Query gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 352 No_of_seqs 132 out of 1350 Neff 7.5 Searched_HMMs 39220 Date Mon May 30 02:58:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780964.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK07209 ribonucleotide-diphos 100.0 0 0 754.3 35.3 349 4-352 43-391 (391) 2 PRK12759 bifunctional gluaredo 100.0 0 0 644.9 29.9 308 30-352 94-405 (410) 3 PTZ00211 ribonucleotide reduct 100.0 0 0 619.4 33.6 310 16-351 6-318 (330) 4 COG0208 NrdF Ribonucleotide re 100.0 0 0 617.5 34.4 334 8-350 2-340 (348) 5 PRK09101 nrdB ribonucleotide-d 100.0 0 0 614.4 34.0 335 9-348 4-362 (376) 6 PRK09614 nrdF ribonucleotide-d 100.0 0 0 598.0 35.0 314 21-352 2-320 (325) 7 PRK13966 nrdF2 ribonucleotide- 100.0 0 0 562.8 32.9 296 33-349 15-315 (324) 8 PRK13965 ribonucleotide-diphos 100.0 0 0 548.0 32.4 299 33-352 28-332 (337) 9 PRK13967 nrdF1 ribonucleotide- 100.0 0 0 542.5 32.3 299 33-352 13-317 (322) 10 cd01049 RNRR2 Ribonucleotide R 100.0 0 0 536.5 33.7 284 32-327 1-287 (288) 11 pfam00268 Ribonuc_red_sm Ribon 100.0 0 0 525.2 32.4 275 22-321 1-278 (281) 12 KOG1567 consensus 100.0 0 0 499.4 21.3 310 15-349 18-330 (344) 13 cd07911 RNRR2_Rv0233_like Ribo 100.0 0 0 384.9 28.4 253 43-311 10-268 (280) 14 PRK08326 ribonucleotide-diphos 100.0 0 0 369.5 26.0 293 14-326 6-307 (318) 15 cd01054 consensus 98.1 0.0011 2.9E-08 44.3 23.0 193 72-283 79-280 (296) 16 pfam02332 Phenol_Hydrox Methan 98.1 0.00084 2.1E-08 45.2 16.0 160 73-250 66-232 (233) 17 cd01057 AAMH_A Aromatic and Al 98.0 0.0017 4.4E-08 43.1 19.3 229 70-312 67-301 (465) 18 pfam11583 AurF P-aminobenzoate 97.9 0.0025 6.3E-08 42.0 17.9 214 50-289 38-260 (295) 19 pfam11266 DUF3066 Protein of u 97.9 0.0022 5.7E-08 42.3 14.9 202 75-311 4-207 (219) 20 TIGR02029 AcsF magnesium-proto 96.6 0.007 1.8E-07 38.9 6.1 60 182-246 77-138 (344) 21 cd00657 Ferritin_like Ferritin 96.0 0.13 3.3E-06 30.2 10.2 125 86-241 3-129 (130) 22 cd01050 Acyl_ACP_Desat Acyl AC 96.0 0.078 2E-06 31.8 8.6 113 112-252 94-212 (297) 23 PRK13778 paaA phenylacetate-Co 95.9 0.15 3.8E-06 29.8 16.0 224 74-332 36-286 (316) 24 cd01058 AAMH_B Aromatic and Al 95.8 0.17 4.3E-06 29.4 21.0 215 44-281 64-288 (304) 25 COG3396 Uncharacterized conser 95.7 0.18 4.6E-06 29.2 20.1 225 74-327 12-254 (265) 26 cd07911 RNRR2_Rv0233_like Ribo 95.6 0.028 7.1E-07 34.8 5.2 61 255-315 209-269 (280) 27 PRK13654 magnesium-protoporphy 95.5 0.045 1.2E-06 33.4 6.0 211 67-319 70-290 (351) 28 cd01047 ACSF Aerobic Cyclase S 95.2 0.069 1.8E-06 32.1 6.2 209 73-319 55-272 (323) 29 CHL00185 ycf59 magnesium-proto 95.0 0.091 2.3E-06 31.3 6.2 212 67-319 66-286 (349) 30 pfam04305 DUF455 Protein of un 92.8 0.76 1.9E-05 24.9 10.9 102 118-249 102-209 (250) 31 pfam03405 FA_desaturase_2 Fatt 85.9 2.6 6.5E-05 21.3 9.8 109 113-252 100-218 (330) 32 cd07908 Mn_catalase_like Manga 82.1 3.7 9.3E-05 20.3 10.3 134 83-240 16-152 (154) 33 cd01051 Mn_catalase Manganese 81.7 3.5 9E-05 20.4 4.9 129 83-244 23-154 (156) 34 pfam05138 PaaA_PaaC Phenylacet 81.6 3.8 9.7E-05 20.2 22.0 193 84-311 5-210 (248) 35 pfam02915 Rubrerythrin Rubrery 77.5 5.1 0.00013 19.3 11.0 133 85-241 2-136 (137) 36 COG1633 Uncharacterized conser 74.3 6.1 0.00016 18.7 13.1 147 82-247 25-171 (176) 37 TIGR00289 TIGR00289 conserved 73.8 3 7.7E-05 20.8 2.7 77 256-344 70-147 (227) 38 pfam10118 Metal_hydrol Predict 73.5 6.4 0.00016 18.6 14.9 140 79-247 25-174 (251) 39 pfam05067 Mn_catalase Manganes 70.4 7.5 0.00019 18.1 4.8 33 108-140 49-81 (272) 40 COG2074 2-phosphoglycerate kin 51.5 5.7 0.00015 18.9 0.7 107 192-304 187-293 (299) 41 TIGR00956 3a01205 Pleiotropic 51.2 16 0.00041 15.9 3.3 241 58-345 816-1111(1466) 42 COG4902 Uncharacterized protei 48.2 18 0.00045 15.6 5.3 80 222-301 78-162 (189) 43 pfam11251 DUF3050 Protein of u 47.9 18 0.00046 15.5 9.5 171 84-275 27-228 (232) 44 TIGR02254 YjjG/YfnB HAD superf 47.8 18 0.00045 15.6 2.7 81 226-314 61-147 (233) 45 COG3546 Mn-containing catalase 47.2 18 0.00047 15.5 3.4 31 110-140 51-81 (277) 46 PTZ00301 uridine kinase; Provi 44.1 18 0.00046 15.5 2.3 95 194-301 110-208 (210) 47 pfam09968 DUF2202 Uncharacteri 43.9 21 0.00052 15.1 7.4 81 221-301 28-113 (162) 48 cd01055 Nonheme_Ferritin nonhe 42.2 22 0.00056 14.9 8.2 36 206-242 24-59 (156) 49 COG2833 Uncharacterized protei 41.1 23 0.00058 14.8 7.4 106 120-249 115-220 (268) 50 PRK08233 hypothetical protein; 36.8 26 0.00067 14.4 3.2 93 194-302 81-177 (182) 51 cd01044 Ferritin_CCC1_N Ferrit 36.5 26 0.00068 14.4 11.1 40 102-141 18-57 (125) 52 cd01045 Ferritin_like_AB Uncha 32.5 31 0.00078 13.9 12.5 38 102-139 18-55 (139) 53 KOG1883 consensus 32.4 31 0.00078 13.9 9.4 94 116-242 853-950 (1517) 54 TIGR00988 hip integration host 32.1 31 0.00079 13.9 4.0 33 239-271 4-36 (94) 55 TIGR02773 addB_Gpos ATP-depend 31.1 32 0.00082 13.8 2.9 157 129-304 728-905 (1192) 56 TIGR01502 B_methylAsp_ase meth 30.2 33 0.00085 13.7 2.1 55 257-315 177-237 (414) 57 pfam08671 SinI Anti-repressor 29.2 24 0.00062 14.6 1.0 27 272-298 2-28 (30) 58 pfam10603 consensus 28.1 36 0.00092 13.5 4.8 40 262-302 2-41 (55) 59 TIGR02156 PA_CoA_Oxy1 phenylac 27.8 36 0.00093 13.4 5.7 227 65-332 13-275 (297) 60 TIGR00601 rad23 UV excision re 27.5 8.2 0.00021 17.9 -1.7 93 217-313 309-426 (453) 61 pfam08899 DUF1844 Domain of un 26.6 38 0.00098 13.3 2.9 16 71-86 52-67 (74) 62 pfam06556 ASFV_p27 IAP-like pr 24.9 32 0.00082 13.8 1.0 10 223-232 100-109 (131) 63 KOG0011 consensus 24.4 35 0.00089 13.5 1.1 86 216-312 221-313 (340) 64 cd02023 UMPK Uridine monophosp 24.2 42 0.0011 13.0 2.7 41 257-297 155-196 (198) 65 pfam02007 MtrH Tetrahydrometha 22.2 46 0.0012 12.7 3.5 42 81-129 78-119 (296) 66 TIGR00693 thiE thiamine-phosph 20.6 18 0.00046 15.5 -1.0 46 270-315 92-141 (210) 67 pfam05756 S-antigen S-antigen 20.0 51 0.0013 12.4 2.1 30 198-227 6-35 (310) No 1 >PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Probab=100.00 E-value=0 Score=754.29 Aligned_cols=349 Identities=68% Similarity=1.193 Sum_probs=341.3 Q ss_pred CCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 43641000654578813374868899800017861679999999999457987036747989985202689989999999 Q gi|254780964|r 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 (352) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~ 83 (352) .++...+..+..|++++++||||+++|+++|.||||||+|++|+++.+|||.|+||||++|++||++.++||++||++++ T Consensus 43 ~~~~~~~~~~~~r~~~~~k~~in~~~d~nql~P~kY~WA~e~y~~~~anhW~PeEV~m~~Di~dWk~~~~Ltd~Er~~i~ 122 (391) T PRK07209 43 ATGLEELEGGAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVK 122 (391) T ss_pred CCCHHHHHCCCCCCCCCCCCEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 55366764347766745210022656330038878789999999997768975654777789985265789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986433334556664013305779999999999999977899999999714646999999972001898778899 Q gi|254780964|r 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 (352) Q Consensus 84 ~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~ 163 (352) ++|+||+++|++|++|+...+.+++++||+++|+++|+++|+||+.||++|++|+++|++|+|++++++|+|++|++|+. T Consensus 123 ~iL~FFa~sDsiV~nNl~~~~~~~it~PE~r~~l~rQa~eEaIH~~aYs~lleslg~d~~Eif~a~~~ipsi~~K~df~~ 202 (391) T PRK07209 123 RNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLL 202 (391) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHH T ss_conf 99999867789998509999886569699999999999999999999999998118988999999952788998999999 Q ss_pred HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99974012101026777401499999999740001444114788998997598012899999998566666999999999 Q gi|254780964|r 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 (352) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~ 243 (352) ++.+.+.++.+.+++.++++.|++++++|++++|||+|||||+++|+|+|+|||+|+|++++||+|||++|+.|++.+|+ T Consensus 203 ~~~~~l~d~~f~~~t~e~~~~f~~~Li~F~~i~EGifFysgFa~il~l~RrgkM~G~~~~~~~i~RDEslH~~f~~~li~ 282 (391) T PRK07209 203 PFTRALTDPNFKTGTPEADQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGAAEQYQYILRDESMHLNFGIDLIN 282 (391) T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99998625454568802599999999999999879999999999999875145757587764632027889999999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 76553754220678999999999999876886887518884799989999999999999999788798899988832578 Q gi|254780964|r 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 (352) Q Consensus 244 ~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~ 323 (352) ++++|+|++||++++++|++++++||++|++|+++++|.|++|||++++++||+|+|||||.+||++++|+..+||+||| T Consensus 283 ~i~~EnP~l~t~e~~~~i~~~~~eAVelE~~f~~d~lp~gilGlna~~~~~YI~yiAdrRL~qLGl~~~y~~~~NPfpWm 362 (391) T PRK07209 283 QIKLENPHLWTAEFQAEIRELILEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLDPLYPGTENPFPWM 362 (391) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH T ss_conf 98741842277789999999999999999999997546887898999999999999989999879998789999980079 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99717886755576671122105867789 Q gi|254780964|r 324 SEVIDLKKEKNFFETRVTEYQQGAELKWD 352 (352) Q Consensus 324 ~~~~~~~~~tnFFe~~~t~Y~k~~~~~~d 352 (352) ++.+++.++|||||+|||+|||||+++|| T Consensus 363 ~e~idl~~~tNFFE~RVteYq~~g~l~wd 391 (391) T PRK07209 363 SEMIDLKKEKNFFETRVIEYQTGGALSWD 391 (391) T ss_pred HHHHCCCCCCCCCCCCHHHHHCCCCCCCC T ss_conf 98627332135133208776206657889 No 2 >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Probab=100.00 E-value=0 Score=644.85 Aligned_cols=308 Identities=27% Similarity=0.478 Sum_probs=289.3 Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 800--017861679999999999457987036747989985202689989999999999999864333345566640133 Q gi|254780964|r 30 DVN--QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 (352) Q Consensus 30 ~~~--~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~ 107 (352) +++ +++||+|||+|++|+||+++||+|+||||++|+.||++ .+||+.||++++++|+|||++|++|++|+..++++. T Consensus 94 ~~~~~tykP~~Yp~awe~ykk~~~~~Wt~eEIdL~~Dv~DW~~-~kLtd~Er~fIk~iLaFFA~sD~iV~eNl~~~f~~e 172 (410) T PRK12759 94 TTFSKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPL 172 (410) T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2115665784388999999999980797676465441887601-789979999999999999757999999999999987 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHH Q ss_conf 05779999999999999977899999999714646999999972001898778899999740121010267774014999 Q gi|254780964|r 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 (352) Q Consensus 108 ~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (352) +++||+|+++++|+++|+||+++||++++|++.|+.| |+++.++|++++|++|+.++. +..+..+. T Consensus 173 v~~pEar~fy~~Qa~~E~IHse~YslLidTl~~~d~e-f~a~~~~p~i~~K~~~~~~~~-------------~~~~~~~a 238 (410) T PRK12759 173 FKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAMTDKIDFMMDAD-------------PTTRRGLG 238 (410) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHCCC-------------CCHHHHHH T ss_conf 4789999999999999999999999999985698899-999998599998999984689-------------32788999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 99999740001444114788998997598012899999998566666999999999765537542206789999999999 Q gi|254780964|r 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 (352) Q Consensus 188 ~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~e 267 (352) .+++++++.|||+|++||+++|||+++|+|||++++++||+|||++|+.|++.|++++++|+|++++++++++|++++++ T Consensus 239 ~~l~~~~f~EGifFsgSFa~I~~lkkrglMpGL~~sne~I~RDEglH~eFa~~Lf~~~~~e~p~i~~~~~~~~I~~ii~e 318 (410) T PRK12759 239 LCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASK 318 (410) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99999999847899999999997131688740131200011201336899999999997637120777899999999999 Q ss_pred HHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 998768868875188847-9998999999999999999978879889998883257899717886755576671122105 Q gi|254780964|r 268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 (352) Q Consensus 268 ave~E~~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~ 346 (352) ||++|.+|++.++|.+.+ |||+++|++||+|+|||||.+||++|+|++++||+|||++.+++.++|||||+|||+|||| T Consensus 319 AVeiE~~Fi~~alp~~~I~Gmn~~~m~qYIeyVADRlL~qLG~~kiy~~~~NPf~wMe~il~~~~ktNFFE~RVtEYqka 398 (410) T PRK12759 319 AVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVA 398 (410) T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHC T ss_conf 99999999997466677899899999999999999999986999878999998279999876755577567768877627 Q ss_pred C-CCCCC Q ss_conf 8-67789 Q gi|254780964|r 347 A-ELKWD 352 (352) Q Consensus 347 ~-~~~~d 352 (352) | .|+|| T Consensus 399 gv~g~wd 405 (410) T PRK12759 399 GLTGSWD 405 (410) T ss_pred CCCCCHH T ss_conf 7576488 No 3 >PTZ00211 ribonucleotide reductase small subunit; Provisional Probab=100.00 E-value=0 Score=619.36 Aligned_cols=310 Identities=31% Similarity=0.598 Sum_probs=289.8 Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 78813374868899800017861679999999999457987036747989985202689989999999999999864333 Q gi|254780964|r 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 (352) Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~ 95 (352) +.+..+++|+.|+++|++++|+||||+|++|++++++||+|+||||++|++||++ ||+.||++++++|++|+++|++ T Consensus 6 ~~~q~~e~~l~~n~~R~~l~P~kYp~~~~~ykk~~~~fW~peEi~ls~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~~ 82 (330) T PTZ00211 6 KENEVEEPLLKENPDRYVLFPIKYPDIWRKYKKAEASFWTVEEIDLGNDLKDWEK---LNDGERHFIKHVLAFFAASDGI 82 (330) T ss_pred HHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHH T ss_conf 4101048534689874355286367999999999975897330263323999976---9999999999999999999999 Q ss_pred HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3455666401330577999999999999997789999999971464699---9999972001898778899999740121 Q gi|254780964|r 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172 (352) Q Consensus 96 v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~ 172 (352) |+++++..+++.++.||+++++++|++||+||++|||+|++++++|+.+ +|+++.++|.+++|++|+.++++ T Consensus 83 v~~~l~~~~~~~i~~pE~~~~~~~q~~~E~IH~~sYs~ii~tl~~d~~e~~~if~~~~~~~~i~~k~~~~~~~~~----- 157 (330) T PTZ00211 83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPCIKKKAEWAIRWIN----- 157 (330) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----- T ss_conf 972299999886787999999999999999999999999999749878999999999999999999999997516----- Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 01026777401499999999740001444114788998997598012899999998566666999999999765537542 Q gi|254780964|r 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 (352) Q Consensus 173 ~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352) ++..+.++++++ +++|||+|||||+++|+|+++|+|+|+|++|+||+|||++|+.|++.|+++++.+.| T Consensus 158 --------~~~~~~~~lva~-~~lEgi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-- 226 (330) T PTZ00211 158 --------SSASFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP-- 226 (330) T ss_pred --------CCHHHHHHHHHH-HHCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-- T ss_conf --------953699999998-702320330118999999974974117998889982099999999999999756299-- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC Q ss_conf 20678999999999999876886887518884799989999999999999999788798899988832578997178867 Q gi|254780964|r 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 (352) Q Consensus 253 ~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~ 332 (352) .+++++++++||++|.+|+.++++.+++||+++++++||+|+||+||.+||++|+|++ +||+|||+ .+++.++ T Consensus 227 -----~e~v~~~~~eAvelE~~f~~~~~~~~~iGl~~e~l~~Yi~y~An~rL~~LG~~~~f~~-~nP~~w~~-~~~~~~k 299 (330) T PTZ00211 227 -----RERVQEIIKDAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVSLGYEKIYNS-KNPFDWME-MISLQGK 299 (330) T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHH-HHCCCCC T ss_conf -----9999999999999999999987367866999999999999999999998799988899-99845899-8546888 Q ss_pred CCCCCCCCCCCCCCCCCCC Q ss_conf 5557667112210586778 Q gi|254780964|r 333 KNFFETRVTEYQQGAELKW 351 (352) Q Consensus 333 tnFFe~~~t~Y~k~~~~~~ 351 (352) |||||+|||+|+|||.+.+ T Consensus 300 tnFFE~r~t~Y~kag~~~~ 318 (330) T PTZ00211 300 TNFFEKKVGEYQKAGVMSE 318 (330) T ss_pred CCCCCCCHHHHHHCCCCCC T ss_conf 8876677888877035645 No 4 >COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Probab=100.00 E-value=0 Score=617.51 Aligned_cols=334 Identities=37% Similarity=0.628 Sum_probs=312.4 Q ss_pred CHHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 1000654578813374868899-800017861679999999999457987036747989985202689989999999999 Q gi|254780964|r 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 (352) Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l 86 (352) +.+++++++.....+++++|++ +.++++|+||||+|++|+++.+|||.|+||||++|+.||++ ||+.||++++++| T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~---Ls~~Ek~~~~~vl 78 (348) T COG0208 2 YKIFNPTKNDELEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKK---LSDDEKDLIIRVL 78 (348) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH---CCHHHHHHHHHHH T ss_conf 7433653567533001036786554557764448999999998865788101576231999876---7999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHH-HHHHHHHHHHHHHHHHH Q ss_conf 99986433334556664013305779999999999999977899999999714646--9999-99972001898778899 Q gi|254780964|r 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF-NMYREVPSITAKANWAL 163 (352) Q Consensus 87 ~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f-~~~~~~~~i~~k~~~~~ 163 (352) ++|+++|++|++++...+.++++.||+++++++|++||+||++|||+|++|+++++ .++| ++..+.+.+++|+.++. T Consensus 79 ~~lt~lDsiq~~~~~~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~ 158 (348) T COG0208 79 AFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIIL 158 (348) T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999998886011888998746879999999999999999999999999858970067999998752499999999999 Q ss_pred HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99974012101026777401499999999740001444114788998997598012899999998566666999999999 Q gi|254780964|r 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 (352) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~ 243 (352) ++|.+ ..... .+..+.++.+++++++++||++|||||+++|+|++||||+|++++|++|+|||++|+.|++++++ T Consensus 159 ~~y~~-~~~~~----~~~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~ 233 (348) T COG0208 159 RYYDD-LGDDP----DDPLEEFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQ 233 (348) T ss_pred HHHHH-CCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99873-16785----54248999999999999999999978999999876268877799999999779999989999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 76553754220678999999999999876886887518884799989999999999999999788798899988832578 Q gi|254780964|r 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 (352) Q Consensus 244 ~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~ 323 (352) .++.|+|+++++++++++++++.+||++|++|+.++++ |++|||.+.+++||+|+||+||++||++|+|+...||+||+ T Consensus 234 ~~~~e~~~~~t~e~~~~~~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~ 312 (348) T COG0208 234 RLVAENPELWTAELKDEIYDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWI 312 (348) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 99873838556888999999999999999999998735-65799889999999999879999759998899878965799 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCC-CCC Q ss_conf 997178867555766711221058-677 Q gi|254780964|r 324 SEVIDLKKEKNFFETRVTEYQQGA-ELK 350 (352) Q Consensus 324 ~~~~~~~~~tnFFe~~~t~Y~k~~-~~~ 350 (352) +..+++.+++||||+|+++|+||+ ... T Consensus 313 ~~~~~~~~~~dFFe~~~ssY~~~~~~~~ 340 (348) T COG0208 313 ELSLSADEKTDFFEGRVSSYQKGSVASE 340 (348) T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHCCCC T ss_conf 8623433357750046416776104567 No 5 >PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Probab=100.00 E-value=0 Score=614.42 Aligned_cols=335 Identities=22% Similarity=0.329 Sum_probs=303.2 Q ss_pred HHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 000654578813374868899-8000178616799999999994579870367479899852026899899999999999 Q gi|254780964|r 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 (352) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~ 87 (352) -+||..+ ++.-++||+.|++ ++.++..+||||++++|++|+++||+|+||||++|+.||++ ||+.||++++++|+ T Consensus 4 ~~fn~~~-~d~~~~p~F~G~~~~i~~~~~~kYp~~~~Lykkq~~~FW~PEEIdLs~D~~d~~~---Lt~~Ek~~f~~~L~ 79 (376) T PRK09101 4 TTFSQTK-NDQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLK 79 (376) T ss_pred EECCCCC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH---CCHHHHHHHHHHHH T ss_conf 1106887-6300288427997442143201457999999999867898311223631999987---79999999999999 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99864333345566640133057799999999999999778999999997146469999999720018987788999997 Q gi|254780964|r 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 (352) Q Consensus 88 ~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~ 167 (352) +|+.+||+|++++..++++++++||+++++++|+++|+||++|||+|++++..|++++|+.+.++|++.+|++++.++|+ T Consensus 80 f~t~lDSiq~~n~~~~f~~~is~PE~~~~~~~q~~~E~IHs~SYs~Ii~t~~~dp~eiFd~i~~~~~i~kra~~i~~~yd 159 (376) T PRK09101 80 YQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAEDISSYYD 159 (376) T ss_pred HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999853507677554679999999999999999999999999998628989999999847999999999999989 Q ss_pred HHCCCHHH----------CC-------CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 40121010----------26-------77740149999999974000144411478899899759801289999999856 Q gi|254780964|r 168 TLSSPSFT----------TG-------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 (352) Q Consensus 168 ~~~~~~~~----------~~-------~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RD 230 (352) .+...... .. ..+-++.++.++ ++..++|||+||+||+++|+|+++|+|+|++++|+||+|| T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~~al-va~~iLEgi~F~~~F~~~~~~~~~~~m~g~~~~~~~i~rD 238 (376) T PRK09101 160 DLIEMTQYYHLLGEGTHTVNGKTVTVNLRELKKKLYLCL-MSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARD 238 (376) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 999887888751443101255411001688999999999-9999876899899999999998648884579999999971 Q ss_pred HHHHHHHHHHHHHHHHH--HCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 66669999999997655--375422--067899999999999987688688751888-4799989999999999999999 Q gi|254780964|r 231 ESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305 (352) Q Consensus 231 E~lH~~f~~~l~~~l~~--E~p~l~--~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~ 305 (352) |++|+.+++.+++.++. ++|+++ ++++++++++|+++||++|++|++|+|++| ++|||++.+++||+|+||+||+ T Consensus 239 E~~Hl~~~~~ii~~l~~~~e~pe~~~~~~e~~~~v~~m~~~ave~E~~wa~ylf~~G~iiGLn~~~l~~Yi~ylan~Rl~ 318 (376) T PRK09101 239 EALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQ 318 (376) T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99899999999999985389827889999999999999999999999999996669971688999999999999999999 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC Q ss_conf 78879889998883257899717886-75557667112210586 Q gi|254780964|r 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAE 348 (352) Q Consensus 306 ~lG~~~~f~~~~nP~~W~~~~~~~~~-~tnFFe~~~t~Y~k~~~ 348 (352) +||++++|+..+||+|||+.+++.++ ++||||+++|+|.+|+. T Consensus 319 ~lGl~~~y~~~~NPlpWm~~~~~~~~~q~a~qE~evtsY~~g~~ 362 (376) T PRK09101 319 AVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 (376) T ss_pred HCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC T ss_conf 76999999999998458999865576746731201300112142 No 6 >PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Probab=100.00 E-value=0 Score=598.03 Aligned_cols=314 Identities=29% Similarity=0.484 Sum_probs=288.3 Q ss_pred HCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 374868899-8000178616799999999994579870367479899852026899899999999999998643333455 Q gi|254780964|r 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 (352) Q Consensus 21 ~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~ 99 (352) .++|++|.+ +..+++|++|||+|++|++++++||+|+||||++|++||++ ||+.||++++++|++||++|++|+++ T Consensus 2 ~~~~~~g~~~~~~n~~~~~y~~~~~~y~~~~~~fW~peEi~l~~D~~dw~~---Lt~~Ek~~~~~~L~~~t~~D~~v~~~ 78 (325) T PRK09614 2 SRKIIMGNLYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKK---LSAEEKNLYTRVFGGLTLLDTLQNNN 78 (325) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 860058996766235965678999999999857899635380200999987---99999999999999999985765505 Q ss_pred HHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC Q ss_conf 66640133057799999999999999778999999997146469--9999997200189877889999974012101026 Q gi|254780964|r 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 (352) Q Consensus 100 ~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~ 177 (352) +...+.+.+++||+++++++|+++|+||++|||+|+++|+++++ ++|+++.++|.|++|++|+.++++. T Consensus 79 ~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~~~~~~~i~~k~~~i~~~y~~--------- 149 (325) T PRK09614 79 GMPNIMPDITTPEEKAVLANIAFMEAVHAKSYSYILSTLCTPEEIDEAFEWVEENPYLQKKADIIMQVYEE--------- 149 (325) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCC--------- T ss_conf 89998504994899999999999999999999999998199488999999997069999999999998727--------- Q ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 77740149999999974000144411478899899759801289999999856666699999999976553754220678 Q gi|254780964|r 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 (352) Q Consensus 178 ~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~ 257 (352) +..+.+++++++ ++++|||+|||||+++++|+++|+|+|+|++|+||+|||++|+.|++.|++++++|+|+++++++ T Consensus 150 --~~~~~~~~~lva-~~~lEGi~FyssFa~~~~f~~~g~m~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~ 226 (325) T PRK09614 150 --ETKEDPLKALVA-SVFLEGFLFYSGFYYPLYLARQGKMTGTGQIIRLIIRDESLHGYYIGYLFQAGLEELPELEQEEL 226 (325) T ss_pred --CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf --646789999999-99987999998899999999859662589999999987888899999999999863988557999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-CCCCCCCCC Q ss_conf 9999999999998768868875188847999899999999999999997887988999888325789971-788675557 Q gi|254780964|r 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI-DLKKEKNFF 336 (352) Q Consensus 258 ~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~-~~~~~tnFF 336 (352) ++++++++++||++|++|++++++ ++|+ .+++++||+|+||+||.+||++|+|++..+|.|||+.+. +..++|||| T Consensus 227 ~~~i~~~~~eave~E~~~~~~~~~--~~Gl-~~~~~~Yi~y~an~~L~~lG~~~~f~~~~~~p~w~~~~~~~~~~~tnFF 303 (325) T PRK09614 227 KDEIYDLLYELYENEEAYTELLYD--ILGL-TEDVKKYIRYNANKALMNLGLEPLYPEEEVNPIWLNGLSNNADENHDFF 303 (325) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC T ss_conf 999999999999999999999855--4787-8999999999999999977999889998899779999885778045898 Q ss_pred CCCCCCCCCCCC-CCCC Q ss_conf 667112210586-7789 Q gi|254780964|r 337 ETRVTEYQQGAE-LKWD 352 (352) Q Consensus 337 e~~~t~Y~k~~~-~~~d 352 (352) |+|||+|+||+. ..|| T Consensus 304 E~r~t~Y~k~~~~~~~D 320 (325) T PRK09614 304 EGKGTSYSKGSVEATFD 320 (325) T ss_pred CCCHHHHHHCCCCCCCC T ss_conf 78711323156678843 No 7 >PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=100.00 E-value=0 Score=562.80 Aligned_cols=296 Identities=22% Similarity=0.342 Sum_probs=273.2 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779 Q gi|254780964|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352) Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352) +++.++|||++++|+++.+|||.|+||||++|++||++ ||++||++++++|++||++|++|++++...+.+.++.|| T Consensus 15 Nwn~~~~~~~~~~y~~~~~nfW~PeEI~l~~D~~dw~~---Lt~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~pE 91 (324) T PRK13966 15 NWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPH 91 (324) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 78886568999999999968788710342412999976---999999999999999999999997652998988748899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH Q ss_conf 999999999999977899999999714646--999999972001898778899999740121010267774014999999 Q gi|254780964|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352) Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352) +++++++|++||+||++|||+|+++++.++ .++|+++.++|.+++|++++.++++. +.. +.+. T Consensus 92 ~~~~l~~~a~~E~IHs~SYs~i~~tl~~~~e~~~~f~~~~~~~~l~~k~~~i~~~~~~-------------d~~-~~~~- 156 (324) T PRK13966 92 EEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRG-------------DEP-LKRK- 156 (324) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-------------CHH-HHHH- T ss_conf 9999999999999999999999998089251899999985089999999999999618-------------789-9999- Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998 Q gi|254780964|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352) Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352) ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+.+.+++....+.|+++++++.+++++++.++++ T Consensus 157 va~~~lEg~~FysgFa~~l~l~~~~kM~G~~~ii~~I~RDEs~H~~~~~~l~~~~~~~~~~~~~~e~~~~i~~~~~~~v~ 236 (324) T PRK13966 157 VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYD 236 (324) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999985699867899999999837888879999999988854877689999999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 76886887518884799989999999999999999788798899988---832578997178867555766711221058 Q gi|254780964|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 (352) Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~---nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~~ 347 (352) +|++|++++++. +||+ +++++||+|+||+||++||++|+|+..+ ||++|+...+++.+++||||+|||+|+||+ T Consensus 237 ~E~~~~~~l~~~--~GL~-~dv~~Yi~Y~ANrrL~~LGl~~~fp~~~~~~nP~~~~~~~~~~~~~~nFFE~r~t~Y~~g~ 313 (324) T PRK13966 237 NEVEYTQDLYDE--VGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGK 313 (324) T ss_pred HHHHHHHHHHCC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC T ss_conf 999999987523--7948-9999999999999999788998899745788946699862256753786788700214165 Q ss_pred CC Q ss_conf 67 Q gi|254780964|r 348 EL 349 (352) Q Consensus 348 ~~ 349 (352) +. T Consensus 314 ~~ 315 (324) T PRK13966 314 AV 315 (324) T ss_pred CC T ss_conf 66 No 8 >PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=100.00 E-value=0 Score=548.04 Aligned_cols=299 Identities=21% Similarity=0.268 Sum_probs=264.5 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779 Q gi|254780964|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352) Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352) +++.++|||++.+|+++.+|||+|+||||++|++||++ ||++||++++++|++||++|++|++++...+++.++.|| T Consensus 28 NWn~~~~~~~~~~w~~~~~nFW~PeEI~ls~D~~dw~~---Ls~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~~e 104 (337) T PRK13965 28 NWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 104 (337) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHH T ss_conf 78887658899999999968687700451744999987---999999999999999999999986552176631068799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH Q ss_conf 9999999999999778999999997146469--99999972001898778899999740121010267774014999999 Q gi|254780964|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352) Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352) +++++++|++||+||++|||+|++|++.+++ ++|+++.++|.+++|++++.++++. + ..++++ T Consensus 105 ~~~~l~~~~~~EaIHs~SYS~il~tl~~~~e~~e~f~~~~~~~~l~~k~~~i~~~y~~-------------~-~~~~~~- 169 (337) T PRK13965 105 EQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTESLQDRARVLIPYYTG-------------D-DPLKSK- 169 (337) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-------------C-CHHHHH- T ss_conf 9999999999999999999999999669876999999871499999999999988528-------------8-699999- Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998 Q gi|254780964|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352) Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352) ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+++.+++...++.+...++++++++++++++||+ T Consensus 170 vas~~lEGi~FysgFa~~l~l~~~gkM~g~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~e~~~e~~~~v~~~~~~aVe 249 (337) T PRK13965 170 VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELID 249 (337) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999886698723798878998704888889999999998742987789999999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCCCCCCCCC Q ss_conf 76886887518884799989999999999999999788798899988-83257899717--8867555766711221058 Q gi|254780964|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGA 347 (352) Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~-nP~~W~~~~~~--~~~~tnFFe~~~t~Y~k~~ 347 (352) +|++|++++++. +|| .+++++||+|+||+||.+||++|+|++.+ +|.||+-..++ +.+++||||+|||+|+||+ T Consensus 250 lE~~~~~~~~~~--~gl-~~~l~~YI~YiANrrL~~LGl~~~y~~~~~~~~P~~~~~~~~~~~~~~dFFE~r~t~Y~~g~ 326 (337) T PRK13965 250 LEKAYLRELYAG--FDL-AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVMGI 326 (337) T ss_pred HHHHHHHHHHHC--CCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHEE T ss_conf 999999999836--776-99999999999999999779988899867888814589760478867785477721002100 Q ss_pred C-CCCC Q ss_conf 6-7789 Q gi|254780964|r 348 E-LKWD 352 (352) Q Consensus 348 ~-~~~d 352 (352) . ..|| T Consensus 327 ~~~~~d 332 (337) T PRK13965 327 TEETTD 332 (337) T ss_pred CCCCCC T ss_conf 578823 No 9 >PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=100.00 E-value=0 Score=542.50 Aligned_cols=299 Identities=22% Similarity=0.345 Sum_probs=267.2 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779 Q gi|254780964|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352) Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352) +++.++||+++++|+++.+|||.|+||||++|++||++ |++.||++++++|++|+++|++|+.+....+.+.++.|| T Consensus 13 NWn~~~~~~~~~~w~~~~~nfW~PeEI~ls~Di~dw~~---L~~~Ek~~~~~il~~lt~lDs~q~~~~~~~~~~~~~~pe 89 (322) T PRK13967 13 NWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVTPH 89 (322) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 88887768899999999978888712162422999876---999999999999999999999998224988888728999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH Q ss_conf 999999999999977899999999714646--999999972001898778899999740121010267774014999999 Q gi|254780964|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352) Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352) +++++++|++||+||++|||+|++|++.++ +++|+++.++|.+++|++++.++++. +.. +.+ . T Consensus 90 ~~~~l~~~a~~EaIHs~SYs~i~~tl~~~~e~~~~f~~~~~~p~l~~k~~~~~~~~~~-------------~~~-~~~-~ 154 (322) T PRK13967 90 EEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRG-------------DDA-LKR-K 154 (322) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-------------CHH-HHH-H T ss_conf 9999999999999999999999998589677999999996399999999999998238-------------759-999-9 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998 Q gi|254780964|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352) Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352) ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+...+++....+.|+.+++++++++++++.++|+ T Consensus 155 ~~~~~lEGi~FYsgF~~~l~~~~~gkM~G~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~v~ 234 (322) T PRK13967 155 ASSVMLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYA 234 (322) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999984699877899999999828888999999999874523787789999999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCCCCCCCCC Q ss_conf 76886887518884799989999999999999999788798899988-83257899717--8867555766711221058 Q gi|254780964|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGA 347 (352) Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~-nP~~W~~~~~~--~~~~tnFFe~~~t~Y~k~~ 347 (352) +|++|++++++. +||+ +++++||+|+||+||.+||++|+|+.+. ++.||+...++ +.+++||||+|||+|+||+ T Consensus 235 ~Ei~~~~~l~~~--lGl~-~dv~~YI~YiANrrL~~LGl~p~y~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~ 311 (322) T PRK13967 235 NEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGT 311 (322) T ss_pred HHHHHHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHCC T ss_conf 999999998712--2868-9999999899999999788999999855778836688757687632685578864004325 Q ss_pred C-CCCC Q ss_conf 6-7789 Q gi|254780964|r 348 E-LKWD 352 (352) Q Consensus 348 ~-~~~d 352 (352) + ..|| T Consensus 312 ~~~~~d 317 (322) T PRK13967 312 HQPTTD 317 (322) T ss_pred CCCCCC T ss_conf 667765 No 10 >cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha- Probab=100.00 E-value=0 Score=536.48 Aligned_cols=284 Identities=41% Similarity=0.771 Sum_probs=271.1 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCH Q ss_conf 00178616799999999994579870367479899852026899899999999999998643333455666401330577 Q gi|254780964|r 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 (352) Q Consensus 32 ~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~ 111 (352) ++++|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|++|+++|++|++++...+.+.++.| T Consensus 1 ~~~~p~~y~~~~~~y~~~~~~fW~~eEi~l~~D~~dw~~---lt~~ek~~~~~~La~~~~~D~~v~~~~~~~~~~~~~~p 77 (288) T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEK---LTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP 77 (288) T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 987887777999999999877998310073621999987---99999999999999999985688733899987635878 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHH Q ss_conf 9999999999999977899999999714646--99999997200189877889999974012101026777401499999 Q gi|254780964|r 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 (352) Q Consensus 112 E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (352) |+++++++|+++|+||++|||+|++++++++ +++|+++.++|.+++|++|+.++++.... +.++.+++++ T Consensus 78 E~~~~~~~q~~~E~iHs~sYs~il~~l~~~~~~~~~f~~~~~~~~i~~k~~~~~~~~~~~~~--------~~~~~~~~~l 149 (288) T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDD--------NTKESFAERL 149 (288) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC--------CCHHHHHHHH T ss_conf 99999999999999999999999998679877899999985279999999999999972335--------2168999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99974000144411478899899759801289999999856666699999999976553754220678999999999999 Q gi|254780964|r 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 (352) Q Consensus 190 i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eav 269 (352) +++ +++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.+++++++|+|+++++++++++++++.+|| T Consensus 150 i~~-~~lEgi~F~s~Fa~~~~l~~~g~m~g~~~~i~~I~rDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eav 228 (288) T cd01049 150 VAF-AILEGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAV 228 (288) T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 999-9999999987899999999859860099999999998999999999999998862988565667999999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHH Q ss_conf 87688688751888479998999999999999999978879889998-88325789971 Q gi|254780964|r 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVI 327 (352) Q Consensus 270 e~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~-~nP~~W~~~~~ 327 (352) ++|++|++++++.|++|++.+++++||+|+||+||.+||++++|++. +||+|||+... T Consensus 229 ~~E~~~~~~~~~~~i~gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~~ 287 (288) T cd01049 229 ELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELIS 287 (288) T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC T ss_conf 99999999980688689899999999999999999977999999999999777998751 No 11 >pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain. Probab=100.00 E-value=0 Score=525.21 Aligned_cols=275 Identities=28% Similarity=0.468 Sum_probs=254.6 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 74868899800017861679999999999457987036747989985202689989999999999999864333345566 Q gi|254780964|r 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 (352) Q Consensus 22 ~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~ 101 (352) ++++.++++++ +|+||||+|++|++++++||+|+||||++|++||++ ||+.||++++++|++||++|++|+++++ T Consensus 1 e~~l~en~~r~--~PikYp~~~~~yk~~~~~fW~peEi~l~~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~~v~~~~~ 75 (281) T pfam00268 1 EPLLRENSKRF--YPIQHPDIWELYKKAEANRWLAEEVDLSKDIPDWEK---LNEAEREFYSFVFAFLAAADGIVNENLA 75 (281) T ss_pred CCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99877861235--698585999999999977899621271411999987---9999999999999999999999998789 Q ss_pred HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC Q ss_conf 640133057799999999999999778999999997146469---99999972001898778899999740121010267 Q gi|254780964|r 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 (352) Q Consensus 102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~ 178 (352) ..+++.++.||+++++++|+++|+||++|||+++++|++|+. ++|+++.++|.+++|++|+.++++ T Consensus 76 ~~~~~~~~~pE~~~~~~~q~~~E~IH~~sYs~il~tl~~d~~e~~~~f~~~~~~~~i~~k~~~~~~~~~----------- 144 (281) T pfam00268 76 ERLSAEFQQKDILHYYGEQIAIENVHSEVYSLIQLTLFNDEKERDAYFNAIETDPAIQRKAQWLLRWVR----------- 144 (281) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------- T ss_conf 999987784999999999999999999999999998738917899999999988999999999999852----------- Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 77401499999999740001444114788998997598012899999998566666999999999765537542206789 Q gi|254780964|r 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 (352) Q Consensus 179 ~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~ 258 (352) ++..+.+++++ ++++|||+|||||+++++|+++|+|+|+|++|+||+|||++|+.|++.+++++++++ ++.. T Consensus 145 --~~~~~~~~lva-~~~lEgi~f~s~Fa~~~~l~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~-----~~~~ 216 (281) T pfam00268 145 --DAESLAEKLIA-FALVEGIFFSSSFASIAYLRKRGLMPGTCQSNELISRDEALHTDAACLLYNNYLGLE-----KPEP 216 (281) T ss_pred --CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCH T ss_conf --77079999999-999878999876899999997584344999999999989999999999999998735-----8549 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH Q ss_conf 999999999998768868875188847999899999999999999997887988999888325 Q gi|254780964|r 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 (352) Q Consensus 259 ~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~ 321 (352) +++++++++||++|++|++++++.+++||+++++++||+|+||+||.+||++|+|++ +||++ T Consensus 217 ~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~LG~~~~f~~-~NPf~ 278 (281) T pfam00268 217 KRIYKLFREAVEIEIEFIEAAAPVDVHGMNVRAIKQYIEFSADRLLVAIGYKPLFNV-PNPFF 278 (281) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCC T ss_conf 999999999999999999986778838979999999999999999997799998999-89899 No 12 >KOG1567 consensus Probab=100.00 E-value=0 Score=499.43 Aligned_cols=310 Identities=32% Similarity=0.571 Sum_probs=291.3 Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 57881337486889980001786167999999999945798703674798998520268998999999999999986433 Q gi|254780964|r 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 (352) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~ 94 (352) .....++++++.+++.+++++|+||+..|++|+++++.||+++||++++|..||.+ |+++||+++.++|++|+++|+ T Consensus 18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~---L~~~er~fIs~vlaffaasdG 94 (344) T KOG1567 18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEK---LNDDERHFISHVLAFFAASDG 94 (344) T ss_pred CCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHH---CCHHHHHHHHHHHHHHHCCCC T ss_conf 34564335333678877223661259999999764245671877400123466987---070335369999998843665 Q ss_pred HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 33455666401330577999999999999997789999999971464699---999997200189877889999974012 Q gi|254780964|r 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 (352) Q Consensus 95 ~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~ 171 (352) +|..|+...+...++.||.+.++++|+++|+|||+.||.+++++..|+.| .|+++.+.|.+++|++|+.+|.. T Consensus 95 ivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~---- 170 (344) T KOG1567 95 IVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWIS---- 170 (344) T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---- T ss_conf 0438999988888615110000224779988789999999999856906665799998723777777799998852---- Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 10102677740149999999974000144411478899899759801289999999856666699999999976553754 Q gi|254780964|r 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 (352) Q Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~ 251 (352) ..+..|..++++|. +.|||+|.+|||.++||.+||+|||+.-.+++|+|||++|+.|+|.++.++++ T Consensus 171 --------d~~s~faeRlvAFA-avEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~---- 237 (344) T KOG1567 171 --------DKDSLFAERLVAFA-AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKK---- 237 (344) T ss_pred --------CCCCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH---- T ss_conf --------78750999999999-87411012524665533532878764332135330247761199999999860---- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 22067899999999999987688688751888479998999999999999999978879889998883257899717886 Q gi|254780964|r 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 (352) Q Consensus 252 l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~ 331 (352) ++..++|++++.+||++|.+|....+|...+|||...|.+||+++||+.|..||+++.|++ +||++||+ .+.+.+ T Consensus 238 ---kp~~~ri~eII~eAV~IEqef~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~-~NPFdfME-nISl~G 312 (344) T KOG1567 238 ---KPNEERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNA-ENPFDFME-NISLAG 312 (344) T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEECC-CCCHHHHH-HHHHCC T ss_conf ---8978999999999999999998711654553457889999999999999998485502057-88168888-735325 Q ss_pred CCCCCCCCCCCCCCCCCC Q ss_conf 755576671122105867 Q gi|254780964|r 332 EKNFFETRVTEYQQGAEL 349 (352) Q Consensus 332 ~tnFFe~~~t~Y~k~~~~ 349 (352) +|||||+||++|||++.. T Consensus 313 KTNFFEKrVseYQk~~vM 330 (344) T KOG1567 313 KTNFFEKRVSEYQKAGVM 330 (344) T ss_pred CCCHHHHHHHHHHHCHHC T ss_conf 441577656776501002 No 13 >cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. Probab=100.00 E-value=0 Score=384.88 Aligned_cols=253 Identities=19% Similarity=0.259 Sum_probs=215.3 Q ss_pred HHHHHHHHHC-CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHCCCHHHHHHHHH Q ss_conf 9999999945-7987036747989985202689989999999999999864333345566640--133057799999999 Q gi|254780964|r 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI--YRHLSNPECRQYLLR 119 (352) Q Consensus 43 ~~ly~k~~~~-fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i--~~~~~~~E~~~~l~~ 119 (352) +++|.|+.++ ||+|+||||++|++||++ ||+.||++++++|++|+++|++|+.++...+ ....+.+|+++++++ T Consensus 10 ~~l~~~~~~~nFW~PeEId~s~D~~dW~~---Lt~~Er~~i~~ila~F~~~d~~V~~nl~~~~~~~~~~~~~e~~~~l~~ 86 (280) T cd07911 10 MKLFEKGKRKGFWNPADIDFSQDREDWEQ---LSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQ 86 (280) T ss_pred HHHHHHHHCCCCCCHHHCCCCCHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 89999764038998477086013888856---999999999999999998588999879999988520375899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 999999778999999997146469--999999720018987788999997401210102677740149999999974000 Q gi|254780964|r 120 QAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 (352) Q Consensus 120 q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE 197 (352) |+++|+||++|||+++++++.+++ +.++.....+..+.+.....+ ....+.+...++++++|++++| T Consensus 87 q~~eEaiH~~sYs~~~~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ilE 155 (280) T cd07911 87 FLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELR-----------LYLDASPAAQVRASVTYNMIVE 155 (280) T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999999846756588885689872899999999997-----------5379988999999999999999 Q ss_pred HHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 144411478899-8997598012899999998566666999999999765537542206789999999999998768868 Q gi|254780964|r 198 GMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 (352) Q Consensus 198 Gi~Fys~Fa~~~-~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~ 276 (352) |++|||||+.++ +++++|+|||++++|+||.|||++|+.||+.+++.++.|+|++| +.+.+++.+++..|++++ +++ T Consensus 156 Gi~f~sGf~a~~~~~~~rg~m~G~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~-d~~~e~~~el~~~av~~~-~~~ 233 (280) T cd07911 156 GVLAETGYYAWRTICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANW-DVFEERMNELVPHALGLI-DEI 233 (280) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHH-HHH T ss_conf 999999999999999857988778999999998899999999999999998695678-999999999999999999-999 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 87518884799989999999999999999788798 Q gi|254780964|r 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 (352) Q Consensus 277 ~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~ 311 (352) ..+++.+++|++.+.+.+|+.++|++||..|+-.+ T Consensus 234 ~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i~~~~ 268 (280) T cd07911 234 FELYDEMPFGLDPDELMQYAVDQFQRRLGYIERAR 268 (280) T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 85156556688999999999999998744887852 No 14 >PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Probab=100.00 E-value=0 Score=369.55 Aligned_cols=293 Identities=22% Similarity=0.311 Sum_probs=240.9 Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 45788133748688998000178616799999999994579870367479899852026899899999999999998643 Q gi|254780964|r 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 (352) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D 93 (352) ++.+..+.-.+-.|.-||+. +| +.+|+++.++||.|+|||||+|++||++ ||++||+++++++++|+.+| T Consensus 6 ~~~~~~~~~~~~~~gl~w~~-~p------~~Ly~~~~~~FW~PeeId~SqD~~Dw~~---Lt~~ER~~~~~i~s~f~age 75 (318) T PRK08326 6 EGMVRHRSFSLTAGGLNWNS-FP------MKLFAKGNRKFWNPADIDFSRDRADWEK---LSDDERDYATRLCSQFIAGE 75 (318) T ss_pred CCCEEECCCCCCCCCCCCCC-HH------HHHHHHHHHCCCCHHHCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHHH T ss_conf 65533125420247758550-46------8999986306888775787330898876---89999999999999998607 Q ss_pred HHHHHHHHHHCCHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33345566640133057---799999999999999778999999997146469999999720018987788999997401 Q gi|254780964|r 94 SLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 (352) Q Consensus 94 ~~v~~~~~~~i~~~~~~---~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~ 170 (352) ++|+.++.. +...++. +|.++||++|+++|++|++||+++++++|.+++ ++.+..+.|..+.. +++.+. T Consensus 76 ~~Vt~nl~p-~~~~~~~~~~~e~~l~Lt~qafeEAvHtqsys~~ldtv~~~~d-l~~~~~d~p~~~~~------f~e~l~ 147 (318) T PRK08326 76 EAVTLDIQP-LMAAMRAEGRLEDEMYLTQFAFEEAKHTEAFRRWLDAVGVTED-LHVYTTDLPSYRQI------FYEELP 147 (318) T ss_pred HHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHH------HHHHHH T ss_conf 899976377-8998861584346899999999999999999999999568577-89987513688999------999999 Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 21010267774014999999997400014441147889989-97598012899999998566666999999999765537 Q gi|254780964|r 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 (352) Q Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l-~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~ 249 (352) .....+...+++...++++++|++++||++|||||..++++ .++|+|||++++|++|.|||++|+.||.++++.++.|+ T Consensus 148 ~~l~~l~~dpsp~~~~~A~v~yn~ilEGilfySGf~~~~~~l~~rg~lPG~a~~Ir~I~RDE~rHi~~g~~~~~rlv~e~ 227 (318) T PRK08326 148 AALNALDADPSPEAQVRASVTYNHVVEGILAETGYYAWHKICVRRGILPGLQEGVRRIGDDESRHIAFGTYTCRRLVAAD 227 (318) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99998761999799999999999999999999999999999987688987899999986159999999999999998608 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCCCC--CCCHHHHH Q ss_conf 54220678999999999999876886887518884799989999999999999999788---79889998--88325789 Q gi|254780964|r 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG---LEPLFKYT--ENPFPWMS 324 (352) Q Consensus 250 p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG---~~~~f~~~--~nP~~W~~ 324 (352) |++| +.+.+++.+++..|+.+ +.|...+++.-..||+.+++.+|+++++|+||..|+ ..|+...+ -.|..+-+ T Consensus 228 ~~~~-~~~~e~~~el~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~ya~~~~~~Rl~~i~~ar~~~~~~~~~~~~~~~~~~ 305 (318) T PRK08326 228 DSNW-DVFEERMNELIPLALGL-IDEGFALYDVIPFGLSKDEFMQYAADKGQRRLGTISRARGRPLAEIDLDYSPLQLED 305 (318) T ss_pred HHHH-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH T ss_conf 8889-99999999999999877-524410366688899989999999999988899999741997003057789899998 Q ss_pred HH Q ss_conf 97 Q gi|254780964|r 325 EV 326 (352) Q Consensus 325 ~~ 326 (352) .. T Consensus 306 ~~ 307 (318) T PRK08326 306 TF 307 (318) T ss_pred HH T ss_conf 86 No 15 >cd01054 consensus Probab=98.10 E-value=0.0011 Score=44.31 Aligned_cols=193 Identities=17% Similarity=0.138 Sum_probs=132.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---H---HHH Q ss_conf 6899899999999999998643333455666401330577999999999999997789999999971464---6---999 Q gi|254780964|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---E---GEL 145 (352) Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~---~---~e~ 145 (352) .+|++.-+.+++..++.+...+-....+. ..+....+.+.++.+..+|++.|..|++--+++...|..+ . +.- T Consensus 79 ~~l~~~w~~~l~~~l~~~~~~Eyga~~~~-a~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~~ 157 (296) T cd01054 79 EALDPEWRETLKRHLGPLRYVEYGAFMAS-AYIARYAPGDTIRNAAAFQALDELRHAQYIAYLRLELAKNYPDFGGGDDA 157 (296) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH T ss_conf 00899999999999730538999999989-99998657699999999998888889999999999986407998865599 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9999720018987788999997401210102677740149999999974000144---4114788998997598012899 Q gi|254780964|r 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAE 222 (352) Q Consensus 146 f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~ 222 (352) -..+.++|..+.--+.+.+-.. + ..-++..++.++++|+++ ++++|.-.. +.+| =.-++. T Consensus 158 k~~w~~dp~wq~~R~~~e~~~~----------~----~Dw~E~~va~nlv~e~~~~~l~~~~~~~~A--a~nG-D~~t~~ 220 (296) T cd01054 158 KRAWTEDPAWQGARRAFEDDLV----------T----GDWVEALVALNLVFEPLFTNLLFVALDRLA--AANG-DTLTPT 220 (296) T ss_pred HHHHHHCHHHHHHHHHHHHHHH----------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCC-CHHHHH T ss_conf 9998508888989999998863----------1----889999999998799634789999999999--9878-855699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999985666669999999997655375422067899999999999987688688751888 Q gi|254780964|r 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 (352) Q Consensus 223 ~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~ 283 (352) ++..+..||.+|...+..+++.+.++.|+ ..+.++.++...+..+.+.=...+-.+++-+ T Consensus 221 l~~s~q~D~~Rh~~~~~alvk~~~~~~~~-N~~~lq~w~~~w~~ra~~al~~~~~~~~d~~ 280 (296) T cd01054 221 LTLSAQTDEARHRRWGDALVKTLANDSPD-NRALLQGWLDKWFWRAHAALDAAVGMLSEYG 280 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999989999999999999999818965-6999999999999999999998788886567 No 16 >pfam02332 Phenol_Hydrox Methane/Phenol/Toluene Hydroxylase. Bacterial phenol hydroxylase is a multicomponent enzyme that catabolizes phenol and some of its methylated derivatives. This Pfam family contains both the P1 and P3 polypeptides of phenol hydroxylase and the alpha and beta chain of methane hydroxylase protein A. Probab=98.08 E-value=0.00084 Score=45.25 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=111.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HH-HHHH Q ss_conf 8998999999999999986433334556664013305779999999999999977899999999714646---99-9999 Q gi|254780964|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GE-LFNM 148 (352) Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~---~e-~f~~ 148 (352) .|++.-+.+++..++.+...+-....+. ..+.+..+.+.++.+..+|++.|..|.+--.+.+.-+.... .. -=.. T Consensus 66 ~l~~~w~~~l~~~l~~~~~~E~ga~~~~-a~~~r~~~~~~~~n~~~~~a~DelR~~Q~~~~~~~~l~~~~~~~~~~~k~~ 144 (233) T pfam02332 66 ALDPGWRETLKRHYGPLRYVEYGANMAN-AYIARFAPAPTIRNCATFQALDELRHLQRQAYFLHELAKADPDFDWGQRAY 144 (233) T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 4999999999999701218999999989-999986588999999999887999999999999987752288868489998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 9720018987788999997401210102677740149999999974000144---4114788998997598012899999 Q gi|254780964|r 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAEQYQ 225 (352) Q Consensus 149 ~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~~i~ 225 (352) +.++|..+.--+++.+... ...-++..++.++++|+++ ++++|.- .+..+-=.-+..++. T Consensus 145 w~~dp~wq~~R~~~E~~~~--------------~~Dw~E~~va~nlv~e~~~~~l~~~~~~~---~A~~~GD~~~~~l~~ 207 (233) T pfam02332 145 WTNDPAWQGLRRLFEDILV--------------TQDWVEAFIALNLVFEPLFTNLVFVALAE---DAAENGDTLTALLTS 207 (233) T ss_pred HHHCCHHHHHHHHHHHHHH--------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHH T ss_conf 8618337899999998886--------------07899999999888997536899999999---999869903799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9985666669999999997655375 Q gi|254780964|r 226 YIMRDESLHLNFGIDVINQIKIENP 250 (352) Q Consensus 226 ~I~RDE~lH~~f~~~l~~~l~~E~p 250 (352) .+..||.+|...+..+++.+.++.| T Consensus 208 s~q~D~~Rh~~~~~alvk~~~~~~p 232 (233) T pfam02332 208 SIQTDEARHARWGDALVKTALENGP 232 (233) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9998999999999999999985499 No 17 >cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho Probab=98.01 E-value=0.0017 Score=43.12 Aligned_cols=229 Identities=16% Similarity=0.119 Sum_probs=129.2 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 02689989999999999999864333345566640133057799999999999999778999999997146469999999 Q gi|254780964|r 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 (352) Q Consensus 70 t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~ 149 (352) ..+++.+.-.++++-.++..+.+|=...+.. ..+.+.++.|+.|.....|+-.|..|++.=.++...+.+... -|++. T Consensus 67 ~~~~~dpr~~~~~Kl~~~~i~~~EY~A~~~~-a~~~r~~~~~~~Rn~~~~q~lDE~RH~q~q~~~~~~y~k~~~-gf~~~ 144 (465) T cd01057 67 AYEKVDPRWVEAMKLFLGAITPGEYAAVRGM-AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYA-GFDWA 144 (465) T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHH T ss_conf 6544786899999999824888999999999-999873698899999887678888899999989998873087-76679 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 72001898778899999740121010267774014999999997400014441147889989975980128999999985 Q gi|254780964|r 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 (352) Q Consensus 150 ~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R 229 (352) .. ...++.++.---....+. ... . +. +..++.-+...|.++=-..|..+.+-+-.+-=..++..+.-|.- T Consensus 145 ~~---~~~~~~~~~~~~~~f~d~-~~t--~-d~---~e~~i~l~f~fEt~fTNllFv~~~s~Aa~nGD~~~~t~~~SiQs 214 (465) T cd01057 145 QK---AFHGNWYAGAAKRFFFDG-FIT--G-DA---VEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQS 214 (465) T ss_pred HH---HHHCCCHHHHHHHHHHHH-HHC--C-CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 99---860462477668886433-003--6-78---99999878778675101799870888987576375567777312 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCC-HHHHHHHHHHHHHHHHHH Q ss_conf 66666999999999765537542206789999999999998768868875188847--999-899999999999999997 Q gi|254780964|r 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV--GLN-APSCEQYMQFIANRRCHQ 306 (352) Q Consensus 230 DE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~--Gl~-~~~~~~yi~y~an~rL~~ 306 (352) ||++|...|...+. ++.++|+- .+..++.+...+-.+..+=...+-..++-+.. ..+ +|....||---.-+-+.. T Consensus 215 DEsRH~~~G~~~l~-~l~~d~~n-~~~lQ~~lD~aFWr~~r~~~~lvG~~mDY~tp~R~~S~kE~W~eWI~ed~g~~~~d 292 (465) T cd01057 215 DEARHMANGYPTLV-LLENDPDN-VPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSWKEFWEEWIEEDFGSYFKD 292 (465) T ss_pred HHHHHHHCCHHHHH-HHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 27777643788999-99969543-69999999999999999999988777662788776459999999999999999988 Q ss_pred C---CCCCC Q ss_conf 8---87988 Q gi|254780964|r 307 I---GLEPL 312 (352) Q Consensus 307 l---G~~~~ 312 (352) | |+++. T Consensus 293 L~~yGLk~P 301 (465) T cd01057 293 LEKYGLKKP 301 (465) T ss_pred HHHCCCCCC T ss_conf 997379998 No 18 >pfam11583 AurF P-aminobenzoate N-oxygenase AurF. AurF is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalysing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes. Probab=97.92 E-value=0.0025 Score=42.02 Aligned_cols=214 Identities=15% Similarity=0.104 Sum_probs=110.0 Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHCCHHCCCHHHHHHHHHH Q ss_conf 9457987036747989985202689989999999-----99999986433334----55666401330577999999999 Q gi|254780964|r 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK-----RNLGFFASSESLVA----NNIVLAIYRHLSNPECRQYLLRQ 120 (352) Q Consensus 50 ~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~-----~~l~~~~~~D~~v~----~~~~~~i~~~~~~~E~~~~l~~q 120 (352) ..-+|.|.|..---+-.-|.. |++++|.-+. ..++.....|+++. +.+.....+.......+.+..++ T Consensus 38 ~~~~~~ppe~~pl~gtp~~~~---l~~e~r~~l~~~~~~~~~s~~i~~E~~lv~~~~~~l~~~~~~~~~~~~~~~ya~~e 114 (295) T pfam11583 38 DDRWIYPPERVPLYGTPLWDA---MPEEQRIELLRQELANFLSVGIWFETILVNPVARLLLRGALPVDPPSAHRQYALTE 114 (295) T ss_pred CCCCCCCHHHCCCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 886789944375468978885---89999999999999999999999999999999999987503789980899999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH Q ss_conf 99999778999999997146469999999720018987788999997401210102677740149999999974000144 Q gi|254780964|r 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 (352) Q Consensus 121 ~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~ 200 (352) ...|+.|+..+...++-+|...- ..-..+.......-+.... . ...... ..+++..+.|.+. T Consensus 115 ~~DE~~H~~mf~~~~~~~g~~~~----~~p~~~~~~r~~~~l~~~~---~---------~~~~~~--~~~~~~lv~Ee~i 176 (295) T pfam11583 115 IVDECYHALMFQDAIERIGRLTG----PLPPPPRPRRALRALAALL---P---------GWLRGL--VRFAAALVAEEII 176 (295) T ss_pred HHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCHHHHHHHHHHHC---C---------HHHHHH--HHHHHHHHHHHHH T ss_conf 99999899999999999876403----5788675468999998744---2---------233308--9999999999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 41147889989975980128999999985666669999999997655375422067899999999999987688688751 Q gi|254780964|r 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 (352) Q Consensus 201 Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~ 280 (352) - .+. ...+.....-|-...+++.-.+||+.|+.|+...++.....-+.....-+...+-..+...+........+.+ T Consensus 177 d--~~~-~~~~rD~~iqP~~r~v~~iH~~DEaRHi~fare~l~~~~~~l~~~~R~~~~~~l~~~~~~f~~~~~~p~~~~~ 253 (295) T pfam11583 177 D--AYQ-RDVARDERLQPIVRRVMRIHVVDEARHISFAREVLRRRWPRLSPAQRQALALILPVFLRAFLAADINPWVYAL 253 (295) T ss_pred H--HHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 9--999-9745577779479999999999999899999999999998689999999999989999999998658089999 Q ss_pred CCCCCCCCH Q ss_conf 888479998 Q gi|254780964|r 281 PKGFVGLNA 289 (352) Q Consensus 281 ~~~~~Gl~~ 289 (352) ..+||+. T Consensus 254 --~~~gl~~ 260 (295) T pfam11583 254 --AGVGLDP 260 (295) T ss_pred --HHCCCCH T ss_conf --8769985 No 19 >pfam11266 DUF3066 Protein of unknown function (DUF3066). This family of proteins with unknown function appears to be restricted to Cyanobacteria. Probab=97.86 E-value=0.0022 Score=42.34 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=113.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 98999999999999986433334556664013305779999999999999977899999999714646999999972001 Q gi|254780964|r 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 (352) Q Consensus 75 t~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~ 154 (352) |+.-|+.|.++=+.-.-++...-+|+. .+... .|+-+-=+.+.+-||+.|.+.|.-+=++|+..++- T Consensus 4 s~~YkdAYSRINaIVIeGEqeA~~Nyi-~l~~l--lP~~~dEL~rLakME~rH~kgF~aCgrNL~V~~Dm---------- 70 (219) T pfam11266 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAEL--LPDHAEELKRLAKMENRHKKGFQACGKNLSVTPDM---------- 70 (219) T ss_pred HHHHHHHHHHHCEEEEECHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------- T ss_conf 288899998740155735087898699-99987--84038999999999998876888862378689893---------- Q ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 89877889999974012101026777401499999999740001444114788998-99759801289999999856666 Q gi|254780964|r 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDESL 233 (352) Q Consensus 155 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~-l~~~g~m~g~~~~i~~I~RDE~l 233 (352) .|..++...+... +.... ..-..+..+++.++++|. ||+--+ .--.=-=|=-.++-.-+.+||.. T Consensus 71 -----~fA~~fF~~Lh~n-Fq~A~--~egkv~TCLlIQaliIE~------FAIaAYniYipVAD~FARkITegVVkDEy~ 136 (219) T pfam11266 71 -----DFAKEFFSPLHGN-FQTAA--AEGKVVTCLLIQALIIEA------FAIAAYNIYIPVADPFARKITEGVVKDEYT 136 (219) T ss_pred -----HHHHHHHHHHHHH-HHHHH--HCCCEEEHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf -----8999999999899-99998--659922229899999999------999987631103667777887767744777 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 69999999997655375422067899999999999987688688751888-4799989999999999999999788798 Q gi|254780964|r 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311 (352) Q Consensus 234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~lG~~~ 311 (352) |..||..-++.-.. .+++++.+--++.+-+--.-.+.+-.+. ++||..+.+.+=---.-...|.+||+.. T Consensus 137 HLN~Ge~WLk~~f~--------~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~IGf~~ 207 (219) T pfam11266 137 HLNFGEEWLKANFE--------TSKEELEEANRENLPLVWKMLNQVADDAAVLGMDKEALVEDFMIAYGEALTNIGFTT 207 (219) T ss_pred HCCHHHHHHHHHHH--------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 60268999999999--------999999998886163999999999878999778899999999999999999759758 No 20 >TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; InterPro: IPR008434 This family represents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions . This enzyme is believed to utilise a binuclear iron centre and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacteria, which are differentially regulated based on the levels of copper and oxygen , . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria. CRD1 (AcsF) is required for the maintenance of photosystem I and its associated light-harvesting complexes in copper-deficient (-Cu) and oxygen-deficient (-O(2)) Chlamydomonas reinhardtii cells and is localised to the thylakoid membrane. The family also contains the Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa) AcsF protein .; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. Probab=96.60 E-value=0.007 Score=38.91 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=42.1 Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01499999999740001444114788998997598012--899999998566666999999999765 Q gi|254780964|r 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG--IAEQYQYIMRDESLHLNFGIDVINQIK 246 (352) Q Consensus 182 ~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g--~~~~i~~I~RDE~lH~~f~~~l~~~l~ 246 (352) ++.|+.=+ +-|++-| ||||...-=+.|+++=+. +++++++-+|||++|..|.-.-++++. T Consensus 77 k~~FieFL-~~SctaE----FSGflLYkEl~r~~~n~~PVva~lf~lMARDEARHAGFlN~AL~~~~ 138 (344) T TIGR02029 77 KQEFIEFL-ERSCTAE----FSGFLLYKELERRLKNEDPVVAELFQLMARDEARHAGFLNKALKDFG 138 (344) T ss_pred HHHHHHHH-HHHHHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999-9998988----77779999973057898717899976521255566778988888715 No 21 >cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub Probab=96.05 E-value=0.13 Score=30.21 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=74.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998643333455666401330577999999999999997789999999971464699999997200189877889999 Q gi|254780964|r 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 (352) Q Consensus 86 l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~ 165 (352) |..+..++......+ ..+...++.|+++..+..++.+|..|.+....++..++..+... +.. .... T Consensus 3 L~~~l~~E~~a~~~Y-~~~a~~~~~~~~~~~~~~~a~eE~~H~~~l~~~~~~l~~~p~~~-------~~~------~~~~ 68 (130) T cd00657 3 LNDALAGEYAAIIAY-GQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLP-------PAH------LLAA 68 (130) T ss_pred HHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CHH------HHHH T ss_conf 889999999999999-99998889977999999999999999999999999808988887-------503------3330 Q ss_pred HHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 974012101026777401499999999740001--4441147889989975980128999999985666669999999 Q gi|254780964|r 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG--MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 (352) Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEG--i~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l 241 (352) ..... ...+.. .++...+..|. +-+|..+ ...-.=+.+.+++..|.+||..|...+..+ T Consensus 69 ~~~~~-------~~~~~~----~~l~~~~~~E~~a~~~y~~~------~~~~~d~~~~~~~~~i~~dE~~H~~~~~~~ 129 (130) T cd00657 69 YALPK-------TSDDPA----EALRAALEVEARAIAAYREL------IEQADDPELRRLLERILADEQRHAAWFRKL 129 (130) T ss_pred CCCCC-------CCCCHH----HHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00145-------899999----99999999999999999999------987288999999999999999999999966 No 22 >cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1 Probab=95.96 E-value=0.078 Score=31.75 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=63.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH Q ss_conf 999999999999997789999999971-4646999999972001898778899999740121010267774014999999 Q gi|254780964|r 112 ECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352) Q Consensus 112 E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352) -...+...|..+|+.|+..-...+-.- ..|+.++-. .+...+. .+..++-..-....+ T Consensus 94 ~W~~Wv~~WTAEEnRHg~~Lr~YL~~tr~VDp~~lE~---------~r~~~i~------------~G~~~~~~~~p~~~~ 152 (297) T cd01050 94 AWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALER---------TRQYLIG------------SGFDPGTDNSPYRGF 152 (297) T ss_pred CHHHHCCCCCCCCCHHHHHHHHHEEECCCCCHHHHHH---------HHHHHHH------------CCCCCCCCCCHHHHH T ss_conf 2565206526442403788863100056778299999---------9999983------------788999987789999 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 997400014441147889989975980-----12899999998566666999999999765537542 Q gi|254780964|r 191 VFYVVFEGMWFYTGFAQILSLGRANKM-----VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 (352) Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m-----~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352) +|..+-|- |+.-+-+..|++ |-++++...|+.||.+|..|...++..+.+-+|.- T Consensus 153 ~YtsfQEl-------AT~IsH~Nt~rla~~gDp~l~~i~~rIA~DE~rH~~fYr~iv~~~le~dPd~ 212 (297) T cd01050 153 VYTSFQEL-------ATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDG 212 (297) T ss_pred HHHHHHHH-------CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99999875-------0133362388875059979999998875168899999999999998339367 No 23 >PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Probab=95.91 E-value=0.15 Score=29.80 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=125.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971464699999997200 Q gi|254780964|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 (352) Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~ 153 (352) |++.-|..+.+.++..+.++. ||--+-.+-+...+.-.-++.+..-...|+=|..---...++||.+.+++++....-+ T Consensus 36 MP~~YR~~L~R~i~qHAhSEI-vG~lpE~~Wi~rAPsL~rK~~llAKVQDE~GHg~~ly~aaEtLG~~Reel~~~l~~g~ 114 (316) T PRK13778 36 MPDAYRKTLIRQISQHAHSEI-VGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELIDDLHSGK 114 (316) T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCC T ss_conf 889999999999999877788-8357454510038757788999999753101699999999980999999999985585 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 18987788999997401210102677740149999999974000144411478899899759801289999999856666 Q gi|254780964|r 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 (352) Q Consensus 154 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~l 233 (352) . |.-.+.. .+-.....-.++. -++.|.-... --.| .+.-.---+.....|++.|+. T Consensus 115 ~---KyssiFn---------------ypt~twAD~g~ig-wLvDgAAi~n----Q~~l-~~~SYgPYaRAm~RIckEEsF 170 (316) T PRK13778 115 A---KYSSIFN---------------YPTLTWADVGVIG-WLVDGAAIMN----QVPL-CRCSYGPYARAMVRICKEESF 170 (316) T ss_pred C---CCCCCCC---------------CCCCHHHHHHHHH-HHHHHHHHHH----HHHH-HCCCCHHHHHHHHHHHHHHHH T ss_conf 1---0220157---------------7641199999999-9850688873----3554-037842699999999988878 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCCHHHH-HHHHHH Q ss_conf 6999999999765537542206789999999999998768868875188--------------8479998999-999999 Q gi|254780964|r 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK--------------GFVGLNAPSC-EQYMQF 298 (352) Q Consensus 234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~-~~yi~y 298 (352) |..-|-.++..+.+-. .+-++|+.+|++-=--=+-..|+. ++-.-|-+++ ..||.- T Consensus 171 H~RqG~~i~~~la~GT---------~~Qk~M~QdAvnRWW~p~LmmFGPpD~~s~~s~q~m~w~IK~~sNDeLRQ~Fvd~ 241 (316) T PRK13778 171 HQRQGYEILLALAKGT---------PAQKAMVQDALNRWWWPALMMFGPPDADSPHSAQSMAWKIKRFSNDELRQKFVDA 241 (316) T ss_pred HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCEEEEECCCCHHHHHHHHHH T ss_conf 9870899999998199---------9999999999999899888753889868897113102111247879999999999 Q ss_pred HHHHHHHHCCCCCC-----CCCC-----CCCHHH--HHHHHCCCCC Q ss_conf 99999997887988-----9998-----883257--8997178867 Q gi|254780964|r 299 IANRRCHQIGLEPL-----FKYT-----ENPFPW--MSEVIDLKKE 332 (352) Q Consensus 299 ~an~rL~~lG~~~~-----f~~~-----~nP~~W--~~~~~~~~~~ 332 (352) .--.+..||+.-. |+.. -.|++| |-..+.+++- T Consensus 242 -~VPqa~~lGltvPD~~L~~nee~G~~~~~~iDW~ef~~vi~g~Gp 286 (316) T PRK13778 242 -TVPQAEVLGLTLPDPDLKWNEERGHYDFGEIDWDEFKEVIKGNGP 286 (316) T ss_pred -HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf -878999808757980124565669855789998999999828997 No 24 >cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis Probab=95.76 E-value=0.17 Score=29.40 Aligned_cols=215 Identities=12% Similarity=0.087 Sum_probs=141.2 Q ss_pred HHHHHHHHCCCCCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHH Q ss_conf 999999945798703--674798998520268998999999999999986433334556664013305779999999999 Q gi|254780964|r 44 EKYLSACNNHWMPTE--VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 (352) Q Consensus 44 ~ly~k~~~~fW~peE--i~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~ 121 (352) .-|-++++.-+.--| ++.-+..... ..|++.-+.++...++-+...+-...-+.. .+.......-+..+..+|+ T Consensus 64 ~tY~~~qa~~e~~~~~~~~~~~~~g~~---~~l~~~w~~~l~~~l~p~r~~e~gl~m~~a-~~~~~~~~~~i~~a~~f~a 139 (304) T cd01058 64 RTYVQMRAEQERYVERLFEFAEKRGLA---EALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQA 139 (304) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHH T ss_conf 999998889999999999999977962---007999999999986005399999877788-8984555099999999998 Q ss_pred HHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf 999977899999999714646-----999999972001898778899999740121010267774014999999997400 Q gi|254780964|r 122 FEEAVHSHTFQYIITSLGLDE-----GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 (352) Q Consensus 122 ~~E~iH~~sYs~il~~l~~~~-----~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 196 (352) +.+..|++--+++...|..+. +.-=..+.++|.-+.--+++.+.... ..-.+.+++.++++ T Consensus 140 ~D~Lr~aQ~i~~~~~~L~~~~~~~~~~~~k~~W~~dp~WQ~~R~~vE~~l~~--------------~Dw~E~~vA~nlv~ 205 (304) T cd01058 140 MDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVT--------------YDWGEAFVAQNLVF 205 (304) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH--------------CCHHHHHHHHHHHH T ss_conf 8886799999999998465689877268999883084013189999999861--------------35599999998879 Q ss_pred CHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0144---4114788998997598012899999998566666999999999765537542206789999999999998768 Q gi|254780964|r 197 EGMW---FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 (352) Q Consensus 197 EGi~---Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~ 273 (352) |+++ |++.|.-... .+| =.-+..++.....|...|...+..+++.+.++.|+ ....+..++.+-...+.+.=. T Consensus 206 d~ll~~L~~~~f~~~a~--~~G-d~~t~~l~~~~~~d~~r~~~w~~alvk~~~~~~~~-Nr~~l~~Wi~~W~~~a~~Al~ 281 (304) T cd01058 206 DPLVGELVRRELDRLAA--SNG-DTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH-NRALLQGWLEKWRPRALAALA 281 (304) T ss_pred HHHHHHHHHHHHHHHHH--HCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHH T ss_conf 98879999999999999--869-95139999999999999999999999999814856-899999999999999999999 Q ss_pred HHHHHHCC Q ss_conf 86887518 Q gi|254780964|r 274 AYAHETMP 281 (352) Q Consensus 274 ~~~~~~~~ 281 (352) .++. +++ T Consensus 282 ~~~~-~~~ 288 (304) T cd01058 282 ALAI-ALS 288 (304) T ss_pred HHHH-HHH T ss_conf 9999-986 No 25 >COG3396 Uncharacterized conserved protein [Function unknown] Probab=95.69 E-value=0.18 Score=29.21 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=133.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971-46469999999720 Q gi|254780964|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV 152 (352) Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~ 152 (352) ++++-+..+.+.++.++-.+-+.+.-.. .=....|.-|.+..++.....|.-|..-+-.+.+.| |+..++.+...++- T Consensus 12 ~p~~~~~tLi~~i~~~ad~elv~~~r~~-eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g 90 (265) T COG3396 12 MPEAYRRTLIRLISQLADSELVLALREG-EWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDG 90 (265) T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 7999999999999983216888724578-631468608999999999899886899999999996698759899998642 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHH Q ss_conf 018987788999997401210102677740149999999974000144411478899899-7598012899999998566 Q gi|254780964|r 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDE 231 (352) Q Consensus 153 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE 231 (352) .. |-+.+.+ ++.. ...-. ++ --|||-+++++..-. +.--.+-++.+...|++.| T Consensus 91 ~~---k~n~~~n----~P~~-----------~Wadt-~~------~~fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe 145 (265) T COG3396 91 RH---KRNSLFN----LPTG-----------DWADT-IV------RGFLVDGAAIYQLEALADSSYGPLARAAQKICKEE 145 (265) T ss_pred HH---HHHHHHH----CCCC-----------CHHHH-HH------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 88---8888870----8886-----------58888-78------88788478999899987665367999999999868 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6669999999997655375422067899999999999987------6886887518884799989999999999999999 Q gi|254780964|r 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL------EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 (352) Q Consensus 232 ~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~------E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~ 305 (352) ..|..++...+..+.+..++-- ...++.+-..+..+++. +.+-.-+ .-|+.-.+.+.+.+=-.-..+..|. T Consensus 146 ~fHl~~~~~~l~~l~~gT~~~~-~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~--~~gI~~~~n~~Lrq~~i~~~~~~l~ 222 (265) T COG3396 146 EFHLRHGKTWLKRLANGTEESR-QMAQAALNRWWPRALEMFGPSASESELSAA--KWGIKVDPNDELRQAWIKEVNEELR 222 (265) T ss_pred HHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999998999999983578899-999999999989999883866443324788--7288779789999999999999999 Q ss_pred HCCCCCC-----CCC-----CCCCHHHHHHHH Q ss_conf 7887988-----999-----888325789971 Q gi|254780964|r 306 QIGLEPL-----FKY-----TENPFPWMSEVI 327 (352) Q Consensus 306 ~lG~~~~-----f~~-----~~nP~~W~~~~~ 327 (352) .+|+.-. ++. ++.+.+|.+... T Consensus 223 ~~gltvPd~~l~~n~~~g~h~~~~~~~l~~~q 254 (265) T COG3396 223 ELGLTVPDPNLHYNGKRGHHTEHLGDWLAEMQ 254 (265) T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 71677786111256545876665043999999 No 26 >cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. Probab=95.60 E-value=0.028 Score=34.79 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=52.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 6789999999999998768868875188847999899999999999999997887988999 Q gi|254780964|r 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 (352) Q Consensus 255 ~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~ 315 (352) ++..+.+.+.+.++++++.+.+.++.+....|+-..+++.|++|++|+.+++||+-..... T Consensus 209 p~~~d~~~e~~~el~~~av~~~~~~~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i~~~~~ 269 (280) T cd07911 209 DANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYIERARG 269 (280) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 5678999999999999999999999851565566889999999999999987448878529 No 27 >PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Probab=95.52 E-value=0.045 Score=33.36 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=115.9 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 852026899899999999999998643333455666401330--577999999999999997789999999971464699 Q gi|254780964|r 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 (352) Q Consensus 67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e 144 (352) +|.. |+++.|..+.--|--=..++ --|+-+-.-+.+.+ ++|++..++...+-.|+.|+-.-+..+.-+|..-+ T Consensus 70 ~~~~---l~~~~r~~f~dfL~~SctsE-FSG~lLykEl~rr~k~~np~l~e~F~~MaRDEaRHAGFlN~am~df~i~lD- 144 (351) T PRK13654 70 DWDH---LDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLD- 144 (351) T ss_pred HHHH---CCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC- T ss_conf 6784---99999999999999876766-012369999998703378189999999864377777789999998195302- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHH-HHCCHHHHHHHHHHHH-HHHHC--CCCCHH Q ss_conf 9999972001898778899999740121010267774014999999997-4000144411478899-89975--980128 Q gi|254780964|r 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGFAQIL-SLGRA--NKMVGI 220 (352) Q Consensus 145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~ 220 (352) -..+.++-.| +.-.++ -|.|+ .+-|.|- |.-+..+| .|.++ ..+--+ T Consensus 145 -------LgfLtk~k~Y----------------TfF~Pk-----fI~YatYLSEKIG-Y~RYItIyRHLe~hPe~r~~Pi 195 (351) T PRK13654 145 -------LGFLTKKKKY----------------TFFPPK-----FIFYATYLSEKIG-YWRYITIYRHLEKHPEHRIHPI 195 (351) T ss_pred -------HHHHHCCCCE----------------EEECCC-----EEEHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHH T ss_conf -------5766356622----------------664664-----2431448776540-6787799999886921033538 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHH Q ss_conf 999999985666669999999997655375422067-89999999999998768868875188---84799989999999 Q gi|254780964|r 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYM 296 (352) Q Consensus 221 ~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi 296 (352) -+=++-=+.||.+|+.+...|++ .+|++.+.. ..=|++=.+..++ . .-|+.+.-.. ..+||++.+....| T Consensus 196 F~~Fe~WCqDE~RHGd~F~~lmr----a~P~ll~g~~~klW~RFFLlaVf-a-TMylrD~~R~~Fy~aLGlD~~eYD~~V 269 (351) T PRK13654 196 FKFFENWCQDENRHGDFFALLMR----AQPKLLKGWVNKLWSRFFLLAVF-A-TMYLRDHERPDFYEALGLDAREYDQEV 269 (351) T ss_pred HHHHHHHHCCHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH-H-HHEEECCCCHHHHHHHCCCHHHHHHHH T ss_conf 99999984231241789999996----29675423778999999999998-8-722211264878998599979987999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 99999999978879889998883 Q gi|254780964|r 297 QFIANRRCHQIGLEPLFKYTENP 319 (352) Q Consensus 297 ~y~an~rL~~lG~~~~f~~~~nP 319 (352) =-..|....++ ++-..++ +|| T Consensus 270 ir~Tne~s~qv-FPvvLdv-d~P 290 (351) T PRK13654 270 IRKTNETSARV-FPVVLDV-DDP 290 (351) T ss_pred HHHHHHHHHHH-CCEEECC-CCH T ss_conf 99973887864-7853238-886 No 28 >cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants. Probab=95.23 E-value=0.069 Score=32.10 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=109.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 899899999999999998643333455666401330--577999999999999997789999999971464699999997 Q gi|254780964|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 (352) Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~ 150 (352) .++++.|..+.--|--=..++ --|+.+-.-+.+.+ ++|++..++...+-.|+.|+-.-+..+.-++..-+ T Consensus 55 ~~~~~~r~~f~dfL~~SctsE-FSG~lLykEl~rr~k~~nP~l~e~f~~MaRDEaRHAGFlN~al~d~~~~lD------- 126 (323) T cd01047 55 KIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALD------- 126 (323) T ss_pred CCCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------- T ss_conf 089889999999999876776-012368999998742379079999999865477777678899998495202------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHC--CCCCHHHHHHHHH Q ss_conf 20018987788999997401210102677740149999999974000144411478899-89975--9801289999999 Q gi|254780964|r 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRA--NKMVGIAEQYQYI 227 (352) Q Consensus 151 ~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~~~~i~~I 227 (352) -..+.++-.| . .-.++-+..+ ...-|.|- |.-+..+| .+.++ ..+--+-+=++-= T Consensus 127 -LgfLtk~k~Y-----T-----------~F~pkfI~Ya----tYLSEKIG-Y~RYItIyRhLe~~Pe~rf~PiF~~Fe~W 184 (323) T cd01047 127 -LGFLTKTRKY-----T-----------FFKPKFIFYA----TYLSEKIG-YWRYITIYRHLERNPENQFHPIFKYFENW 184 (323) T ss_pred -HHHHCCCCCE-----E-----------EECCCEEEEH----HHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf -4765166732-----6-----------6576045403----46665431-67887999999869110236079989988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHH Q ss_conf 85666669999999997655375422067-89999999999998768868875188---847999899999999999999 Q gi|254780964|r 228 MRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRR 303 (352) Q Consensus 228 ~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi~y~an~r 303 (352) +.||.+|+.+...|++ .+|++++.. ..=|++=.+..++ . .-|+.+.-.. ..+||++.+....|=-..|.. T Consensus 185 CqDE~RHGd~F~~lmr----a~P~ll~~~~~~lw~RFFllaVf-a-Tmyl~d~~R~~Fy~alGlD~~~yD~~Vir~TNe~ 258 (323) T cd01047 185 CQDENRHGDFFAALLR----AQPHLLNDGKNKLWIRFFLLSVY-A-TMYLNDHQRPDFYEALGLDTTEFDMHVIRETNET 258 (323) T ss_pred HCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH-H-HEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 5341241799999996----48655522368999999999998-7-2154104617789986999799729999996187 Q ss_pred HHHCCCCCCCCCCCCC Q ss_conf 9978879889998883 Q gi|254780964|r 304 CHQIGLEPLFKYTENP 319 (352) Q Consensus 304 L~~lG~~~~f~~~~nP 319 (352) ..++ +|-..++ +|| T Consensus 259 s~rv-FPvvLDv-d~P 272 (323) T cd01047 259 AARV-FPAVLDV-DNP 272 (323) T ss_pred HHHH-CCEEEEC-CCH T ss_conf 7864-8854417-886 No 29 >CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Probab=94.99 E-value=0.091 Score=31.28 Aligned_cols=212 Identities=17% Similarity=0.228 Sum_probs=111.6 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 8520268998999999999999986433334556664013305--77999999999999997789999999971464699 Q gi|254780964|r 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 (352) Q Consensus 67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~--~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e 144 (352) +|.. |+++-|..+.--|--=..++ --|+.+-.-+.+.+. +|.+..++...+-.|+.|+-.-+..+.-++..-+ T Consensus 66 ~~~~---l~~~~r~~FidfL~~SctsE-FSG~lLykEl~rr~k~~nP~l~e~f~~MaRDEaRHAGFlNkam~df~~~lD- 140 (349) T CHL00185 66 SWSN---LDEKTKQLFIEFLERSCTAE-FSGFLLYKELSRKLKDRNPLLAECFLLMSRDEARHAGFLNKAMADFNLSLD- 140 (349) T ss_pred HHHH---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC- T ss_conf 6773---99999999999999876776-012369999998713379079999999876577787889999998495202- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHC--CCCCHHH Q ss_conf 99999720018987788999997401210102677740149999999974000144411478899-89975--9801289 Q gi|254780964|r 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRA--NKMVGIA 221 (352) Q Consensus 145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~~ 221 (352) -..+.+.-.| +.-.++=+..+ ..+-|.|- |.-+..+| .|.++ ..+--+- T Consensus 141 -------LgfLtk~k~Y----------------TfF~PkfI~Ya----tYLSEKIG-Y~RYItIyRhLe~~Pe~r~~PiF 192 (349) T CHL00185 141 -------LGFLTKSRKY----------------TFFAPKFIFYA----TYLSEKIG-YWRYITIYRHLEKHPEHRIYPIF 192 (349) T ss_pred -------HHHHCCCCCE----------------EEECCCEEEHH----HHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHH T ss_conf -------4765056612----------------65464401135----58776542-67887999998869100226389 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHH Q ss_conf 99999985666669999999997655375422067-89999999999998768868875188---847999899999999 Q gi|254780964|r 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQ 297 (352) Q Consensus 222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi~ 297 (352) +-++-=+.||.+|+.+...+++ .+|++++.. ..=|++=.+..++. .-|+.+.-.. ..+||++.+....|= T Consensus 193 ~~Fe~WCqDE~rHGd~F~~lmr----s~P~ll~g~~~~lw~rFFllaVfa--Tmy~~d~~R~~fy~alGld~~~yD~~Vi 266 (349) T CHL00185 193 KFFENWCQDENRHGDFFAALLK----SQPHLLNGWKSKLWCRFFLLSVFA--TMYLNDFQRIDFYAAIGLDARQYDMQVI 266 (349) T ss_pred HHHHHHHCCCHHHHHHHHHHHH----CCHHHHHCHHHHHHHHHHHHHHHH--HEEEECCCCHHHHHHHCCCHHHHHHHHH T ss_conf 9999984330240799999996----496655054689999999999987--4043103608799986999789709999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCC Q ss_conf 9999999978879889998883 Q gi|254780964|r 298 FIANRRCHQIGLEPLFKYTENP 319 (352) Q Consensus 298 y~an~rL~~lG~~~~f~~~~nP 319 (352) -..|....++ ++-..++ .|| T Consensus 267 ~~Tne~s~rv-FP~~Ldv-d~P 286 (349) T CHL00185 267 RKTNESAARL-FPVVLDV-DNP 286 (349) T ss_pred HHHHHHHHHH-CCEEECC-CCH T ss_conf 9961877864-7852348-985 No 30 >pfam04305 DUF455 Protein of unknown function (DUF455). Probab=92.79 E-value=0.76 Score=24.94 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=69.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH Q ss_conf 999999997789999999971464699------99999720018987788999997401210102677740149999999 Q gi|254780964|r 118 LRQAFEEAVHSHTFQYIITSLGLDEGE------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 (352) Q Consensus 118 ~~q~~~E~iH~~sYs~il~~l~~~~~e------~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 191 (352) ..-+.+|+.|-..++.-+..+|..-.. +.++..++. ...+.++.+ T Consensus 102 ~~VA~dEa~Hf~ll~~rL~~lG~~YGd~PaH~gLW~~a~~T~-----------------------------~dllaRmAi 152 (250) T pfam04305 102 LKVADDEAKHFRLLRERLEELGSEYGDLPAHDGLWEAAEKTA-----------------------------DDLLARLAL 152 (250) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-----------------------------CCHHHHHHH T ss_conf 999999999999999999982987579710049999999853-----------------------------389999988 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9740001444114788998997598012899999998566666999999999765537 Q gi|254780964|r 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 (352) Q Consensus 192 ~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~ 249 (352) -..++|+=-+=++=.++--|.+.|- ..++.+.+-|.+||.-|+.+|..=|+.++.+. T Consensus 153 vp~vlEArGLD~tp~~~~kl~~~gD-~~sa~iL~~I~~dEI~HVa~G~rWF~~~c~~~ 209 (250) T pfam04305 153 VPRVLEARGLDATPGIIAKLEGAGD-NESAAILEVILRDEIGHVAIGNRWFRFLCERR 209 (250) T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 6888886067667899999997798-67899999999998889998799999999874 No 31 >pfam03405 FA_desaturase_2 Fatty acid desaturase. Probab=85.89 E-value=2.6 Score=21.33 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=59.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH Q ss_conf 99999999999997789999999971-46469999999720018987788999997401210102677740149999999 Q gi|254780964|r 113 CRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 (352) Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 191 (352) ...+...|..+|+.|...-+..+-.- ..|+.++-. .+.. .+.. .+..++... . .+ -++ T Consensus 100 W~~Wv~~WTAEEnRHg~~Lr~YL~ltr~VD~~~lE~---------~~~~----~i~~----G~~p~~~~~--p-y~-~~v 158 (330) T pfam03405 100 WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK---------TIQY----LIGS----GMDPGTENN--P-YL-GFI 158 (330) T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH---------HHHH----HHHC----CCCCCCCCC--C-HH-HHH T ss_conf 653217526443414789976555224678599999---------9999----9827----889987668--1-04-330 Q ss_pred HHHHCCHHHHHHHHH---HHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 974000144411478---8998997598------012899999998566666999999999765537542 Q gi|254780964|r 192 FYVVFEGMWFYTGFA---QILSLGRANK------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 (352) Q Consensus 192 ~~~~lEGi~Fys~Fa---~~~~l~~~g~------m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352) |.||- +.-+-+..|+ =|-++++...|+.||.+|..|...++..+.+-+|.- T Consensus 159 ----------YtSFQElAT~ISH~NTgrla~~~GDp~la~i~~rIAaDE~rH~~fYr~iv~~~~eldPd~ 218 (330) T pfam03405 159 ----------YTSFQERATFISHGNTARLAKEHGDTKLAQICGTIASDEKRHETAYTKIVEKLFELDPDG 218 (330) T ss_pred ----------HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf ----------455788876511411999988729989999998874337789999999999998029328 No 32 >cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio Probab=82.10 E-value=3.7 Score=20.27 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=75.2 Q ss_pred HHHHHHHHHHHH---HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999986433---33455666401330577999999999999997789999999971464699999997200189877 Q gi|254780964|r 83 KRNLGFFASSES---LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 (352) Q Consensus 83 ~~~l~~~~~~D~---~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~ 159 (352) ..++..+...|+ .+.+.+.+.+.-.-+.++++..+.-.+.+|.-|-+..+.++.-||.++.-. ..... ... T Consensus 16 ~~l~~~~gG~~gElsA~~qYl~q~~~~~~~~~~i~~ll~dIa~eEm~HlE~i~~~I~~Lgg~p~~~--~~~~~----~~~ 89 (154) T cd07908 16 ELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR--SSSSD----KFT 89 (154) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--EECCC----CCC T ss_conf 999998489616899999999989707898479999999999999999999999999918998413--03688----777 Q ss_pred HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999997401210102677740149999999974000144411478899899759801289999999856666699999 Q gi|254780964|r 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 (352) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~ 239 (352) -|-..+.. ...+....++.-+.+ =-.++..|... .+.=.=+++.++++.|+.||..|.+-+. T Consensus 90 ~wt~~yv~----------~~~~~~~~L~~diaa--E~~A~~~Y~~~------~~~i~D~~vk~~L~~ii~dE~~H~~~F~ 151 (154) T cd07908 90 YWTGKYVN----------YGESIKEMLKLDIAS--EKAAIAKYKRQ------AETIKDPYIRALLNRIILDEKLHIKILE 151 (154) T ss_pred CCCCCCCC----------CCCCHHHHHHHHHHH--HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 48875558----------899999999999999--99999999999------9976888799999999999999999999 Q ss_pred H Q ss_conf 9 Q gi|254780964|r 240 D 240 (352) Q Consensus 240 ~ 240 (352) . T Consensus 152 e 152 (154) T cd07908 152 E 152 (154) T ss_pred H T ss_conf 7 No 33 >cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz Probab=81.68 E-value=3.5 Score=20.37 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=71.0 Q ss_pred HHHHHHHHHHH---HHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999998643---333455666401330577999999999999997789999999971464699999997200189877 Q gi|254780964|r 83 KRNLGFFASSE---SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 (352) Q Consensus 83 ~~~l~~~~~~D---~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~ 159 (352) ..++..+...+ +.+.+.+.+.+.- -+.|+.+.++...+.+|.-|-+..+.++.-|+.|.. .. T Consensus 23 ~~l~e~~GG~~GElsa~~qYl~Q~~~~-~~~~~~~dll~dI~teEl~HlEml~t~I~~L~~ds~--------------G~ 87 (156) T cd01051 23 KLLQEQLGGAFGELSAAMQYLFQSFNF-REDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQ--------------GV 87 (156) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------CC T ss_conf 999998689724899999999988604-677779999999999999999999999999716889--------------99 Q ss_pred HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999997401210102677740149999999974000144411478899899759801289999999856666699999 Q gi|254780964|r 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 (352) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~ 239 (352) -|-..|.....++ ...+..++..|.- .-....-++ +.=.=||+.++++++..||..|..-.. T Consensus 88 pWt~~yv~~~gdl--------------~~dL~~niaaE~~-Ar~~y~rl~---~~~dDp~v~~~L~fL~~rE~~H~~~f~ 149 (156) T cd01051 88 PWTAAYIQSSGNL--------------VADLRSNIAAESR-ARLTYERLY---EMTDDPGVKDTLSFLLVREIVHQNAFG 149 (156) T ss_pred CCCHHHHHCCCCH--------------HHHHHHHHHHHHH-HHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 8973687068979--------------9999989999999-999999999---854981099999999998899999999 Q ss_pred HHHHH Q ss_conf 99997 Q gi|254780964|r 240 DVINQ 244 (352) Q Consensus 240 ~l~~~ 244 (352) .-+.. T Consensus 150 ~ale~ 154 (156) T cd01051 150 KALES 154 (156) T ss_pred HHHHH T ss_conf 99997 No 34 >pfam05138 PaaA_PaaC Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex. Probab=81.63 E-value=3.8 Score=20.16 Aligned_cols=193 Identities=17% Similarity=0.125 Sum_probs=116.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998643333455666401330577999999999999997789999999971---4646999999972001898778 Q gi|254780964|r 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKAN 160 (352) Q Consensus 84 ~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l---~~~~~e~f~~~~~~~~i~~k~~ 160 (352) ..+..++-.+-+.+..+. ..+...|.-|....++..+-.|.=|++.+-.+...+ |.+.+++ .-.+ .+. + T Consensus 5 ~~ll~laDd~lil~~r~s-eW~g~aP~LEediAl~ni~lD~lGhAr~ly~~a~~l~g~g~~eD~L-a~~R-~~~-----e 76 (248) T pfam05138 5 RYLLRLADSELILGQRLS-EWCGHAPSLEEDIALANIALDLLGHARLLYSYAEELEGEGRDEDDL-AFLR-DER-----E 76 (248) T ss_pred HHHHHHCCHHHHHHCCCC-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHH-HHH-----H T ss_conf 999997279999725411-3750597088999999998999999999999999852489899999-9774-455-----6 Q ss_pred HHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999997401210102677740149999999974000144411478899899-759801289999999856666699999 Q gi|254780964|r 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGI 239 (352) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE~lH~~f~~ 239 (352) |..-..-+. +...+...++ --+||+.|..+++=+ .+..-+-++.+...|++.|..|...+. T Consensus 77 frn~~l~E~-----------Pngd~a~tiv-------r~fl~d~~~~~~~~~L~~ss~~~la~ia~K~~kE~~YH~~h~~ 138 (248) T pfam05138 77 FRNLLLFEQ-----------PNGDWADTIV-------RQFLVDAAAILLLEALCRSSDGPLAAIAAKACKEESYHLRHGA 138 (248) T ss_pred HHHHHHHHC-----------CCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 656488857-----------8887999999-------9999999999999998628848999999999999999999999 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999765537542206789999999999998768868875188---------8479998999999999999999978879 Q gi|254780964|r 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK---------GFVGLNAPSCEQYMQFIANRRCHQIGLE 310 (352) Q Consensus 240 ~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~---------~~~Gl~~~~~~~yi~y~an~rL~~lG~~ 310 (352) .-+..+..- |++..+++.+-+.+ =-.|+..+|+. +.++.+.+.+.+=-.-.....|...|++ T Consensus 139 ~Wv~rLg~G-----TeEs~~rmq~Ald~----lwp~~~elF~~~~~~~~l~~~g~~~~~~~Lr~~w~~~v~~~l~~a~L~ 209 (248) T pfam05138 139 EWVLRLGDG-----TEESHRRMQDALDR----LWPYTLEMFGPDDADQALAAAGKAPDNDELRQAWLDTVVPVLEEAGLT 209 (248) T ss_pred HHHHHHHCC-----CHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999998518-----99999999999999----999987766998679999877886899999999999999999982899 Q ss_pred C Q ss_conf 8 Q gi|254780964|r 311 P 311 (352) Q Consensus 311 ~ 311 (352) . T Consensus 210 ~ 210 (248) T pfam05138 210 L 210 (248) T ss_pred C T ss_conf 9 No 35 >pfam02915 Rubrerythrin Rubrerythrin. This domain has a ferritin-like fold. Probab=77.47 E-value=5.1 Score=19.29 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=68.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998643333455666401330--577999999999999997789999999971464699999997200189877889 Q gi|254780964|r 85 NLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 (352) Q Consensus 85 ~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~ 162 (352) +|+.=..+++....-+ ..+.... ..|+++.++...+-+|..|.+....++..+..+.........-.+. T Consensus 2 ~L~~Ai~~E~~a~~~Y-~~~A~~a~~~g~~i~~~F~~lA~~E~~Ha~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 72 (137) T pfam02915 2 ILEYAIAGESSARRRY-KELAEKAKGEGPQIAELFEEMAEEERRHAGFLNKLLKDLFPGLEPVILKEHVEYT-------- 72 (137) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCC-------- T ss_conf 6999997099999999-9999999784889999999999999999999999987634665630224431111-------- Q ss_pred HHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999740121010267774014999999997400014441147889989975980128999999985666669999999 Q gi|254780964|r 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 (352) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l 241 (352) + ...+. ..... -+...+.. ...+---.|--|+ .+++.-.-+.....+..++.+|..|......+ T Consensus 73 ---~--~~~~~-----~~~~~-nl~~a~~~-a~~~e~~~y~~y~---~~A~~~~~~~~~~~f~~la~~E~~H~~~f~~l 136 (137) T pfam02915 73 ---F--FPVAD-----ELTRE-NLKEAIEG-AMLEEKEAYPFYI---EIAEKEGEEEARRLFEDLAEAEKRHEERFRKL 136 (137) T ss_pred ---C--CCCCC-----CCHHH-HHHHHHHH-HHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---1--35563-----63663-39999999-9999999999999---99988778899999999999999999999976 No 36 >COG1633 Uncharacterized conserved protein [Function unknown] Probab=74.28 E-value=6.1 Score=18.74 Aligned_cols=147 Identities=17% Similarity=0.085 Sum_probs=84.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999864333345566640133057799999999999999778999999997146469999999720018987788 Q gi|254780964|r 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 (352) Q Consensus 82 ~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~ 161 (352) +..+|+.=..++.---+-+ ..+...+++++++..+...+.+|..|.+.+..++..++.++.......-. .... T Consensus 25 ~~e~L~~Ai~~E~eA~~fY-~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~------~~~~ 97 (176) T COG1633 25 IEELLAIAIRGELEAIKFY-EELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGE------IESE 97 (176) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC------HHHH T ss_conf 9999999999799999999-99997658776999999999999999999999999866775430221010------1223 Q ss_pred HHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999740121010267774014999999997400014441147889989975980128999999985666669999999 Q gi|254780964|r 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 (352) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l 241 (352) +..+.+.+ ............+- ++ +++-.....|+.... ....=.+...++..++.||.-|..+.... T Consensus 98 ~~~~~~~~-------~~~~~~~~~~~~I~-~a--~~~E~~t~~~Y~~~~--~~~~~~~~~~~~~~~a~~E~~H~~~l~~~ 165 (176) T COG1633 98 ILEYLQPG-------KEMEKSVSYLEAIE-AA--MEAEKDTIEFYEELL--DELVNEEAKKLFKTIADDEKGHASGLLSL 165 (176) T ss_pred HCCCCCCC-------CCCCCCHHHHHHHH-HH--HHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 22446766-------21346422889999-99--999998999999999--97367889999999999998899999999 Q ss_pred HHHHHH Q ss_conf 997655 Q gi|254780964|r 242 INQIKI 247 (352) Q Consensus 242 ~~~l~~ 247 (352) ++.+.. T Consensus 166 ~~~~~~ 171 (176) T COG1633 166 YNRLTS 171 (176) T ss_pred HHHHHC T ss_conf 997741 No 37 >TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.. Probab=73.82 E-value=3 Score=20.83 Aligned_cols=77 Identities=13% Similarity=0.303 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCC Q ss_conf 789999999999998768868875188847999899999999999999997887988999-8883257899717886755 Q gi|254780964|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN 334 (352) Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~-~~nP~~W~~~~~~~~~~tn 334 (352) +-+++|-++....-++...=++-++..+ +.. .|=|-+.|+.|+.||++.+=|- .+||++||...++ - T Consensus 70 eeEkEVedLag~l~~lderGvea~~~Ga---~~S----~YQK~Rid~vCrelGlks~APLW~~dPle~~~~~V~-----e 137 (227) T TIGR00289 70 EEEKEVEDLAGQLEELDERGVEAVVIGA---IES----EYQKSRIDKVCRELGLKSIAPLWHKDPLEYLLEEVA-----E 137 (227) T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECC---EEC----CHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH-----C T ss_conf 6521176662155445530545478853---410----112335778877714100276013481799999862-----3 Q ss_pred CCCCCCCCCC Q ss_conf 5766711221 Q gi|254780964|r 335 FFETRVTEYQ 344 (352) Q Consensus 335 FFe~~~t~Y~ 344 (352) -|+.++++=+ T Consensus 138 ~F~v~iv~V~ 147 (227) T TIGR00289 138 KFEVIIVSVS 147 (227) T ss_pred CCEEEEEEEE T ss_conf 3608999998 No 38 >pfam10118 Metal_hydrol Predicted metal-dependent hydrolase. Members of this family of proteins comprise various bacterial transition metal-dependent hydrolases. Probab=73.54 E-value=6.4 Score=18.61 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=80.7 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHH Q ss_conf 9999999999-986433334556664013305779999999999999977899999999---714646999999972001 Q gi|254780964|r 79 RLMIKRNLGF-FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT---SLGLDEGELFNMYREVPS 154 (352) Q Consensus 79 k~~~~~~l~~-~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~---~l~~~~~e~f~~~~~~~~ 154 (352) ...+.+.|+. |-.+|..-.+.. -...+.+++|+++.=..-++-+|+.|++.=...++ .-|.+.+.. T Consensus 25 ~T~~~nalS~~fP~GE~fFi~sv-r~~~~~i~Dp~L~~~v~~FIgQEa~H~reH~~~n~~l~~~G~~~~~~--------- 94 (251) T pfam10118 25 ATHFFNALSLLFPAGERFFIDSV-REARPLIKDPKLAEDVRGFIGQEAMHSREHDKYNDALEAHGYDVEPY--------- 94 (251) T ss_pred HHHHHHHHHHCCCCCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH--------- T ss_conf 99999998851435549999999-99875389999999999999999999999999999999809990799--------- Q ss_pred HHHHHHHHH-HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHH Q ss_conf 898778899-99974012101026777401499999999740001444114788998997-----598012899999998 Q gi|254780964|r 155 ITAKANWAL-QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-----ANKMVGIAEQYQYIM 228 (352) Q Consensus 155 i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~-----~g~m~g~~~~i~~I~ 228 (352) .++..+.. .....+ + ....++.++.+|-+ ++-..-..|.. .|-=|.+..+..|=+ T Consensus 95 -~~~~~~~~~~~~~~~-----------~----~~~~La~taalEH~---TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa 155 (251) T pfam10118 95 -LEAREWLFLALLGKL-----------P----LREQLAATAALEHF---TAVLADWLLNNPELLRAGADPTMADLWRWHA 155 (251) T ss_pred -HHHHHHHHHHHHHCC-----------C----HHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHCCCCHHHHHHHHHHH T ss_conf -999999999987358-----------9----99999999999999---9999999964978774359999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 5666669999999997655 Q gi|254780964|r 229 RDESLHLNFGIDVINQIKI 247 (352) Q Consensus 229 RDE~lH~~f~~~l~~~l~~ 247 (352) -.|.=|-..+-.+++.+.. T Consensus 156 ~EE~EHKsVAfDVy~~v~g 174 (251) T pfam10118 156 AEEVEHKSVAFDVYQAVGG 174 (251) T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999989999999999748 No 39 >pfam05067 Mn_catalase Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyse disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese. Probab=70.37 E-value=7.5 Score=18.14 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 057799999999999999778999999997146 Q gi|254780964|r 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (352) Q Consensus 108 ~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~ 140 (352) ++.++.+.++.-.+.+|-=|-+.-+.++.-|.. T Consensus 49 ~r~~~~kdLL~dI~tEEl~HvEmvat~I~~Ll~ 81 (272) T pfam05067 49 TRDKGKKDLLMDIGTEELGHVEMIATMIARLLK 81 (272) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 898058789988778998899999999999816 No 40 >COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] Probab=51.51 E-value=5.7 Score=18.95 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=56.0 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 97400014441147889989975980128999999985666669999999997655375422067899999999999987 Q gi|254780964|r 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 (352) Q Consensus 192 ~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~ 271 (352) -++++||+.|-.||.-.-.+ ..+ .-++-...+||.+|-.=+..=.+......|.----+.-.+++.+.+..++. T Consensus 187 ~~lIIEGvHlVPg~i~~~~~-~~n-----~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~ 260 (299) T COG2074 187 EDLIIEGVHLVPGLIKEEAL-GNN-----VFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVER 260 (299) T ss_pred CCEEEEEEEECCCCCCHHHH-CCC-----EEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 53588742115002167661-355-----178999838878999999998888760596567999999999999999998 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 688688751888479998999999999999999 Q gi|254780964|r 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 (352) Q Consensus 272 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL 304 (352) -.++.--++...-+..+...+-++|.-...+.+ T Consensus 261 Are~gVPvI~n~di~etv~~il~~i~~~~~r~~ 293 (299) T COG2074 261 AREHGVPVIENDDIDETVDRILEDIRKRTVRGL 293 (299) T ss_pred HHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 886599811253199999999999999988876 No 41 >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics.. Probab=51.20 E-value=16 Score=15.87 Aligned_cols=241 Identities=18% Similarity=0.265 Sum_probs=128.1 Q ss_pred CCCHHHHHHHHHHCCCCC------HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCC-H--HCCCH Q ss_conf 367479899852026899------89999999999999-----------------8643333455666401-3--30577 Q gi|254780964|r 58 EVPMQDDLALWKSKNGLT------DDERLMIKRNLGFF-----------------ASSESLVANNIVLAIY-R--HLSNP 111 (352) Q Consensus 58 Ei~l~~D~~dw~t~~~Lt------~~Ek~~~~~~l~~~-----------------~~~D~~v~~~~~~~i~-~--~~~~~ 111 (352) +++=+.|+-.|+. |+ .++|.+++++=|+. |.+|++-.|.-+..|- . .+.-+ T Consensus 816 ~l~~~~~iF~Wrn---L~Y~v~ik~e~R~iL~~V~GwvkPG~lTALMG~SGAGKTTLLn~La~R~t~GvIT~G~~lVNG~ 892 (1466) T TIGR00956 816 GLSKSEDIFHWRN---LTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITDGDRLVNGR 892 (1466) T ss_pred CCCCCCCEEEEEC---CEEEEEECCCCEEECCCCCEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCEEEECCC T ss_conf 5788765457515---4066543047405315753278778576515788763578886443304321770571550884 Q ss_pred HH-HHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH Q ss_conf 99-99999999999--977899999999714646999999972001---8987788999997401210102677740149 Q gi|254780964|r 112 EC-RQYLLRQAFEE--AVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 (352) Q Consensus 112 E~-~~~l~~q~~~E--~iH~~sYs~il~~l~~~~~e~f~~~~~~~~---i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352) .+ ..|--..++-+ -||.+.-. .= +.-.|.|++..|. ..+|++|+.+.++.+.-. .+ T Consensus 893 ~lD~sF~R~iGYvQQQD~Hl~~~T-VR------EaL~FSA~LRqP~~vs~~EK~~YVe~vI~lLEMe-----------~Y 954 (1466) T TIGR00956 893 PLDSSFQRSIGYVQQQDLHLETST-VR------EALRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-----------SY 954 (1466) T ss_pred CCCCCCCCCCCCEEECCEECCCCH-HH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCH-----------HH T ss_conf 557555744132454221224202-88------9999999845985678653246888887664101-----------02 Q ss_pred HHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHCCCCC- Q ss_conf 999999974000-14441147889989975980128999999985-------66---6669999999997655375422- Q gi|254780964|r 186 LQDLFVFYVVFE-GMWFYTGFAQILSLGRANKMVGIAEQYQYIMR-------DE---SLHLNFGIDVINQIKIENPHLW- 253 (352) Q Consensus 186 ~~~~i~~~~~lE-Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R-------DE---~lH~~f~~~l~~~l~~E~p~l~- 253 (352) +.+++- +.-| | |+--.|++ +.=++++++| || +|=.+-+-.+++.+++==.+.. T Consensus 955 aDAvVG--~pG~tG----------LNVEQRKR---LTIGVELvAkPkLL~FLDEPTSGLDSQtAWsi~~l~RKLad~GQa 1019 (1466) T TIGR00956 955 ADAVVG--VPGETG----------LNVEQRKR---LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLLRKLADHGQA 1019 (1466) T ss_pred CCEEEE--CCCCCC----------CCHHHHHH---HHHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCE T ss_conf 211351--567788----------87323210---103343221632000215889705589999999999988755983 Q ss_pred ---C-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC Q ss_conf ---0-6789999999999998768868875188847999899999999-9999999978879889998883257899717 Q gi|254780964|r 254 ---T-KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ-FIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 (352) Q Consensus 254 ---~-~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~-y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~ 328 (352) | .-.-+.+.+-|++.+-|-+. ..-++ -|.+|=+...|.+|=+ -. |-++.=+ +.||-.||-+.++ T Consensus 1020 ILCTIHQPSA~L~~eFDrLLlLqkG-G~TvY-FGdlG~n~~T~inYFEa~h--------GA~kCp~-~~NPAEwmLeViG 1088 (1466) T TIGR00956 1020 ILCTIHQPSAILFEEFDRLLLLQKG-GQTVY-FGDLGENSKTLINYFEAKH--------GAPKCPE-DANPAEWMLEVIG 1088 (1466) T ss_pred EEECCCCHHHHHHHHHHHHHHHHCC-CEEEE-ECCCCHHHHHHHHHHHHHC--------CCCCCCC-CCCCHHHHHHHHC T ss_conf 8860430248999986289775428-80687-2751313589998886653--------7889858-8763455877744 Q ss_pred CCC----CCCCCCC--CCCCCCC Q ss_conf 886----7555766--7112210 Q gi|254780964|r 329 LKK----EKNFFET--RVTEYQQ 345 (352) Q Consensus 329 ~~~----~tnFFe~--~~t~Y~k 345 (352) +.- +-||||. .+.+|+. T Consensus 1089 AApga~~~~Dy~E~W~nS~ey~~ 1111 (1466) T TIGR00956 1089 AAPGAKANQDYHEVWRNSSEYQA 1111 (1466) T ss_pred CCCCCCCCCHHHHHHCCCHHHHH T ss_conf 68777633006756258388999 No 42 >COG4902 Uncharacterized protein conserved in archaea [Function unknown] Probab=48.17 E-value=18 Score=15.56 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=54.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHH Q ss_conf 99999985666669999999997655375422067---899999999999987688688751888--4799989999999 Q gi|254780964|r 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYM 296 (352) Q Consensus 222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~---~~~~i~~~~~eave~E~~~~~~~~~~~--~~Gl~~~~~~~yi 296 (352) .+++-|+.-|..|......|+...--..|.-.+.. ...+..++..+.|+.-..-..+++..| +..++..+++.++ T Consensus 78 ~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~~~siGvF~NpelqeLYn~Lve~Gs~S~vDALKVGa~IEe~DI~DLE~wl 157 (189) T COG4902 78 PIFRNIAASEQEHMDAVKSLLEKYNVQDPASTTSIGVFTNPELQELYNQLVEQGSVSRVDALKVGAIIEEKDIRDLEAWL 157 (189) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCHHHHHHHH T ss_conf 88888888688889999999998099998766743004688899999999983653567677750102033377899998 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780964|r 297 QFIAN 301 (352) Q Consensus 297 ~y~an 301 (352) --.-| T Consensus 158 ~ktdN 162 (189) T COG4902 158 AKTDN 162 (189) T ss_pred HHCCC T ss_conf 51775 No 43 >pfam11251 DUF3050 Protein of unknown function (DUF3050). This bacterial family of proteins has no known function. Probab=47.89 E-value=18 Score=15.53 Aligned_cols=171 Identities=16% Similarity=0.239 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCC--CHHHHHHHHHHHHHH-H-H--------HHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99999986433334556664013305--779999999999999-9-7--------7899999999714646999999972 Q gi|254780964|r 84 RNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAFEE-A-V--------HSHTFQYIITSLGLDEGELFNMYRE 151 (352) Q Consensus 84 ~~l~~~~~~D~~v~~~~~~~i~~~~~--~~E~~~~l~~q~~~E-~-i--------H~~sYs~il~~l~~~~~e~f~~~~~ 151 (352) -+--|-+.+-++| ..+++.=.||+| +|+++-+.+-....| + + |=+.|-.-++.+|-+...+-..+.. T Consensus 27 AVWDFMSLlK~LQ-~~ltc~~~PW~P~~~~~~~RlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GA~t~~I~~fi~~ 105 (232) T pfam11251 27 AVWDFMSLLKALQ-QQLTCTTVPWVPPGNPELRRLINEIVLAEESDENLDGEHQSHFELYLDAMREVGADTSKIEAFLKL 105 (232) T ss_pred HHHHHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 8716989999999-853378888789998159999999986530365779881149999999999938991789999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHH----------- Q ss_conf 001898778899999740121010267774014999999997400014441147889989975980128----------- Q gi|254780964|r 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI----------- 220 (352) Q Consensus 152 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~----------- 220 (352) .. .- ..+..-.+ ........+.|+... |.++-.|-.- --|..|.|+|....|.+ T Consensus 106 l~---~g-~~~~~al~-------~~~~p~~~~~Fv~~T--f~~i~~~~~H--~iAaaFtfGREdlIPdMF~~Il~~l~~~ 170 (232) T pfam11251 106 VQ---SG-TSVFEALA-------QADLPEPAARFLRFT--FELIESGKPH--EIAAAFTFGREDLIPDMFRAILDELNIP 170 (232) T ss_pred HH---CC-CCHHHHHH-------HCCCCHHHHHHHHHH--HHHHHCCCHH--HHHHHHHHCCCCCHHHHHHHHHHHHCCC T ss_conf 87---58-99999987-------648998999999988--9999779867--8998887156443499999999973378 Q ss_pred ----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf ----9999----999856666699999999976553754220678999999999999876886 Q gi|254780964|r 221 ----AEQY----QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 (352) Q Consensus 221 ----~~~i----~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~ 275 (352) ...+ +.|--|+..|+..+..++..++.+++..| +++.+...+|++.-+++ T Consensus 171 ~~~~~~f~yYL~RHIElDgd~HGPlA~kml~~LCg~D~~kw-----~EA~~aa~~AL~~Ri~l 228 (232) T pfam11251 171 ETQLPTFRYYLERHIELDGDEHGPLALQMLAELCGDDPQKW-----QEVEQAAIQALEARIAL 228 (232) T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHH T ss_conf 64328999999998326776565899999999978899999-----99999999999999986 No 44 >TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis.. Probab=47.82 E-value=18 Score=15.58 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHH---HHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH Q ss_conf 9985666669999999997655375--422067---89999999999998768868875-18884799989999999999 Q gi|254780964|r 226 YIMRDESLHLNFGIDVINQIKIENP--HLWTKE---FQQKSRTMLHEATLLEIAYAHET-MPKGFVGLNAPSCEQYMQFI 299 (352) Q Consensus 226 ~I~RDE~lH~~f~~~l~~~l~~E~p--~l~~~~---~~~~i~~~~~eave~E~~~~~~~-~~~~~~Gl~~~~~~~yi~y~ 299 (352) -|.||+-.|.+|...+-......+| ..++++ +-++...++.-|.|+ ++..+.- +..+++ .+=++.+ T Consensus 61 ~i~~~~l~~~RF~~~~~~l~~~~D~qi~~l~~~yl~~l~~~~~L~pGA~el-~~~L~~~d~~l~iv-------tNG~~~~ 132 (233) T TIGR02254 61 KITKDELVLTRFEELLKELNTEADEQILKLNKEYLEFLEEKARLLPGALEL-MEALQKKDLRLYIV-------TNGVREV 132 (233) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHCCCCCEEEEE-------ECCHHHH T ss_conf 866788989999999987077677889999999999987320237007999-99870077137888-------7770667 Q ss_pred HHHHHHHCCCCCCCC Q ss_conf 999999788798899 Q gi|254780964|r 300 ANRRCHQIGLEPLFK 314 (352) Q Consensus 300 an~rL~~lG~~~~f~ 314 (352) =.+||...|+.|.|+ T Consensus 133 Q~~rl~~~gL~~Ff~ 147 (233) T TIGR02254 133 QEKRLRKSGLAPFFD 147 (233) T ss_pred HHHHHHHCCCCHHHH T ss_conf 778876347721051 No 45 >COG3546 Mn-containing catalase [Inorganic ion transport and metabolism] Probab=47.19 E-value=18 Score=15.46 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 7799999999999999778999999997146 Q gi|254780964|r 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (352) Q Consensus 110 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~ 140 (352) .+-.+.++.-.+.+|-=|-+.-+.++..|.. T Consensus 51 ~~~~~dll~DI~TEEl~HlEmvat~I~~L~~ 81 (277) T COG3546 51 DAKYKDLLMDIGTEELSHLEMVATMINLLNK 81 (277) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5379999998647888899999999999956 No 46 >PTZ00301 uridine kinase; Provisional Probab=44.15 E-value=18 Score=15.53 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=53.2 Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 400014441147889989975980128999999-9856666699999999976553--7542206789999999999998 Q gi|254780964|r 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL 270 (352) Q Consensus 194 ~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~-I~RDE~lH~~f~~~l~~~l~~E--~p~l~~~~~~~~i~~~~~eave 270 (352) +++||++-+.- +.+.+.+++ |--|-.....+...+.|.+.+= .++-.-+...+.++-++++.++ T Consensus 110 IIvEGi~~l~~-------------~~lr~l~DlkIFvd~~~dirl~RRi~RDv~eRGr~~e~Vi~qy~~~V~P~~~~fI~ 176 (210) T PTZ00301 110 LIVEGILLFTN-------------AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVE 176 (210) T ss_pred EEEEEEHHCCC-------------HHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCC T ss_conf 99971043078-------------98997742457734872378899888778875889999999999662305887680 Q ss_pred HHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHH Q ss_conf 7688688751888479-998999999999999 Q gi|254780964|r 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIAN 301 (352) Q Consensus 271 ~E~~~~~~~~~~~~~G-l~~~~~~~yi~y~an 301 (352) =-+.|++-+.|.|... ...+.+.+.|++..+ T Consensus 177 P~k~~ADiIIp~~~~n~va~~~i~~~i~~~l~ 208 (210) T PTZ00301 177 PSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210) T ss_pred HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHH T ss_conf 51633618978999863199999999999985 No 47 >pfam09968 DUF2202 Uncharacterized protein domain (DUF2202). This domain, found in various hypothetical archaeal proteins, has no known function. Probab=43.87 E-value=21 Score=15.12 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H-HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHH Q ss_conf 99999998566666999999999765537542206--7-899999999999987688688751888--479998999999 Q gi|254780964|r 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK--E-FQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQY 295 (352) Q Consensus 221 ~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~--~-~~~~i~~~~~eave~E~~~~~~~~~~~--~~Gl~~~~~~~y 295 (352) ..++.-|+|-|..|......|+...--++|-.-+. . ....+.++....++.=..-...++..| +..++..|+..+ T Consensus 28 ~~iF~NIa~SEq~HmdaV~~Ll~~Y~l~dP~~~~~~G~F~npelQ~LYn~L~~~G~~S~~dAL~VGa~IEelDI~DL~~~ 107 (162) T pfam09968 28 LPVFLNIARSEQTHMDAVKSLLDKYGLEDPILSETVGVFTNPDLQELYNQLVEKGSKSLEDALKVGATIEDLDIYDLEEA 107 (162) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH T ss_conf 38888999989999999999999839999987786785288779999999999733528999983820222569999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780964|r 296 MQFIAN 301 (352) Q Consensus 296 i~y~an 301 (352) +.-.-| T Consensus 108 i~~t~n 113 (162) T pfam09968 108 IAETDN 113 (162) T ss_pred HHHCCH T ss_conf 985080 No 48 >cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite. Probab=42.16 E-value=22 Score=14.95 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=17.1 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899899759801289999999856666699999999 Q gi|254780964|r 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 (352) Q Consensus 206 a~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~ 242 (352) ++-.||.+.| ++|++.=+.--+..|.-|..-....+ T Consensus 24 ~ma~~~~~~~-l~g~a~ff~~~a~EEr~HA~kl~~yl 59 (156) T cd01055 24 AMAAWFDSKG-LDGFANFFRVQAQEEREHAMKFFDYL 59 (156) T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999972668-76899999999999999999999999 No 49 >COG2833 Uncharacterized protein conserved in bacteria [Function unknown] Probab=41.09 E-value=23 Score=14.84 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHH Q ss_conf 99999977899999999714646999999972001898778899999740121010267774014999999997400014 Q gi|254780964|r 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 (352) Q Consensus 120 q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi 199 (352) -+.+|+.|=+--+.-+.+||-+-.+ |.+...--.+..+ .......++.+---+||.= T Consensus 115 VA~EE~~HF~Ll~~~L~~LG~~YGD-fpaHdgLw~~a~~----------------------T~~dl~~RmalVprvLEAR 171 (268) T COG2833 115 VADEEAKHFRLLRERLKSLGYDYGD-FPAHDGLWQMAEA----------------------TANDLLARMALVPRVLEAR 171 (268) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHH----------------------HHCCHHHHHHHHHHHHHHC T ss_conf 9999989999999999981887578-8130518999987----------------------6408898865446677642 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 44114788998997598012899999998566666999999999765537 Q gi|254780964|r 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 (352) Q Consensus 200 ~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~ 249 (352) -+=+.=...--++.+|-+.. +.+.+-|.|||.-|+..|..-++-+++.. T Consensus 172 GLDatP~l~aK~~~~gD~~~-~~iLdIIlrDEigHVaiGn~Wyrflc~r~ 220 (268) T COG2833 172 GLDATPSLRAKLAETGDSEA-AAILDIILRDEIGHVAIGNKWYRFLCARR 220 (268) T ss_pred CCCCCHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCEEECHHHHHHHHHHC T ss_conf 67788789999987386488-88999997312342222559999998743 No 50 >PRK08233 hypothetical protein; Provisional Probab=36.81 E-value=26 Score=14.40 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=61.5 Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHHHHHH Q ss_conf 400014441147889989975980128999999-9856666699999999976553754-2--20678999999999999 Q gi|254780964|r 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIENPH-L--WTKEFQQKSRTMLHEAT 269 (352) Q Consensus 194 ~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~-I~RDE~lH~~f~~~l~~~l~~E~p~-l--~~~~~~~~i~~~~~eav 269 (352) +++||++.+ ..+.+.+.+++ |--|--....+...+.|.+.+.... + +-+-..+.++-|+.+.+ T Consensus 81 iIvEgil~l-------------~~~~lr~l~D~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~qY~~~VrPm~~~fv 147 (182) T PRK08233 81 IIVDYPFAY-------------LNSEMRQYIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEAL 147 (182) T ss_pred EEEEEEHHH-------------CCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999644362-------------6898997718789972868999999888887776188789999999998788999985 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 876886887518884799989999999999999 Q gi|254780964|r 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 (352) Q Consensus 270 e~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~ 302 (352) +--+.+++.+.+.. +..+.+.+-|+....+ T Consensus 148 ePsk~~ADiIId~~---~aid~i~~~i~~~l~~ 177 (182) T PRK08233 148 DTVKPNADIVLDGA---LSVEEIINQIEEELYR 177 (182) T ss_pred CHHHHCCCEEEECC---CCHHHHHHHHHHHHHH T ss_conf 70032196898586---0799999999999974 No 51 >cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins. Probab=36.50 E-value=26 Score=14.37 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=32.9 Q ss_pred HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 6401330577999999999999997789999999971464 Q gi|254780964|r 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 (352) Q Consensus 102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~ 141 (352) ..+....++|+.+-.+...+-+|..|++....++..-+.+ T Consensus 18 ~~LA~~ekd~~~reil~~lA~~E~~Ha~~W~~~l~~~~~~ 57 (125) T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999764798999999999999999999999998865788 No 52 >cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain. Probab=32.45 E-value=31 Score=13.93 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=33.6 Q ss_pred HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 64013305779999999999999977899999999714 Q gi|254780964|r 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 (352) Q Consensus 102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~ 139 (352) ..+...+++|+++.++...+-+|..|.+....+...+. T Consensus 18 ~~~a~~~~~~~~k~~f~~LA~eE~~H~~~l~~l~~~~~ 55 (139) T cd01045 18 LELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99998779889999999999999999999999986513 No 53 >KOG1883 consensus Probab=32.42 E-value=31 Score=13.93 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=53.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999997789999999971464699999997200189877889999974012101026777401499999999740 Q gi|254780964|r 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 (352) Q Consensus 116 ~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 195 (352) ++..+..-|+|.+..| .+++-++ ++|+-. .+..-.+|+.- ...+....+.++.+++.... T Consensus 853 ~~~m~~~teNIns~~y-rVLe~is--prelva------~~~tlvDyLva----------d~~t~~~~e~~l~k~~~~la- 912 (1517) T KOG1883 853 AYKMVDETENINSEFY-RVLEKIS--PRELVA------HGRTLVDYLVA----------DAKTSDCGEKTLKKCAKALA- 912 (1517) T ss_pred HHHHCCCCCCCCHHHH-HHHHHCC--HHHHHH------HHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHH- T ss_conf 9985031301478999-9998419--999999------98888888654----------43316425999999999999- Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHHHHHHHHH Q ss_conf 0014441147889989975980128999999985----6666699999999 Q gi|254780964|r 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR----DESLHLNFGIDVI 242 (352) Q Consensus 196 lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R----DE~lH~~f~~~l~ 242 (352) +.+.+.+.++-=.-+.-+|.| ||..|+-+.+.++ T Consensus 913 -------------~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~l 950 (1517) T KOG1883 913 -------------LMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLL 950 (1517) T ss_pred -------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf -------------88786501028889999953656687434199999999 No 54 >TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome. Probab=32.08 E-value=31 Score=13.89 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=26.5 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 999997655375422067899999999999987 Q gi|254780964|r 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 (352) Q Consensus 239 ~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~ 271 (352) ..||..+..++|++..+..+..|..|+++..+. T Consensus 4 SELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~a 36 (94) T TIGR00988 4 SELIERIATEQSHLFAKDVEKAVKTMLEEMIEA 36 (94) T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 788899874078755333899999999999998 No 55 >TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.. Probab=31.07 E-value=32 Score=13.78 Aligned_cols=157 Identities=16% Similarity=0.166 Sum_probs=79.5 Q ss_pred HHHHHHHHHHCC-------C-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHC-- Q ss_conf 999999997146-------4-6--999999972001898778899999740121010267774014999999997400-- Q gi|254780964|r 129 HTFQYIITSLGL-------D-E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-- 196 (352) Q Consensus 129 ~sYs~il~~l~~-------~-~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l-- 196 (352) .|-+.+..+|-+ . + -++|+++.+.+....+.+.+.. ...+...... +.+..+..+.- T Consensus 728 ~t~~~l~~~L~~w~~~~~~~~~vW~~vY~~y~~~~~~~~~~~~vl~------gL~Y~N~~~~-----l~~~~~~~LYgdn 796 (1192) T TIGR02773 728 PTLSELTSQLKKWKRGYPISDDVWWDVYQWYREEDKWKKKLEYVLS------GLVYDNKTKK-----LQKEKAKKLYGDN 796 (1192) T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH------CCEEECCCCC-----CCHHHHHHCCCCC T ss_conf 6789999999984315676651258778886207822122888860------5222166442-----7978997316744 Q ss_pred -CHHHHHHH-----HHHHH-HHHHCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf -01444114-----78899-899759801289999999856--6666999999999765537542206789999999999 Q gi|254780964|r 197 -EGMWFYTG-----FAQIL-SLGRANKMVGIAEQYQYIMRD--ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 (352) Q Consensus 197 -EGi~Fys~-----Fa~~~-~l~~~g~m~g~~~~i~~I~RD--E~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~e 267 (352) |.|.+++| ++|+| +|+.+|+=-.=.+..++-+=| +-.|.. --.+-..+..|. --|..-.++++..+... T Consensus 797 k~~I~~SVSRlE~Y~~CpF~hfa~yGLkl~ER~~Y~L~apDlG~~fH~~-L~~Is~~l~~e~-Ldw~~L~k~~c~~~~~~ 874 (1192) T TIGR02773 797 KERIQASVSRLEKYNACPFAHFAQYGLKLKERKIYKLEAPDLGQLFHEA-LKEISDELKEEE-LDWSDLTKEQCRALANE 874 (1192) T ss_pred CCEEEEEEECCHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCC-CCCCCCCHHHHHHHHHH T ss_conf 1147234401000017832556502532002552567996367899999-999999996237-87011476899999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9987688688751888479998999999999999999 Q gi|254780964|r 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 (352) Q Consensus 268 ave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL 304 (352) ||+.=.. -....++ ....=-.||.++..+.+ T Consensus 875 ave~l~p----~~q~~IL--~SS~Ry~Y~~~rl~~i~ 905 (1192) T TIGR02773 875 AVEELVP----KIQHEIL--LSSKRYRYVQKRLKRIV 905 (1192) T ss_pred HHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHH T ss_conf 9987634----5347762--23467899999999999 No 56 >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395 These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. . Probab=30.20 E-value=33 Score=13.69 Aligned_cols=55 Identities=16% Similarity=0.413 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCC-CCCCHHHHHHHHHHHHHHHHHHCC----CCCCCCC Q ss_conf 899999999999987688688751-8884-799989999999999999999788----7988999 Q gi|254780964|r 257 FQQKSRTMLHEATLLEIAYAHETM-PKGF-VGLNAPSCEQYMQFIANRRCHQIG----LEPLFKY 315 (352) Q Consensus 257 ~~~~i~~~~~eave~E~~~~~~~~-~~~~-~Gl~~~~~~~yi~y~an~rL~~lG----~~~~f~~ 315 (352) -...+-+|+-..+.. .- |-++ +... +|++-+.+.+||+|+.+|. ..|| |.|+|.+ T Consensus 177 R~~nvdkMilK~vdV-LP--HgLiNsve~k~G~dG~~l~EyvkWl~~R~-~~lgv~~gY~P~fH~ 237 (414) T TIGR01502 177 RERNVDKMILKEVDV-LP--HGLINSVEKKLGLDGEKLLEYVKWLSERI-AKLGVSEGYRPVFHV 237 (414) T ss_pred HHHCHHHHHHHHCCC-CC--CCHHCCHHHHCCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCEEEE T ss_conf 761334422300255-76--40120203222887115577888899988-750678898406887 No 57 >pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA. Probab=29.23 E-value=24 Score=14.60 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=17.6 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 688688751888479998999999999 Q gi|254780964|r 272 EIAYAHETMPKGFVGLNAPSCEQYMQF 298 (352) Q Consensus 272 E~~~~~~~~~~~~~Gl~~~~~~~yi~y 298 (352) ..+|...+..--..|++.+++.+|+.+ T Consensus 2 D~EW~~Li~EA~~~Gis~ee~r~fL~~ 28 (30) T pfam08671 2 DQEWVQLIKEAMEAGLSKEEFREFLEF 28 (30) T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHC T ss_conf 579999999999814679999999850 No 58 >pfam10603 consensus Probab=28.14 E-value=36 Score=13.45 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999876886887518884799989999999999999 Q gi|254780964|r 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 (352) Q Consensus 262 ~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~ 302 (352) +++++.|..+|-+|..+ |..-+.|-|.+++..=|+-+.+. T Consensus 2 kk~yerA~KlEqef~e~-FtaiVqGdt~e~i~~qvK~vI~~ 41 (55) T pfam10603 2 KKTYERALKLEQEFGEY-FTAIVQGDSLEEIYTQIKSVIEE 41 (55) T ss_pred CHHHHHHHHHHHHHHHH-CEEEEECCCHHHHHHHHHHHHHH T ss_conf 06999999999999987-12545089899999999999998 No 59 >TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit; InterPro: IPR011881 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . . Probab=27.83 E-value=36 Score=13.41 Aligned_cols=227 Identities=16% Similarity=0.206 Sum_probs=121.4 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC Q ss_conf 99852026899899999999999998643333455666401330577999999999999997789999999971----46 Q gi|254780964|r 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL----GL 140 (352) Q Consensus 65 ~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l----~~ 140 (352) ..|| |+.+=|..+.+.++..+.+| +||--+=.+=....|..--++.+..-...|+=|-.---...|+| |. T Consensus 13 a~dW-----MP~~YR~tLir~ISqHahSE-ivGmLPEg~Wi~rAPtL~RK~~lmAKvQDE~GHG~yLy~aaEtLlapyG~ 86 (297) T TIGR02156 13 AKDW-----MPEAYRKTLIRQISQHAHSE-IVGMLPEGEWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLLAPYGV 86 (297) T ss_pred CCCC-----CCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 7778-----70889999999864000233-31257787654778517789998756542145268999999987501589 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCCH Q ss_conf 4699999997200189877889999974012101026777401499999999740001444-114788998997598012 Q gi|254780964|r 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF-YTGFAQILSLGRANKMVG 219 (352) Q Consensus 141 ~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~F-ys~Fa~~~~l~~~g~m~g 219 (352) +.+|.....+.= |+.| ...+.-++. +...-+-..= |+=-++|+--+.+ -+| +-+| T Consensus 87 ~Reel~~~Ll~g-----kaKy----ssiFnypTl-tWAD~G~iGW---LVDGAAI~nQ~~L~~~S-YGPY---------- 142 (297) T TIGR02156 87 SREELLDALLTG-----KAKY----SSIFNYPTL-TWADIGVIGW---LVDGAAIINQIPLLRCS-YGPY---------- 142 (297) T ss_pred CHHHHHHHHHCC-----CCCC----CCCCCCCCC-CHHHCCCCCH---HHHHHHHHHHHHHHCCC-CCHH---------- T ss_conf 889999998548-----7651----220147754-5422052000---33567999889873068-9723---------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHC-CC--------------- Q ss_conf 8999999985666669999999997655375422067899999999999987688688-751-88--------------- Q gi|254780964|r 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH-ETM-PK--------------- 282 (352) Q Consensus 220 ~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~-~~~-~~--------------- 282 (352) +..+..||..|+.|.+-|..|+-++.+.- .+.=++|+.+|+.= -=|.. ..| |. T Consensus 143 -~RAm~RiC~EE~FH~~qG~~i~l~~~~~G--------t~~Qr~M~QdAlNR-wWWp~lmmfGP~d~~s~~s~~~ev~~k 212 (297) T TIGR02156 143 -SRAMVRICKEESFHQRQGYEILLTLARHG--------TQEQRQMVQDALNR-WWWPSLMMFGPEDADSPNSGQQEVSTK 212 (297) T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf -58887670211125775799999998617--------88799999988764-317888523888766666404555655 Q ss_pred -CCCCCC-HHHHHHHHHHHHHHHHHHCCCC---C-C-CCCC-C----CCHHH--HHHHHCCCCC Q ss_conf -847999-8999999999999999978879---8-8-9998-8----83257--8997178867 Q gi|254780964|r 283 -GFVGLN-APSCEQYMQFIANRRCHQIGLE---P-L-FKYT-E----NPFPW--MSEVIDLKKE 332 (352) Q Consensus 283 -~~~Gl~-~~~~~~yi~y~an~rL~~lG~~---~-~-f~~~-~----nP~~W--~~~~~~~~~~ 332 (352) +|--.| -+.=..||.-. =.++..||+- | + |+.+ . .+++| |...+.+++. T Consensus 213 wkIk~~sNdelRQ~F~d~~-vp~~~~lGlT~PDp~L~~ne~~g~w~~~~i~W~EF~~vi~g~g~ 275 (297) T TIGR02156 213 WKIKRKSNDELRQKFIDAT-VPQLESLGLTIPDPELKQNEERGHWVYGEIDWDEFKQVIKGNGP 275 (297) T ss_pred HCCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 1442146667889999887-68998747757885345134418613589887899999816899 No 60 >TIGR00601 rad23 UV excision repair protein Rad23; InterPro: IPR004806 All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. Rad23 contains a ubiquitin-like domain that interacts with catalytically active proteasomes and two ubiquitin (Ub)-associated (UBA) sequences that bind Ub. Rad23 interacts with ubiquitinated cellular proteins through the synergistic action of its UBA domains. In humans, Rad23 complexes with the XPC protein.; GO: 0006289 nucleotide-excision repair, 0005634 nucleus. Probab=27.53 E-value=8.2 Score=17.87 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHH----HHHHHHHHCCC----C--C Q ss_conf 01289999999856666699999999976553754220--67899999999999987----68868875188----8--4 Q gi|254780964|r 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT--KEFQQKSRTMLHEATLL----EIAYAHETMPK----G--F 284 (352) Q Consensus 217 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~--~~~~~~i~~~~~eave~----E~~~~~~~~~~----~--~ 284 (352) .|.+-++=+-|.|-= ..-.-|+.+|-+++|.|.. ....|....|+-|.|+. -.+=...+.+. + . T Consensus 309 ~PqFq~lRq~vq~NP----~~L~~lL~~iG~~nPQL~~~I~~h~E~F~qlL~Epv~~nmqDv~~~~~d~~~gGGG~~~~~ 384 (453) T TIGR00601 309 QPQFQQLRQVVQQNP----QLLPPLLQQIGQENPQLLQQISQHPEEFLQLLNEPVEENMQDVLEGESDMVGGGGGEDIEV 384 (453) T ss_pred CHHHHHHHHHHHCCH----HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 365676727761266----7899999973453737999965260678887504731358987324677767875567764 Q ss_pred CC-CCHHHHHH-------HHHHHHH-----HHHHHCCCCCCC Q ss_conf 79-99899999-------9999999-----999978879889 Q gi|254780964|r 285 VG-LNAPSCEQ-------YMQFIAN-----RRCHQIGLEPLF 313 (352) Q Consensus 285 ~G-l~~~~~~~-------yi~y~an-----~rL~~lG~~~~f 313 (352) .| +....+=+ ||.+... .||..|||+.-- T Consensus 385 ~G~iae~g~gq~~GeGsf~I~vTp~e~EAIeRL~~LGF~r~L 426 (453) T TIGR00601 385 TGEIAEAGVGQMNGEGSFQIQVTPEEKEAIERLCALGFDRGL 426 (453) T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCC T ss_conf 355524467865665211676341257789999971798675 No 61 >pfam08899 DUF1844 Domain of unknown function (DUF1844). This family of proteins are functionally uncharacterized. Probab=26.61 E-value=38 Score=13.27 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=6.1 Q ss_pred CCCCCHHHHHHHHHHH Q ss_conf 2689989999999999 Q gi|254780964|r 71 KNGLTDDERLMIKRNL 86 (352) Q Consensus 71 ~~~Lt~~Ek~~~~~~l 86 (352) +++|+++|+.++..++ T Consensus 52 kGNLt~~E~~lL~~~l 67 (74) T pfam08899 52 KGNLTADEARLLENLL 67 (74) T ss_pred CCCCCHHHHHHHHHHH T ss_conf 3699999999999999 No 62 >pfam06556 ASFV_p27 IAP-like protein p27 C-terminus. This family represents the C-terminal region of the African swine fever virus IAP-like protein p27. This family is found in conjunction with pfam00653. It has been suggested that the family may be a host range gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros. Probab=24.87 E-value=32 Score=13.79 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=4.1 Q ss_pred HHHHHHHHHH Q ss_conf 9999985666 Q gi|254780964|r 223 QYQYIMRDES 232 (352) Q Consensus 223 ~i~~I~RDE~ 232 (352) +|+-|.+||+ T Consensus 100 giepikkden 109 (131) T pfam06556 100 GIEPIKKDEN 109 (131) T ss_pred CCCCCCCCCC T ss_conf 7510234411 No 63 >KOG0011 consensus Probab=24.36 E-value=35 Score=13.54 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=48.2 Q ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCC Q ss_conf 801289999999856-666699999999976553754220--678999999999999876886887518884----7999 Q gi|254780964|r 216 KMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKGF----VGLN 288 (352) Q Consensus 216 ~m~g~~~~i~~I~RD-E~lH~~f~~~l~~~l~~E~p~l~~--~~~~~~i~~~~~eave~E~~~~~~~~~~~~----~Gl~ 288 (352) -.+.+.++-+.|... +.+| .+++++-+++|.+.. .+.++....|+-+.++-+..=.....+.+. +.+| T Consensus 221 ~~~qf~~lR~~iqqNP~ll~-----~~Lqqlg~~nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vt 295 (340) T KOG0011 221 NQPQFQQLRQMIQQNPELLH-----PLLQQLGKQNPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVT 295 (340) T ss_pred CCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC T ss_conf 66999999999863989999-----9999984138799999997899999986054556655444653103875437607 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 899999999999999997887988 Q gi|254780964|r 289 APSCEQYMQFIANRRCHQIGLEPL 312 (352) Q Consensus 289 ~~~~~~yi~y~an~rL~~lG~~~~ 312 (352) .++ --|=.||..|||+.- T Consensus 296 pee------~eAIeRL~alGF~ra 313 (340) T KOG0011 296 PEE------KEAIERLEALGFPRA 313 (340) T ss_pred HHH------HHHHHHHHHHCCCHH T ss_conf 878------999999997087477 No 64 >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Probab=24.19 E-value=42 Score=12.97 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH Q ss_conf 89999999999998768868875188847-999899999999 Q gi|254780964|r 257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQ 297 (352) Q Consensus 257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~-Gl~~~~~~~yi~ 297 (352) ....++.+.++.++--+.+++.++|.|-. ....+.+.+.|+ T Consensus 155 ~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~~~~~i~~~i~ 196 (198) T cd02023 155 YLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK 196 (198) T ss_pred HHHHHHHHHHHHCCCCHHCCCEEECCCCCCCHHHHHHHHHHH T ss_conf 998607879986524151473897899986219999999984 No 65 >pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide. Probab=22.22 E-value=46 Score=12.72 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998643333455666401330577999999999999997789 Q gi|254780964|r 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 (352) Q Consensus 81 ~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~ 129 (352) .+.+-+-|++-.+ + ..|+=.-+.|++|+-...-+-+=-+--| T Consensus 78 A~~kYidfv~~i~----d---~PfliDSt~~~ar~aa~kya~E~GladR 119 (296) T pfam02007 78 AIIRYIDFVADVT----D---APFLIDSTEGEVRLAAAKYATEVGLADR 119 (296) T ss_pred HHHHHHHHHHCCC----C---CCEEECCCCHHHHHHHHHHHHHHCHHHH T ss_conf 9999888763257----7---8756438867888999866555144677 No 66 >TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process. Probab=20.56 E-value=18 Score=15.50 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=40.0 Q ss_pred HHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHH---HHHHHHCCCCCCCCC Q ss_conf 87688688751888-47999899999999999---999997887988999 Q gi|254780964|r 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA---NRRCHQIGLEPLFKY 315 (352) Q Consensus 270 e~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~a---n~rL~~lG~~~~f~~ 315 (352) ++..+.++.+++.+ ++|+|...+.+--+..+ +....=+|+.|+|+- T Consensus 92 D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT 141 (210) T TIGR00693 92 DLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGPIFPT 141 (210) T ss_pred CCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 89989999853899579853379899999998764078988886371158 No 67 >pfam05756 S-antigen S-antigen protein. S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria. Probab=20.03 E-value=51 Score=12.42 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 144411478899899759801289999999 Q gi|254780964|r 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 (352) Q Consensus 198 Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I 227 (352) .|.||.-|.++|-+...|+.+++-+-+.-| T Consensus 6 SVsfyLFFiYLYIYkTYGKVKNTD~elSnI 35 (310) T pfam05756 6 SVTFYLFFIYLYIYKTYGKVKNTDKELSNI 35 (310) T ss_pred EEHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 315789999999987524323640666543 Done!