RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>gnl|CDD|107342 cd06347, PBP1_ABC_ligand_binding_like_12, Type I periplasmic
           ligand-binding domain of uncharacterized ABC (Atpase
           Binding Cassette)-type active transport systems that are
           predicted to be involved in uptake of amino acids,
           peptides, or inorganic ions.  This subgroup includes the
           type I periplasmic ligand-binding domain of
           uncharacterized ABC (Atpase Binding Cassette)-type
           active transport systems that are predicted to be
           involved in uptake of amino acids, peptides, or
           inorganic ions. This subgroup has high sequence
           similarity to members of the family of hydrophobic amino
           acid transporters (HAAT), such as
           leucine/isoleucine/valine binding protein (LIVBP);
           however its ligand specificity has not been determined
           experimentally.
          Length = 334

 Score = 28.3 bits (64), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 115 FKKIGVGVVASTGFNTGDK 133
           FKK+G  +VA   FN GD 
Sbjct: 160 FKKLGGEIVAEETFNAGDT 178


>gnl|CDD|146031 pfam03198, Glyco_hydro_72, Glycolipid anchored surface protein
           (GAS1). 
          Length = 313

 Score = 27.7 bits (62), Expect = 2.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 39  VMIDLWSREISSYRTPLSLDLDYKHRVY--LDTYKSFSINLGFETFNEIVNPTT 90
           V++DL +   S  R   S ++DY  R +  +D +K++   LGF   NE++N  +
Sbjct: 96  VILDLNTPRNSINRADPSWNVDYLERYFKVIDAFKNYPNVLGFFAGNEVINDAS 149


>gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional.
          Length = 1832

 Score = 27.0 bits (60), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 88  PTTMRVLVLPVLSMHKTWNNN---FD 110
           P T+ VL LP L  H  WNN+   FD
Sbjct: 83  PHTITVLALPYLLFHFFWNNHKHFFD 108


>gnl|CDD|38076 KOG2865, KOG2865, KOG2865, NADH:ubiquinone oxidoreductase,
           NDUFA9/39kDa subunit [Energy production and conversion].
          Length = 391

 Score = 26.1 bits (57), Expect = 7.6
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 18  EFSQALEHEDELKVNFGL-MRRVMIDLWSREISSYRTPLSLDLDYKHRVYLDTYKSFSIN 76
           +    +  E    V   + + + M       I  +  P  L+ D   R+ +         
Sbjct: 287 DIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQIERLTVTDLVLTGA- 345

Query: 77  LGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSY 113
              E     V  T + +  +  L  ++     F    
Sbjct: 346 PTLEDLG--VVLTKLELYPVEFLRQYRKGGRYFGAEV 380


>gnl|CDD|32375 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 555

 Score = 26.0 bits (57), Expect = 8.8
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 100 SMHKTWNNNFDD--SYFFKKIGVGVVASTGFN 129
           ++ +  N  +      F ++ GVGV+ +T FN
Sbjct: 488 TVRRDANPRYYGLLRAFKERTGVGVLLNTSFN 519


>gnl|CDD|31073 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis,
           outer membrane].
          Length = 594

 Score = 25.7 bits (56), Expect = 9.2
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 54  PLSLDLDYKHRVYLDTYKSFSINLGFE 80
           P+  D+        D    F I +G E
Sbjct: 567 PIRFDIAVPLEDKDDKKFQFYIGIGQE 593


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,734,247
Number of extensions: 145427
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 18
Length of query: 215
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,318,927
Effective search space: 539865875
Effective search space used: 539865875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)