVTVLDQHKTGMWGNIFPDVIFHNQLTV 214


>gi|118398810|ref|XP_001031732.1| hypothetical protein TTHERM_00756030 [Tetrahymena thermophila]
 gi|89286065|gb|EAR84069.1| hypothetical protein TTHERM_00756030 [Tetrahymena thermophila SB210]
          Length = 3732

 Score = 34.6 bits (78), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 29   LKVNFGLMRRVMIDLWSREISSYRTPLSLDLDYKHRVYLDTYK-SFSINL-------GFE 80
            +K  FGL  + ++ +++  +S        +LD ++ ++   Y  S+ IN+         +
Sbjct: 1937 IKKGFGL--QSVLKVYNISLSEIAEKRDHNLDIRNVIFKRKYTYSYDINIIAVIDKVSLQ 1994

Query: 81   TFNEI--VNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGVGVVASTGF 128
            T   I  +NPT + +++   L M   WN+ + D  F++KI +  ++S  F
Sbjct: 1995 TIRTIKCLNPTILNIIISEKLDMIFIWNDYYKDKVFYQKIAIFNISSGLF 2044


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.326    0.141    0.428 

Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,093,339,261
Number of Sequences: 14124377
Number of extensions: 251840420
Number of successful extensions: 663213
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 663196
Number of HSP's gapped (non-prelim): 121
length of query: 215
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 82
effective length of database: 2,964,251,489
effective search space: 243068622098
effective search space used: 243068622098
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 78 (34.5 bits)