HHSEARCH alignment of GI: 254780964 and SCOP domain: d1jk0a_

Alignment
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=100.00  E-value=0  Score=543.03  Aligned_cols=283  Identities=31%  Similarity=0.561  Sum_probs=263.2

Q ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780964|r   19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN   98 (352)
Q Consensus        19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~   98 (352)
                      ..+++|+.++++|++++||||||+|++|++++++||+|+||||++|+.||++  +||+.||++++++|++|+++|++|++
T Consensus        48 ~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~--~Lt~~Er~~i~~il~ffa~~D~~v~~  125 (334)
T d1jk0a_          48 EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNE  125 (334)
T ss_dssp             GGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred             HCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2389666799885467487677999999999876999102468688899866--59999999999999998766479874


Q ss_pred             HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             5666401330577999999999999997789999999971464699---9999972001898778899999740121010
Q gi|254780964|r   99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT  175 (352)
Q Consensus        99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~  175 (352)
                      ++...+++.++.||+++++++|+++|+||++|||++++++++++.+   +|+++.+.|.+++|++|+.+++..       
T Consensus       126 ~l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~~-------  198 (334)
T d1jk0a_         126 NLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD-------  198 (334)
T ss_dssp             HHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------
T ss_conf             7887565784518899999999999999999999999975144567999999998777899988999876114-------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             26777401499999999740001444114788998997598012899999998566666999999999765537542206
Q gi|254780964|r  176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK  255 (352)
Q Consensus       176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~  255 (352)
                           .+..+.+++++ ++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.|     
T Consensus       199 -----~~~~~~~~lva-~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~-----  267 (334)
T d1jk0a_         199 -----ADALFGERLVA-FASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD-----  267 (334)
T ss_dssp             -----SSCCHHHHHHH-HHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-----
T ss_pred             -----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----
T ss_conf             -----55799999999-9997677661038999998634851658899999999999999999999998512304-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf             789999999999998768868875188847999899999999999999997887988999888325789
Q gi|254780964|r  256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS  324 (352)
Q Consensus       256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~  324 (352)
                        .+++++++++||++|.+|+++++|.+++|||++++++||+|+||+||.+||++|+|++ +||+|||+
T Consensus       268 --~~~i~~i~~eAvelE~~~~~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~-~NP~~wme  333 (334)
T d1jk0a_         268 --PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-ENPFDFME  333 (334)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCC-CCCCGGGG
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC
T ss_conf             --8999999999999999999985789868989999999999999999997799988999-99988646


SCOP domain information

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]