Query gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 352 No_of_seqs 132 out of 1350 Neff 7.5 Searched_HMMs 13730 Date Wed Jun 1 10:57:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780964.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1syya_ a.25.1.2 (A:) Ribonucl 100.0 0 0 586.5 34.2 315 7-323 2-317 (317) 2 d1mxra_ a.25.1.2 (A:) Ribonucl 100.0 0 0 548.5 31.8 315 9-327 3-339 (339) 3 d1jk0a_ a.25.1.2 (A:) Ribonucl 100.0 0 0 543.0 29.7 283 19-324 48-333 (334) 4 d1w68a_ a.25.1.2 (A:) Ribonucl 100.0 0 0 502.5 30.1 278 19-320 1-281 (281) 5 d1jk0b_ a.25.1.2 (B:) Ribonucl 100.0 0 0 505.4 17.7 272 19-313 12-285 (285) 6 d1r2fa_ a.25.1.2 (A:) Ribonucl 100.0 0 0 472.1 32.2 273 33-326 5-280 (283) 7 d3dhza1 a.25.1.2 (A:14-297) Ri 100.0 0 0 471.2 32.3 276 31-327 5-283 (284) 8 d2inca1 a.25.1.2 (A:2-492) Tol 99.0 4.8E-07 3.5E-11 64.4 21.7 222 72-312 82-313 (491) 9 d1mtyd_ a.25.1.2 (D:) Methane 98.7 7.9E-06 5.8E-10 56.0 19.6 219 72-312 79-315 (512) 10 d2oc5a1 a.25.1.6 (A:20-241) Hy 98.0 0.00055 4E-08 43.4 21.9 202 74-310 7-210 (222) 11 d1mtyb_ a.25.1.2 (B:) Methane 97.8 0.0015 1.1E-07 40.5 20.2 218 73-307 130-362 (384) 12 d1mhyb_ a.25.1.2 (B:) Methane 97.8 0.0015 1.1E-07 40.3 18.8 230 61-310 119-369 (383) 13 d1za0a1 a.25.1.2 (A:8-274) Pos 97.5 0.0035 2.6E-07 37.9 13.6 177 40-250 9-201 (267) 14 d2incb1 a.25.1.2 (B:8-329) Tol 97.5 0.004 2.9E-07 37.5 22.1 210 72-308 104-322 (322) 15 d1afra_ a.25.1.2 (A:) delta 9- 96.9 0.014 9.9E-07 33.8 12.0 187 40-252 27-232 (345) 16 d2fzfa1 a.25.1.1 (A:10-167) Hy 94.6 0.13 9.6E-06 27.1 10.4 138 85-247 15-154 (158) 17 d1rcwa_ a.132.1.4 (A:) Hypothe 88.0 0.7 5.1E-05 22.1 20.3 188 59-279 18-212 (213) 18 d1jkva_ a.25.1.3 (A:) Manganes 82.4 1.2 9.1E-05 20.4 5.5 158 83-249 23-196 (266) 19 d1udda_ a.132.1.3 (A:) Hypothe 81.2 1.4 1E-04 20.1 17.6 189 59-283 23-215 (215) 20 d2cwla1 a.25.1.3 (A:1-299) Man 79.7 1.5 0.00011 19.7 5.5 130 110-247 56-201 (299) 21 d1otka_ a.25.1.2 (A:) Phenylac 74.8 2.1 0.00015 18.8 18.5 188 89-310 12-210 (244) 22 d1vjxa_ a.25.1.1 (A:) Hypothet 72.6 2.3 0.00017 18.5 9.3 136 86-243 11-146 (149) 23 d1j30a_ a.25.1.1 (A:) Hypothet 60.9 3.9 0.00029 16.9 15.2 107 106-246 33-139 (141) 24 d1zpya1 a.25.1.5 (A:4-94) Hypo 58.7 4.3 0.00031 16.7 9.3 65 73-140 9-73 (91) 25 d1nnqa1 a.25.1.1 (A:2-134) Rub 53.5 5.2 0.00038 16.1 13.0 108 95-247 21-129 (133) 26 d1lkoa1 a.25.1.1 (A:2-147) Rub 51.6 5.5 0.0004 15.9 12.7 112 104-247 32-143 (146) 27 d1z72a1 a.132.1.3 (A:4-220) Pu 49.3 6 0.00043 15.7 17.0 183 58-278 27-215 (217) 28 d1rcda_ a.25.1.1 (A:) (Apo)fer 41.6 7.8 0.00057 14.9 7.2 26 110-135 8-33 (171) 29 d1otva_ a.132.1.4 (A:) Coenzym 37.5 9 0.00065 14.5 14.5 177 67-278 31-223 (254) 30 d2oh3a1 a.25.1.8 (A:3-154) Unc 27.5 13 0.00094 13.4 10.6 118 106-247 29-148 (152) 31 d1z6oa1 a.25.1.1 (A:13-212) (A 25.9 14 0.001 13.2 5.0 19 217-235 57-75 (200) 32 d1bg7a_ a.25.1.1 (A:) (Apo)fer 23.9 15 0.0011 12.9 7.3 64 216-279 43-110 (173) 33 d1lb3a_ a.25.1.1 (A:) (Apo)fer 22.2 16 0.0012 12.7 7.3 24 217-240 43-66 (179) 34 d1cqxa1 a.1.1.2 (A:1-150) Flav 21.6 17 0.0012 12.6 2.3 42 74-117 2-43 (150) 35 d3sdha_ a.1.1.2 (A:) Hemoglobi 21.2 17 0.0012 12.6 2.6 20 72-91 7-26 (145) No 1 >d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Probab=100.00 E-value=0 Score=586.46 Aligned_cols=315 Identities=54% Similarity=1.009 Sum_probs=302.8 Q ss_pred CCHHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 41000654578813374868899-80001786167999999999945798703674798998520268998999999999 Q gi|254780964|r 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 (352) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~ 85 (352) .+.+++|.++++..+|||++|++ |+++++|+||||+|++|++++++||+|+|||+++|++||++ ++|++.||++++++ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~kYp~~~~~yk~~~~~fW~peEi~ls~D~~dw~~-~kL~~~e~~~~~~~ 80 (317) T d1syya_ 2 ADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLN 80 (317) T ss_dssp CSSGGGGGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHH T ss_pred CCHHHCCCCCCCCCCCEEECCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-CCCCHHHHHHHHHH T ss_conf 21321534456711140268998765551898777999999999976999510574013888865-88998999999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998643333455666401330577999999999999997789999999971464699999997200189877889999 Q gi|254780964|r 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 (352) Q Consensus 86 l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~ 165 (352) |++|+.+|++|++++...+++.++.||+++++++|+++|+||++|||+++++++.|++|+|+++.++|.+++|++++.++ T Consensus 81 l~~~~~~d~~v~~~~~~~l~~~i~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~e~~~~~~~~~~i~~k~~~~~~~ 160 (317) T d1syya_ 81 LGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEI 160 (317) T ss_dssp HHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998886687540576401237859999999999999878999999999985677899999984299999999999997 Q ss_pred HHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97401210102677740149999999974000144411478899899759801289999999856666699999999976 Q gi|254780964|r 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 (352) Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l 245 (352) +....+........+..+.++.+++++++++||++|||||+++++|+++|+|+|+|++|++|+|||++|+.|++.+++++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEgi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l 240 (317) T d1syya_ 161 TGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGI 240 (317) T ss_dssp TSGGGSTTCCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75311434344644339999999999999999999977999999987335421089998999811887866999999998 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 553754220678999999999999876886887518884799989999999999999999788798899988832578 Q gi|254780964|r 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 (352) Q Consensus 246 ~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~ 323 (352) ++|+|++++++..+++++++++||++|++|++++++.|++|||++++++||+|+||+||.+||++|+|++ +||+||| T Consensus 241 ~~e~~e~~~~~~~~~i~el~~eav~~E~~~~~~~~~~~~~Gl~~~~l~~Yv~y~an~~L~~LG~~~~f~~-~NP~~wm 317 (317) T d1syya_ 241 KEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHT-KNPFPWM 317 (317) T ss_dssp HHHCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCC-CCSCTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCC T ss_conf 5505999863359999999999999999999998379878999999999999999999997799999989-9998979 No 2 >d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=548.47 Aligned_cols=315 Identities=23% Similarity=0.311 Sum_probs=280.8 Q ss_pred HHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 000654578813374868899-8000178616799999999994579870367479899852026899899999999999 Q gi|254780964|r 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 (352) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~ 87 (352) -++|+++ .+.-+++|+.|++ ++.++.|+||||+|++|++++++||+|+||||++|+.||++ ||++||++++++|+ T Consensus 3 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ky~~~~~ly~~~~~~fW~p~Ei~ls~D~~dw~~---L~~~Ek~~~~~~l~ 78 (339) T d1mxra_ 3 TTFSQTK-NDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLK 78 (339) T ss_dssp CSSCCSC-CCTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHT---SCHHHHHHHHHHHH T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHH T ss_conf 6578999-8500056205998774327755667999999999867999623062200899987---89999999999999 Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99864333345566640133057799999999999999778999999997146469999999720018987788999997 Q gi|254780964|r 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 (352) Q Consensus 88 ~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~ 167 (352) +|+++|++|++++...+++.++.||+++++++|+++|+||++|||+++++++.+++++|+++.++|.+++|..++.++++ T Consensus 79 ~f~~~D~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~~~~~~~~~~~~~~~k~~~~~~~~~ 158 (339) T d1mxra_ 79 YQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYD 158 (339) T ss_dssp HHHHHHHHHHHHHHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHCHHHHHHHTTHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_conf 99985587852509999875388999999999999999999999999999815648899999856777778999999988 Q ss_pred HHCCCHHH----------------CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 40121010----------------26777401499999999740001444114788998997598012899999998566 Q gi|254780964|r 168 TLSSPSFT----------------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 (352) Q Consensus 168 ~~~~~~~~----------------~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE 231 (352) .+...... .......+..+.+.+++++++|||+|||||+++++|+++|+|||+|++|+||+||| T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lEGi~f~ssF~~~~~l~~~g~m~g~~~~i~~I~RDE 238 (339) T d1mxra_ 159 ELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDE 238 (339) T ss_dssp HHHHHHHHHHHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 88766788886155641345653221115789999999999999999999974899999873340001899999997323 Q ss_pred HHHHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66699999999976553754----22067899999999999987688688751888-47999899999999999999997 Q gi|254780964|r 232 SLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQ 306 (352) Q Consensus 232 ~lH~~f~~~l~~~l~~E~p~----l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~ 306 (352) ++|+.|+++++++++++.+. .+++++.+++++++++||++|.+|+++++++| ++|||++++++||+|+||+||.+ T Consensus 239 ~lH~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~i~~~~~eave~E~~~~~~~~~~~~l~Gl~~~~~~~yi~y~an~~L~~ 318 (339) T d1mxra_ 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQA 318 (339) T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 77779999999999853771667776789999999999999999999999970479818999999999999999999997 Q ss_pred CCCCCCCCCCCCCHHHHHHHH Q ss_conf 887988999888325789971 Q gi|254780964|r 307 IGLEPLFKYTENPFPWMSEVI 327 (352) Q Consensus 307 lG~~~~f~~~~nP~~W~~~~~ 327 (352) ||++|+|++..||+|||+.++ T Consensus 319 lG~~~~f~~~~NP~~w~~~~l 339 (339) T d1mxra_ 319 VGLDLPFQTRSNPIPWINTWL 339 (339) T ss_dssp TTCCCCSCCCCCSCGGGGGTC T ss_pred CCCCCCCCCCCCCHHHHHHHC T ss_conf 889999999999868898639 No 3 >d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Probab=100.00 E-value=0 Score=543.03 Aligned_cols=283 Identities=31% Similarity=0.561 Sum_probs=263.2 Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345 Q gi|254780964|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352) Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352) ..+++|+.++++|++++||||||+|++|++++++||+|+||||++|+.||++ +||+.||++++++|++|+++|++|++ T Consensus 48 ~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~--~Lt~~Er~~i~~il~ffa~~D~~v~~ 125 (334) T d1jk0a_ 48 EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNN--RMNENERFFISRVLAFFAASDGIVNE 125 (334) T ss_dssp GGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHH--TCCHHHHHHHHHHHHHHHTTSSHHHH T ss_pred HCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2389666799885467487677999999999876999102468688899866--59999999999999998766479874 Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 5666401330577999999999999997789999999971464699---9999972001898778899999740121010 Q gi|254780964|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175 (352) Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~ 175 (352) ++...+++.++.||+++++++|+++|+||++|||++++++++++.+ +|+++.+.|.+++|++|+.+++.. T Consensus 126 ~l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~~------- 198 (334) T d1jk0a_ 126 NLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD------- 198 (334) T ss_dssp HHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS------- T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------- T ss_conf 7887565784518899999999999999999999999975144567999999998777899988999876114------- Q ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 26777401499999999740001444114788998997598012899999998566666999999999765537542206 Q gi|254780964|r 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 (352) Q Consensus 176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~ 255 (352) .+..+.+++++ ++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.| T Consensus 199 -----~~~~~~~~lva-~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~----- 267 (334) T d1jk0a_ 199 -----ADALFGERLVA-FASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPD----- 267 (334) T ss_dssp -----SSCCHHHHHHH-HHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC----- T ss_pred -----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----- T ss_conf -----55799999999-9997677661038999998634851658899999999999999999999998512304----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH Q ss_conf 789999999999998768868875188847999899999999999999997887988999888325789 Q gi|254780964|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 (352) Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~ 324 (352) .+++++++++||++|.+|+++++|.+++|||++++++||+|+||+||.+||++|+|++ +||+|||+ T Consensus 268 --~~~i~~i~~eAvelE~~~~~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~-~NP~~wme 333 (334) T d1jk0a_ 268 --PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-ENPFDFME 333 (334) T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCC-CCCCGGGG T ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC T ss_conf --8999999999999999999985789868989999999999999999997799988999-99988646 No 4 >d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=100.00 E-value=0 Score=502.54 Aligned_cols=278 Identities=29% Similarity=0.553 Sum_probs=255.3 Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345 Q gi|254780964|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352) Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352) +.+++|++++++|++++|+||||+|++|++++++||+|+||||++|++||++ ||++||++++++|++|+++|++|++ T Consensus 1 ~~~e~~l~~~~~r~~~~PikY~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~---L~~~Er~~~~~~l~~~~~~D~~v~~ 77 (281) T d1w68a_ 1 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASDGIVNE 77 (281) T ss_dssp CTTCTTTSCCGGGGCCCSCSCHHHHHHHHHHHHTCCCGGGSCCGGGHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9988677789996455077677999999999876998131460611999985---9999999999999999835667764 Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 5666401330577999999999999997789999999971464699---9999972001898778899999740121010 Q gi|254780964|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175 (352) Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~ 175 (352) ++...+.+.++.||+++++++|+++|+||++|||+++++++.++.+ .++++.+.+.+.+|..++..+... T Consensus 78 ~~~~~~~~~~~~~e~~~~~~~~~~~E~iH~~sYs~il~t~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 150 (281) T d1w68a_ 78 NLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGD------- 150 (281) T ss_dssp HHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTGGGTCHHHHHHHHHHHHHHHC------- T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------- T ss_conf 3565332660669999999999999988788999999986033245788899999659999999999865102------- Q ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 26777401499999999740001444114788998997598012899999998566666999999999765537542206 Q gi|254780964|r 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 (352) Q Consensus 176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~ 255 (352) ....+..+ +++++++||++|||||+++++|+++|+|+|+|++|++|+|||++|+.|++.++++++.|.| T Consensus 151 -----~~~~~~~~-~v~~~~~Egi~f~s~F~~~~~~~~~g~m~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~e~~----- 219 (281) T d1w68a_ 151 -----KEATYGER-VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPA----- 219 (281) T ss_dssp -----SSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC----- T ss_pred -----CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----- T ss_conf -----21059999-9999999999999879999999862976147899999987678888899999875012203----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH Q ss_conf 78999999999999876886887518884799989999999999999999788798899988832 Q gi|254780964|r 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 (352) Q Consensus 256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~ 320 (352) .+++++++++||++|.+|++++++.+++|||.+++++||+|+||+||++||++|+|++ +||+ T Consensus 220 --~~~v~~~~~~av~lE~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~-~NPf 281 (281) T d1w68a_ 220 --EQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRV-ENPF 281 (281) T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHHHTSCCSSCC-CCCC T ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCC T ss_conf --8999999999999999999985778868989999999999999999997789998999-9958 No 5 >d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Probab=100.00 E-value=0 Score=505.43 Aligned_cols=272 Identities=22% Similarity=0.376 Sum_probs=252.1 Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345 Q gi|254780964|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352) Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352) ..+++++.++++|++++|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|++|+++|++|++ T Consensus 12 ~~~e~~l~e~~~r~~l~Piky~~~~~~y~~~~~~fW~peEi~l~~D~~d~~~---Lt~~Ek~~~~~~l~~f~~~D~~v~~ 88 (285) T d1jk0b_ 12 EKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNK 88 (285) T ss_dssp TTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC-------- T ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1278766789986356687687999999999976998300370621898986---9999999999999999998633654 Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC Q ss_conf 566640133057799999999999999778999999997146469--999999720018987788999997401210102 Q gi|254780964|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 (352) Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~ 176 (352) ++...+++.++.||+++++++|+++|+||++|||+++++++++++ ++|+++.+.|.+++|++|+.++++. T Consensus 89 ~~~~~i~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~~l~~~~e~~~~f~~~~~~~~~~~k~~~~~~~~~~-------- 160 (285) T d1jk0b_ 89 YLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISN-------- 160 (285) T ss_dssp -CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTSCSGGGGCSCHHHHHHHHHHHHTTSS-------- T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC-------- T ss_conf 327666564044799999999999997999999999999656758889999886258899776666631143-------- Q ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH Q ss_conf 67774014999999997400014441147889989975980128999999985666669999999997655375422067 Q gi|254780964|r 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 (352) Q Consensus 177 ~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~ 256 (352) ....+..+++ +++++||++|||||+++++|+++|+|+|+++++++|+|||++|+.|++.+++++..+.| T Consensus 161 ----~~~~~~~~~i-~~~~~Egi~f~s~Fa~~~~l~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~------ 229 (285) T d1jk0b_ 161 ----DDSLYAERLV-AFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN------ 229 (285) T ss_dssp ----SSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC------ T ss_pred ----CHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ T ss_conf ----3167999999-99988888724505899986320014159999999999999999899899998752454------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 899999999999987688688751888479998999999999999999978879889 Q gi|254780964|r 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 (352) Q Consensus 257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f 313 (352) .+++.+++++||++|++|++++++.+++|||++++++||+|+||+||.+||++|+| T Consensus 230 -~~~i~~l~~eAv~lE~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~lG~~~~y 285 (285) T d1jk0b_ 230 -PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285 (285) T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf -99999999999999999999974787689799999999999999999987699999 No 6 >d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Probab=100.00 E-value=0 Score=472.10 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=246.9 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH Q ss_conf 01786167999999999945798703674798998520268998999999999999986433334556664013305779 Q gi|254780964|r 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 (352) Q Consensus 33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E 112 (352) +++-++|+|++++|+|++++||+|+||||++|++||++ ||+.||++++++|++|+++|++|++++...+++.++.|| T Consensus 5 nwn~~~d~~~~~~y~k~~~~fW~peEi~l~~D~~dw~~---Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~~E 81 (283) T d1r2fa_ 5 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPH 81 (283) T ss_dssp CTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCSSHH T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH T ss_conf 67888858899999999967999735282744998852---999999999999999999999997533441323015689 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH Q ss_conf 999999999999977899999999714646--999999972001898778899999740121010267774014999999 Q gi|254780964|r 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 (352) Q Consensus 113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 190 (352) +++++++|+++|+||+++||+++++++.++ .++|+++.+.|.+++|++|+.+++.. ++.+. ++ T Consensus 82 ~~~~~~~q~~~E~iH~~~Ys~il~~l~~~~e~~~~~~~~~~~~~l~~k~~~~~~~~~~-------------~~~l~-~~- 146 (283) T d1r2fa_ 82 EEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVS-------------DEPLK-KK- 146 (283) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHS-------------SCHHH-HH- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CHHHH-HH- T ss_conf 9999999999998889999999998742444789999986168999988999888501-------------20899-99- Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99740001444114788998997598012899999998566666999999999765537542206789999999999998 Q gi|254780964|r 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 (352) Q Consensus 191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave 270 (352) ++++++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.++++++.|.|+.++++++++++++++++|+ T Consensus 147 i~~~~lEGi~F~s~F~~~~~~~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~~~~~~v~~~~~e~v~ 226 (283) T d1r2fa_ 147 IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 226 (283) T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999866999999987575034999999999988753568999999998733588886689999999999999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHH Q ss_conf 76886887518884799989999999999999999788798899988-832578997 Q gi|254780964|r 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326 (352) Q Consensus 271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~-nP~~W~~~~ 326 (352) +|++|++++++++.. .+++++||+|+||+||++||++|+|++.. ++-||+-.. T Consensus 227 ~E~~~~~~~~~~~~~---~~~~~~yiky~an~~L~~lG~~~~f~~~~~~~NP~~~~~ 280 (283) T d1r2fa_ 227 NEIRYTEALYAETGW---VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAA 280 (283) T ss_dssp HHHHHHHHHTTTTSC---HHHHHHHHHHHHHHHHHHTTCCCCSCTTTSCCCHHHHHH T ss_pred HHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC T ss_conf 999999997116787---999999999999999997889989998778999135415 No 7 >d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Probab=100.00 E-value=0 Score=471.24 Aligned_cols=276 Identities=20% Similarity=0.303 Sum_probs=251.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC Q ss_conf 00017861679999999999457987036747989985202689989999999999999864333345566640133057 Q gi|254780964|r 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 (352) Q Consensus 31 ~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~ 110 (352) ..+++.++|+|++++|+|++++||+|+||||++|++||++ ||++||++++++|++|+++|++|++++...+++.++. T Consensus 5 ~~nwn~~~~~~~~~~y~k~~~~fW~peEi~l~~D~~d~~~---Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~~~~~~~~ 81 (284) T d3dhza1 5 AINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAET 81 (284) T ss_dssp CCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSS T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 7688888868899999999967999634084732999987---9999999999999999999999981472210244477 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHH Q ss_conf 799999999999999778999999997146469--999999720018987788999997401210102677740149999 Q gi|254780964|r 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 (352) Q Consensus 111 ~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (352) ||+++++++|+++|+||+++||+++++++.+++ ++|+++.++|.+++|++|+.++++. +. .+.+ T Consensus 82 ~E~~~~~~~q~~~E~iH~~sYs~i~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~~-------------~~-~~~~ 147 (284) T d3dhza1 82 MHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNG-------------DD-PLKK 147 (284) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS-------------SC-HHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-HHHH T ss_conf 899999999999998889999999987236757899999998778888777899998633-------------68-9999 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 99997400014441147889989975980128999999985666669999999997655375422067899999999999 Q gi|254780964|r 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 (352) Q Consensus 189 ~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~ea 268 (352) . ++++++||++|||||+++++|+++|+|+|+|+++++|+|||++|+.|++.+++++++|.|+.+++++++++++++.+| T Consensus 148 ~-va~~~~EGi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~e~~~~~~~e~~~~i~~~~~~a 226 (284) T d3dhza1 148 K-VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDL 226 (284) T ss_dssp H-HHHHHHHHTTTHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH T ss_pred H-HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 9-999999999990709999998762115569999999998777777899999987504132555677799999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH Q ss_conf 98768868875188847999899999999999999997887988999888-325789971 Q gi|254780964|r 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-PFPWMSEVI 327 (352) Q Consensus 269 ve~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~n-P~~W~~~~~ 327 (352) |++|++|++++|+. +|++ +++++||+|+||+||.+||++|+|+.++. .-||+...+ T Consensus 227 ve~E~~~~~~~~~~--~gl~-~~~~~yiky~an~~L~~lG~~~~f~~~~~~~nP~~~~~~ 283 (284) T d3dhza1 227 YENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSL 283 (284) T ss_dssp HHHHHHHHHHHHTT--TTCH-HHHHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHH T ss_pred HHHHHHHHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC T ss_conf 99999999998742--5749-999999999999999978899999985577887888224 No 8 >d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Probab=98.97 E-value=4.8e-07 Score=64.38 Aligned_cols=222 Identities=13% Similarity=0.051 Sum_probs=139.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-- Q ss_conf 689989999999999999864333345566640133057799999999999999778999999997146469999999-- Q gi|254780964|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY-- 149 (352) Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~-- 149 (352) +.+++.-++.++..|+.+..++-....+. ..+.+..+.++++.+.+.|+..|..|++...++...++.+... |+.. T Consensus 82 ~~~dprw~~~Lk~~Ls~i~~~Ey~A~~~~-A~l~r~ap~~~~r~aaa~Q~lDElRHaQ~~~~l~~~~~~~~~~-~d~~~k 159 (491) T d2inca1 82 DRADPGWVSTMQLHFGAIALEEYAASTAE-ARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-WDWAHK 159 (491) T ss_dssp GTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGG-GGHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHH T ss_conf 11798999999999851437999999999-9999877887799999999889999999999998764025774-407899 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf ---72001898778899999740121010267774014999999997400014441147889989975980128999999 Q gi|254780964|r 150 ---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 (352) Q Consensus 150 ---~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~ 226 (352) .++|..+. ..+..+.+. ....-.+..++-++++|.++=-..|..+-..+..+.=+-+.+++.. T Consensus 160 ~~~~~~~~~~~----~R~~~Ed~l----------~~~dw~e~~val~~v~E~~~tnL~~v~f~~~Aa~ngD~l~~tv~~s 225 (491) T d2inca1 160 AIHTNEWAAIA----ARSFFDDMM----------MTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISS 225 (491) T ss_dssp GGGSCCHHHHH----HHHHHHHHT----------TSSCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHH T ss_pred HHCCCCCCCHH----HHHHHHHHH----------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 72666743078----999999886----------1288899998888768885327889889999986117669999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCCCH-HHHHHHHHHHHH Q ss_conf 985666669999999997655375422067899999999999987688----688751888479998-999999999999 Q gi|254780964|r 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA----YAHETMPKGFVGLNA-PSCEQYMQFIAN 301 (352) Q Consensus 227 I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~----~~~~~~~~~~~Gl~~-~~~~~yi~y~an 301 (352) |.+||++|+.+|..+++.+.++.+ .+..++.|...+-....+=.. ..+|-.+...=..+- +.+.+.+-=--= T Consensus 226 iqsDEaRH~~~~~~~l~~l~e~~~---~~~~Q~~vd~~fWr~~r~~~~l~G~~mdY~~p~~~r~~s~ke~~~ew~~~~~~ 302 (491) T d2inca1 226 IQTDESRHAQQGGPSLKILVENGK---KDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFE 302 (491) T ss_dssp HHHHHHHHHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 545877663234999999996766---79999999999876648899887777765052522788999999999889999 Q ss_pred HHHHHCCCCCC Q ss_conf 99997887988 Q gi|254780964|r 302 RRCHQIGLEPL 312 (352) Q Consensus 302 ~rL~~lG~~~~ 312 (352) ++|..+|+++. T Consensus 303 ~~L~~yGl~~P 313 (491) T d2inca1 303 RQLLDLGLDKP 313 (491) T ss_dssp HHHHHHTCCCC T ss_pred HHHHHHCCCCC T ss_conf 99999489987 No 9 >d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Probab=98.67 E-value=7.9e-06 Score=56.00 Aligned_cols=219 Identities=13% Similarity=0.064 Sum_probs=122.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHH---HH Q ss_conf 6899899999999999998643333455666401330577999999999999997789999999971---46469---99 Q gi|254780964|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEG---EL 145 (352) Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l---~~~~~---e~ 145 (352) .++++.-.+.++..|+.+..++-...... ..+.+..+.++++.+.++|++.|++|++..++...-+ +.++. .. T Consensus 79 ~~~d~~wl~~lk~~ls~~~hgE~gA~l~~-A~l~r~apt~~ak~~aa~Qt~DE~RH~q~~a~~~~~l~~~~~d~~~~~~~ 157 (512) T d1mtyd_ 79 VRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA 157 (512) T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 02797899999998545477999999999-99987577588999999987689999999999999998647985202244 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9999720018987788999997401210102677740149999999974000144---4114788998997598012899 Q gi|254780964|r 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAE 222 (352) Q Consensus 146 f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~ 222 (352) ......+|.-+.- .+..+++- ....-.+..+..++++|.++ ++++| ...+..+-=+-+.+ T Consensus 158 r~~~~~~Pi~q~~----r~lfed~l----------~~~Dw~e~~ial~~v~E~~ftnL~fv~f---~~~Aa~nGD~~~~t 220 (512) T d1mtyd_ 158 RRTRTIGPLWKGM----KRVFSDGF----------ISGDAVECSLNLQLVGEACFTNPLIVAV---TEWAAANGDEITPT 220 (512) T ss_dssp HHHGGGSSHHHHH----HHHHTHHH----------HSSCHHHHHHHHTTTHHHHTHHHHHHHH---HHHHHHTTCCHHHH T ss_pred HHHHCCCCHHHHH----HHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCHHH T ss_conf 5540227315779----99999887----------3387899987654004541107899999---99998746910999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC-HHHHHHHH- Q ss_conf 99999856666699999999976553754220678999999999999876886----8875188847999-89999999- Q gi|254780964|r 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY----AHETMPKGFVGLN-APSCEQYM- 296 (352) Q Consensus 223 ~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~----~~~~~~~~~~Gl~-~~~~~~yi- 296 (352) ++..|..||++|+..|...+..+.++ |.- -+..+..+...+-.+..+=... .+|..+.- -.+ ++.-++|| T Consensus 221 l~~SiqsDEaRH~~~g~~tL~~~l~~-~~n-~~~~q~~id~~FWr~~r~~~~l~G~~mDY~tp~r--~~s~~e~w~~~i~ 296 (512) T d1mtyd_ 221 VFLSIETDELRHMANGYQTVVSIAND-PAS-AKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFK--VEPWVKTWDRWVY 296 (512) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--SSCHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHH T ss_conf 99999846756534009999999956-222-7999999999999888999999888887368764--3149999999999 Q ss_pred HHHHH---HHHHHCCCCCC Q ss_conf 99999---99997887988 Q gi|254780964|r 297 QFIAN---RRCHQIGLEPL 312 (352) Q Consensus 297 ~y~an---~rL~~lG~~~~ 312 (352) +..+. ++|..+|+++. T Consensus 297 ed~~g~~~~~L~~yGl~~P 315 (512) T d1mtyd_ 297 EDWGGIWIGRLGKYGVESP 315 (512) T ss_dssp TTTTTHHHHTTGGGTCCCC T ss_pred HHHHHHHHHHHHHHCCCCC T ss_conf 9999999999999489897 No 10 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Probab=98.03 E-value=0.00055 Score=43.37 Aligned_cols=202 Identities=17% Similarity=0.130 Sum_probs=118.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971464699999997200 Q gi|254780964|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 (352) Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~ 153 (352) -|+.-|+.|.++=+.-.-++...-+|+. .+...+ |+-+-=+.+.+-||+.|.+.|.-+=++|+..++- T Consensus 7 ~se~YkdAYSRINaIVIEGEqeA~~Nyi-~la~ll--P~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm--------- 74 (222) T d2oc5a1 7 TSDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLL--PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADM--------- 74 (222) T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC--GGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH--------- T ss_pred CCHHHHHHHHHHHEEEEECHHHHHHHHH-HHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------- T ss_conf 4078899998740155735087888699-999878--2218999999999988876888872277588793--------- Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHH Q ss_conf 189877889999974012101026777401499999999740001444114788998-9975980128999999985666 Q gi|254780964|r 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDES 232 (352) Q Consensus 154 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~-l~~~g~m~g~~~~i~~I~RDE~ 232 (352) .|..++...+... +.. -...-..+..+++.++++|. ||+--+ .--.=-=|=-.++-.-+.+||. T Consensus 75 ------~fA~~fF~~Lh~n-Fq~--A~~egk~~tCLlIQaliIE~------FAIaAY~iYipVAD~FARkITegVVkDEY 139 (222) T d2oc5a1 75 ------DFAREFFAPLRDN-FQT--ALGQGKTPTCLLIQALLIEA------FAISAYHTYIPVSDPFARKITEGVVKDEY 139 (222) T ss_dssp ------HHHHHHHHHHHHH-HHH--HHHTTCHHHHHHHHHTHHHH------HHHHHHHHHGGGSCHHHHHHHHHHHHHHH T ss_pred ------HHHHHHHHHHHHH-HHH--HHHCCCEEEHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf ------8999999999899-999--98659932149899999999------99998773110366777888776774477 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 669999999997655375422067899999999999987688688751888-479998999999999999999978879 Q gi|254780964|r 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 (352) Q Consensus 233 lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~lG~~ 310 (352) .|..||..-++.-.. .+++++.+--++.+-+-..-.+.+-++. ++||..+.+.+=---.-...|.+||+. T Consensus 140 ~HLN~Ge~WLk~~f~--------~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~IGf~ 210 (222) T d2oc5a1 140 THLNYGEAWLKANLE--------SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFN 210 (222) T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 760158999999999--------99999999888616399999999997899976889999999999999999975975 No 11 >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Probab=97.78 E-value=0.0015 Score=40.46 Aligned_cols=218 Identities=12% Similarity=-0.005 Sum_probs=143.8 Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH--HH Q ss_conf 8998999-9999999999864333345566640133057799999999999999778999999997146-----46--99 Q gi|254780964|r 73 GLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----DE--GE 144 (352) Q Consensus 73 ~Lt~~Ek-~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-----~~--~e 144 (352) +|++..+ +++...|+-+...+-....+. ..+....+.+.++.+..+|++.|..|++.-.+.+.-|++ +. +. T Consensus 130 ~l~~~w~~~~L~~~l~p~r~~E~ga~~~~-a~i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~ 208 (384) T d1mtyb_ 130 AMNPTWRDEFINRYWGAFLFNEYGLFNAH-SQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAV 208 (384) T ss_dssp GSCHHHHHTTTTTHHHHHHHHHHHHHHTT-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHH T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 19999999999998602407999999878-99986468689999999987668889999999999998747898623379 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHH Q ss_conf 99999720018987788999997401210102677740149999999974000144---411478899899759801289 Q gi|254780964|r 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIA 221 (352) Q Consensus 145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~ 221 (352) -=..+.++|..+.--+++.+.... .....+.+++.++++|+++ |++.|..-.+ +.+| =.-+. T Consensus 209 ~k~~W~~dp~wQg~R~~vE~~l~~-------------~~Dw~E~~vA~Nlv~dpll~~L~~~~f~~~~A-a~nG-D~~t~ 273 (384) T d1mtyb_ 209 PKAEWTNGEVYKSARLAVEGLWQE-------------VFDWNESAFSVHAVYDALFGQFVRREFFQRLA-PRFG-DNLTP 273 (384) T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHT-------------CCCHHHHHHHHHHTHHHHHHHHHHHTTHHHHG-GGGT-CCHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-CCHHH T ss_conf 988860480657799999989871-------------14499999998764886448999999999999-9769-80479 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHH Q ss_conf 9999998566666999999999765537542---2067899999999999987688688751888479-99899999999 Q gi|254780964|r 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQ 297 (352) Q Consensus 222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~G-l~~~~~~~yi~ 297 (352) ..+.....||..|...+..+++.+..++|+. ....++.|+.+....|.+.=.++.- +++....| -+.+.+..-++ T Consensus 274 ~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~~~a~~Al~~~~p-i~s~~p~~~~~~~~~~a~~~ 352 (384) T d1mtyb_ 274 FFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMG-LFAKLPAGTTDKEEITASLY 352 (384) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GGGGSCTTSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHH T ss_conf 99999998999999899999999984585332668999999999999999999998768-76106778788899999999 Q ss_pred HHHHHHHHHC Q ss_conf 9999999978 Q gi|254780964|r 298 FIANRRCHQI 307 (352) Q Consensus 298 y~an~rL~~l 307 (352) .+.+.-.... T Consensus 353 rv~~d~~~~~ 362 (384) T d1mtyb_ 353 RVVDDWIEDY 362 (384) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHCC T ss_conf 9998765302 No 12 >d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} Probab=97.76 E-value=0.0015 Score=40.31 Aligned_cols=230 Identities=11% Similarity=0.032 Sum_probs=144.5 Q ss_pred HHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 4798998520268998999-999999999986433334556664013305779999999999999977899999999714 Q gi|254780964|r 61 MQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 (352) Q Consensus 61 l~~D~~dw~t~~~Lt~~Ek-~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~ 139 (352) .-.....+. +|++..+ +++...|+-+...+-....+.. .+......+.++.+..+|++.|..|++--+++...|+ T Consensus 119 ~~~~~~~~~---~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a-~i~r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~ 194 (383) T d1mhyb_ 119 AYSSEGSIR---TIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIA 194 (383) T ss_dssp HHHHHTGGG---GSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999669620---089999999999986131089999998889-9986467589999999998878889999999999987 Q ss_pred C-----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHH Q ss_conf 6-----4--69999999720018987788999997401210102677740149999999974000144---411478899 Q gi|254780964|r 140 L-----D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQIL 209 (352) Q Consensus 140 ~-----~--~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~ 209 (352) . + .++-=..+.++|.-+.--+++.+.... ...-.+.+++.++++|+++ +++.|..- T Consensus 195 ~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva-------------~~Dw~E~~vA~NlV~e~ll~~L~~~~f~~~- 260 (383) T d1mhyb_ 195 KLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQG-------------VQDWNEILWAGHAVYDATFGQFARREFFQR- 260 (383) T ss_dssp HHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHS-------------CCCHHHHHHHHHHTHHHHHHHHHHTTTHHH- T ss_pred HHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH- T ss_conf 746898705689988984488689999999988731-------------765999999998879986589999999999- Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC Q ss_conf 8997598012899999998566666999999999765537542---206789999999999998768868875188--84 Q gi|254780964|r 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPK--GF 284 (352) Q Consensus 210 ~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l---~~~~~~~~i~~~~~eave~E~~~~~~~~~~--~~ 284 (352) ++..+-=.-+...+..+..|+..|...+..+++.+..+.|+. ....+..|+-+-...|.+.=..+. -+++. .+ T Consensus 261 -~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~a~~A~~~l~-pi~~~~p~~ 338 (383) T d1mhyb_ 261 -LATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFV-GLYAKVEKV 338 (383) T ss_dssp -HHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHG-GGGGGSCCC T ss_pred -HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC T ss_conf -999759705699999999899999999999999998469522155899999999999999999999867-876047754 Q ss_pred CC-CCHHHH-HHHHHHHHHHHH---HHCCCC Q ss_conf 79-998999-999999999999---978879 Q gi|254780964|r 285 VG-LNAPSC-EQYMQFIANRRC---HQIGLE 310 (352) Q Consensus 285 ~G-l~~~~~-~~yi~y~an~rL---~~lG~~ 310 (352) -+ ...+.. ...-+.+++..+ +.||++ T Consensus 339 ~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~ 369 (383) T d1mhyb_ 339 AGATDSAGVSEALQRVFGDWKIDYADKIGFR 369 (383) T ss_dssp TTTTSHHHHHHHHHHHHHHHHHHTHHHHTCC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 4311057899999999998854331541765 No 13 >d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=97.47 E-value=0.0035 Score=37.85 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=95.7 Q ss_pred HHHHHHHHHHH--HCCCCCCC-CCHHHH-------HHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC Q ss_conf 79999999999--45798703-674798-------998520-26899899999999999998643333455666---401 Q gi|254780964|r 40 GWAWEKYLSAC--NNHWMPTE-VPMQDD-------LALWKS-KNGLTDDERLMIKRNLGFFASSESLVANNIVL---AIY 105 (352) Q Consensus 40 ~~~~~ly~k~~--~~fW~peE-i~l~~D-------~~dw~t-~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~---~i~ 105 (352) |++-+...++. +.-|.|.+ +|-++. ..+|.. .+.|++.-+..+.- +.++-+|++. .+. T Consensus 9 ~~~e~~~~~hl~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~~l~~~~~~alv~--------~lltEdnLP~Y~~~l~ 80 (267) T d1za0a1 9 PVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEI--------LLILKDNLAGHHRELV 80 (267) T ss_dssp HHHHHHHHHHHHTCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHH--------HHHHHHC--------- T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHH--------HHHCCCCCCHHHHHHH T ss_conf 99999999861143222850249998898810147665996445575667878774--------1100357748999999 Q ss_pred HHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH Q ss_conf 330-5779999999999999977899999999714-64699999997200189877889999974012101026777401 Q gi|254780964|r 106 RHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLG-LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 (352) Q Consensus 106 ~~~-~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (352) ..+ ..+....+...|.++|+.|..+-...+..-+ .|+..+.. .+...+.+-++. ... T Consensus 81 ~~f~~d~~w~~wv~~WtaEEnrHg~aL~~YL~lsg~vDp~~~e~---------~~~~~~~~G~~~------------~~~ 139 (267) T d1za0a1 81 EHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED---------VRVQHVMKGYRA------------EKY 139 (267) T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTTC---------TTC----------------------CC T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH---------HHHHHHHHCCCC------------CCC T ss_conf 98055528999985155887558999999999951689157699---------999999853688------------987 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 4999999997400014441147889989975980128999999985666669999999997655375 Q gi|254780964|r 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 (352) Q Consensus 184 ~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p 250 (352) .-. ..++|.++-|-.-. .+--++++.--=|-++++...|++||.+|..|...+++.+.+-+| T Consensus 140 ~p~-~~l~y~~fqE~aT~----i~h~nla~~~~dPvL~~i~~rIA~DE~rH~~fy~~~v~~~le~dp 201 (267) T d1za0a1 140 TQV-ETLVYMAFYERCGA----VFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTR 201 (267) T ss_dssp CHH-HHHHHHHHHHHHHH----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH T ss_pred CHH-HHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 667-89999999876899----999999987389799999999988899999999999999987592 No 14 >d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]} Probab=97.46 E-value=0.004 Score=37.46 Aligned_cols=210 Identities=10% Similarity=0.005 Sum_probs=138.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CH--H-HH Q ss_conf 689989999999999999864333345566640133057799999999999999778999999997146---46--9-99 Q gi|254780964|r 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---DE--G-EL 145 (352) Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~---~~--~-e~ 145 (352) ..|++.-+.++...|+-+...+-..+.+.. .+......+.++.+..+|++.|..|++-.++....|.. +. . .- T Consensus 104 ~~l~~~w~~~l~~~l~p~r~~E~ga~~~~a-~~~r~~~~~~i~~~~~~qa~D~lR~aQ~~~~~~~~L~~~~~d~~~~~~~ 182 (322) T d2incb1 104 QMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRE 182 (322) T ss_dssp GGSCHHHHHHHHHHTTTHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 009999999999987304189999988689-9986567499999999998888899999999999987308996530789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9999720018987788999997401210102677740149999999974000144---4114788998997598012899 Q gi|254780964|r 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAE 222 (352) Q Consensus 146 f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~ 222 (352) -..+.++|..+.-- ++.+.+.. -..-++.+++.++++|+++ |++.|.-.. +.+|= ..++. T Consensus 183 k~~W~~dp~WQ~~R----~~vE~~l~----------~~Dw~E~~vA~nlv~e~l~~~l~~~~l~~~A--~~nGD-~~t~~ 245 (322) T d2incb1 183 RDVWENDPAWQGFR----ELIEKALI----------AWDWGEAFTAINLVTKPAVEEALLQQLGSLA--QSEGD-TLLGL 245 (322) T ss_dssp HHHHHHCHHHHHHH----HHHHHHTT----------CCSHHHHHHHHHTTHHHHHHHHHTHHHHHHH--HHTTC-HHHHH T ss_pred HHHHHHCCCHHHHH----HHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCC-CHHHH T ss_conf 99997096048899----99997860----------0469999999999899864689999999999--98699-31199 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999856666699999999976553754220678999999999999876886887518884799989999999999999 Q gi|254780964|r 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 (352) Q Consensus 223 ~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~ 302 (352) ++..+..||..|...+..+++.+.+ .|+ ..+-+.+++-.....|.+.=..++. +++.+ +.--.-++-.... T Consensus 246 l~~s~~~D~~r~~~w~~alvk~~~e-~~~-N~~llq~Wl~~W~~~a~~Al~~~~~-~~~~~------~~a~~~~~~a~~~ 316 (322) T d2incb1 246 LAQAQKRDAERHRRWSSALVKMALE-KEG-NREVLQKWVAKWEPLADKAIEAYCS-ALPDG------ENAIVEAKSASRY 316 (322) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-STT-HHHHHHHHHHHHHHHHHHHHHHHHH-HSTTH------HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCC------HHHHHHHHHHHHH T ss_conf 9999898999999999999999961-946-7999999999999999999999898-87332------2378999999999 Q ss_pred HHHHCC Q ss_conf 999788 Q gi|254780964|r 303 RCHQIG 308 (352) Q Consensus 303 rL~~lG 308 (352) +...|| T Consensus 317 ~~~~~g 322 (322) T d2incb1 317 VRQMMG 322 (322) T ss_dssp HHHTTC T ss_pred HHHHCC T ss_conf 987559 No 15 >d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Probab=96.92 E-value=0.014 Score=33.82 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=90.1 Q ss_pred HHHHHHHHHHH---HCCCCCCC-CC------HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCH Q ss_conf 79999999999---45798703-67------4798998520-268998999999999999986433334556664--013 Q gi|254780964|r 40 GWAWEKYLSAC---NNHWMPTE-VP------MQDDLALWKS-KNGLTDDERLMIKRNLGFFASSESLVANNIVLA--IYR 106 (352) Q Consensus 40 ~~~~~ly~k~~---~~fW~peE-i~------l~~D~~dw~t-~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~--i~~ 106 (352) ||+-+.-..+. ..-|.|.+ +| +.....+|.. .+.|+++-+-++...+.-=-.+=+.+. -+... +.+ T Consensus 27 ~~ve~~~~~~L~~v~~~WqPhD~lP~~~~~~F~~~~~e~~~~a~~lpd~~~v~lv~nllTEd~LPtY~~-~l~~~~g~~d 105 (345) T d1afra_ 27 NWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQT-MLNTLDGVRD 105 (345) T ss_dssp HHHHHHTGGGSCCGGGSCCGGGGSCCTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTHHHHHH-HHTTSTTTCC T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHH-HHHHHHCCCC T ss_conf 999999998744454365972359997668810003445564432888899999986652565862999-9988735233 Q ss_pred H--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH Q ss_conf 3--05779999999999999977899999999714-64699999997200189877889999974012101026777401 Q gi|254780964|r 107 H--LSNPECRQYLLRQAFEEAVHSHTFQYIITSLG-LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 (352) Q Consensus 107 ~--~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (352) . ....-...+...|.++|+.|+.+-...+-.-+ .|+..+.... ...+.. .+... ... T Consensus 106 ~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL~vsr~VDp~~lE~~~---------~~~~~~--------G~~~~---~~~ 165 (345) T d1afra_ 106 ETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTI---------QYLIGS--------GMDPR---TEN 165 (345) T ss_dssp SSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH---------HHHHHH--------CCCCS---CTT T ss_pred CCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH---------HHHHHC--------CCCCC---CCC T ss_conf 3578896455422351412046899999999881778917899999---------999818--------87899---998 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 499999999740001444114788998997598---012899999998566666999999999765537542 Q gi|254780964|r 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK---MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 (352) Q Consensus 184 ~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~---m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l 252 (352) .-. ..++|..+-|--- +.+--+.++..+ =|-++++...|++||.+|..|...+++...+-+|+- T Consensus 166 ~p~-~~~vY~sfQE~AT----~vsh~nt~~~a~e~gDPvL~~I~~rIA~DE~rH~~fY~~~v~~~Le~dPd~ 232 (345) T d1afra_ 166 SPY-LGFIYTSFQERAT----FISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDG 232 (345) T ss_dssp CHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_pred CHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 889-9999999998767----620999999987649979999999998788899999999999998669537 No 16 >d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=94.59 E-value=0.13 Score=27.06 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=79.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999864333345566640133057799999999999999778999999997146469999999720018987788999 Q gi|254780964|r 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 (352) Q Consensus 85 ~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~ 164 (352) +|.....++......+ ..+...++.|+++..+...+-+|..|.+.+..+++.++.++.... ..+.. T Consensus 15 ~l~~ai~~E~~a~~~Y-~~~a~~~~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~----~~~~~--------- 80 (158) T d2fzfa1 15 LLGMAIKAEIGAREFY-KSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVF----PKEHI--------- 80 (158) T ss_dssp HHHHHHHHHHHHHHHH-HHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCC----CSCCB--------- T ss_pred HHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----HHHHH--------- T ss_conf 9999999999999999-999977899669999999999999999999999998279964121----03433--------- Q ss_pred HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 997401210102677740149999999974000--144411478899899759801289999999856666699999999 Q gi|254780964|r 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE--GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 (352) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE--Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~ 242 (352) ................ ...++...+..| ++-+|.. +.+.=.=+.+.+++..|+.||..|......++ T Consensus 81 ----~~~~~~~~~~~~~~~~-~~~~l~~a~~~E~~a~~~Y~~------la~~~~d~~~~~l~~~i~~~E~~H~~~l~~~~ 149 (158) T d2fzfa1 81 ----GPELQPVARELEKVQD-IIDLIRWAMKAEEIAAEFYLK------LEEMVKEEEKKRLMRYLADMERGHYYTLRAEY 149 (158) T ss_dssp ----SCCCCCCCSCCCSHHH-HHHHHHHHHHHHHHHHHHHHH------HHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ----HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ----3554324765025689-999999999999999999999------98745849999999999999999999999999 Q ss_pred HHHHH Q ss_conf 97655 Q gi|254780964|r 243 NQIKI 247 (352) Q Consensus 243 ~~l~~ 247 (352) ..+.. T Consensus 150 d~l~~ 154 (158) T d2fzfa1 150 ELLLN 154 (158) T ss_dssp HHHHH T ss_pred HHHHC T ss_conf 98847 No 17 >d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Probab=87.96 E-value=0.7 Score=22.08 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=103.1 Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH----HHHHHHHHH Q ss_conf 6747989985202689989999999999999864333345566640133057799999999999999----778999999 Q gi|254780964|r 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA----VHSHTFQYI 134 (352) Q Consensus 59 i~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~----iH~~sYs~i 134 (352) -|+-+...+ +.||.+.-..+...-..+... -.+.+ ..+...++.++.+..+......|. .|...|... T Consensus 18 HPf~~~l~~----G~l~~e~~~~~~~Q~y~~v~~---f~r~l-a~~~~~~~~~~~~~~l~~~l~~e~~~~~~h~~l~~~~ 89 (213) T d1rcwa_ 18 HTFYVKWSK----GELTKEQLQAYAKDYYLHIKA---FPKYL-SAIHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQF 89 (213) T ss_dssp SHHHHHHHT----TCCCHHHHHHHHHHTHHHHHH---HHHHH-HHHHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHH T ss_pred CHHHHHHHC----CCCCHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 879999776----999999999999999999999---99999-9998844543778899999998862443059999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC Q ss_conf 99714646999999972001898778899999740121010267774014999999997400014441147889989975 Q gi|254780964|r 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 (352) Q Consensus 135 l~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~ 214 (352) ++.+|.+++++ ....-.|....-.++...... ... ...+++....+|.+.-.-+=...-.+.+. T Consensus 90 ~~~~g~~~~~~-~~~~~~p~t~a~~~~~~~~~~-----------~~~----~~~~~a~~~~~e~~~~~~~~~~~~~~~~~ 153 (213) T d1rcwa_ 90 VFALGVTPEEL-EAHEPSEAAKAKVATFMRWCT-----------GDS----LAAGVAALYSYESQIPRIAREKIRGLTEY 153 (213) T ss_dssp HHHTTCCHHHH-HHCCCCHHHHHHHHHHHHHHT-----------SSC----HHHHHHHHHHHHTTHHHHHHHHHHHHHHH T ss_pred HHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHC-----------CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99807999997-302100477899999999981-----------413----89999999999999998999999988871 Q ss_pred C-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9-80--12899999998566666999999999765537542206789999999999998768868875 Q gi|254780964|r 215 N-KM--VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 (352) Q Consensus 215 g-~m--~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~ 279 (352) . .. .++.---..+..|+ -|......++..+..+ -.+.+.+.+..+.++|..|-+.+ T Consensus 154 ~~~~~~~~~~~~~~h~~~D~-~H~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~f~D~~ 212 (213) T d1rcwa_ 154 FGFSNPEDYAYFTEHEEADV-RHAREEKALIEMLLKD--------DADKVLEASQEVTQSLYGFLDSF 212 (213) T ss_dssp SCCCSGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCSS--------CHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHH--------HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 79984777687799999999-9999999999877999--------99999999999999999998636 No 18 >d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Probab=82.43 E-value=1.2 Score=20.35 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=79.9 Q ss_pred HHHHHHHHHHH---HHHHHHHHHHCCHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998643---3334556664013305-7799999999999999778999999997146469999999720018987 Q gi|254780964|r 83 KRNLGFFASSE---SLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 (352) Q Consensus 83 ~~~l~~~~~~D---~~v~~~~~~~i~~~~~-~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k 158 (352) ..++..|...+ +...+.+.+.+. +. .+..+.++.-.+.+|.-|-+..+.++.-|..+...--+....+|.+..- T Consensus 23 ~~L~e~~GG~~GElsa~~qYl~Q~~~--~~~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~ 100 (266) T d1jkva_ 23 RRLQESLGGQWGETTGMMSYLSQGWA--STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATT 100 (266) T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHH T ss_conf 99999857973699999999998716--7883789999999888899999999999999835898763330112257787 Q ss_pred HHHHHHHHHHHCC-------C---HHHCCCCCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 7889999974012-------1---0102677740149999999974000--14441147889989975980128999999 Q gi|254780964|r 159 ANWALQYTQTLSS-------P---SFTTGTKDADQEFLQDLFVFYVVFE--GMWFYTGFAQILSLGRANKMVGIAEQYQY 226 (352) Q Consensus 159 ~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~i~~~~~lE--Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~ 226 (352) ..-....+..... . .+.-......-... ..+..++..| ++..|. .+.+.=.=|++.+++.+ T Consensus 101 ~~G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~-~DL~~NiaAE~~Ar~~Y~------rl~~~tdDp~vk~~L~f 173 (266) T d1jkva_ 101 MAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLV-ADMRFNVVRESEARLQVS------RLYSMTEDEGVRDMLKF 173 (266) T ss_dssp HHHSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHH-HHHHHHHHHHHHHHHHHH------HHHTTCCCHHHHHHHHH T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHH T ss_conf 53899600354167666458899978743005688889-999998999999999999------99984498659999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 98566666999999999765537 Q gi|254780964|r 227 IMRDESLHLNFGIDVINQIKIEN 249 (352) Q Consensus 227 I~RDE~lH~~f~~~l~~~l~~E~ 249 (352) |+.||..|..-....++.+..+. T Consensus 174 L~~rE~~H~~~f~~aLe~l~~~~ 196 (266) T d1jkva_ 174 LLARETQHQLQFMKAQEELEEKY 196 (266) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99998999999999999843115 No 19 >d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Probab=81.22 E-value=1.4 Score=20.07 Aligned_cols=189 Identities=10% Similarity=-0.022 Sum_probs=95.2 Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67479899852026899899999999999998643333455666401330577999999999999997789999999971 Q gi|254780964|r 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 (352) Q Consensus 59 i~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l 138 (352) -||-++..+ +.|+++.-..+..-=..+...- ++.+ .......+.++.+.++......+..|.+.+...+..+ T Consensus 23 HPFv~~l~~----GtL~~e~f~~yl~QD~~yl~~~---~r~~-a~~~~ka~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 94 (215) T d1udda_ 23 HPFVVQLYS----GTLPLEKFKFYVLQDFNYLVGL---TRAL-AVISSKAEYPLMAELIELARDEVTVEVENYVKLLKEL 94 (215) T ss_dssp CHHHHHHHH----TCSCHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHSCTTHHHHHHHHHHHHTTHHHHHHHHHHHHT T ss_pred CHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 989999775----9999999999999989999999---9999-9998725609999999999999999999999999990 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-CCC Q ss_conf 4646999999972001898778899999740121010267774014999999997400014441147889989975-980 Q gi|254780964|r 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKM 217 (352) Q Consensus 139 ~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~-g~m 217 (352) |.+++++ ......|....-.+++...-.. ..++.. +++...+|.++...+- .+..+ +.- T Consensus 95 gi~~~~~-~~~~~~~~~~~y~~~l~~~a~~--------------~~~~~~-l~al~~c~~~Y~~~~~----~~~~~~~~~ 154 (215) T d1udda_ 95 DLTLEDA-IKTEPTLVNSAYMDFMLATAYK--------------GNIIEG-LTALLPCFWSYAEIAE----YHKDKLRDN 154 (215) T ss_dssp TCCHHHH-HHSCCCHHHHHHHHHHHHHHHH--------------SCHHHH-HHHHHHHHHHHHHHHH----HTHHHHTTC T ss_pred CCCHHHH-CCCCCCHHHHHHHHHHHHHHHC--------------CCHHHH-HHHHHHHHHHHHHHHH----HHHHHCCCC T ss_conf 9998784-4247532567999999998717--------------988779-9999999999999999----998743668 Q ss_pred CH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 12--899999998566-6669999999997655375422067899999999999987688688751888 Q gi|254780964|r 218 VG--IAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 (352) Q Consensus 218 ~g--~~~~i~~I~RDE-~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~ 283 (352) ++ ..+=|+.-.-|+ .-++... +.+..+.+ +...+++.+++..+.++|..|=+.++..| T Consensus 155 ~~~~y~~Wi~~y~~~~f~~~v~~l----~~~~d~~~----~~~~~~~~~iF~~~~~lE~~Fwd~ay~~~ 215 (215) T d1udda_ 155 PIKIYREWGKVYLSNEYLNLVGRL----RKIIDSSG----HSGYDRLRRIFITGSKFELAFWEMAWRGG 215 (215) T ss_dssp SCHHHHHHHHGGGSHHHHHHHHHH----HHHHHTSC----SSCHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHCCCHHHHHHHHHH----HHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 874269999874787999999999----99998679----88999999999999999999999987288 No 20 >d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Probab=79.71 E-value=1.5 Score=19.73 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=61.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHC-----CC---HHH Q ss_conf 77999999999999997789999999971-4646999999972001---898778--8999997401-----21---010 Q gi|254780964|r 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPS---ITAKAN--WALQYTQTLS-----SP---SFT 175 (352) Q Consensus 110 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~---i~~k~~--~~~~~~~~~~-----~~---~~~ 175 (352) .+..+.++.-.+.+|.-|-+..+.++.-| ...+.+.-.. -.+|. +..-.+ ....+...-. +. .+. T Consensus 56 ~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~p~~~~~~-~~dp~~~~~~~~~~~~n~~h~i~~g~g~~~~ds~G~pWt 134 (299) T d2cwla1 56 LKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEE-GVDPESAPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWN 134 (299) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCSCCC-CCCGGGCTTGGGGSSSCSHHHHTSSSSCCSBCTTSCBCB T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-CCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCC T ss_conf 2259999999999998899999999999964897677762-247015677765426870444114888774688899587 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 26777401499999999740001444114788998--9975980128999999985666669999999997655 Q gi|254780964|r 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS--LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352) Q Consensus 176 ~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~--l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352) -......-... ..+..++..|. =|.+.+ +.+.=.=|++.+++.+++.+|..|..-....+..+.. T Consensus 135 ~~Yv~~sGnl~-aDL~~Ni~aE~------~Ar~~y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ALe~l~g 201 (299) T d2cwla1 135 GEYVFTSGNLI-LDLLHNFFLEV------AARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTG 201 (299) T ss_dssp GGGCCCCSCHH-HHHHHHHHHHH------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCCHH-HHHHHHHHHHH------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 54207789999-99999999999------999999999985389218999999999889999999999999757 No 21 >d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Probab=74.82 E-value=2.1 Score=18.82 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=102.9 Q ss_pred HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98643333455666401330577999999999999997789999999971-46469999999720018987788999997 Q gi|254780964|r 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQYTQ 167 (352) Q Consensus 89 ~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~i~~k~~~~~~~~~ 167 (352) ++=.+-+.+..+. ..+...|.-|....++..+-.|.=|++.+-.+...+ +..+++.+ ++...+.- | T Consensus 12 laDd~lil~~R~s-eW~~~aP~LEediAlanialD~lGhAr~ly~~a~el~g~~~eD~l-a~~R~~~~-----f------ 78 (244) T d1otka_ 12 LGDNCLVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTL-AFTRDERQ-----F------ 78 (244) T ss_dssp HHHHHHHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHH-HHSCCGGG-----C------ T ss_pred HCCHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHCCHHH-----H------ T ss_conf 7078999998673-886039967999999999999998999999999983699818889-87538115-----3------ Q ss_pred HHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 401210102677740149999999974000144411478899899-7598012899999998566666999999999765 Q gi|254780964|r 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 (352) Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~ 246 (352) .+. ... .-+...+...++ --+||..|..+.+=. .+..-+-++.+...|++.|..|..++..-+..+. T Consensus 79 --rn~--~l~-e~P~~dwa~tv~-------r~fl~d~~~~~~l~~L~~ss~~pLa~ia~K~~kEe~yH~~h~~~W~~rL~ 146 (244) T d1otka_ 79 --SNL--LLV-EQPNGNFADTIA-------RQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLG 146 (244) T ss_dssp --CCC--GGG-GSCCCSHHHHHH-------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred --HCH--HHH-CCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf --133--887-189888999999-------99999999999999987388778999999999999999999999999998 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 53754220678999999999999876886887518884---------79998999999999999999978879 Q gi|254780964|r 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF---------VGLNAPSCEQYMQFIANRRCHQIGLE 310 (352) Q Consensus 247 ~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~---------~Gl~~~~~~~yi~y~an~rL~~lG~~ 310 (352) .- |++..+++. +|++.=-.|+-.+|+.+. ++.+.+.+.+=-.-.....|...|++ T Consensus 147 ~g-----TeEsr~rmq----~Al~~lwp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~vl~~agL~ 210 (244) T d1otka_ 147 NG-----TDVSGQKMQ----QAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN 210 (244) T ss_dssp TS-----CHHHHHHHH----HHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCC T ss_pred HC-----CHHHHHHHH----HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 66-----889999999----99999889999875788479999877998998999999999999999982799 No 22 >d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Probab=72.57 E-value=2.3 Score=18.46 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=70.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998643333455666401330577999999999999997789999999971464699999997200189877889999 Q gi|254780964|r 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 (352) Q Consensus 86 l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~ 165 (352) |..-..++..-..-+. .+...+ +|+++..+...+-+|--|.+.+..+++.++.++.. ......+.... T Consensus 11 l~~Ai~~E~~~~~~Y~-~~a~~~-~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-------- 78 (149) T d1vjxa_ 11 LTVAIRLEEEGERFYR-ELSEHF-NGEIKKTFLELADQERIHAEIFRKMSDQENWDEVD--SYLAGYAFYEV-------- 78 (149) T ss_dssp HHHHHHHHHHHHHHHH-HHTTSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT--CBCCSBCCCCC-------- T ss_pred HHHHHHHHHHHHHHHH-HHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHH-------- T ss_conf 9999999999999999-999767-99999999999999999999999999874799653--88877753223-------- Q ss_pred HHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 974012101026777401499999999740001444114788998997598012899999998566666999999999 Q gi|254780964|r 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 (352) Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~ 243 (352) . ............+....+ ...+-.|... ..|+ ..+...-.=|.+.+++..|+.||..|......+.+ T Consensus 79 ~--~~~~~~~~~~~~~~~~~l----~~ai~~E~~a--~~~Y--~~l~~~~~d~~~r~~~~~i~~eE~~H~~~l~~l~~ 146 (149) T d1vjxa_ 79 F--PDTSEILRRKDLTLKEVL----DIAISVEKDS--IILY--YELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKR 146 (149) T ss_dssp C--CCCTTGGGCSCCCHHHHH----HHHHHHHHHH--HHHH--HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred H--HHHHHHHHCCCCCHHHHH----HHHHHHHHHH--HHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6--656788730679999999----9999988879--9999--99998789999999999999999999999999986 No 23 >d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Probab=60.90 E-value=3.9 Score=16.93 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=64.5 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH Q ss_conf 33057799999999999999778999999997146469999999720018987788999997401210102677740149 Q gi|254780964|r 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 (352) Q Consensus 106 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352) +.-.-|++..++..++..|..|+......+..+|..+.- ...| ......- T Consensus 33 ~~~g~~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~-----~~~~-------------------------~~~~~~~ 82 (141) T d1j30a_ 33 DEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPA-----TDKP-------------------------IGTLEQM 82 (141) T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTT-----TSCB-------------------------CSSHHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCC-------------------------CCCHHHH T ss_conf 778819899999999999999999999999737899987-----7767-------------------------5751557 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999740001444114788998997598012899999998566666999999999765 Q gi|254780964|r 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 (352) Q Consensus 186 ~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~ 246 (352) +...+. .-..|..-.|..|+ ..++.-.-+++.+.+++|+.||..|......++..+. T Consensus 83 l~~~~~-~e~~e~~~~y~~~~---~~A~~e~d~~~~~~~~~i~~~E~~H~~~f~~~l~~l~ 139 (141) T d1j30a_ 83 IESAIA-GETYEWTQMYPGFA---KVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 139 (141) T ss_dssp HHHHHH-HHHHHHHTHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHH-HHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999-87999999999999---9999858899999999999999999999999999876 No 24 >d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Probab=58.74 E-value=4.3 Score=16.68 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=43.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 89989999999999999864333345566640133057799999999999999778999999997146 Q gi|254780964|r 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 (352) Q Consensus 73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~ 140 (352) +||+.-+++..-+.+..+-+| +.++-......+++|+++.++.-.+-+|-.|.-.+-.+++.+-+ T Consensus 9 ~Ls~e~~d~~Rai~sli~Ele---AI~~Y~q~a~~t~d~~~k~Vl~hia~EEkeH~g~~LelLrr~Dp 73 (91) T d1zpya1 9 ELSDETRDMHRAIISLREELE---AVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDP 73 (91) T ss_dssp GSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH T ss_pred HCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH T ss_conf 739878999999999999999---99999999985799999999999888999999999999998798 No 25 >d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=53.52 E-value=5.2 Score=16.12 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=68.1 Q ss_pred HHHHHHHH-HCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 33455666-40133057799999999999999778999999997146469999999720018987788999997401210 Q gi|254780964|r 95 LVANNIVL-AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 (352) Q Consensus 95 ~v~~~~~~-~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~ 173 (352) .+.+.... .+.....-|++...+...+..|..|++-....+..++.+++.+...+. T Consensus 21 A~~~Y~~~A~~a~~~G~~~lA~~f~~~A~eE~~HA~~~~~~i~~l~~~~~~L~~~~~----------------------- 77 (133) T d1nnqa1 21 AHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIE----------------------- 77 (133) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH----------------------- T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------- T ss_conf 999999999999887848799999999999999999999988466127866698897----------------------- Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10267774014999999997400014441147889989975980128999999985666669999999997655 Q gi|254780964|r 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352) Q Consensus 174 ~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352) . --.|.+-.|..|+-. .+.-...++++.+..|++||..|......++..+.+ T Consensus 78 -----------------~--e~~e~~~~Y~e~~~~---a~~egd~~~a~~f~~i~~~E~~Ha~~f~~~l~~le~ 129 (133) T d1nnqa1 78 -----------------G--ETFEVEEMYPVYNKA---AEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK 129 (133) T ss_dssp -----------------H--HHHHHHTHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred -----------------H--HHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf -----------------7--689999999999999---988799899999999999999999999999998885 No 26 >d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Probab=51.63 E-value=5.5 Score=15.92 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=66.9 Q ss_pred CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH Q ss_conf 01330577999999999999997789999999971464699999997200189877889999974012101026777401 Q gi|254780964|r 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 (352) Q Consensus 104 i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (352) ..+...-|++..++..++.+|..|+.....++.-+|.++.. ..+. ........ T Consensus 32 ~a~~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~------~~~~---------------------~~~~~~~~ 84 (146) T d1lkoa1 32 QAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVA------AFPA---------------------GIIADTHA 84 (146) T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCC------CCCC---------------------CCCCCHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCC---------------------CCCCCCHH T ss_conf 98787819999999999999999999999998706998677------7786---------------------65677599 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4999999997400014441147889989975980128999999985666669999999997655 Q gi|254780964|r 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352) Q Consensus 184 ~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352) ........ .--|.+-.|..|+- .++.-.-+.+...+++|..||..|......++..+.+ T Consensus 85 ~l~~~~~~--~e~e~~~~y~~~~~---~a~~~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~l~~ 143 (146) T d1lkoa1 85 NLIASAAG--EHHEYTEMYPSFAR---IAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE 143 (146) T ss_dssp HHHHHHHH--HHHHHHTHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHH--HHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999--88999999999999---9998799999999999999999999999999999875 No 27 >d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Probab=49.32 E-value=6 Score=15.68 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=97.4 Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 367479899852026899899999999999998643333455666401330577999999999999-9977899999999 Q gi|254780964|r 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE-EAVHSHTFQYIIT 136 (352) Q Consensus 58 Ei~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~-E~iH~~sYs~il~ 136 (352) .-||-++..+ +.|+++.-..+..--..+...-. +.+ ..+...+++++.+..+..+... +.-|.+.+....+ T Consensus 27 ~HPFv~~l~~----GtL~~~~f~~yl~Qdy~yl~~~~---r~l-a~~~~ka~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 98 (217) T d1z72a1 27 NHRFVKELFA----GTIENKVLKDYLIQDYHFFDAFL---SML-GACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFK 98 (217) T ss_dssp TCHHHHHHHH----TCCCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999756----99999999999999999999999---999-999871998588999999999999877899999999 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-C Q ss_conf 714646999999972001898778899999740121010267774014999999997400014441147889989975-9 Q gi|254780964|r 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-N 215 (352) Q Consensus 137 ~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~-g 215 (352) .+|.+++++ ....-.|....-.+++...... ..+...+.+ ...+|.++.. .+++ . T Consensus 99 ~~gi~~~~~-~~~~~~p~t~~y~~~l~~~a~~--------------~~~~~~l~a-l~~~~~~Y~~--------~~~~~~ 154 (217) T d1z72a1 99 ELKVAENDY-LEVTLHPVTKAFQDLMYSAVAS--------------SDYAHLLVM-LVIAEGLYLD--------WGSKDL 154 (217) T ss_dssp HTTCCTHHH-HSCCCCHHHHHHHHHHHHHHHH--------------TCHHHHHHH-HHHHHHHHHH--------HHTCSS T ss_pred HCCCCHHHC-CCCCCCHHHHHHHHHHHHHHHC--------------CCHHHHHHH-HHHHHHHHHH--------HHHHHH T ss_conf 909896660-2457783866999999998725--------------999999999-9999999999--------998986 Q ss_pred CCCHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 801289999999---8566-66699999999976553754220678999999999999876886887 Q gi|254780964|r 216 KMVGIAEQYQYI---MRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 (352) Q Consensus 216 ~m~g~~~~i~~I---~RDE-~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~ 278 (352) ..+.--.-..|| .-++ .-|+.....++..+.. +++-.+++.+.+..+.++|..|=+. T Consensus 155 ~~~~~~~y~~wi~~~~~~~f~~~v~~l~~~ld~~~~------~~~~~~~~~~~f~~~~~lE~~Fwd~ 215 (217) T d1z72a1 155 ALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGK------NREDLTELQQRWNQAVALELAFFDI 215 (217) T ss_dssp CCCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 388875177999980998799999999999998829------9999999999999999999999762 No 28 >d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Probab=41.60 E-value=7.8 Score=14.89 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=13.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77999999999999997789999999 Q gi|254780964|r 110 NPECRQYLLRQAFEEAVHSHTFQYII 135 (352) Q Consensus 110 ~~E~~~~l~~q~~~E~iH~~sYs~il 135 (352) .||+...+..|+.+|--=+-.|-.+- T Consensus 8 ~~e~~~aLN~qi~~El~as~~Yl~ma 33 (171) T d1rcda_ 8 HQDCEAGLNRTVNLKFHSSYVYLSMA 33 (171) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999999999 No 29 >d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]} Probab=37.49 E-value=9 Score=14.47 Aligned_cols=177 Identities=11% Similarity=0.081 Sum_probs=85.4 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCC Q ss_conf 85202689989999999999999864333345566640133057799999999999999------778999999997146 Q gi|254780964|r 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA------VHSHTFQYIITSLGL 140 (352) Q Consensus 67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~------iH~~sYs~il~~l~~ 140 (352) .|.+ ++|+.+.-..+...--+ .. ..-.+.+ ..+...++.++.+..+..-...|- -|.+.|-..++.+|. T Consensus 31 ~l~~-G~l~~e~l~~y~~Q~y~--y~-~~f~r~l-aai~a~~~d~~~r~~ll~nl~ee~g~~~~~~H~~l~~~f~~~lGl 105 (254) T d1otva_ 31 AMHN-GDATRKQIQGWVANRFY--YQ-TTIPLKD-AAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGL 105 (254) T ss_dssp HHHH-TCCCHHHHHHHHHHHHH--HH-HHHHHHH-HHHHHTCCCHHHHHHHHHHHHHHHCSTTCCCHHHHHHHHHHHTTC T ss_pred HHHC-CCCCHHHHHHHHHHHHH--HH-HHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC T ss_conf 9867-99999999999999999--99-9869999-999953998899999999999885566776377999999999099 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--C--C Q ss_conf 46999999972001898778899999740121010267774014999999997400014441147889989975--9--8 Q gi|254780964|r 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA--N--K 216 (352) Q Consensus 141 ~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~--g--~ 216 (352) +.+++-+.-.--|..+.-.+...... .. .. ... .+++...|+..-.. + ..+ | + T Consensus 106 ~~e~v~~~~~~lp~t~~~v~~~~~~~---~~-----------~~-~~~-~~a~~~~E~~~p~i------~-~~~~~gl~~ 162 (254) T d1otva_ 106 SRDDLLSERHVLPGVRFAVDAYLNFA---RR-----------AC-WQE-AACSSLTELFAPQI------H-QSRLDSWPQ 162 (254) T ss_dssp CHHHHHTCTTCCHHHHHHHHHHHHHH---HH-----------SC-HHH-HHHGGGGGGGCCST------T-CCSSCSSTT T ss_pred CHHHHHCCCCCCHHHHHHHHHHHHHH---CC-----------CC-HHH-HHHHHHHHHHHHHH------H-HHHHHHHHH T ss_conf 99997334668889999999999986---33-----------43-889-99999999982999------9-999987898 Q ss_pred CCH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 012--8999999----9856666699999999976553754220678999999999999876886887 Q gi|254780964|r 217 MVG--IAEQYQY----IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 (352) Q Consensus 217 m~g--~~~~i~~----I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~ 278 (352) .-| ......+ +.-| ..|+..+..++..+.. +.+.++.+.+.+..+.+++-.|.+- T Consensus 163 ~y~~i~~~~l~~F~~h~~~d-~~h~e~~~~l~~~~~~------t~e~q~~~l~a~~~s~~~lw~flD~ 223 (254) T d1otva_ 163 HYPWIKEEGYFYFRSRLSQA-NRDVEHGLALAKAYCD------SAEKQNRMLEILQFKLDILWSMLDA 223 (254) T ss_dssp TCTTSCHHHHHHHHHHHHTC-CSCTTHHHHHHHHHCC------SHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65766888878999979871-8989999999999839------9999999999999999999999999 No 30 >d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Probab=27.45 E-value=13 Score=13.37 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=65.3 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH Q ss_conf 33057799999999999999778999999997146469999999720018987788999997401210102677740149 Q gi|254780964|r 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 (352) Q Consensus 106 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (352) +....|+++..+...+.+|.-|.+.+..++..++.++...... ..+... ... .........+.... T Consensus 29 ~~~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~-~~~~~~~~~~~~~~ 94 (152) T d2oh3a1 29 EAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQY--RWKTPP-----------EVG-DENDIHYLMTPYHA 94 (152) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGT--SCCCCC-----------CSS-CC---CGGGSHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH--CCCCCH-----------HHH-HHHHHCCCCCHHHH T ss_conf 6547799999999999999999999999987258997404552--024305-----------677-77750035789999 Q ss_pred HHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999974000--14441147889989975980128999999985666669999999997655 Q gi|254780964|r 186 LQDLFVFYVVFE--GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 (352) Q Consensus 186 ~~~~i~~~~~lE--Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~ 247 (352) + ..++-.| ++-||..+ ...=.=+.+..++..++++|..|......+++.+.. T Consensus 95 l----~~Al~~E~~a~~~Y~~~------a~~~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~~~~ 148 (152) T d2oh3a1 95 L----RYARDNEIRGMEYYKEA------AANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPR 148 (152) T ss_dssp H----HHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC T ss_pred H----HHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9----99999789999999999------988689999999999999999999999999871477 No 31 >d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]} Probab=25.86 E-value=14 Score=13.18 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=7.9 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 0128999999985666669 Q gi|254780964|r 217 MVGIAEQYQYIMRDESLHL 235 (352) Q Consensus 217 m~g~~~~i~~I~RDE~lH~ 235 (352) +||+++-++.-+..|.-|. T Consensus 57 l~GfakfF~~~S~EE~eHA 75 (200) T d1z6oa1 57 RAGFSKLFKKLSDEAWSKT 75 (200) T ss_dssp CHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 3659999999999999999 No 32 >d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Probab=23.91 E-value=15 Score=12.94 Aligned_cols=64 Identities=13% Similarity=0.004 Sum_probs=25.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 80128999999985666669999999997655--375422067--89999999999998768868875 Q gi|254780964|r 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWTKE--FQQKSRTMLHEATLLEIAYAHET 279 (352) Q Consensus 216 ~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~--E~p~l~~~~--~~~~i~~~~~eave~E~~~~~~~ 279 (352) -++|++.-++..+.+|.-|..-....+...-. ..+.+...+ ....+.+++..|+++|..-+..+ T Consensus 43 ~l~g~a~~f~~~s~EE~~HA~~l~~yl~~rgg~~~~~~i~~~~~~~~~s~~~~~~~al~~Ek~v~~~l 110 (173) T d1bg7a_ 43 ALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQAL 110 (173) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 47999999999999999999999999995578860277778988777878569999999999999999 No 33 >d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Probab=22.18 E-value=16 Score=12.71 Aligned_cols=24 Identities=4% Similarity=0.174 Sum_probs=10.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 012899999998566666999999 Q gi|254780964|r 217 MVGIAEQYQYIMRDESLHLNFGID 240 (352) Q Consensus 217 m~g~~~~i~~I~RDE~lH~~f~~~ 240 (352) ++|+++-++..+-+|.-|..-... T Consensus 43 l~g~a~~f~~~s~EE~~HA~~l~~ 66 (179) T d1lb3a_ 43 LEGVGHFFRELAEEKREGAERLLE 66 (179) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 188999999999999999999999 No 34 >d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Probab=21.60 E-value=17 Score=12.64 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=22.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHH Q ss_conf 99899999999999998643333455666401330577999999 Q gi|254780964|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 (352) Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l 117 (352) ||..||.+++.....+.......+..+-..+... .|+.+.++ T Consensus 2 Ls~~q~~lik~sw~~~~~~~~~~~~~ff~rlF~~--~P~~~~~F 43 (150) T d1cqxa1 2 LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEA--HPELKNVF 43 (150) T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH--CGGGGGTS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHH T ss_conf 5989999999999999974999999999999988--98589886 No 35 >d3sdha_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]} Probab=21.23 E-value=17 Score=12.59 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=14.9 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 68998999999999999986 Q gi|254780964|r 72 NGLTDDERLMIKRNLGFFAS 91 (352) Q Consensus 72 ~~Lt~~Ek~~~~~~l~~~~~ 91 (352) +.||++||..+......+.. T Consensus 7 ~~LT~~~k~~v~~sW~~v~~ 26 (145) T d3sdha_ 7 AQLTADVKKDLRDSWKVIGS 26 (145) T ss_dssp HTCCHHHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHHHHHC T ss_conf 77999999999999999874 Done!