BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP
Sbjct: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ
Sbjct: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD
Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID
Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA
Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD
Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352


>gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 372

 Score =  601 bits (1549), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 276/352 (78%), Positives = 313/352 (88%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A+  GL PIQ G  R++ D+KRM+NARSDVNQLLPLKY WAWEKYL  CNNHWMPTEV 
Sbjct: 21  IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ
Sbjct: 81  MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D
Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID
Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT++FQQ+ R ML EA LLE+AY  +TMPK F+G+NA  CE+YM FI 
Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G  L WD
Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372


>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
           fusca YX]
 gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 354

 Score =  594 bits (1532), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 274/351 (78%), Positives = 309/351 (88%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N TGL  IQ+G  RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV M
Sbjct: 4   VNTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSM 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQA
Sbjct: 64  QADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQA 123

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YT+ L +P+FTTGT +A
Sbjct: 124 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEA 183

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 184 DQAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 243

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWT+EFQ + RTML EA  LE AY  ETMP+G +GLNA  CEQYM+FI +
Sbjct: 244 INQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITD 303

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  Q+GL P+F  TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD
Sbjct: 304 RRAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354


>gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium
           sp. BNC1]
 gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1]
          Length = 369

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 273/348 (78%), Positives = 303/348 (87%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I+ G  RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D
Sbjct: 22  TGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 81

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE
Sbjct: 82  IALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 141

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L  P+F TGT +ADQ 
Sbjct: 142 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEADQA 201

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 202 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 261

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK ENPHLWT EFQ++ R ML +A  LE AY  +TMP+GF+GLNA  CEQYM FIANRRC
Sbjct: 262 IKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIANRRC 321

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 322 AQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369


>gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 377

 Score =  587 bits (1513), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 273/351 (77%), Positives = 299/351 (85%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A  TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 27  AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 87  QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENPHLWTK FQ + R M+ EA  LE AY  +TMP+GF+GLNA  CEQYM FIAN
Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377


>gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           hamburgensis X14]
 gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 416

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 270/348 (77%), Positives = 296/348 (85%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I     RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV MQ D
Sbjct: 69  TGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSMQAD 128

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE
Sbjct: 129 IALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 188

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L  P F TGT +ADQ 
Sbjct: 189 AVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEADQA 248

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 249 FLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 308

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CEQYM  IANRRC
Sbjct: 309 IKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIANRRC 368

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 AQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416


>gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
 gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
          Length = 389

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+ TGL  I  G  RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M
Sbjct: 39  ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 99  QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV
Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWTK FQ + R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IAN
Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389


>gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 371

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/348 (77%), Positives = 297/348 (85%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I     RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D
Sbjct: 24  TGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 83

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           LA+W+S++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE
Sbjct: 84  LAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 143

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+HTFQYI  SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ 
Sbjct: 144 AIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQA 203

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 204 FLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 263

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLW+  FQ++ R ML EA  LE+AY  +TMP+GF+GLNA  CE YM FI NRRC
Sbjct: 264 IKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRRC 323

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL P+F  T+NPFPWMSE IDLKKEKNFFETRV EYQ G  LKWD
Sbjct: 324 AQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371


>gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
 gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
          Length = 373

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/348 (77%), Positives = 300/348 (86%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 26  TGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQAD 85

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE
Sbjct: 86  IALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 145

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++ADQ 
Sbjct: 146 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEADQS 205

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 206 FLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 265

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+EN HLWTK FQ+  R M+ +A  LE AY  +TMP+GF+GLNA  CEQYM FIANRRC
Sbjct: 266 IKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRC 325

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 326 AQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373


>gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           winogradskyi Nb-255]
 gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255]
          Length = 391

 Score =  580 bits (1496), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 268/348 (77%), Positives = 295/348 (84%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D
Sbjct: 44  AGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 103

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE
Sbjct: 104 IALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 163

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +ADQ 
Sbjct: 164 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEADQA 223

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+INQ
Sbjct: 224 FLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDIINQ 283

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IANRRC
Sbjct: 284 IKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIANRRC 343

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 344 AQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391


>gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 360

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/348 (76%), Positives = 301/348 (86%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           +GL  I+   +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 13  SGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQAD 72

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQAFEE
Sbjct: 73  IALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFEE 132

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YTQ L +P F TGT +ADQ 
Sbjct: 133 AVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEADQA 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 193 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 252

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW++EFQ + R ML EA  LE+AY  ETMP+G +GLNA  CE+YM FI +RR 
Sbjct: 253 IKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITDRRA 312

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL P+F  TENPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 313 EQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360


>gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris BisB18]
 gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 386

 Score =  575 bits (1481), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 265/350 (75%), Positives = 297/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I     RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 37  DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW S++GLT+DER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 97  ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L  P+F TGT +AD
Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENP LWT  FQ++ R ML EA  LE AY+ +TMP+GF+GLNA  CEQYM FI NR
Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386


>gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 360

 Score =  575 bits (1481), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 261/349 (74%), Positives = 300/349 (85%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           ++GL  I     RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ 
Sbjct: 12  SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE
Sbjct: 72  DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI  SLGLDEGELFNMYRE+PSI+ K  WAL+YTQ L +P F  GT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQ++ RTML EA  LE+AY  +TMP+G +GLNA  CE+YM+FI NRR
Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C Q+GLEP+F  T NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360


>gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
 gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
          Length = 358

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/347 (76%), Positives = 296/347 (85%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  I+ G  RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+
Sbjct: 12  GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALW+S NGLT DER  IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA
Sbjct: 72  ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L  P F TGT +ADQ F
Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI
Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW + FQ + RTML EA  LEIAY  +TMP G +GLNA  CEQYM+FI NRRC 
Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GLEP+F  TENPFPWMSE +DLKKEKNFFETRVTEY  G  L WD
Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358


>gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 349

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 261/340 (76%), Positives = 298/340 (87%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWKS +
Sbjct: 10  GAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWKSPD 69

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+HTFQ
Sbjct: 70  GLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQ 129

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI  SLGLDEGELFN YREVPSI  K +WAL+YT+ L  P+FTTGT +ADQEFL+DL  F
Sbjct: 130 YICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDLVAF 189

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           YVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK ENPHL
Sbjct: 190 YVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAENPHL 249

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EFQQ+ R ML EA  LE+AYAH+TMP+  +GL+A  CEQYM FI +RR  Q+GL+P+
Sbjct: 250 WTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLDPV 309

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F   ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD
Sbjct: 310 FGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349


>gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris TIE-1]
 gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           TIE-1]
          Length = 373

 Score =  571 bits (1471), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/350 (75%), Positives = 290/350 (82%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 24  DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84  ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  P F TGT   D
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL DL  FYVVFEGMWFYTGFAQILSLGR  KM GIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+EN  +WT  FQ   R M+H+A  LE AY  +TMP G +GLNA  CE YM FIANR
Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373


>gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
 gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
          Length = 357

 Score =  571 bits (1471), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 261/348 (75%), Positives = 296/348 (85%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 10  TGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAMQAD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAFEE
Sbjct: 70  IALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEE 129

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +ADQ 
Sbjct: 130 AVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQA 189

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQ
Sbjct: 190 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQ 249

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM F+ +RR 
Sbjct: 250 IKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTDRRA 309

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 310 QQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
 gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
          Length = 357

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/348 (74%), Positives = 296/348 (85%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV MQ D
Sbjct: 10  TGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAMQAD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAFEE
Sbjct: 70  IALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEE 129

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +ADQ 
Sbjct: 130 AVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQA 189

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQ
Sbjct: 190 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQ 249

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM FI +RR 
Sbjct: 250 IKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITDRRA 309

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL P++   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 310 QQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 374

 Score =  567 bits (1461), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/348 (76%), Positives = 293/348 (84%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I     RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 27  TGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQAD 86

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAFEE
Sbjct: 87  IALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAFEE 146

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  PSF TGTK+ DQ 
Sbjct: 147 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETDQA 206

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ
Sbjct: 207 FLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 266

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK EN HLW+K FQ + R ML +A  LE AY  +TMP G +GLN    EQYM+FIANRRC
Sbjct: 267 IKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIANRRC 326

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL P+FK  ENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 327 AQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374


>gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp.
           P1]
          Length = 358

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 254/350 (72%), Positives = 298/350 (85%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G   ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ
Sbjct: 9   DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F
Sbjct: 69  ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQY+  SLGLDEGELFN YR+VPSIT K  WAL+YTQ LS P F TGT + D
Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I
Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT+EF  + R MLHEA  LE+AYA +TMP+G +GL A SCEQY++FI +R
Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  QIGL PLF   +NPFPWMSE +DL+KEKNFFETRVTEY+ G  L+WD
Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358


>gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 354

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 257/350 (73%), Positives = 296/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N TGL  I+AG  RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM 
Sbjct: 5   NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+  +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF
Sbjct: 65  ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S  F T +++  
Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI
Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI+ ENP LWT +F+Q+  TML EA  LE+AYA +TMP+G +GLNA  CE+YM FI NR
Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL+ L+    NPFPWMSEV+DL+KEKNFFETRVT+Y+ G  L+WD
Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354


>gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
 gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
          Length = 354

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/353 (73%), Positives = 288/353 (81%), Gaps = 4/353 (1%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            T   PI  G  RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ 
Sbjct: 2   TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61

Query: 64  DLALWK----SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           D+ALW+    +K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR
Sbjct: 62  DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK  WAL+YT+ L+   F TGT 
Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +AD +FL+DL  FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI
Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D INQIK+ENPHLWT  FQ + R ML EA  LE+AY   T+P G +GL A  CEQYM FI
Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +RR  Q+GL PLF  T NPF WMSEV+DLKKEKNFFETRV EYQ G  L WD
Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354


>gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
 gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
          Length = 398

 Score =  544 bits (1402), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/348 (72%), Positives = 287/348 (82%), Gaps = 1/348 (0%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I  G  RV+V  KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 51  TGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQAD 110

Query: 65  LALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           +ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAFE
Sbjct: 111 IALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFE 170

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK  WAL+YT+ L+   F T T    Q
Sbjct: 171 EAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGAQ 230

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVIN
Sbjct: 231 DFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVIN 290

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT++F+ +   ML EA  LEIAYA +TMP G +GLNA  C +Y+ FIANRR
Sbjct: 291 QIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANRR 350

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           C+QIGL  LF    NPFPWMSEVIDLKKEKNFFETRVT+YQ G  L W
Sbjct: 351 CNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398


>gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
 gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
          Length = 412

 Score =  524 bits (1349), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus
           oceani ATCC 19707]
 gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
 gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
           19707]
 gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
          Length = 412

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 415

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 230/347 (66%), Positives = 285/347 (82%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M  D+
Sbjct: 69  GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT  F+Q++  M+ EA  LE  YA++TMP+G +GLNAP  ++Y++FIANRRC 
Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSE++DLKKEKNFFETRVTEYQ G  LKWD
Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415


>gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
 gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
          Length = 458

 Score =  521 bits (1342), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 232/348 (66%), Positives = 283/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  +  G  RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  D
Sbjct: 111 TGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNAD 170

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           LALWK  +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 171 LALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 230

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+
Sbjct: 231 ALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQK 290

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 291 LLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQ 350

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+Q+   M+ EA  LE  YAH+TMP+G +GLNA   E Y+ FIANRRC
Sbjct: 351 IKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRC 410

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 411 AQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458


>gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 408

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 226/349 (64%), Positives = 287/349 (82%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           NTGL  I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL  C NHWMP E+ M  
Sbjct: 60  NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +T+ L+ P F TGT + DQ
Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT  F+++ RTM+ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANRR
Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL  ++   ENPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408


>gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus
           capsulatus str. Bath]
 gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus
           capsulatus str. Bath]
          Length = 403

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 229/348 (65%), Positives = 286/348 (82%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  D
Sbjct: 56  TGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNAD 115

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 116 IALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 175

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+
Sbjct: 176 ALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQK 235

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQ
Sbjct: 236 LLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQ 295

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT  F+ +   M+ EA  +E  YA++TMP+G +GLNAP  ++Y+QFIANRRC
Sbjct: 296 IKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRRC 355

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 356 AQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403


>gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
 gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
          Length = 412

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 288/348 (82%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G +R+ VDDK+++N  +D+NQL+P KY WAW+KYL  C NHWMP E+ M  D
Sbjct: 65  TGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNAD 124

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 125 IALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 184

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY + SLGLDEGE+FNMYREVPS+  KA WAL +T+ L+ P+F TGT +ADQ+
Sbjct: 185 ALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQK 244

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 245 LLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQ 304

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT+EF+ + RT++ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANRRC
Sbjct: 305 IKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANRRC 364

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL  ++   +NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 365 AQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
 gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
          Length = 369

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 227/348 (65%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG   I+ G  R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ M  D
Sbjct: 17  TGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSAD 76

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 77  VALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 136

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L   SF TGT + DQ 
Sbjct: 137 ALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQR 196

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 197 LLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 256

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+++   ++ +   +E  YA +TMP G +G+NA   E+Y+ FIANRR 
Sbjct: 257 IKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIANRRL 316

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 NQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio
           japonicus Ueda107]
 gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus
           Ueda107]
          Length = 429

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 222/347 (63%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 83  GLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 142

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA
Sbjct: 143 ALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 202

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +L +P+FTTGT + DQE 
Sbjct: 203 IHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPETDQEL 262

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 263 LRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 322

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT EFQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+ FIANRRC 
Sbjct: 323 KLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIANRRCA 382

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL+  F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 383 QLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429


>gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
 gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
          Length = 427

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA+W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 381

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  D
Sbjct: 32  TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 91

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 92  VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 151

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ 
Sbjct: 152 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 211

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 212 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 271

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR 
Sbjct: 272 IKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 331

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 332 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379


>gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           longbeachae NSW150]
 gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit
           [Legionella longbeachae NSW150]
          Length = 366

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 223/352 (63%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +   TG   ++ G  R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ 
Sbjct: 13  LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ
Sbjct: 73  MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L+  +F TGT +
Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID
Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWT EF+++   ++ +   LE  YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL   +    NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
           pneumophila str. Corby]
 gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila str. Corby]
 gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b]
          Length = 367

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  D
Sbjct: 18  TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 78  VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ 
Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR 
Sbjct: 258 IKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Lens]
 gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens]
          Length = 367

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  D
Sbjct: 18  TGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 78  VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ 
Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR 
Sbjct: 258 IKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Paris]
 gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris]
          Length = 367

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/348 (64%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  D
Sbjct: 18  TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 78  VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ 
Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR 
Sbjct: 258 IKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
 gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
          Length = 440

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 95  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
 gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
          Length = 440

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 95  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
 gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
          Length = 427

 Score =  504 bits (1297), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus
           degradans 2-40]
 gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 423

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 221/352 (62%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 72  MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT +
Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423


>gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AYE]
 gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
 gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB056]
 gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB058]
 gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB059]
 gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AYE]
 gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 427

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
 gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
          Length = 427

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii SDF]
 gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii]
          Length = 427

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ACICU]
 gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii
           ACICU]
          Length = 427

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
 gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
          Length = 427

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 223/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR +
Sbjct: 322 KIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLN 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
           borkumensis SK2]
 gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis
           SK2]
          Length = 430

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 220/347 (63%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  DL
Sbjct: 84  GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK  +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA
Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT + D+  
Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI
Sbjct: 264 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 323

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW  + + K+  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 324 KLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 383

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 384 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430


>gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ATCC 17978]
 gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2]
 gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 361

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 16  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 76  ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 196 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 255

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 256 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 315

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 316 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361


>gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 370

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 25  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 85  ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 205 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 264

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 265 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 324

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 325 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370


>gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. ADP1]
 gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           sp. ADP1]
          Length = 427

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 221/347 (63%), Positives = 280/347 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  I+ G  RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D
Sbjct: 81  AGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHD 140

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFEE
Sbjct: 141 IALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEE 200

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YTQ+LS P F TGT + DQ+
Sbjct: 201 AIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQQ 260

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID+INQ
Sbjct: 261 LLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGIDMINQ 320

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EFQQ+   M+ E TLLEI YA +TMP+G +G+NA   E+Y++FI NRR 
Sbjct: 321 IKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRL 380

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            Q+GL   ++   NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 381 AQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
          Length = 370

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 278/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL   + G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL    NHWMP E+PM  D
Sbjct: 23  TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 83  IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SL +DEGE+FNMYREVPS+  KA WAL +T++L  P F TGT  ADQ 
Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK ENPHLWT EFQ  ++  + E+  LE+ YA +T+P+G +GLNA   E+Y++FI NRR 
Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   ENP PWMSE++DLKKEKNFFETRVTEY+ G  L W+
Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370


>gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
          Length = 427

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 420

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 220/348 (63%), Positives = 284/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV M  D
Sbjct: 73  AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 132

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE
Sbjct: 133 IALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 192

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT + DQE
Sbjct: 193 AIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 252

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQ
Sbjct: 253 LLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQ 312

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI NRR 
Sbjct: 313 IKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRL 372

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL+  +   ENPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 373 AQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420


>gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 415

 Score =  501 bits (1289), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 219/348 (62%), Positives = 283/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV M  D
Sbjct: 68  AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 127

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE
Sbjct: 128 IALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 187

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT + DQE
Sbjct: 188 AIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 247

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQ
Sbjct: 248 LLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQ 307

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI NRR 
Sbjct: 308 IKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRL 367

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL+  F   +NPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 368 AQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415


>gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 427

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 223/346 (64%), Positives = 279/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT  FQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
 gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
          Length = 355

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 277/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  DL
Sbjct: 9   GVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 68

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK  +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA
Sbjct: 69  ALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 128

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT + D+  
Sbjct: 129 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKAL 188

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI
Sbjct: 189 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 248

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW  + + K+  M+ E   LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 249 KLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 308

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 309 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355


>gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
 gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
          Length = 427

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
 gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
          Length = 421

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 280/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  R+ VDDK+M+N R+D+NQL+P KY WAW+KYL  C+NHWMP E+ M  D+
Sbjct: 75  GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK  NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA
Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY + SLG+DE E+FNMYREVPSI  KA W++++TQ +S+P+F TGT +ADQE 
Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQI
Sbjct: 255 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDIINQI 314

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT EF+Q+   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI NRR  
Sbjct: 315 KLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFICNRRLA 374

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 375 QLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421


>gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri DSM 4166]
          Length = 415

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 281/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY EVPS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
 gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
          Length = 427

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 222/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FIANRR  
Sbjct: 322 KIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter
           turnerae T7901]
 gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae
           T7901]
          Length = 453

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 218/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA
Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P F TGT +ADQE 
Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 288 LRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 347

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA   E+Y+ FIANRR  
Sbjct: 348 KLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIANRRLA 407

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL+  +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W
Sbjct: 408 QLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453


>gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
 gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
          Length = 427

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuG_Q212]
 gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuG_Q212]
          Length = 401

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 222/348 (63%), Positives = 279/348 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  D
Sbjct: 53  TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE
Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ 
Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRRC
Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuK_Q154]
 gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuK_Q154]
          Length = 401

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 222/348 (63%), Positives = 279/348 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  D
Sbjct: 53  TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE
Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ 
Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRRC
Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 493]
 gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii Dugway 5J108-111]
 gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 331]
 gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           RSA 493]
 gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 331]
          Length = 401

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 222/348 (63%), Positives = 279/348 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  D
Sbjct: 53  TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE
Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ 
Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRRC
Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri A1501]
 gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501]
          Length = 415

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 217/347 (62%), Positives = 281/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 415

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
 gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 425

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 218/348 (62%), Positives = 282/348 (81%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  ++ G  RV+VD+K M+N R+D+NQL+PLKY WAW+KYL  C NHWMP E+ M  D
Sbjct: 78  AGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEINMTAD 137

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE
Sbjct: 138 VATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 197

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++ DQE
Sbjct: 198 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQETDQE 257

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 258 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 317

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENP+LWT+ FQQ+   M+ E T +EI YA +TMP+G +G+NA   E+Y+ FIANRR 
Sbjct: 318 IKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIANRRL 377

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 378 SQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425


>gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf-5]
 gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Pseudomonas fluorescens Pf-5]
          Length = 415

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 416

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
 gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
          Length = 441

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 219/348 (62%), Positives = 279/348 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D
Sbjct: 94  AGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTAD 153

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +A WK+  GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE
Sbjct: 154 VATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEE 213

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W+L +T  LS P+F TGT ++DQ 
Sbjct: 214 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQT 273

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 274 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 333

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR 
Sbjct: 334 IKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRL 393

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 394 SQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441


>gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf0-1]
 gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 416

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 275/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida F1]
 gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1]
          Length = 415

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain
           [Pseudomonas fluorescens SBW25]
          Length = 416

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato K40]
 gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 415

 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 274/347 (78%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae B728a]
 gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
 gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 415

 Score =  494 bits (1272), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 275/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 415

 Score =  494 bits (1272), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 274/347 (78%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 419

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 221/347 (63%), Positives = 279/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 73  GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK  +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA
Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L  T +LS P+F TGT + DQE 
Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 253 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 312

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENP LWT EFQQ++  M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI NRR +
Sbjct: 313 KLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 372

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 373 QVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419


>gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAO1]
 gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2]
 gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PA7]
 gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa LESB58]
 gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAb1]
 gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa PAO1]
 gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7]
 gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa]
 gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
 gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 415

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida W619]
 gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619]
          Length = 416

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens SBW25]
          Length = 416

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida KT2440]
 gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida GB-1]
 gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
 gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1]
 gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1]
          Length = 416

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
 gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
          Length = 416

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina ymp]
 gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp]
          Length = 416

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQF 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 415

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C+NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           entomophila L48]
 gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           entomophila L48]
          Length = 415

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 275/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 388

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 218/355 (61%), Positives = 283/355 (79%), Gaps = 8/355 (2%)

Query: 6   GLSPIQAGEK--------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
           G   I AGE+        RV V  K+M+NAR+DVNQL+P KY WAW+KYL  C+NHWMP 
Sbjct: 34  GEMDIGAGERELEEGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQ 93

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV M  D+ALWK  NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+
Sbjct: 94  EVNMSADIALWKDPNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYI 153

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           LRQAFEEA+H+H +QY + SLGLD+GE+FNMY+EVPS+  KA W++++   ++ P+F TG
Sbjct: 154 LRQAFEEAIHTHAYQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTG 213

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
           T +AD  FL++L  +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNF
Sbjct: 214 TVEADTTFLKNLIAYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNF 273

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           GID+INQIKIENPHLWT E ++++  M+ + T LEIAYA +TMP+G +G+NA   E+Y+Q
Sbjct: 274 GIDMINQIKIENPHLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQ 333

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           FIANRR  QIGL  ++   +NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 334 FIANRRLTQIGLPEVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388


>gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae 642]
 gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 415

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 275/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
 gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
          Length = 416

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 277/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT + D++F
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQF 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter
           vinelandii DJ]
 gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter
           vinelandii DJ]
          Length = 416

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP E+ M  D+
Sbjct: 70  GLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++ 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
 gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
          Length = 444

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 214/347 (61%), Positives = 279/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  ++ G  RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 98  GIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 157

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           +LWK  +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA
Sbjct: 158 SLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 217

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT + DQE 
Sbjct: 218 IHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTETDQEL 277

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 278 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDIINQI 337

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT+EF+ +   M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI+NRR  
Sbjct: 338 KLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFISNRRLA 397

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 398 QLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444


>gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 422

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 281/348 (80%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            GL  ++ G  R+ V+DK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D
Sbjct: 75  AGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTAD 134

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFEE
Sbjct: 135 VALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFEE 194

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY + SL +DEGE+FNMYRE+PSI  KA W+L++T +LS P+F TGT + DQE
Sbjct: 195 AIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQE 254

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 255 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 314

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENP LW+++FQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+QFI+NRR 
Sbjct: 315 IKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFISNRRL 374

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +Q+GL   ++  +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 375 NQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422


>gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
 gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
          Length = 362

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 277/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M  D
Sbjct: 14  TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALW+   GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 74  IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SLG+DE  +FNMYRE+P++  K  WAL +TQ+L+ P+F TGT + DQ 
Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT EF++    ++ E   LE  YA +T+P+G +GLNA     Y++FI NRR 
Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   +    NP PWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361


>gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1710b]
 gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
 gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei 1710b]
 gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
          Length = 376

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 32  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 91

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 92  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 151

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 152 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 211

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 212 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 271

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 272 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 331

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 332 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376


>gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
 gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
          Length = 421

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 215/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 75  GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA
Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEG +FNMYREVPS+  KA W+L +T +LS P+F TGT + DQ+ 
Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 255 LRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 314

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT EFQ++   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI NRR +
Sbjct: 315 KLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 374

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 375 QLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421


>gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 9]
 gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei BCC215]
 gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
 gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
          Length = 372

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 28  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 87

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 88  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 147

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 148 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 207

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 208 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 267

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 268 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 327

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 328 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei SAVP1]
 gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10229]
 gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 668]
 gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10247]
 gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1106a]
 gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei DM98]
 gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 14]
 gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 91]
 gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei B7210]
 gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 7894]
 gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 112]
 gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei SAVP1]
 gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 668]
 gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
          Length = 403

 Score =  491 bits (1264), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 59  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 118

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 119 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 178

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 179 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 238

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 239 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 298

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 299 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 358

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 359 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei ATCC 23344]
 gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei K96243]
 gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 23344]
          Length = 350

 Score =  491 bits (1263), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 222/352 (63%), Positives = 274/352 (77%), Gaps = 2/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA N   S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 1   MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 59  MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +
Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
 gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
          Length = 469

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 216/347 (62%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK+  GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA
Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +T  LS P+F TGT ++DQ  
Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTL 302

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 303 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 362

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENP LWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 363 KLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLS 422

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 423 QIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469


>gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           TJI49]
          Length = 403

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 272/352 (77%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A      P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +
Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 232 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 291

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 292 LINQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIS 351

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 352 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC
           17616]
          Length = 396

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 53  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396


>gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
 gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           multivorans ATCC 17616]
 gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
          Length = 403

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
 gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
          Length = 403

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
 gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           thailandensis E264]
          Length = 377

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 218/345 (63%), Positives = 270/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 33  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 93  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+
Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 212

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377


>gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
 gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
          Length = 372

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 29  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 89  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           europaea ATCC 19718]
 gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718]
          Length = 382

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 216/338 (63%), Positives = 271/338 (80%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  NGL
Sbjct: 45  RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 104

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QYI
Sbjct: 105 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 164

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FN Y E+ SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 165 VESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFAC 224

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLWT
Sbjct: 225 IMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWT 284

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PLF 
Sbjct: 285 REFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFP 344

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              NPFPWMSE+IDLKKEKNFFETRV EYQ G  L WD
Sbjct: 345 EAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382


>gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira
           multiformis ATCC 25196]
 gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 408

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 217/338 (64%), Positives = 272/338 (80%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M  D+ALWK  NGL
Sbjct: 71  RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNGL 130

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QYI
Sbjct: 131 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQYI 190

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EV SI  K  + + +  TL+ PSF TGT +ADQ+ L+ L VF  
Sbjct: 191 VESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFAC 250

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLWT
Sbjct: 251 IMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLWT 310

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           KEF+ +   ++ +A  LE  YA +TMP+G +GLNAP  ++Y+++IANRRC QIGL+ L+ 
Sbjct: 311 KEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILYP 370

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 371 GASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408


>gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           rhizoxinica HKI 454]
 gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1)
           [Burkholderia rhizoxinica HKI 454]
          Length = 416

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 220/345 (63%), Positives = 268/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           SP  A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 72  SPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 131

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 132 WKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 191

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ PSF TGT +ADQ+ L+
Sbjct: 192 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLK 251

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 252 SLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 311

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT  F+++   +   A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QI
Sbjct: 312 ENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICNRRCQQI 371

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 372 GLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           eutropha C91]
 gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91]
          Length = 377

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 215/338 (63%), Positives = 272/338 (80%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  NGL
Sbjct: 40  RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 99

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QYI
Sbjct: 100 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 159

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FN Y E+ SI  K  + + +  TL++P+F TGT + DQ+ L+ L VF  
Sbjct: 160 VESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFAC 219

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLWT
Sbjct: 220 IMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWT 279

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PLF 
Sbjct: 280 REFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFP 339

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 340 EAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377


>gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis TXDOH]
 gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis Bt4]
 gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
          Length = 350

 Score =  488 bits (1256), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 221/352 (62%), Positives = 273/352 (77%), Gaps = 2/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA N   S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 1   MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 59  MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +
Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 415

 Score =  488 bits (1255), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 212/347 (61%), Positives = 274/347 (78%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV    D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia J2315]
 gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           cenocepacia J2315]
          Length = 403

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 216/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
 gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
          Length = 432

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP E+ M  D+
Sbjct: 86  GLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEINMTADV 145

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA
Sbjct: 146 ATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 205

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +LS P+F TGT + DQ  
Sbjct: 206 IHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTENDQTL 265

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 266 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 325

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT++FQ++   ML E T +EI YA +TMP+G +G+NA   E+Y+QFI NRR  
Sbjct: 326 KLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLA 385

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 386 QLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432


>gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
 gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
          Length = 403

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
 gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
          Length = 411

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+            RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
 gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
          Length = 411

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+            RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria AMMD]
 gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria MC40-6]
 gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD]
 gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           MC40-6]
          Length = 403

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           383]
 gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 403

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
 gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
          Length = 403

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
 gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
          Length = 411

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/358 (61%), Positives = 271/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+  G       E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT + DQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411


>gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis EO147]
          Length = 369

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 269/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 25  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 85  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia MC0-3]
 gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           MC0-3]
          Length = 403

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 412

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 213/337 (63%), Positives = 270/337 (80%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV VDDK M+N R+D+NQL+P KY WAW+KYL    NHWMP EV M  D+ALWKS +GLT
Sbjct: 76  RVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVNMTADIALWKSNDGLT 135

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ FEEA+H+H +QY I
Sbjct: 136 EDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQGFEEAIHTHAYQYCI 195

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLG+DEG +FNMYRE+PS+  KA+W L+YT+ +S P FTTGT + D+  L++L  FY V
Sbjct: 196 ESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDETDKLLLKNLIAFYCV 255

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQIK+ENPHLW +
Sbjct: 256 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKLENPHLWDE 315

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           + + ++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR  QIGLE  F+ 
Sbjct: 316 QMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIANRRLVQIGLEEEFEG 375

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 376 ASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412


>gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia AU 1054]
 gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia HI2424]
 gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU
           1054]
 gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           HI2424]
          Length = 382

 Score =  484 bits (1247), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 39  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 99  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382


>gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           vietnamiensis G4]
 gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis
           G4]
          Length = 403

 Score =  484 bits (1246), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 268/344 (77%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis C6786]
          Length = 369

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 268/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 25  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 85  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT  ADQ+ L+
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
 gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
          Length = 414

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 216/341 (63%), Positives = 265/341 (77%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
             E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  
Sbjct: 74  VSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDP 133

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 134 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 193

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F TGT +ADQ  L+ L V
Sbjct: 194 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIV 253

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP 
Sbjct: 254 FACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 313

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+P
Sbjct: 314 LWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 373

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 374 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           glumae BGR1]
 gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           glumae BGR1]
          Length = 407

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 212/339 (62%), Positives = 268/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +++RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT+DADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRRC QIGL+PL+
Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
 gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
          Length = 415

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 216/349 (61%), Positives = 265/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N         E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  
Sbjct: 67  NAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSR 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 127 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ
Sbjct: 187 EAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQ 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN
Sbjct: 247 TLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRR
Sbjct: 307 QIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 367 CQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415


>gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phytofirmans PsJN]
 gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans
           PsJN]
          Length = 415

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/362 (60%), Positives = 271/362 (74%), Gaps = 11/362 (3%)

Query: 2   ANNTGLSPIQ-----------AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC 50
           AN+  ++P+              E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C
Sbjct: 54  ANDMAVAPVAHVTHAAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGC 113

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            NHWMP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ 
Sbjct: 114 ANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITA 173

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + Y   L+
Sbjct: 174 PECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLT 233

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
            P+F TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RD
Sbjct: 234 DPAFKTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRD 293

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES+H NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA 
Sbjct: 294 ESMHCNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNAS 353

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L 
Sbjct: 354 MFKSYLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALT 413

Query: 351 WD 352
           W+
Sbjct: 414 WE 415


>gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
 gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
          Length = 365

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M  D+ALWKS + L+
Sbjct: 30  RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           DDER +IKRNLGFF +++SL ANNIVL  YRH++NPECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 89  DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FNMY EVPSI  K  + L Y   L++P F TGT +ADQ  L+ L VF  +
Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT 
Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+++ R ++ +   LE AYA +TMP+G +GLNA   ++Y++FIANRRC QIG++ L++ 
Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE+IDLKKEKNFFE+RVTEYQ G  L WD
Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365


>gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           xenovorans LB400]
 gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 411

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/362 (60%), Positives = 271/362 (74%), Gaps = 11/362 (3%)

Query: 2   ANNTGLSPIQ-----------AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC 50
           AN+  ++P+              E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C
Sbjct: 50  ANDIAVAPVAHVTHAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGC 109

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            NHWMP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ 
Sbjct: 110 ANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITA 169

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + Y   L+
Sbjct: 170 PECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLT 229

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
            P+F TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RD
Sbjct: 230 DPAFKTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRD 289

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES+H NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA 
Sbjct: 290 ESMHCNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNAS 349

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L 
Sbjct: 350 MFKSYLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALT 409

Query: 351 WD 352
           W+
Sbjct: 410 WE 411


>gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
 gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
          Length = 414

 Score =  481 bits (1238), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 215/339 (63%), Positives = 263/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 76  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F TGT + DQ  L+ L VF 
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
          Length = 382

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 211/337 (62%), Positives = 268/337 (79%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK+ NGLT
Sbjct: 46  RIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWKNPNGLT 105

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           DDER ++KRNLGFF +++SL ANNI L  YRH++NPECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 106 DDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 165

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FNMY EV SI  K  + L +   L++P F TGT + DQ+ L+ L VF  +
Sbjct: 166 ESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSLIVFACI 225

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+ENPHLWT 
Sbjct: 226 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLENPHLWTP 285

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+++ R ++ +   LE  YA +TMP+G +GLNA   ++Y++FIANRRC QIG++ L++ 
Sbjct: 286 AFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGVDMLYQG 345

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 346 ATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382


>gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
 gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
          Length = 376

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 213/344 (61%), Positives = 268/344 (77%), Gaps = 2/344 (0%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P  +G  RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M  D+A W
Sbjct: 35  PSHSG--RVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQW 92

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K    L+DDERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQ FEEA+H+
Sbjct: 93  KDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQGFEEAIHT 152

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + +  TL+ P+F TGT +ADQE L+ 
Sbjct: 153 HAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAEADQELLRS 212

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+E
Sbjct: 213 LIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLE 272

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+++ +T++ +   LE  YA  TMP+G +GLNA   ++Y++FIANRRC QIG
Sbjct: 273 NPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIANRRCTQIG 332

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+ L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 333 LDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ubonensis Bu]
          Length = 403

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 213/337 (63%), Positives = 266/337 (78%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 67  RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF  +
Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT 
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+  
Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phymatum STM815]
 gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815]
          Length = 407

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 215/340 (63%), Positives = 265/340 (77%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+ALWK  N
Sbjct: 68  SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPN 127

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 128 GLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 187

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 188 YIVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVF 247

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHL
Sbjct: 248 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHL 307

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG++PL
Sbjct: 308 WTPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPL 367

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 368 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis Tohama I]
 gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           parapertussis 12822]
 gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           bronchiseptica RB50]
 gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           pertussis Tohama I]
 gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           parapertussis]
 gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           bronchiseptica RB50]
 gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis CS]
          Length = 398

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 215/351 (61%), Positives = 271/351 (77%), Gaps = 2/351 (0%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A + G S   AG  RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 50  AASLGASDATAG--RVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 107

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 108 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 167

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +A
Sbjct: 168 FEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEA 227

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+
Sbjct: 228 DQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDL 287

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           IN IK+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIAN
Sbjct: 288 INTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIAN 347

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIG+EPLF   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 348 RRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 345

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 272/337 (80%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   GLT
Sbjct: 8   RVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPKGLT 67

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 68  EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 127

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FNMY EVPS+ AK  + + + +TL+ P F TGT++ DQ+ L+ L VF  +
Sbjct: 128 ESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVFATI 187

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT+
Sbjct: 188 MEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTE 247

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            FQQ+   ++ +   LE AYA +TMP+G +GLNAP  ++Y+++I NRR  QIGL+P ++ 
Sbjct: 248 GFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQWEN 307

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +NPFPWMSE++DLKKEKNFFE+RVT+YQ G  L WD
Sbjct: 308 VQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344


>gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
 gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
          Length = 407

 Score =  478 bits (1230), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 213/349 (61%), Positives = 270/349 (77%), Gaps = 4/349 (1%)

Query: 8   SPIQAG----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +P QA     ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 59  APAQASAAGSQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 118

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 119 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 178

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI  K  + + +  TL+ P+F TGT +ADQ
Sbjct: 179 EAIHTHAYQYIVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQ 238

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN
Sbjct: 239 KLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 298

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRR
Sbjct: 299 QIKLENPHLWTPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRR 358

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ L+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 359 CQQIGLDALYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           [Ralstonia solanacearum CFBP2957]
 gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CFBP2957]
          Length = 402

 Score =  478 bits (1229), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 217/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 171 AFEEAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 350

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 351 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           petrii DSM 12804]
 gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii]
          Length = 396

 Score =  477 bits (1228), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 268/341 (78%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ 
Sbjct: 56  AAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 115

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 116 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 175

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SL LDE E+FN Y EVPSI AK  + + + + ++ P+F TGT ++DQ+ L+ L V
Sbjct: 176 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLIV 235

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPH
Sbjct: 236 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPH 295

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EP
Sbjct: 296 LWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEP 355

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 356 LYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396


>gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans C54]
          Length = 399

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 267/341 (78%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A  +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ 
Sbjct: 59  ATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 118

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 119 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L V
Sbjct: 179 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIV 238

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPH
Sbjct: 239 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPH 298

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EP
Sbjct: 299 LWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEP 358

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 359 LYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
 gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
          Length = 381

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 211/346 (60%), Positives = 270/346 (78%), Gaps = 2/346 (0%)

Query: 9   PIQAGE--KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           P  AG   +R+ V+DK+++N  +DVNQL+P KY WAW+KYL AC NHWMP E+ M  D+A
Sbjct: 36  PAVAGSANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIA 95

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           LW+  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+
Sbjct: 96  LWRDPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAI 155

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+H +QYI+ SLGLDEGE+FN Y EV SI  K  + + +  TL++P F TGT + DQ+ L
Sbjct: 156 HTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLL 215

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK
Sbjct: 216 RSLIVFACIMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVINQIK 275

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +ENP LWTK F+++   ++ +A  LE  YA +TMP+G +G+NAP  ++Y+++IANRRC Q
Sbjct: 276 MENPQLWTKAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQ 335

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           IGL+ L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 336 IGLDTLYPNANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
 gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
          Length = 402

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 350

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 351 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
          Length = 410

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 60  LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 118

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 119 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 178

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 179 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 238

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 239 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 298

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 299 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 358

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 359 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410


>gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium
           197N]
 gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium
           197N]
          Length = 394

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 266/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NGL
Sbjct: 57  QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 117 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 176

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF  
Sbjct: 177 VESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 236

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 237 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWT 296

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+ 
Sbjct: 297 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 356

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 357 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394


>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta
           [Janthinobacterium sp. Marseille]
 gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium
           sp. Marseille]
          Length = 392

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 210/338 (62%), Positives = 269/338 (79%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NGL
Sbjct: 55  RRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGL 114

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 115 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 174

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EV SI  K  + + + +TL+ P F TGT + DQ+ L+ L VF  
Sbjct: 175 VESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFAC 234

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 235 LMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLWT 294

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            +F+++ +T+   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+F+
Sbjct: 295 PQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFE 354

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 355 QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392


>gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
 gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
          Length = 399

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 208/338 (61%), Positives = 266/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NGL
Sbjct: 62  QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF  
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+ 
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter
           hongkongensis HLHK9]
 gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter
           hongkongensis HLHK9]
          Length = 357

 Score =  474 bits (1221), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/349 (62%), Positives = 267/349 (76%), Gaps = 1/349 (0%)

Query: 5   TGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             +SP  +G   RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ 
Sbjct: 9   VAVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQR 68

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ LWK  NGLTDDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 69  DIELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 128

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK  + + +  TL  P+F TGT ++DQ
Sbjct: 129 EAIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQ 188

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN
Sbjct: 189 LLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 248

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            IK ENPHLWT EFQ++   +  +A  LE AYA +TMP+G +GLNA   ++Y+ FIANRR
Sbjct: 249 SIKQENPHLWTVEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRR 308

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGLEPLF + +NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 309 MQQIGLEPLFTHVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357


>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas
           arsenicoxydans]
 gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Herminiimonas arsenicoxydans]
          Length = 395

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/360 (59%), Positives = 274/360 (76%), Gaps = 9/360 (2%)

Query: 2   ANNTGLSP-IQAGE--------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
           A +  L P + AG+        +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C N
Sbjct: 36  AQDVALDPAVMAGKPAATVDPTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCAN 95

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           HWMP E+ MQ D+ LWK+ NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PE
Sbjct: 96  HWMPQEINMQRDIELWKNPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPE 155

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
           CRQYLLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y E+ SI  K  + + +   L+ P
Sbjct: 156 CRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDP 215

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
           +FTTGT + DQ  L+ L VF  + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES
Sbjct: 216 NFTTGTTENDQTLLRSLIVFACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDES 275

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           +H NFGID+IN IK+ENPHLWT +F+ + + +   A  LE  YA +TMP+G +GLNAP  
Sbjct: 276 MHCNFGIDLINTIKLENPHLWTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMF 335

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + Y++FIANRR  QIGLEP+F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 336 KGYLRFIANRRAQQIGLEPMFEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395


>gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
 gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
          Length = 387

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 212/356 (59%), Positives = 268/356 (75%), Gaps = 7/356 (1%)

Query: 4   NTGLSPIQA-------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
           N  ++P  A       G  RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP
Sbjct: 32  NDAMAPTPAAAGSTADGSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMP 91

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ M  D++LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+
Sbjct: 92  QEINMSRDISLWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQF 151

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           LLRQAFEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P F T
Sbjct: 152 LLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQT 211

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           GT +ADQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H N
Sbjct: 212 GTPEADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCN 271

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           FGID+IN IK+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNA   + Y+
Sbjct: 272 FGIDLINTIKLENPHLWTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYL 331

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +FIANRRC QIGLEPLF   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 332 RFIANRRCQQIGLEPLFGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387


>gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
 gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
          Length = 398

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 207/338 (61%), Positives = 264/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NGL
Sbjct: 61  QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF  
Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT
Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 300

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+ 
Sbjct: 301 PAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 360

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 361 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Cupriavidus taiwanensis LMG 19424]
          Length = 396

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 46  LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 104

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 105 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 164

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 165 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 224

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 225 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 284

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 285 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 344

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 345 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           metallidurans CH34]
 gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 395

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 214/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 45  LGNNPNAAAAQS-TRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 103

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 104 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 163

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 164 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 223

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 224 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 283

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 284 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 343

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 344 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score =  471 bits (1212), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/358 (59%), Positives = 272/358 (75%), Gaps = 8/358 (2%)

Query: 3   NNTGLSP-IQAGE-------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           +N  L+P + AG        +RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHW
Sbjct: 31  SNAALNPALMAGNSEQVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHW 90

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP E+ MQ D+ LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 91  MPQEINMQRDIELWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 150

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           QYLLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + +  TL+ P F
Sbjct: 151 QYLLRQAFEEAIHTHAYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEF 210

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT + DQ+ L+ L VF  + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H
Sbjct: 211 KTGTMENDQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMH 270

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+IN +K+ENPHLWT EF+++ +++   A  LE  YA +TMP+G +GLNAP  + 
Sbjct: 271 CNFGIDLINTVKMENPHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKS 330

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FIANRR  QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 331 YLRFIANRRAQQIGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388


>gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha H16]
 gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia
           eutropha H16]
          Length = 395

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 211/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 58  RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 117

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 118 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 177

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 178 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 237

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 238 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 297

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 298 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 357

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha JMP134]
 gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 394

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 265/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 44  LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 102

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 103 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 162

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 163 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 222

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 223 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 282

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 283 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 342

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 343 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394


>gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CMR15]
          Length = 398

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 48  LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 106

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 107 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 166

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 167 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 226

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 227 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 286

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 287 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 346

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 347 NRRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398


>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 416

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 211/338 (62%), Positives = 262/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R+N  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWKS NGL
Sbjct: 79  RRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKSPNGL 138

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 139 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 198

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
             SLGLDE E+FN Y EV SI  K  + + +   L+ P FTTGT   DQ+ L+ L VF  
Sbjct: 199 TESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSLIVFSC 258

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+ENPHLWT
Sbjct: 259 LMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKMENPHLWT 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+F+
Sbjct: 319 PEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFE 378

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 379 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           solanacearum GMI1000]
 gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain)
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 400

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 50  LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 109 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 168

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 169 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 228

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 229 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 288

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 289 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 348

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 349 NRRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400


>gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
 gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
          Length = 377

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 211/349 (60%), Positives = 265/349 (75%), Gaps = 4/349 (1%)

Query: 8   SPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +P+ A +     RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M  
Sbjct: 29  TPVAANQPSISGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSR 88

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+A WK    LTDDERL++KRNLGFF +++SL ANNIVL  YRH++ PE RQYLLRQ FE
Sbjct: 89  DIAQWKDSTALTDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFE 148

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDE E+FN Y+EV SI  K ++ + +  TL++P F TGT +ADQ
Sbjct: 149 EAIHTHAYQYIVESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQ 208

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN
Sbjct: 209 QLLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVIN 268

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            IK+ENPHLWT EF+ + + ++     LE  YA  TMP+G +GLNA   ++Y++FIANRR
Sbjct: 269 TIKLENPHLWTAEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRR 328

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ L++   NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 329 CQQIGLDVLYQGATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377


>gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
 gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
          Length = 402

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 350

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 351 NRRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 374

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 267/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPSI AK  + L + +TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQ++  +++ +   LE AYA +TMP+G +GLNAP  + Y+++I NRR  Q+GL   + 
Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374


>gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax
           ferrireducens T118]
 gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 400

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 267/351 (76%), Gaps = 1/351 (0%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           AN  G + +    +RVN  DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M
Sbjct: 51  ANQRG-AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNM 109

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 110 TRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +A
Sbjct: 170 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEA 229

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 230 DQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 289

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENP LWT EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 290 INQLKLENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 349

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 350 RRATQIGLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400


>gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 394

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 210/354 (59%), Positives = 268/354 (75%), Gaps = 6/354 (1%)

Query: 5   TGLSPIQAGEK------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58
           T  +P++A         RVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E
Sbjct: 41  TAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQE 100

Query: 59  VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           + M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLL
Sbjct: 101 INMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLL 160

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           RQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F TGT
Sbjct: 161 RQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGT 220

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            + DQ  L+ L VF  V EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFG
Sbjct: 221 LETDQTLLRSLIVFACVMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFG 280

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           ID+INQIK+ENP LWT  F+ + +++  +A  LE  YA +TMP+G +GLNAP  + Y+++
Sbjct: 281 IDLINQIKLENPQLWTSAFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRY 340

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           I NRRC QIGL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 341 ICNRRCLQIGLDAMFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12J]
 gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J]
          Length = 402

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 212/352 (60%), Positives = 265/352 (75%), Gaps = 1/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + NN   +  Q+  +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQ
Sbjct: 111 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT +
Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID
Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI 
Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 350

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 351 NRRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12D]
 gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 402

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 210/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris
           marina MBIC11017]
 gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris
           marina MBIC11017]
          Length = 384

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 205/338 (60%), Positives = 263/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+ALWK+ +GL
Sbjct: 47  RRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALWKTTDGL 106

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 107 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 166

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN YREV  I  K  + + + +TL+ P+F TGT + DQ+ L+ L  F  
Sbjct: 167 VESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKSLIAFSC 226

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK ENPHLWT
Sbjct: 227 LMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQENPHLWT 286

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF ++ R +   A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGL+P+F 
Sbjct: 287 PEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIGLDPIFA 346

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE++DLKKE+NFFETRV EYQ G  L WD
Sbjct: 347 SEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384


>gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
 gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
          Length = 385

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/353 (59%), Positives = 265/353 (75%), Gaps = 5/353 (1%)

Query: 5   TGLSPIQ-----AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           T  SP+      A  +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV
Sbjct: 33  TNASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEV 92

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLR
Sbjct: 93  NMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLR 152

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I  K  + + +   +  P+F+TGT 
Sbjct: 153 QAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTP 212

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +ADQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGI
Sbjct: 213 EADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGI 272

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D+INQIK+ENP LWT  F+ + R +   A  LE  YA +TMP+G +G+NA   + Y+++I
Sbjct: 273 DLINQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYI 332

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ANRR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV +YQ G  L WD
Sbjct: 333 ANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385


>gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia
           acidovorans SPH-1]
 gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1]
          Length = 363

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 210/338 (62%), Positives = 262/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 26  KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 86  TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EVPSI  K  + + + + +  P+F TGT + DQ  L+ L VF  
Sbjct: 146 VESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFAC 205

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWT 265

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+++   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 266 PEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 325

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 326 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
 gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
          Length = 363

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 261/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 26  KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 86  TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + DQ  L+ L VF  
Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 265

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 266 AEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFP 325

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 326 GEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
 gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
          Length = 363

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 26  KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 86  TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + DQ  L+ L VF  
Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 265

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+Q+   +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 266 AEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFP 325

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 326 GEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
 gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
          Length = 398

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/338 (61%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 61  RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 121 TDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +ADQ  L+ L VF  
Sbjct: 181 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFAC 240

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 300

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 301 AEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFP 360

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 361 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398


>gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
           JS42]
 gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           ebreus TPSY]
 gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42]
 gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY]
          Length = 396

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 207/338 (61%), Positives = 262/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 59  RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 118

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EV SI  K  + + + + +  P FTTGT ++DQ  L+ L VF  
Sbjct: 179 VESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFAC 238

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 239 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 298

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 299 AEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 358

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396


>gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp.
           JS666]
 gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 406

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 70  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI 
Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EV SI  K  + + + + +S P F TGT +ADQ  L+ L VF  +
Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT 
Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF  
Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406


>gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 387

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 207/341 (60%), Positives = 261/341 (76%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A  +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  
Sbjct: 47  AQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 106

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 107 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 166

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L V
Sbjct: 167 QYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIV 226

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPH
Sbjct: 227 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 286

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE 
Sbjct: 287 LWTAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 346

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 347 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
          Length = 410

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/345 (60%), Positives = 264/345 (76%), Gaps = 4/345 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP EV M  D+A+WK  
Sbjct: 66  ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDP 125

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +
Sbjct: 126 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 185

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQ 187
           QYI+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L+
Sbjct: 186 QYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 245

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+
Sbjct: 246 SIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKL 305

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  QI
Sbjct: 306 ENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQI 365

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 366 GLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410


>gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas
           naphthalenivorans CJ2]
 gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans
           CJ2]
          Length = 387

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 209/343 (60%), Positives = 260/343 (75%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I A  KRV   DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M  D+ALWK
Sbjct: 45  IPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALWK 104

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             NGL+DDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 105 DPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTH 164

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +QYI  SLGLDEGE+FN Y EV SI  K  + + + + +S P F TGT ++DQ  L+ L
Sbjct: 165 AYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKSL 224

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+EN
Sbjct: 225 IVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLEN 284

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P LWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGL
Sbjct: 285 PQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGL 344

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           E LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 345 ETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
 gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
          Length = 402

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 207/345 (60%), Positives = 264/345 (76%), Gaps = 4/345 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP E+ M  D+A+WK  
Sbjct: 58  ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDP 117

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +
Sbjct: 118 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 177

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQ 187
           QYI+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L+
Sbjct: 178 QYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 237

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+
Sbjct: 238 SIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKL 297

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  QI
Sbjct: 298 ENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQI 357

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 358 GLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402


>gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 394

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 260/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 58  RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F TGT +ADQ  L+ L VF  V
Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW  
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+ + +++  +A  LE  YA +TMP+G +GLNAP  +  +++I NRRC QIGL+ +F  
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 376

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 204/337 (60%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK    LT
Sbjct: 40  RVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTALT 99

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 100 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 159

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y E+ SI  K ++ + +  TL++P F TGT + DQ+ L+ L VF  +
Sbjct: 160 ESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFACI 219

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLWT 
Sbjct: 220 MEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLWTS 279

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + RT++ +   LE  YA +TMP+G +GLN+   ++Y++FI+NRRC QIGL+ +F  
Sbjct: 280 EFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMFPG 339

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 340 VSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax
           paradoxus S110]
 gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110]
          Length = 391

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 206/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 55  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EVPSI  K  + + +   +S P+F TGT + DQ  L+ L VF  +
Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT 
Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF  
Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391


>gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
 gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
          Length = 383

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 203/337 (60%), Positives = 262/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  + LT
Sbjct: 47  RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 106

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 107 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L VF  +
Sbjct: 167 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 226

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLWT 
Sbjct: 227 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 286

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ L+  
Sbjct: 287 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 346

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 347 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383


>gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           citrulli AAC00-1]
 gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1]
          Length = 387

 Score =  461 bits (1185), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 206/338 (60%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 50  RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 109

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 110 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 169

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L VF  
Sbjct: 170 VESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFAC 229

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 230 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 289

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 290 AEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 349

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 350 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
 gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
          Length = 347

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           G +R+ V+DKR++N    DVNQL+P+KY WAWE YL+ C NHWMP+E+PM  D+ LW+S 
Sbjct: 8   GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F
Sbjct: 67  DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            YI+ SLGLDEGE+FNMYRE+P++  K  + ++ T+ +  P FTT T +  Q FL++L  
Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           +YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP 
Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EFQ++ + ++ EA  LE+AYA++ +P+G +GL AP   +Y+Q+IA+RR  +IGL+ 
Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +  ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD
Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346


>gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
 gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
          Length = 381

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 203/337 (60%), Positives = 262/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  + LT
Sbjct: 45  RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 104

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 105 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 164

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L VF  +
Sbjct: 165 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 224

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLWT 
Sbjct: 225 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 284

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ L+  
Sbjct: 285 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 344

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 345 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium
           petroleiphilum PM1]
 gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 403

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/341 (60%), Positives = 260/341 (76%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK  
Sbjct: 63  AGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDP 122

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 123 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+FN Y EV SI  K  + + +   +  P+F TGT + D+  L+ L V
Sbjct: 183 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIV 242

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP 
Sbjct: 243 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 302

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE 
Sbjct: 303 LWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEE 362

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403


>gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix
           cholodnii SP-6]
 gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6]
          Length = 402

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 208/338 (61%), Positives = 255/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK  NGL
Sbjct: 65  RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER +IKRNLGFF +++SL ANNI L  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + Y   +  P F TGT + DQ  L+ L VF  
Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF 
Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402


>gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
 gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
          Length = 336

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 206/336 (61%), Positives = 259/336 (77%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT+
Sbjct: 1   MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ 
Sbjct: 61  DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + DQ  L+ L VF  + 
Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E
Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           F+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF   
Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336


>gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 380

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 43  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380


>gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 374

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374


>gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
 gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
          Length = 411

 Score =  457 bits (1177), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 206/338 (60%), Positives = 256/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 74  QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + L +   +S P F TGT + DQ  L+ L VF  
Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411


>gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
 gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
          Length = 399

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 206/341 (60%), Positives = 258/341 (75%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           +G  R+   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  
Sbjct: 59  SGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDP 118

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 119 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+F+ Y EV SI  K  + L +   +  P+F TGT + DQ  L+ L V
Sbjct: 179 QYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIV 238

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP 
Sbjct: 239 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 298

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+ + R +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE 
Sbjct: 299 LWTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 358

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 359 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399


>gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
 gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
          Length = 399

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 259/346 (74%), Gaps = 2/346 (0%)

Query: 9   PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           P   G K  RVN  DKR++N  +DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+A
Sbjct: 54  PAAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIA 113

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           LWK  NGLT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAF+EA+
Sbjct: 114 LWKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAI 173

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+H +QYI+ SLG+ E E FN Y E+  I AK ++ L +   L+ PSF TGT +ADQ  L
Sbjct: 174 HTHAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLL 233

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F  + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H  FGID+IN +K
Sbjct: 234 KSLIAFACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVK 293

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +ENPHLWT EF+++ + M  +A  LE AYA +TMP+G +GLN+    +YM+FI NRR +Q
Sbjct: 294 LENPHLWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQ 353

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           IGL  L++   NPFPWMSE++DLKKE NFFE RVTEYQ G  L WD
Sbjct: 354 IGLGTLYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399


>gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
 gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
          Length = 396

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 203/338 (60%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 59  RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNGL 118

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EV SI AK  + + + + +  P+F TGT + DQ  L+ L VF  
Sbjct: 179 VESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFAC 238

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 239 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWT 298

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGL+ LF 
Sbjct: 299 PAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALFP 358

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta
           [Verminephrobacter eiseniae EF01-2]
 gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae
           EF01-2]
          Length = 399

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/357 (58%), Positives = 264/357 (73%), Gaps = 9/357 (2%)

Query: 5   TGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
           TG++P  +G         ++RVN  DKR++N ++DVNQL+PLKY WAWEKYL++C NHWM
Sbjct: 43  TGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWM 102

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M  D+ALWK+  GL+DDER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ
Sbjct: 103 PQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 162

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
           +LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P F 
Sbjct: 163 FLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFH 222

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           TG+   DQ  L+ L VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H 
Sbjct: 223 TGSAANDQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHC 282

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           NFGID+INQIK+ENP LWT  F+ +   +  +A  LE  YA +TMP G +G+NA   + Y
Sbjct: 283 NFGIDLINQIKLENPLLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFKGY 342

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +++IANRR  QIGLE LF    NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 343 LRYIANRRATQIGLETLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399


>gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
 gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
          Length = 360

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+  WK+  
Sbjct: 22  GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DE  ++KRNLGFF +++SL ANNIVL  YR ++ PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 82  -LSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y E+ SI  K  + + +  TL +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+EF+ +   +   A  LE AYA +TMP+G +GLNA   ++Y++FIANRR  QIGLEP+
Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium
           violaceum ATCC 12472]
 gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 360

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVNV DK+++N  +DVNQL+P K+ WAWEKYL+ C NHWMP EV MQ D+  WK+  
Sbjct: 22  GTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT+DE  ++KRNLGFF +++SL ANNIVL  YR +++PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 82  -LTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQ 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y EV SI  K  + + +   L +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVF 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKLENPLL 260

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT  F+ +   +  +A  LE AYA +TMP+G +GLNA   ++Y++FIANRR  QIGL+PL
Sbjct: 261 WTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIANRRMQQIGLDPL 320

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 321 FPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 191/303 (63%), Positives = 238/303 (78%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           C NHWMP E+ M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++
Sbjct: 1   CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK  + + +  TL
Sbjct: 61  APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           + P+FTTGT +ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+R
Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+H NFGID+INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA
Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              + Y++FI+NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L
Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300

Query: 350 KWD 352
            W+
Sbjct: 301 SWE 303


>gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
 gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
          Length = 357

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/334 (58%), Positives = 257/334 (76%), Gaps = 3/334 (0%)

Query: 20  DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++KR++N  + DVNQL+P+KY WAWE Y + C NHWMP+EVPM  D+  W++ + LTDDE
Sbjct: 26  EEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTGS-LTDDE 84

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ SL
Sbjct: 85  KLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVESL 144

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           GLD+ E+FNMYRE+PSI  K  + +Q T  L  P+FTT T +  Q+FL++L  +Y++ EG
Sbjct: 145 GLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIMEG 204

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FYTGF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +FQ
Sbjct: 205 IFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADFQ 264

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ EA  LE+AYA + +P+G VGLN      Y+Q IA+RR  +IGL P    + N
Sbjct: 265 ERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGL-PTQYGSAN 323

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 324 PFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357


>gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium
           vinosum DSM 180]
          Length = 280

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 187/280 (66%), Positives = 233/280 (83%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D+NQL+P KY WAW+KYL AC NHWMP E+ M  DLALWK  +GLT+DERL++KRNLGF
Sbjct: 1   ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM
Sbjct: 61  FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           YREVP++  KA WAL +TQ L+ P F TGT + DQ+ L +L  FYV+FEG++FY GF QI
Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+   M+ EA
Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             LE  YAH+TMP+G +GLNA   E Y+ FIANRRC QIG
Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280


>gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
 gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
          Length = 353

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/344 (57%), Positives = 257/344 (74%), Gaps = 3/344 (0%)

Query: 10  IQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           + A   R    +KR++N A+ DVNQL+P+KY WAWE YL+ C NHWMPTEVPM  D+ +W
Sbjct: 12  LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+
Sbjct: 72  KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF Y++ SLGL EGE+FNMY EVP+I  K  + ++ T  + S  FTT T +  Q FL++
Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FYTGF  ILS  R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E
Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT++FQQ+   ++ EA  LEI YA + +P+G +GLN      Y+Q IA+RR  +IG
Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L  L+  + NPFPWMSE +DL KEKNFFETRVTEYQ G  L WD
Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353


>gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 353

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/339 (58%), Positives = 254/339 (74%), Gaps = 3/339 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM  D+ LW+S N 
Sbjct: 17  QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y
Sbjct: 76  LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLD  E+FNMYREV SI  K  + +  T+ +  P FTT T +  Q+F+++L  FY
Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ EG++FY+GF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN IK ENP  W
Sbjct: 196 VIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEENPEAW 255

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+E ++    M+ +A   EIAYA E +P G +GLNA    +Y+Q+IA+RR  +I L P+ 
Sbjct: 256 TEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIEL-PVQ 314

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 315 YRSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353


>gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
 gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
          Length = 361

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/332 (58%), Positives = 251/332 (75%), Gaps = 3/332 (0%)

Query: 22  KRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N    DVNQL+PLKY WAWE YL+ C NHWMPTEVPM  D+  W+S N LT  ERL
Sbjct: 32  KRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRS-NKLTAGERL 90

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAFEEA+H+HTF YI+ SLGL
Sbjct: 91  VIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTFLYIVESLGL 150

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E E+FNMY E+PSI  K  + +Q T  +  P F+T T +  Q+FLQ+L  +Y++ EG++
Sbjct: 151 SEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGMQKFLQNLIGYYIIMEGIF 210

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF  +LS  R N M G+ EQ+QYI+RDE++HLNFGID+IN IK ENP LWT EFQ  
Sbjct: 211 FYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLINGIKAENPELWTTEFQAH 270

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  LEIAYA++ +P G +GLNA S   Y+Q +A+RR  +IGL P+F ++ +PF
Sbjct: 271 IYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADRRLERIGLAPIF-HSSHPF 329

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PWMSE +DL KEKNFFETRVTEYQ  + L+W+
Sbjct: 330 PWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361


>gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 342

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/338 (56%), Positives = 254/338 (75%), Gaps = 3/338 (0%)

Query: 16  RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           R N  DKR++N  + DVNQL+PL+YGWAWE YL+ C NHWMP EV M  D+A+W+S + L
Sbjct: 7   RFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRSTS-L 65

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           + DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +I
Sbjct: 66  SADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLHI 125

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FNMY E+P I+ K  + +Q T  +  P F+T T    Q F+++L  +YV
Sbjct: 126 VESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYYV 185

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +WT
Sbjct: 186 IMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIWT 245

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EFQ +   ++ ++  LE  YA E +P+G +GL+A     Y+Q+IA+RR  +IGL   + 
Sbjct: 246 NEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQYG 305

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L+WD
Sbjct: 306 -SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342


>gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Weiss]
 gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum MopnTet14]
 gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia
           muridarum Nigg]
          Length = 346

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/343 (57%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  SI AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   M+  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 434/Bu]
 gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2tet1]
 gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis 434/Bu]
 gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 346

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/343 (56%), Positives = 260/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta
           [Methylacidiphilum infernorum V4]
 gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 361

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N
Sbjct: 25  KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F 
Sbjct: 84  RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDE E+FNMY EV SI+ K  + +  T+ +    F T + +  Q+F+++L  F
Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP +
Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT  FQ++   M+ E+  LE AYA + +P+G +GLN+   + Y+++IA+RR  +IG +  
Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +  ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W
Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361


>gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 350

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E       KR+LN +  DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS N
Sbjct: 14  EAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS-N 72

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF 
Sbjct: 73  RLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFH 132

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SL LD+ E+F+MY  V SI AK  + ++ T+ +    FTT T +  Q FL++L  F
Sbjct: 133 YIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGF 192

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF  ILS  R N M GI EQ+QYI+RDES+HLNFGID+IN IK ENP +
Sbjct: 193 YIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEV 252

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+ +   M+ EA  LEI YA + +P G +GLNA     Y+ +IA+RR  +IGL+P 
Sbjct: 253 WTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQ 312

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +  T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W
Sbjct: 313 YN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350


>gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D/UW-3/CX]
 gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276]
 gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276s]
 gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
           Reductase From Chlamydia Trachomatis
 gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9768]
 gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11222]
 gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11074]
 gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9301]
 gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-EC]
 gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-LC]
          Length = 346

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis A/HAR-13]
 gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70]
 gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70s]
 gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D(s)2923]
 gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis A/HAR-13]
 gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis Sweden2]
 gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/150]
 gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/11023]
          Length = 346

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 344

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/338 (57%), Positives = 256/338 (75%), Gaps = 5/338 (1%)

Query: 16  RVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           R   D K+++N +  DVNQLLPLKY WAWE YL+ C NHWMP+EVPM  D+  WKS + +
Sbjct: 11  RFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-DSI 69

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           ++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F YI
Sbjct: 70  SEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFLYI 129

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FNMYRE+ +I+ K  + +Q T+ L      T T    Q+FL++L  +Y+
Sbjct: 130 VDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDGE--TKTLAGKQQFLKNLVGYYI 187

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP +W 
Sbjct: 188 IMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEIWN 247

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           ++   +   ++ +A  LEIAYA E +P G +GLNA    +Y+Q++A+RR  +IGL  ++K
Sbjct: 248 EDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAIYK 307

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            + NPFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 308 -SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344


>gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
           Reductase R2 From Chlamydia Trachomatis
          Length = 346

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HT+ YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 359

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 175/291 (60%), Positives = 231/291 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           KIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y+
Sbjct: 309 KIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359


>gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           caviae GPIC]
 gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           caviae GPIC]
          Length = 346

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/338 (55%), Positives = 258/338 (76%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV ++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS N 
Sbjct: 11  KRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-ND 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SLGLDEGE+FN Y E  +I AK ++ +  T  + +P+F+T + +  ++F+++L  +Y
Sbjct: 130 ICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           ++E Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 SQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            Y++NPFPWMSE IDL KEKNFFETRVTEYQ    L W
Sbjct: 310 -YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346


>gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
 gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
          Length = 359

 Score =  407 bits (1047), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/352 (56%), Positives = 250/352 (71%), Gaps = 4/352 (1%)

Query: 3   NNTGLSPI-QAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + T +SP+      R   D KR++N ++ DVNQL+PLKY WAWE YL+ C NHWMPTEV 
Sbjct: 10  SKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMPTEVG 69

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+  W+S   L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQYLLRQ
Sbjct: 70  MTKDIETWRSSK-LSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQYLLRQ 128

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I  K    ++ T  +    FTT T +
Sbjct: 129 AFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTTDTFE 188

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             Q FL++L  +Y++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLNFGID
Sbjct: 189 GAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLNFGID 248

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN IK ENP LWT EFQQ     +  A  LEI YA + +P G +GLN     +Y+Q IA
Sbjct: 249 LINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYVQHIA 308

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +RR  +IGL P    + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 309 DRRLERIGL-PAQYGSANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359


>gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila
           psittaci RD1]
          Length = 349

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/343 (55%), Positives = 256/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           psittaci 6BC]
          Length = 346

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/343 (55%), Positives = 256/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346


>gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           felis Fe/C-56]
 gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila
           felis Fe/C-56]
          Length = 349

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/343 (54%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T+ +  P+F+T T +  ++F+++
Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +W+++ Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++  ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349


>gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           abortus S26/3]
 gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila
           abortus S26/3]
          Length = 349

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/343 (54%), Positives = 255/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N  + DVNQL+P+KY WAWE Y++ C N W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
           pecorum E58]
 gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pecorum E58]
          Length = 346

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/338 (55%), Positives = 257/338 (76%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV++++KR++N ++ DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LWKS NG
Sbjct: 11  KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SL LDE E+FN Y E  SI AK ++ +  T  +  P+F+T + +  ++F+++L  +Y
Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +KE Q++   ++  A  LEI YA + +PKG +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             ++NPFPWMSE +DL KEKNFFETRVTEYQ  A L W
Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346


>gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae TW-183]
 gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae
           TW-183]
          Length = 365

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 30  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 88

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 89  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 148

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++L  +Y
Sbjct: 149 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 208

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 209 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 268

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 269 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 329 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365


>gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae CWL029]
 gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae J138]
 gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae AR39]
 gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae
           CWL029]
 gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae
           J138]
 gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae LPCoLN]
          Length = 346

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 11  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++L  +Y
Sbjct: 130 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 310 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346


>gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
          Length = 328

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/293 (60%), Positives = 224/293 (76%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A  KRVNV +KR++N  +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  
Sbjct: 17  ATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWKDP 76

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +
Sbjct: 77  NGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 136

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + D++ L+ L V
Sbjct: 137 QYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSLIV 196

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPH
Sbjct: 197 FACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPH 256

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           LWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC
Sbjct: 257 LWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGYLRFICNRRC 309


>gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 158/248 (63%), Positives = 202/248 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D 
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADT 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+E 
Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLW 253
           KIENPHLW
Sbjct: 309 KIENPHLW 316


>gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
 gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
          Length = 313

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/296 (56%), Positives = 225/296 (76%), Gaps = 2/296 (0%)

Query: 15  KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +RV  +DKR++N ++ DVNQL+PLKY WAWE Y++ C NHWMPTEVPM  D+  W+S + 
Sbjct: 16  QRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTEVPMTKDIETWRS-DK 74

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVHSHTF Y
Sbjct: 75  LTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLY 134

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++ SLGL+EGE+FNMY EVP+I  K  + ++ T  + SP F+T + +  Q FL++L  +Y
Sbjct: 135 VVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDSYEGLQAFLKNLIGYY 194

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP LW
Sbjct: 195 IIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFGIDLINGIKAENPDLW 254

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           T EFQ +   ++ +A  LEI YA + +P G +GLN      Y+ ++A+RR  +IGL
Sbjct: 255 TAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHYVADRRVERIGL 310


>gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
 gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
          Length = 330

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 165/322 (51%), Positives = 225/322 (69%), Gaps = 2/322 (0%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N++LPL Y WA + Y +  NN+W+P E+PMQDD++ W   + L+D ER +I+ NLGFF
Sbjct: 11  DPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQWNG-DALSDAERQLIEWNLGFF 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           +++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   L+ MY
Sbjct: 70  STAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYGMY 129

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             VPSI  K  + +  T+ +  P FT  T    +EFL+DL  FYV+ EG++FY GFA +L
Sbjct: 130 DRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAGFAMML 189

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT  F  +   ++  A 
Sbjct: 190 GLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDLITNAV 249

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L+  +  TENPFPWMSE +DL
Sbjct: 250 ELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMSEQVDL 308

Query: 330 KKEKNFFETRVTEYQQGAELKW 351
            KEKNFFET+VTEYQ G  L W
Sbjct: 309 NKEKNFFETQVTEYQSGGSLDW 330


>gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus
           utahensis DSM 12940]
 gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM
           12940]
          Length = 330

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 225/325 (69%), Gaps = 2/325 (0%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD+A W     LTD ER +++ NL
Sbjct: 8   AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQWNGDE-LTDAERQLVEWNL 66

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
           GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG +   L+
Sbjct: 67  GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            MY  VPSI  K  + +  T+++  P FT       ++ L+DL  FYV+ EG++FY GFA
Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIFFYAGFA 186

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF  +   ++ 
Sbjct: 187 MMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSEVIDLIK 246

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  LE  YA E  P+  +G++      Y+++IA+RR  Q+ L   +  TENPFPWMSE 
Sbjct: 247 EAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPFPWMSEQ 305

Query: 327 IDLKKEKNFFETRVTEYQQGAELKW 351
           +DL KEKNFFET+VTEYQ G  L+W
Sbjct: 306 VDLNKEKNFFETQVTEYQSGGSLEW 330


>gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
 gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
          Length = 330

 Score =  351 bits (901), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 162/330 (49%), Positives = 228/330 (69%), Gaps = 4/330 (1%)

Query: 24  MLNARS--DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           ++N  S  D N++LP+ Y WA E Y +   N+W P EVPM DD+  W++   L+ +ER +
Sbjct: 3   LINTESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWENDE-LSSEERQL 61

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG D
Sbjct: 62  VEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              L+ MY  +P+I AK  + +  TQ +  P F   + +  +EFL+DL  FYV+ EG++F
Sbjct: 122 PEYLYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIFF 181

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GFA +L L R  KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN  +WT  F+ + 
Sbjct: 182 YAGFAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAEI 241

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             +L EA  LE  YA E  P+  +G+      +Y++++A+RR  Q+G+EP++  T+NPFP
Sbjct: 242 EGLLREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPFP 300

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           WM+E +DL KEKNFFET V EYQ G  L+W
Sbjct: 301 WMAEQVDLNKEKNFFETNVAEYQSGGSLEW 330


>gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
 gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
          Length = 330

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/326 (49%), Positives = 228/326 (69%), Gaps = 2/326 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD++ W   + L+D ER +++ N
Sbjct: 7   DAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQWNG-DALSDAERQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG +   +
Sbjct: 66  LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDYM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  +PSI  K  + +  T+ ++   F   T +  ++F++DL  FYV+ EG++FY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT  F  +   ++
Sbjct: 186 AMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDEVVELI 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L P    T+NPFPW+SE
Sbjct: 246 TEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDL-PTQYGTDNPFPWLSE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351
            +DL KEKNFFET+VTEYQ G  L W
Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
 gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
          Length = 330

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/326 (49%), Positives = 223/326 (68%), Gaps = 2/326 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +   D N++LP+ Y WA + Y     N+W+P E+PMQ+D+A W   + L+D E+ +++ N
Sbjct: 7   DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQWNG-DALSDSEKQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   +
Sbjct: 66  LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  VPSI  K  + +  T+ L  P FT       ++ L+DL  FYVV EG++FY GF
Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP  WT EF  + R ++
Sbjct: 186 AMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEVRDLI 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  LE  YA E  P   +G++     +Y++ +A+RR  Q+ L+  +  T+NPFPWMSE
Sbjct: 246 EKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFPWMSE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351
            +DL KEKNFFET+VTEYQ G  L W
Sbjct: 305 AVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 243

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 192/243 (79%)

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++
Sbjct: 1   NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S P F TGT D D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R
Sbjct: 61  SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA
Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L
Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240

Query: 350 KWD 352
            WD
Sbjct: 241 SWD 243


>gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           sp. NRC-1]
 gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           salinarum R1]
 gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1]
 gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium
           salinarum R1]
          Length = 331

 Score =  335 bits (858), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +A  D N++LP+ Y WA E Y     N+W P EV MQ D++ W+  N LTD ER +++ N
Sbjct: 7   DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQG-NELTDAERQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y   SLG D   +
Sbjct: 66  LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  +PSI  K  + +  T+ +   +FT  T D  ++FL+DL  FYV+ EG++FY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L+L R  KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ +  +++
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  LE  YA +  P   +G+++     Y++++A+RR  Q+ ++P++  T+NPFPWM+E
Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
            +DL  E NFFE  V+EYQQG  L WD
Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331


>gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
 gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/189 (72%), Positives = 153/189 (80%)

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           ++TQ L  P+F TGT +AD+ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ
Sbjct: 35  KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           YQYI+RDES+HLNFGID+INQIKIENP LWT  FQ++ R ML EA  LE AY  +TMP+G
Sbjct: 95  YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           F GLNA  CEQYM FI NRRC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EY
Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214

Query: 344 QQGAELKWD 352
           Q G  L WD
Sbjct: 215 QNGGALTWD 223


>gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
 gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
          Length = 374

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 219/354 (61%), Gaps = 8/354 (2%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           ++ L  I  G KR +  D +++  R  DV Q +P+KY    E++L+A  N W+P E+PM 
Sbjct: 24  SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           +D   W +   LT+ E  + K N+ +  +S++LV +N+  AI +H++  E RQY   Q  
Sbjct: 84  EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142

Query: 123 EEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           EE+ H  ++ +I+ S GLDE   G++FN+Y+EVP++T K NW L +T  + +     GT 
Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +A++  L+DL  +Y+ FE ++F  GF+QI +L R  K+   A+QY YI RDE+LH + G+
Sbjct: 203 EANRALLEDLISYYI-FEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298
            +I QI  EN  LW    Q++SR ++ EA  LE  YAH +MP+ G VGL   +  ++  F
Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+  C  +G++PLF+  E+P PW+SE  +L  E NFFE RV EYQ G++L WD
Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120

Query: 348 ELKWD 352
           ELKWD
Sbjct: 121 ELKWD 125


>gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium
           HP15]
          Length = 352

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 197/336 (58%), Gaps = 7/336 (2%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M  D+  +  +  LT 
Sbjct: 23  VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR--LTA 80

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+  +Q+ I 
Sbjct: 81  PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           +L LD+ E++N YR VP+I  K   A +       P      KD  QEF+     F  VF
Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDLQEFIMSYLFFAAVF 200

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+NQI +E  ++    
Sbjct: 201 EGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQI-VEEENI---T 256

Query: 257 FQQKS-RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           F  K+ R M  E+   E AYA   +    +G +A    +  +F+ANRR   +GLE  F  
Sbjct: 257 FDPKAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPG 316

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 317 AKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 333

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/337 (42%), Positives = 196/337 (58%), Gaps = 7/337 (2%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN  DKR++N ++D+NQLLP +Y WAW+ +L A  NHW P E+ M  D+  +   + LT 
Sbjct: 3   VNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDV--YDYNHTLTT 60

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +    L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ I 
Sbjct: 61  NERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 120

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           SLGL++ E++N YR VP I  K   + +  + +         KD   EF+     F  +F
Sbjct: 121 SLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAIF 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTK 255
           EG WFY GF+ I SL R   M G AEQ+QYI+RDE LH  FGI VI   I+ EN  L   
Sbjct: 181 EGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDPT 240

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q    +  E    EIAYA+  + +  +G NA       +FIANRR  Q+G++  F  
Sbjct: 241 AVRQ----LWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +N  PW+ E  +L+KEKNFFETRVTEYQ G  LKWD
Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333


>gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
 gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
          Length = 352

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/350 (40%), Positives = 199/350 (56%), Gaps = 8/350 (2%)

Query: 4   NTGLSPI-QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NT   P    G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M 
Sbjct: 9   NTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  +  +  L+  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +
Sbjct: 69  QDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+  +Q+ I +L LD+ E++N YR VP+I  K   A +              KD  
Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDL 186

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           QEF+     F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+
Sbjct: 187 QEFIMSYLFFAAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246

Query: 243 NQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           NQI + EN  L  K      R M  E+   E AYA+  +    +G +A    +  +F+AN
Sbjct: 247 NQILEEENITLDPKAV----RDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVAN 302

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           RR   +GLE  F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 303 RRARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
 gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
          Length = 352

 Score =  261 bits (668), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 193/340 (56%), Gaps = 5/340 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M  D+  +  +
Sbjct: 18  GGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR 77

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+ T+
Sbjct: 78  --LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 135

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           Q+ I +L LD+ E++N YR VP I  K   A +               D  Q+F+     
Sbjct: 136 QHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVMSYLF 195

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+NQI  E   
Sbjct: 196 FAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEKI 255

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +  R M  E+   E+AYA+  +    +G +A    +  +F+ANRR   +GLE 
Sbjct: 256 TLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEE 312

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 313 PFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40]
 gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 368

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 198/348 (56%), Gaps = 6/348 (1%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            G +     +  V   DKR++N  +D+NQL P KY WAW+ +++A  NHW P ++ M  D
Sbjct: 27  AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +  K+ LT+ ER M +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EE
Sbjct: 87  V--YDYKHNLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +  +++          D    
Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F+     F  VFEG WFY GF+ I +L R   M G AEQ QYIMRDE++H  FGI  ++Q
Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I IEN    T       +TM  EA   E  YA   + +  +G +A    +  +FIANRR 
Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GLE  F   +   PW+ E  +++KEKNFFETRV EYQ G  L+WD
Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQAGG-LEWD 368


>gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
 gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
          Length = 352

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 202/352 (57%), Gaps = 14/352 (3%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A N+ ++P       VNVDDKR++N  +DVNQL P KY WAWE +++A  NHW P +V 
Sbjct: 14  IALNSSVAP-------VNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVN 66

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+  +  +  L   E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ
Sbjct: 67  MSQDVHDYHHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQ 124

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            +EEAVH+ T+Q+ I +L LD+GE++N YR VP I  K   A +              KD
Sbjct: 125 VYEEAVHTWTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKD 184

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             QEF+     F  VFEG WFY GF+ I +L R   M G  EQ+QYI+RDE++H +FG+ 
Sbjct: 185 DLQEFIMSYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLK 244

Query: 241 VINQIKIENPHLWTKEFQQKS-RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           V+NQI +E  ++    F  K+ R M  E+   E  YA+  +    +G +A    +  +F+
Sbjct: 245 VVNQI-LEEENI---SFDPKAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFV 300

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           ANRR   + L   F   +N  PW+ E   ++KEKNFFETRV EYQ GA+L+W
Sbjct: 301 ANRRARTVNLPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352


>gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxidans DMS010]
 gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxydans DMS010]
          Length = 383

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 143/360 (39%), Positives = 199/360 (55%), Gaps = 15/360 (4%)

Query: 2   ANNTGLSPIQA--------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53
           AN+   +P +A          K +N DDKR++N  +D+NQL P KY WAW  +L+A  NH
Sbjct: 30  ANDLSEAPARAEVTEMPLNNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNH 89

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P ++ M  D+  ++ K  LT +ER + +  L +  +S+ L   NI LA+   ++ PE 
Sbjct: 90  WTPLDINMAQDVHDYRHK--LTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPEL 147

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + Y  RQ +EEA+H+ T+Q+ I ++GLD+ E++N YR VP I  K   A     T+    
Sbjct: 148 QIYQARQVYEEALHTWTYQHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSD 207

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                +D  + F+     F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +
Sbjct: 208 IDLRDRDELENFVMSYAFFAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVM 267

Query: 234 HLNFGIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           H +FGI V  QI K EN  L  K+ QQ    M  EA   E  YA   +    +G +    
Sbjct: 268 HASFGIRVCKQIMKEENITLDPKKVQQ----MFEEADAAEETYAGYILRDPILGYSKEVH 323

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               ++ ANRR  Q+G E  F   E   PW+ E  +++KEKNFFET+VTEYQ G  LKWD
Sbjct: 324 HGQFRYTANRRAKQLGFEEPFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383


>gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC
           2396]
 gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC
           2396]
          Length = 405

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/336 (40%), Positives = 191/336 (56%), Gaps = 7/336 (2%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN DDKR++N  +D+NQL P KY WAWE +L+A  NHW P ++ M  D+  +  K  LT 
Sbjct: 76  VNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYDYHHK--LTL 133

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EE++H+ T+Q+ I 
Sbjct: 134 EEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLHTWTYQHCIE 193

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           ++GLD+ E++N YR  P+I  K     +    L  P      +D  + F+     F  +F
Sbjct: 194 TIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFVMAYIFFAGIF 253

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTK 255
           EG WFY GF+ I +L R   M G  EQ QYIMRDE +H  FGI V+ Q IK E   L  K
Sbjct: 254 EGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQIIKEEGVTLDPK 313

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 +T+  EA   E  YAH  + +  +G  A    +  +FIANRR  Q+ L+  F  
Sbjct: 314 AI----KTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQLKLDEPFPG 369

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             N  PW+ E   ++KEKNFFETRVTEYQ GA L+W
Sbjct: 370 AGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405


>gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
 gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
          Length = 404

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 193/347 (55%), Gaps = 5/347 (1%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T  + +  G   V  +DK+++N  +D+NQL P KY WAWE +L+A  NHW P ++ M  D
Sbjct: 63  TNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDINMAQD 122

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +  K  LT +ER +    L +  +S+ +   NI LA+   +S PE + Y  RQ +EE
Sbjct: 123 VHDFHHK--LTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQVYEE 180

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           ++H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +   ++  P      +D    
Sbjct: 181 SLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRDELHN 240

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL     F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +H +FG+ V  Q
Sbjct: 241 FLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLRVARQ 300

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I  E      +   +  R M  E    E  YA   +    +G +A       +FIANRR 
Sbjct: 301 IMREEN---IQPDPKAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIANRRA 357

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +++ LE  F   EN  PW+ E  +++KEKNFFETRVTEYQ G  L W
Sbjct: 358 NKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
            putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/181 (61%), Positives = 140/181 (77%)

Query: 172  PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            P+F TGT ++DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDE
Sbjct: 1126 PNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDE 1185

Query: 232  SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            S+H NFGID+INQ+K+ENPHLWT EF+ + + +  +A  LE  YA +TMP+G +G+NA  
Sbjct: 1186 SMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMNASM 1245

Query: 292  CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             + Y+++IANRR  QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W
Sbjct: 1246 FKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSW 1305

Query: 352  D 352
            D
Sbjct: 1306 D 1306


>gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 360

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LPLKY WA++ Y +  NNHW P ++PMQ D+ LW+S + L+D ER +IK  +G+F+++E
Sbjct: 39  ILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSAAE 97

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG++  E   M+ ++ 
Sbjct: 98  GIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFEDID 157

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +I  K  + +  ++ L      T T D  Q F +++F+F    EG  FY  F  +LSL R
Sbjct: 158 TIERKTAFVVNNSRGLRRDMDLTTTADK-QAFTKNMFLFGQCMEGTQFYGLFGMVLSLYR 216

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NK  GI + ++Y +RDES H+    ++I  +  EN  +WT EF+++ R ++ EA  LE 
Sbjct: 217 QNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELRDLMREAVTLEK 276

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            +  + +P   VGL+A    QY+ +IA+RR   +GL PL    +NPFPW++E++D+KKE+
Sbjct: 277 DFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPWLAEMMDIKKEQ 336

Query: 334 NFFETRVTEYQQGAEL 349
           NFFE RVTEYQ+ + L
Sbjct: 337 NFFEGRVTEYQKASAL 352


>gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
 gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1]
          Length = 337

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/338 (41%), Positives = 193/338 (57%), Gaps = 7/338 (2%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   V+DKR++N   D+NQL P +Y WAWE +LSA  NHW P E+ M DD+  +  +  L
Sbjct: 5   KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ 
Sbjct: 63  SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I SLGLD+ E++N YR VP I AK   + +    +  P      +D   EF      F  
Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           VFEG WFY GF+ + +L R   M   A+Q+QYIMRDE LH  FGI VI Q+ +E  HL  
Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQL-LEEEHL-- 239

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLF 313
           +      + +  EA   E AYA   +    +G +A   CEQ+ +FIANRR  Q+ +   F
Sbjct: 240 RLDPHAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQF-RFIANRRATQLSMPAPF 298

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
               N  PW+ E  +L+KEKNFFETRVT+YQ G  L W
Sbjct: 299 PGATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336


>gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
 gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
          Length = 361

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 196/330 (59%), Gaps = 2/330 (0%)

Query: 22  KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           K+++N R  +   LLPLKY WA+E Y +   NHW P ++ M  D+  WK    +++ ER 
Sbjct: 26  KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI+  I   ++ PE +  L R A EE VH+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L +    T T++  Q+F +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTITENK-QKFAKNVFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI E ++Y +RDES H+    ++   +  ENP +WT EF+ +
Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R  + EA  LE  +  + +P   +GL      QY+ +IA+RR    GL+PL     NP 
Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PW++E++D+KKE+NFFE RVTEYQ+ + L+
Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354


>gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
 gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
          Length = 364

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 197/335 (58%), Gaps = 16/335 (4%)

Query: 23  RMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++  R  +   LLPL+YGWA+E Y +   NHW P +V M  D+  W+ +  L++ +R +
Sbjct: 30  RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++  +G+F+++E +V +NI+  +   ++  E +  L R A EE +H+ +  Y+I+SLG+D
Sbjct: 90  VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-------FLQDLFVFYV 194
             E   M+ ++P+I AK  +    +Q L         +D D +         +++F+F  
Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALR--------RDLDMQDPRSVALLAKNIFLFGQ 201

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG  FY  F  +LSL R  K+ GI   ++Y +RDES H+     ++ ++  ENP +WT
Sbjct: 202 CMEGTQFYGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWT 261

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + R ++ EA  LE  +  + +P   VGLNA    QY+ +IA+RR   +GLEPL  
Sbjct: 262 AEFRDELRELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKP 321

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ENP PW++E++D++KE+NFFE RVTEYQ+ + L
Sbjct: 322 GVENPLPWLAELMDVRKEQNFFEGRVTEYQKASAL 356


>gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 362

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 194/330 (58%), Gaps = 3/330 (0%)

Query: 22  KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y +   NHW P ++PM  D+  W+    +TD ER 
Sbjct: 26  KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I+  +G+F+++E +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  + ++ ++ L      T  ++  Q   +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRRDLDLTQPENK-QLLARNMFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI + ++Y +RDES H+    +++  +  ENP +WT  F+++
Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP 319
            R  + EA  LE  +  + +P   VGL       Y+ +IA+RR   +GL P+     +NP
Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            PW++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354


>gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
 gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
          Length = 336

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 120/317 (37%), Positives = 189/317 (59%), Gaps = 6/317 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           QL PL+Y WA+        N W P E+P+ DD+  W+ +  LTDDER  ++  LGFF   
Sbjct: 22  QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +D   +F  +R+V
Sbjct: 80  ESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRDV 139

Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           P+I AK  +  + T Q L  P  +T   +  Q FL++L  +Y+V EG++FY GF    + 
Sbjct: 140 PAIRAKEAFQQELTRQLLVRPDVST--LEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTF 197

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R N + G+A    ++++DESLHL+FGI +I  +  E+P L T EF ++ + ++  A  L
Sbjct: 198 RRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFAREVKGLILRAVEL 257

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP  WM+  +D+ +
Sbjct: 258 ERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPAQWMATEVDVPE 316

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFE R   Y+  A+
Sbjct: 317 IVNFFEARNIHYEVAAD 333


>gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
          Length = 336

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 119/317 (37%), Positives = 187/317 (58%), Gaps = 6/317 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           QL PL+Y WA+        N W P E+P+ DD+  W+ +  LTDDER  ++  LGFF   
Sbjct: 22  QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +D   +F  +R V
Sbjct: 80  ESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRNV 139

Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           P+I AK  +  + T Q L  P  +T   +  Q FL++L  +Y+V EG++FY GF    + 
Sbjct: 140 PAIRAKEAFQQELTRQLLVRPDVST--LEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTF 197

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R N + G+A    ++++DESLHL+FGI +I  +  E+P L T  F ++ + ++  A  L
Sbjct: 198 RRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFAREVKGLILRAVEL 257

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP  WM+  +D+ +
Sbjct: 258 ERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPAKWMATEVDVPE 316

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFE R   Y+  A+
Sbjct: 317 IVNFFEARNIHYEVAAD 333


>gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium
           spinosum DSM 4136]
          Length = 361

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 188/329 (57%), Gaps = 2/329 (0%)

Query: 22  KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y     NHW P ++ MQ D+  W+S + + + ER 
Sbjct: 26  KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI   +   ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L      T  ++  +   +++FVF    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRRDLDLTQIENK-RLLAKNIFVFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R  K  GI   ++Y +RDES H+    ++   +  ENP +WT EF+++
Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  LE  +  + +P   VGL A   E Y+ FIA+RR   +GL  L     NP 
Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PW++E+ D++KE+NFFE  VT+YQ+ + L
Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353


>gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
 gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
          Length = 332

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 184/314 (58%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y ++S  EC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 71  LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + L+Y + ++  +    T +  Q+F+++L  + VV EG+WFY+GF   LS  +
Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP + T+EF  + R M+ +A  +E 
Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY H+ +P G +GLNA    QY++++A+RR  ++G EP +K T NP  WM+   D  +  
Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEYQQGA 347
           NFFE+  T Y+  A
Sbjct: 310 NFFESTNTSYEANA 323


>gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 328

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 187/315 (59%), Gaps = 6/315 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +L PL + WA+     A +N W P EVP+ DD+  W  +  L+D+ER  ++  LGFF   
Sbjct: 15  ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERRAVEMFLGFFNPM 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           ESLV  N++L++YR ++ PE R YL RQA+EEA H   F+Y+I +L LD   +F ++ E 
Sbjct: 73  ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132

Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           P++ AK  +  Q   Q L +P     + +  Q  +++L  ++V+ EG++FY+GFA  L+ 
Sbjct: 133 PAVAAKELFQRQLAEQWLVTPD--VESVEGLQRLVRNLVGYFVILEGIFFYSGFALALAF 190

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            + N + G+     ++++DESLHL+FGI +I  I  E+P + +  F ++ R ++  A  L
Sbjct: 191 RQRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQLRELILRAVEL 250

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E AY    +P+  +GL+A    +Y+++IA+RR  ++GL P+     NP  WM   +D+ +
Sbjct: 251 EEAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGL-PIAFGEPNPLRWMVAQVDMPE 309

Query: 332 EKNFFETRVTEYQQG 346
             NFFE R   Y+ G
Sbjct: 310 IVNFFEARNIHYEVG 324


>gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 332

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 184/328 (56%), Gaps = 5/328 (1%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D R+    S +  +L PL + WA+       +N W P EVP+ +D+  W  K  LT++ER
Sbjct: 4   DHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHEK--LTEEER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
                 LGFF   ESLV  N+VLAI+ ++  PE R YL RQ +EEA H+  F+Y++ +L 
Sbjct: 62  HAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLP 121

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-SSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           +D  ++F  +REVP++ AK  +    TQ L         T+   +  L++L  ++VV EG
Sbjct: 122 VDREKVFAAHREVPAVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEG 181

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY GF   LS  R N + G+     + ++DESLHL+FG+ +I     E   + T    
Sbjct: 182 IFFYAGFLLALSWRRRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLA 241

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ EA  LE AY    +P+  +GL+A +   Y++++A+RR  ++GLE  F  T N
Sbjct: 242 REVRGLILEAVQLERAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPN 300

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P  WM+  +D+ +  NFFE   T Y+ G
Sbjct: 301 PAKWMATEVDVPEIVNFFEAVNTSYEVG 328


>gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
 gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
          Length = 390

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 3/342 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   + R  +  KR++N  RS    +LPLKY  A+  Y     NHW P  + M  D   W
Sbjct: 43  LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            +   L+  ER +I+  +G+F+++E +V ++++  I  +L+  E +   LR   EE++H 
Sbjct: 103 NT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            +  +II SL +D  E+   + ++PS+  K  +  ++   L      T T +  Q+F + 
Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTANK-QKFAKA 220

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           +F    V EG  FY  FA ILSL R NKM GI + +QY +RDES H+  G  ++ Q+  E
Sbjct: 221 IFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIAE 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT EF+ +    + E   LE  +  + +P+  VG+       Y+++ A+RR   + 
Sbjct: 281 NPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGLD 340

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           L  L     NPF W+ EVI L+KEKNFFETRVTEYQ    LK
Sbjct: 341 LPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382


>gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 331

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 181/314 (57%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA + Y  A  N W P E+ + +D+A +K    +TD+ER  I   + +F  +E
Sbjct: 15  LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAITFLMSYFNPNE 71

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 72  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  ++F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T+EF  + + M+ +A  +E 
Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310

Query: 334 NFFETRVTEYQQGA 347
           NFFE+  T Y+  A
Sbjct: 311 NFFESTNTSYESNA 324


>gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei str. Twist]
 gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei TW08/27]
 gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma
           whipplei TW08/27]
 gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str.
           Twist]
          Length = 327

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 178/314 (56%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y WA + Y  A  N W P E+ + +D+A +K    +T +E+  +   + +F  +E
Sbjct: 14  LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFKK---MTHEEKHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D  E ++ + EVP
Sbjct: 71  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + ++Y + ++  +    T +  ++F+++L  + VV EG+WFY+GF   L   +
Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T +F  + R M+     +E 
Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y H+ +P G +GLN+    QY++++A+RR  ++G +P +  T NP  WM+   D  +  
Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 310 NFFEAINTSYESNA 323


>gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 329

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 182/315 (57%), Gaps = 4/315 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  E   YL +Q +EEA H  +F+Y++ +  +D  + +N + +VP
Sbjct: 71  LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ +K  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP L T EF  + + M+ +A  +E 
Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEYQQGAE 348
           NFFE+  T Y+  A+
Sbjct: 310 NFFESTNTSYESNAK 324


>gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 357

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 179/316 (56%), Gaps = 4/316 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA E Y  A  N W P E+ + +DLA ++    ++D+ER  +   + +F  +E
Sbjct: 45  LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFER---MSDEERHALTFLMSYFNPNE 101

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H  +F+Y++ +  +D    +  +  VP
Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ AK  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP + T EF  + + M+ +A  +E 
Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY  + +P G +GLNA    QY++++A+RR  ++G  P +  T NP  WM+   D  +  
Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340

Query: 334 NFFETRVTEYQQGAEL 349
           NFFE   T Y+  A+L
Sbjct: 341 NFFEATNTSYEVNAKL 356


>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
 gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
          Length = 348

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 184/324 (56%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E++ +A  N W   EV +  DLA  +    L+  E  ++KR + FFA+ +
Sbjct: 28  LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLRK---LSPAEHHLVKRLVAFFATGD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE    E F    
Sbjct: 85  TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 145 NIPSIKRKADFCFRWIDSIFDLRELRTAADR-RSFLLNLICFAACIEGLFFYGAFAYVYF 203

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DVI+ ++ E P L+  E  +++R ML EA  
Sbjct: 204 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEPELFDDELARQAREMLAEAVD 263

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + + +G  G++      Y++ +A+RRC Q+GLEP++  + NPF +M E+ D++
Sbjct: 264 CETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLEPIYG-SPNPFTFM-ELQDVQ 321

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV  YQ G   E+ +D
Sbjct: 322 ELSNFFERRVAAYQIGVSGEVAFD 345


>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
 gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
          Length = 344

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 179/317 (56%), Gaps = 9/317 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DLA       L+  ER ++ R + FFA+ +
Sbjct: 24  LRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLA---DLARLSPAERHLVSRLVAFFATGD 80

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE E F  +    
Sbjct: 81  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDERERFAAFAAIE 140

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T++  + FL +L  F    EG++FY  FA +  
Sbjct: 141 NIPSIRRKAEFCFRWIDSIFELR-ELKTREDRRAFLLNLICFAACIEGLFFYGAFAYVYF 199

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  E  ++ R ML EA  
Sbjct: 200 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEEPDLFDDELARQVREMLAEAVE 259

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + + +G  GL+     QY+Q +A+RR  Q+G+ PL+  + NPF +M E+ D++
Sbjct: 260 CEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGIAPLYG-SANPFAFM-ELQDVQ 317

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE RV+ YQ G 
Sbjct: 318 ELSNFFERRVSAYQVGV 334


>gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 136

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 108/136 (79%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA
Sbjct: 1   MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            +TMP+G +G+NA   E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFF
Sbjct: 61  RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120

Query: 337 ETRVTEYQQGAELKWD 352
           ETRV EYQ G  L WD
Sbjct: 121 ETRVIEYQTGGALSWD 136


>gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium acnes KPA171202]
 gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium
           acnes KPA171202]
 gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL074PA1]
 gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA2]
 gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA1]
 gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA1]
 gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA1]
 gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL056PA1]
 gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL001PA1]
 gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA2]
 gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA2]
 gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL045PA1]
 gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA2]
 gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA3]
 gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA1]
 gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA2]
 gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA3]
 gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA1]
 gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA4]
 gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL060PA1]
 gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL038PA1]
 gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA1]
 gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA3]
 gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA2]
 gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL097PA1]
 gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA1]
 gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA2]
 gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL020PA1]
 gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL099PA1]
 gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta
           [Propionibacterium acnes 266]
          Length = 328

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL103PA1]
          Length = 328

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA1]
 gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA4]
 gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA3]
 gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA2]
          Length = 328

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA1]
 gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL092PA1]
          Length = 328

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 170/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA3]
          Length = 328

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  ++F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
 gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
          Length = 331

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 179/324 (55%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  DL      + L+  ER ++ R + FFA+ +
Sbjct: 11  LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLT---DLDRLSAAERHLVSRLVAFFATGD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE E    F    
Sbjct: 68  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  +L +       +D  + FL +L  F    EG++FY  FA +  
Sbjct: 128 NIPSIRRKAEFCFRWIDSLGNLQRLESREDR-RAFLLNLICFAACIEGLFFYGAFAYVYF 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+ ++  Q+ R ML EA  
Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQVREMLAEAVE 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL       Y++ +A+RR  Q+GLEP++  T NP  +M E+ D++
Sbjct: 247 CETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPLGFM-ELQDVQ 304

Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352
           +  NFFE RV+ YQ   G  + +D
Sbjct: 305 ELSNFFERRVSAYQVAVGGSVSFD 328


>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
 gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
          Length = 342

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 177/316 (56%), Gaps = 9/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DLA       L+  E+ ++ R + FFA+ +
Sbjct: 22  LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLA---DLAKLSPAEQHLVSRLVAFFATGD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE    E F    
Sbjct: 79  TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 139 NIPSIARKAEFCFKWIDSIFELR-ELKTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  E +Q+ R ML EA  
Sbjct: 198 LRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQVRDMLAEAVD 257

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + + +G  G+      QY+Q +A+RR   +G+ P++  T NPF +M E+ D++
Sbjct: 258 CEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYGST-NPFAFM-ELQDVQ 315

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ G
Sbjct: 316 ELSNFFERRVSAYQVG 331


>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 365

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 175/318 (55%), Gaps = 8/318 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E +  A  N W   E+ +  DLA     N L+  ER ++ R + FFA+ +
Sbjct: 44  LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLA--DLHNKLSPAERHLVSRLVAFFATGD 101

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
           ++VANN+VL +Y H+++PE R YL RQ FEEAVH   +  ++ +   DE E F  +  V 
Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161

Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             PSI  KA +   +  ++ +      TK+  ++FL +L  F    EG++FY  FA +  
Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVYF 220

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  +V+  ++ E P L+  E   + R ML EA  
Sbjct: 221 LRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAVD 280

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+      Y++ +A+RR  Q+G+  ++  T+NP  +M E+ D++
Sbjct: 281 AEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDVQ 338

Query: 331 KEKNFFETRVTEYQQGAE 348
           +  NFFE RV+ YQ G E
Sbjct: 339 ELSNFFERRVSAYQVGVE 356


>gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA2]
 gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL044PA1]
 gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium sp. P08]
          Length = 324

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 173/314 (55%), Gaps = 8/314 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P EV + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++GLEP + +  NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIPGMNA----DYVKYLADRRLEELGLEPEY-HVANPAKWMATANDTLQLV 304

Query: 334 NFFETRVTEYQQGA 347
           NFFET  T Y+  A
Sbjct: 305 NFFETTNTSYEVNA 318


>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
 gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
          Length = 342

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 179/316 (56%), Gaps = 9/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DLA       L+  ER ++ R + FFA+ +
Sbjct: 22  LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLA---DLAKLSPAERHLVSRLVAFFATGD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE E F  +  V 
Sbjct: 79  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138

Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 139 NIPSIARKAEFCFRWIDSIFELR-ELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV+  ++ E P L+  E +++ + ML EA  
Sbjct: 198 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQVKEMLAEAVE 257

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+++A + + +G  G++     +Y+Q +A+RR   +G+ P++  + NPF +M E+ D++
Sbjct: 258 CEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPFAFM-ELQDVQ 315

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ G
Sbjct: 316 ELSNFFERRVSAYQVG 331


>gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
           BCW-1]
          Length = 340

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 176/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++        TKD  + FL +L  F    EG++FY  FA 
Sbjct: 134 AVENIPSIREKAEFCFRWIDSVDKID-RLETKDERRRFLLNLICFAACIEGLFFYGAFAY 192

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF   V++ ++ E P L+  E QQ+   ML E
Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLRE 252

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +   +G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 253 AVEAELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQ 310

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
           ++++  NFFE R + YQ   E
Sbjct: 311 NVQELTNFFERRASAYQVAVE 331


>gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 159

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 114/142 (80%), Gaps = 2/142 (1%)

Query: 15  KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N  + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 11  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSI 155
           I  SLGLDEGE+FN Y E  SI
Sbjct: 130 ICESLGLDEGEVFNAYNERASI 151


>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
 gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
          Length = 350

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 189/348 (54%), Gaps = 16/348 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    ++    GE+ + +D    L  R       P++Y   ++++  A  N W   EV +
Sbjct: 5   AETRTVTAATTGERHMLLDPGMDLTLR-------PMRYPHFFDRFKEAIKNTWTVEEVDL 57

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DLA       L+  ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ 
Sbjct: 58  HSDLA---DLAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGT 178
           FEEAVH   +  ++ +   DE E F  +  V   PSI  KA +  ++  ++        T
Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSIFELR-ELRT 173

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +   + FL +L  F    EG++FY  FA +  L     + G+A    ++ RDES+H+ F 
Sbjct: 174 RADRRAFLLNLICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
            DV++ I+ E P L+  + +++ + M+ EA   E  +A + + +G  GL+     +Y+Q 
Sbjct: 234 FDVVDTIRAEEPDLFDADLERQIKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQH 293

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +A+RR   +G+ P++  ++NPF +M E+ D+++  NFFE RV+ YQ G
Sbjct: 294 VADRRLVTLGIAPIYG-SQNPFAFM-ELQDVQELSNFFERRVSAYQVG 339


>gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa]
          Length = 146

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 99/118 (83%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 26  KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           T+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 86  TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143


>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 336

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 177/317 (55%), Gaps = 8/317 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   +E Y +   N W   EV    DL    SK  +T+ E+ +I+R + FFA+ +
Sbjct: 15  LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK--MTESEKHLIRRLVAFFATGD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE-GELFNMYR 150
           S+V NN+VL +Y+H+++PE R YL RQ +EEA+H   +  ++ +     DE  E F    
Sbjct: 73  SIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  +++  +     +D  + FL +L  F    EG++FY  FA +  
Sbjct: 133 NIPSIKKKADFCYKWIDSINELTELNTIEDR-RRFLMNLICFATCVEGLFFYAAFAYVYF 191

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F I+V+   + E P L+ ++ +     ML +A  
Sbjct: 192 LRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDMVVQMLEDAIE 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +AH+ +  G  GL+A    QY+++ A++R   + + P +   +NPF +M E+ D++
Sbjct: 252 CEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYN-VKNPFIFM-ELQDMQ 309

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE RV+ YQ G 
Sbjct: 310 ELANFFERRVSAYQTGV 326


>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
 gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
          Length = 350

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 178/316 (56%), Gaps = 9/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DL        L+  ER ++ R + FFA+ +
Sbjct: 30  LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLG---DLAKLSSAERHLVSRLVAFFATGD 86

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   +E E F  +  V 
Sbjct: 87  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146

Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 147 NIPSIARKAEFCFRWIDSIFELR-ELRTQADRRAFLLNLICFAACIEGLFFYGAFAYVYF 205

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  + +++ + M+ EA  
Sbjct: 206 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQVKEMVAEAVD 265

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + + +G  GL+     +Y+Q +A+RR   +G+ P++  + NPF +M E+ D++
Sbjct: 266 CEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPFAFM-ELQDVQ 323

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ G
Sbjct: 324 ELSNFFERRVSAYQMG 339


>gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 338

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 182/337 (54%), Gaps = 16/337 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
             +DK +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L+  
Sbjct: 3   TTEDKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPG 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T 
Sbjct: 59  EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTL 115

Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           L        D    F+   E+PSI  KA +  ++  ++        TK   + FL +L  
Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEKIE-RLETKADRRRFLLNLIC 174

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F    EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P 
Sbjct: 175 FAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPD 234

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+  E QQ+   ML EA   E+ +  +   +G  G+N  S  QY++ +A++R  ++G  P
Sbjct: 235 LFDDELQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGF-P 293

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
               +ENPF +M E+  +++  NFFE R + YQ   E
Sbjct: 294 TVYGSENPFSFM-ELQGVQELTNFFERRPSAYQVAVE 329


>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
          Length = 347

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  ER +I R + FFA+ +
Sbjct: 27  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPAERHLIGRLVAFFATGD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 84  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA 
Sbjct: 141 AVENIPSIREKAEFCFRWMDSVERLD-RLETRSDRRRFLLNLICFAACIEGLFFYGAFAY 199

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+ +E  ++   ML E
Sbjct: 200 VYWFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLRE 259

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY+Q +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 260 AVEAELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQ 317

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 318 GVQELTNFFERRASAYQVAVE 338


>gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
           [Kitasatospora setae KM-6054]
          Length = 339

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 182/335 (54%), Gaps = 15/335 (4%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D K+ML        L P++Y   +++Y  A  N W   EV +  D+A       L++ ER
Sbjct: 5   DRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH    Q+ +T L 
Sbjct: 62  HMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 118

Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
                  D    F     +PSI  KA +  +Y   +     +  +K+  + FL +L  F 
Sbjct: 119 TYLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVDHID-SLRSKEDRRAFLLNLICFA 177

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++FY  FA +        + G+A    ++ RDES+H++F   V++ ++ E P L+
Sbjct: 178 ACVEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLF 237

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +  ++   ML EA   E+ +A +   +G  G+N  S  +Y+Q +A++R  ++GL P+ 
Sbjct: 238 DDKMARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGL-PIR 296

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             + NPF +M E+ ++++  NFFE RV+ YQ   E
Sbjct: 297 YGSTNPFGFM-ELQNVQELTNFFERRVSAYQIAVE 330


>gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 338

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 180/339 (53%), Gaps = 16/339 (4%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D+K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+
Sbjct: 5   DEKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPGEQ 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L 
Sbjct: 61  HMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 117

Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
                  D    F     +PSI  KA +  ++  ++          D  + FL +L  F 
Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKIDRLETQADR-RRFLLNLICFA 176

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+
Sbjct: 177 ACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELF 236

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +Q+   ML EA   E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++
Sbjct: 237 DDALRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVY 296

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 297 G-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333


>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           avermitilis MA-4680]
 gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces avermitilis MA-4680]
          Length = 338

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 172/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHLIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 75  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++   +        TK   + FL +L  F    EG++FY  FA 
Sbjct: 132 AVENIPSIREKAEFCFKWINEVEKLD-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  +V++ ++ E P L+  E QQ+   ML E
Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLRE 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 251 AVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQ 308

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 309 GVQELTNFFERRASAYQVAVE 329


>gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
           ATCC 33331]
          Length = 338

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F+
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFD 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E+PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA 
Sbjct: 132 AVEEIPSIREKAQFCFRWMDSVEKIE-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E +Q+   ML E
Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELRQQVTDMLKE 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +    G  G+N  S  QY++ +A++R  ++G   L+  +ENPF +M E+ 
Sbjct: 251 AVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQ 308

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 309 GVQELTNFFERRPSAYQVAVE 329


>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 340

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA++  ++  ++ S      T+   + FL +L  F    EG++FY  FA 
Sbjct: 134 AVENIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAY 192

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E +Q+   ML E
Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKE 252

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++  ++NPF +M E+ 
Sbjct: 253 AVEAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 310

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331


>gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           albus J1074]
 gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
 gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
          Length = 350

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 176/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 30  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 86

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D  + F 
Sbjct: 87  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPADRADAFA 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++          D  ++FL +L  F    EG++FY  FA 
Sbjct: 144 AVENIPSIREKAEFCFRWMDSVDKLDQLESQADR-RKFLLNLICFAACIEGLFFYGAFAY 202

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + Q++   ML E
Sbjct: 203 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKE 262

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+ 
Sbjct: 263 AVEAELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 320

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE RV+ YQ   E
Sbjct: 321 GVQELTNFFERRVSAYQVAVE 341


>gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
 gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
          Length = 340

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F+
Sbjct: 77  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFD 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E+PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 134 AVEEIPSIREKAQFCFKWMDSVEEIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 192

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML E
Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLRE 252

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +   +G  G+N  S  QY++ +A++R  ++G   L+  +ENPF +M E+ 
Sbjct: 253 AVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQ 310

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331


>gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 338

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F+
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFD 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E+PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA 
Sbjct: 132 AVEEIPSIREKAQFCFRWMDSVEKID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML E
Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDALQQQVTDMLKE 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +   +G  G+N  S  QY++ +A++R  ++G  P    +ENPF +M E+ 
Sbjct: 251 AVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGF-PTVYGSENPFSFM-ELQ 308

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 309 GVQELTNFFERRPSAYQVAVE 329


>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
 gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
          Length = 339

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +   +  ++        T+   + FL +L  F    EG++FY  FA 
Sbjct: 133 AVENIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAACIEGLFFYGAFAY 191

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML E
Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLRE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 252 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 309

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 310 GVQELTNFFERRPSAYQVAVE 330


>gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 336

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 176/327 (53%), Gaps = 15/327 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNA  ++  L P+ Y   +E Y +A  N W   EV    DL   +SK  +TD ER +I 
Sbjct: 2   LLNAGMNLT-LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIH 58

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140
           R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H    Q+ +T L     
Sbjct: 59  RLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALH---VQFYLTLLDTYVP 115

Query: 141 ---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
              D  + F     +PSI  KA + L++  ++   +    T++  + FL +L  F    E
Sbjct: 116 DPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIE 174

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F+  FA +  L     + G+A    ++ RDES H+ F  + I   + E P L+    
Sbjct: 175 GLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARM 234

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q     M+ EA   E  +A + +  G  GL+     QY++++A++R   +GL P+F+  +
Sbjct: 235 QADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVFR-VK 293

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           N  P+M ++ D+++  NFFE RV+ YQ
Sbjct: 294 NSLPFM-DLQDVQELTNFFERRVSAYQ 319


>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
 gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
          Length = 356

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ MI R + FFA+ +
Sbjct: 36  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHMIGRLVAFFATGD 92

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F+
Sbjct: 93  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFD 149

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E+PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 150 AVEEIPSIREKAQFCFKWMDSVEKIERLETAADR-RRFLLNLICFAACIEGLFFYGAFAY 208

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML E
Sbjct: 209 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKE 268

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+ 
Sbjct: 269 AVEAELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQ 326

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 327 GVQELTNFFERRPSAYQVAVE 347


>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
 gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
          Length = 345

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 173/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y +A  N W   EV +  D+A       LT  E+ +I R + FFA+ +
Sbjct: 25  LRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D  + F 
Sbjct: 82  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRADAFA 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++   +          D  + FL +L  F    EG++FY  FA 
Sbjct: 139 AVENIPSIREKAEFCFKWIDEVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAY 197

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  E +Q+ + ML  
Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDAELEQEVKDMLDG 257

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+ 
Sbjct: 258 AVNAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-SSNPFSFM-ELQ 315

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336


>gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           lividans TK24]
 gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
 gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
          Length = 343

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 175/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 23  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 80  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++ S      TK   + FL +L  F    EG++FY  FA 
Sbjct: 137 AVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +++   ML E
Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLRE 255

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 256 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 313

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 314 GVQELTNFFERRPSAYQVAVE 334


>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
 gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
          Length = 338

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 180/337 (53%), Gaps = 16/337 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           + D K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       LT  
Sbjct: 3   STDQKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPA 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T 
Sbjct: 59  EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTL 115

Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           L        D    F+   E+PSI  KA +  ++   +          D  + FL +L  
Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWINEVEKLDRLETQADR-RRFLLNLIC 174

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F    EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P 
Sbjct: 175 FAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPE 234

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+    QQ+   ML EA   E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P
Sbjct: 235 LFDDALQQQVTDMLKEAVDAELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAP 294

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           ++  ++NPF +M E+  +++  NFFE R + YQ   E
Sbjct: 295 VYG-SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVE 329


>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
 gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces coelicolor A3(2)]
 gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
          Length = 343

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 175/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 23  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 80  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++ S      TK   + FL +L  F    EG++FY  FA 
Sbjct: 137 AVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +++   ML E
Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLRE 255

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 256 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 313

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 314 GVQELTNFFERRPSAYQVAVE 334


>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 343

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 23  LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMISRLVAFFATGD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 80  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAASFA 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 137 AVENIPSIREKAEFCFRWMDSVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAY 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDES+H+ F   V++ ++ E P L+  + +++   ML E
Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKE 255

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +AH+    G  G+N  S   Y++ +A++R  ++G   +F  +ENPF +M E+ 
Sbjct: 256 AVEAELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQ 313

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
           D+++  NFFE R + YQ   E
Sbjct: 314 DVQELTNFFERRASAYQVAVE 334


>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 341

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 21  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 77

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 78  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA++  ++  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 135 AVENIPSIREKASFCFKWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 193

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML E
Sbjct: 194 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLRE 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 254 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 311

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 312 GVQELTNFFERRPSAYQVAVE 332


>gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 340

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ +     N W   EV  Q DL   K +  L+  E  +I+R + FFA+ +
Sbjct: 19  LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH   +  ++ +   D       F    
Sbjct: 77  SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI+ KA++ +++  ++        T++  ++FL +L  F    EG++F+  FA +  
Sbjct: 137 NIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVYF 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES HL F  +V+N ++ + P LW  + +     MLHEA  
Sbjct: 196 LRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAVD 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+     QY+ ++A+ R  ++G+ P F   +NPF +M E+ D++
Sbjct: 256 AETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFG-VKNPFSFM-ELQDVQ 313

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE RV+ YQ   
Sbjct: 314 ELTNFFERRVSAYQTAV 330


>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 331

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 171/318 (53%), Gaps = 9/318 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y +A  N W   EV +  DLA       +T +ER +I R + FFA+ +
Sbjct: 11  LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLA---DLARMTPEERHLINRLVAFFATGD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+VANN+VL +Y+H++ PE R YL RQ FEEAVH   +  ++ +   D  E    F    
Sbjct: 68  SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  +L         +D  + FL +L  F    EG++FY  FA +  
Sbjct: 128 HIPSIRNKAEFCFRWIDSLGGLDRLESREDR-RAFLLNLICFAACIEGLFFYGAFAYVYW 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES+H+ F   V++ ++ E P L+  +   +   M+ EA  
Sbjct: 187 FRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQVTQMIEEAVE 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+A+A +    G  G+N     QY++++A++R  ++   P+   T NPF +M E+ D++
Sbjct: 247 AELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRF-PVRYGTANPFAFM-ELQDVQ 304

Query: 331 KEKNFFETRVTEYQQGAE 348
           +  NFFE RV+ YQ   E
Sbjct: 305 ELANFFERRVSAYQVAVE 322


>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 340

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLSPAEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F+
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPQDRAAAFD 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++   +          D  + FL +L  F    EG++FY  FA 
Sbjct: 134 AVENIPSIREKAEFCFRWINEVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAY 192

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+    QQ+   ML E
Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAE 252

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 253 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 310

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331


>gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
 gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
          Length = 340

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 180/335 (53%), Gaps = 16/335 (4%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D K +L+   ++  L P++Y   +++Y  A  N W   EV +  D+        L+  E+
Sbjct: 7   DTKNLLDPGFELT-LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVT---DLAKLSPGEQ 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L 
Sbjct: 63  HLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 119

Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
                  D    F     +PSI  KA +  ++  ++        TK   + FL +L  F 
Sbjct: 120 TYLPDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFLLNLICFA 178

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++FY  FA +  L     + G+A    ++ RDES+H+ F   V++ ++ E P L+
Sbjct: 179 ACIEGLFFYGAFAYVYWLRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLF 238

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             E +Q+   ML EA   E+ +A +    G  G+N  S ++Y+Q +A++R  ++G   +F
Sbjct: 239 DDELRQQVTDMLKEAVEAELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVF 298

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             +ENPF +M E+ ++++  NFFE R + YQ   E
Sbjct: 299 G-SENPFSFM-ELQNVQELTNFFERRASAYQVAVE 331


>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 341

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+ +E+ +I R + FFA+ +
Sbjct: 21  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPEEQHLIGRLVAFFATGD 77

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 78  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 135 AVENIPSIREKAEFCFRWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 193

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+ ++  Q+   ML E
Sbjct: 194 VYWFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLRE 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 254 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQ 311

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 312 GVQELTNFFERRPSAYQVAVE 332


>gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
           xanthus DK 1622]
 gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus
           xanthus DK 1622]
          Length = 349

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 171/314 (54%), Gaps = 8/314 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   +E Y +A  N W   EV    DL   +SK  +TD ER +I R + FFA+ +
Sbjct: 24  LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F    
Sbjct: 82  SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAMAFAAVD 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA + +++  ++     T  TK   ++FL +L  F    EG++F+  FA +  
Sbjct: 142 NIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFLLNLICFAGCIEGLFFFAAFAYVYF 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F  + I   + E P L+  + ++    ML EA  
Sbjct: 201 LRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVARKEEPDLFDAQMERDVVAMLREAVE 260

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G +GL+      Y++++A++R   +G+ P+F  T+NP  +M ++ D++
Sbjct: 261 CETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQMLGMTPVFG-TKNPLHFM-DLQDVQ 318

Query: 331 KEKNFFETRVTEYQ 344
           +  NFFE RV+ YQ
Sbjct: 319 ELTNFFERRVSSYQ 332


>gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 332

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 8/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E Y  A  N W   EV    DLA  + +  +T  ER +I R + FFA+ +
Sbjct: 11  LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLRGR--VTPAERHLIHRLVAFFATGD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
           S+V NN+VL +Y+H++ PE R YL RQ +EEA+H   +  ++ +   D       +  V 
Sbjct: 69  SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128

Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             PSI  KA++  ++  ++        T+   + FL +L  F    EG++F+  FA +  
Sbjct: 129 NIPSIKLKADFCFKWIDSIEGLD-RLETRAHRRAFLLNLVCFAACIEGLFFFAAFAYVYF 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F   VI+ ++ E P L+  E + +   ML EA  
Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAVE 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E A+A + + +G  GL+      Y++++A+RR   +G+ P+F   +NPF +M ++ D++
Sbjct: 248 CETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFM-DLQDVQ 305

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ G
Sbjct: 306 ELTNFFERRVSAYQLG 321


>gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 339

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +   +  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 133 AVENIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAY 191

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML E
Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLRE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+ 
Sbjct: 252 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 309

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 310 GVQELTNFFERRPSAYQVAVE 330


>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 339

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 173/325 (53%), Gaps = 15/325 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---PDLAKLSPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRNAAFA 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA 
Sbjct: 133 AVENIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAACIEGLFFYGAFAY 191

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML E
Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ ++ +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 252 AVEAELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQ 309

Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352
            +++  NFFE R + YQ   E   D
Sbjct: 310 GVQELTNFFERRPSAYQVAVEGSVD 334


>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 340

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +   +  ++          D  + FL +L  F    EG++FY  FA 
Sbjct: 134 AVENIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAY 192

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML E
Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLRE 252

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+ 
Sbjct: 253 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 310

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331


>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
 gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
          Length = 355

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L++ E+ MI R + FFA+ +
Sbjct: 35  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGEQHMIGRLVAFFATGD 91

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 92  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 151

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 152 NIPSIREKAEFCFKWMDSVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 210

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  +V++ ++ E P L+ +  +Q+   ML EA  
Sbjct: 211 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDELLRQQVTDMLKEAVE 270

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 271 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 328

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 329 ELTNFFERRPSAYQVAVEGTVD 350


>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
 gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
 gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
 gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
          Length = 345

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ +
Sbjct: 25  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 82  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI AKA +  ++   +          D  + FL +L  F    EG++FY  FA 
Sbjct: 139 AVENIPSIRAKAEFCFKWIDEVEKIDRLESRSDR-RRFLLNLICFAACIEGLFFYGAFAY 197

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  
Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAG 257

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+ 
Sbjct: 258 AVDAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQ 315

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336


>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
 gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
          Length = 345

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 171/321 (53%), Gaps = 15/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ +
Sbjct: 25  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 82  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI AKA +  ++   +          D  + FL +L  F    EG++FY  FA 
Sbjct: 139 AVENIPSIRAKAEFCFKWIDEVEKIDRLESQSDR-RRFLLNLICFAACIEGLFFYGAFAY 197

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  
Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAG 257

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+ 
Sbjct: 258 AVDAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQ 315

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            +++  NFFE R + YQ   E
Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336


>gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
 gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
          Length = 346

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 173/320 (54%), Gaps = 14/320 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ +     N W   EV  Q DL   K +  LT  E   I+R + FFA+ +
Sbjct: 25  LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATGD 82

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGE----LFN 147
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L   + E E     F 
Sbjct: 83  SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDNYIPEPEERNAAFA 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI+ KA++ +++  ++        TK+  ++FL +L  F    EG++F+  FA 
Sbjct: 140 AVENIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAY 198

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDES HL F  +V+  ++ + P LW  E +++   M+ E
Sbjct: 199 VYFFRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEE 258

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E  +A + +  G  GL+     QY+ ++A+ R  ++G+   F   +NPF +M E+ 
Sbjct: 259 AIDAEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQ 316

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           D+++  NFFE RV+ YQ   
Sbjct: 317 DVQELTNFFERRVSAYQTAV 336


>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
 gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
          Length = 356

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 167/322 (51%), Gaps = 8/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   + +Y  A  N W   EV    DL     + G    ER +I+R + FFA+ +
Sbjct: 35  LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMGPA--ERHLIQRLVAFFATGD 92

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+VANN+VL++YRHL+ PE R YL RQ +EEA+H   +  ++ +   D  +    F    
Sbjct: 93  SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA + L++  T+++     G     Q FL +L  F    EG++FY  FA +  
Sbjct: 153 TIPSIRRKAEFCLRWQDTVAAIPRLDGPAHRRQ-FLLNLICFAACTEGLFFYGAFAYVYF 211

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F   VI+ ++ + P L+  E +     M+ EA  
Sbjct: 212 LRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEPELFDAELEAAVVEMIEEAVA 271

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+A+A + +  G  GL       Y+++ A++R  ++G+   +  T NP  +M E+ D+ 
Sbjct: 272 CEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMATRYGST-NPLSFM-ELQDIP 329

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE RV+ YQ G     D
Sbjct: 330 ELANFFERRVSAYQHGVSGTID 351


>gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 338

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 178/328 (54%), Gaps = 16/328 (4%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           R+L+   D+  L P++Y   +E++ +A  N W   EV +  DL    +    TD ER +I
Sbjct: 8   RLLDPGMDLT-LRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLAT---FTDSERHLI 63

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
            R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH    Q+ +T L    
Sbjct: 64  NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVH---VQFYLTLLDTYL 120

Query: 141 ----DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
               D  + F     +PSI  KA +  ++  T+        T +  + FL +L  F    
Sbjct: 121 PDPEDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACI 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +  L     + G+A    ++ RDES H+NF   V++ ++ E P L+  E
Sbjct: 180 EGLFFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDE 239

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    M+ EA   E+ +A +   +G  G+     + Y++++A++R  ++G+ P+   +
Sbjct: 240 LTEAVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGM-PVRYGS 298

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +NPF +M+ + D+++  NFFE R T YQ
Sbjct: 299 KNPFGFMA-LQDVQELTNFFERRPTAYQ 325


>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 339

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   +E Y SA  N W   EV    D+   +    +TD ER +++R + FFA+ +
Sbjct: 19  LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRK---MTDAERHLVQRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +YRH++ PE R YL RQ +EEA+H    Q+ +T L        D    F 
Sbjct: 76  SIVANNLVLNLYRHINAPEARMYLSRQLYEEALH---VQFYLTLLDTYIPDPEDRHRAFA 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA++ +++  ++ S      T+   + FL +L  F    EG++F+  FA 
Sbjct: 133 AVENIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAY 191

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +  L     + G+A    ++ RDES H+ F  +V++  + E P L+     +    M+ E
Sbjct: 192 VYFLRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E  +A + +  G  G++A    +Y++F A++R   +G+ P     +NPF +M ++ 
Sbjct: 252 AIACEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGM-PKRYGAKNPFSFM-DLQ 309

Query: 328 DLKKEKNFFETRVTEYQQG 346
           D+++  NFFE RV+ YQ G
Sbjct: 310 DVQEVTNFFERRVSAYQVG 328


>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces jumonjinensis]
          Length = 322

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 15/312 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        LT  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLTPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH    Q+ +T L        D    F 
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA 
Sbjct: 133 AVENIPSIREKAQFCFKWMDSVEKID-QLETQADRRRFLLNLICFAACIEGLFFYGAFAY 191

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML E
Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A   E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+ 
Sbjct: 252 AVEAELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQ 309

Query: 328 DLKKEKNFFETR 339
            +++  NFFE R
Sbjct: 310 GVQELTNFFERR 321


>gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
 gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
          Length = 339

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 174/318 (54%), Gaps = 8/318 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ Y +A  N W   E+  Q D+    SK  ++  ER +I R + FFA+ +
Sbjct: 18  LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F+   
Sbjct: 76  SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI  KA++  ++  ++ S +    T++  ++FL +   F    EG++F+  FA +  
Sbjct: 136 NIDSIKKKADFCFKWIDSIQSLT-RIETREQRRQFLLNQICFAACIEGLFFFAAFAYVYY 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES H+ F  + +  ++ E P L+ +E +Q+   ML EA  
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEMKQQVYDMLAEAIE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    NP P+M E+ D++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYN-VRNPLPFM-ELQDVQ 312

Query: 331 KEKNFFETRVTEYQQGAE 348
           +  NFFE RV+ YQ G +
Sbjct: 313 ELTNFFERRVSAYQVGVQ 330


>gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain
           [Streptomyces microflavus]
          Length = 321

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  E    +  V 
Sbjct: 75  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134

Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 135 NIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    Q++   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQEQVTAMLKEAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFAFM-ELQGVQ 311

Query: 331 KEKNFFETR 339
           +  NFFE R
Sbjct: 312 ELTNFFERR 320


>gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
 gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 339

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 171/318 (53%), Gaps = 8/318 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ Y +A  N W   E+  Q D++   SK  ++  ER +I R + FFA+ +
Sbjct: 18  LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHSK--MSPGERHLIHRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F    
Sbjct: 76  SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI  KA++  ++  ++ +      T++  ++FL +   F    EG++F+  FA +  
Sbjct: 136 NIDSIKKKADFCFKWIDSIQNLK-RIETREERRQFLLNQICFAACIEGLFFFAAFAYVYY 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES H++F  + ++ I+ E P L+  + +Q    ML EA  
Sbjct: 195 FRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKMKQDVYDMLAEAIE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + +  G  G++     QY+Q  A+   H++G+E  +    NP  +M E+ D++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYN-VRNPLSFM-ELQDVQ 312

Query: 331 KEKNFFETRVTEYQQGAE 348
           +  NFFE R + YQ G +
Sbjct: 313 ELTNFFERRASAYQVGVQ 330


>gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 339

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 169/318 (53%), Gaps = 8/318 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ Y +A  N W   E+  Q D+    SK  ++  ER +I R + FFA+ +
Sbjct: 18  LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F    
Sbjct: 76  SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI  KA++  ++  ++        T+   ++FL +   F    EG++F+  FA +  
Sbjct: 136 NIDSIKKKADFCFKWIDSIQDLK-RIETRAERRQFLLNQICFAACIEGLFFFAAFAYVYY 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES H+ F  + +  ++ E P L+  E +Q+   ML EA  
Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAIE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    NP P+M E+ D++
Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYN-VRNPLPFM-ELQDVQ 312

Query: 331 KEKNFFETRVTEYQQGAE 348
           +  NFFE RV+ YQ G +
Sbjct: 313 ELTNFFERRVSAYQVGVQ 330


>gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
 gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 341

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 184/332 (55%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+++R+     + + +L  +KY WA+  +     N W P EV M  D   +   +GLT 
Sbjct: 15  SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 72

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++  ++ 
Sbjct: 73  EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 132

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           S+  +  E+++M+R    + AK ++  +  + L+       T   ++  ++ +F   ++ 
Sbjct: 133 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA-------TNPIERNIIKAMFANQIL- 184

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +K E+P L+TK+
Sbjct: 185 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVKKESPELFTKD 244

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++   M  EA  +E A+         +GL +   ++Y++++A+ R  +IGL  L+   
Sbjct: 245 LEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRRIGLPTLYN-A 303

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           ++P  W+       ++K NFFE  VT Y +G+
Sbjct: 304 KHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 340

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 184/332 (55%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+++R+     + + +L  +KY WA+  +     N W P EV M  D   +   +GLT 
Sbjct: 14  SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++  ++ 
Sbjct: 72  EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           S+  +  E+++M+R    + AK ++  +  + L+       T   ++  ++ +F   ++ 
Sbjct: 132 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA-------TNPIERNIIKAMFANQIL- 183

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +K E+P L+TK+
Sbjct: 184 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVKKESPELFTKD 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++   M  EA  +E A+         +GL +   ++Y++++A+ R  +IGL  L+   
Sbjct: 244 LEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRRIGLPTLYN-A 302

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           ++P  W+       ++K NFFE  VT Y +G+
Sbjct: 303 KHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 334


>gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
 gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
          Length = 340

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 180/336 (53%), Gaps = 14/336 (4%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + NV+D+++     + + +L  +KY WA+  +    NN W P EV M  D+  +K+  
Sbjct: 10  DSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDVNDYKN-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT++E+    + L      +SL  NN++  +  ++++PE    L+RQ+FEEA+HS ++ 
Sbjct: 68  -LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEALHSQSYA 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++ S+  +  E+++++R    +  K +   +  Q L++          +  F++  F  
Sbjct: 127 VMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAANP-------TEHNFVKACFAN 179

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            ++ EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++ E P L
Sbjct: 180 QIL-EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLRKERPDL 238

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T + +++   M  EA  LE  +         +GL     EQY++F+A+ R   +G E L
Sbjct: 239 FTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLTAVGFEKL 298

Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           +  T NP  W+ +      +K NFFE  VT Y +G+
Sbjct: 299 YNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333


>gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas
           denitrificans DSM 1251]
 gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 340

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 180/337 (53%), Gaps = 16/337 (4%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E   NV+D+R+     + + +L  +KY WA+  +    NN W P EV M  D++ +K   
Sbjct: 10  ESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVSDYKQ-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            +TD E+    + L      +SL  NNI+  I  ++++PE    L+RQA+EEA+HS ++ 
Sbjct: 68  -ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEALHSQSYA 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-SPSFTTGTKDADQEFLQDLFV 191
            ++ ++  +  E++ ++R    +  K +   +  + LS +P+        +  F++  F 
Sbjct: 127 VMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELSKNPT--------EHNFVKACFA 178

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+GFA I +L R+ KM+G A+  ++I RDE  HL    ++IN ++ E P 
Sbjct: 179 NQIL-EGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINSLRKERPD 237

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+ ++ +++   M  EA  LE+A+         +GL     EQY+Q++A+ R   +G   
Sbjct: 238 LFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRLTSVGFAK 297

Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           L+  T NP  W+ +      +K NFFE  V  Y +G+
Sbjct: 298 LYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGS 333


>gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 319

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 163/296 (55%), Gaps = 16/296 (5%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A NN+W+P E  + +D   +  K  L D ER  +   +GFF+S+E  V  NI L I 
Sbjct: 37  YTKAKNNYWIPEEYDLANDKHEFYEK--LNDIERHYMLHTVGFFSSAEGWVGQNI-LEIS 93

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
           + + N E R +L  Q  EE  H  TF+YI+  L L   E++ M+  V  I  KA++ ++ 
Sbjct: 94  KRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVKR 153

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              L            ++  ++D+FV+Y + EG++F++GF   L+ GR   +  +A   +
Sbjct: 154 AMALCEEP-------TEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALVR 206

Query: 226 YIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           +I++DE+ HL FGI ++N+ +K +N +    +++ K R ++ EA  +E  YA   MP+  
Sbjct: 207 WILKDETRHLAFGIYLLNELLKDKNKN----DYKDKFRVLMEEAVDIETEYARVAMPEKI 262

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           +GL+  +   Y++++A+RR   +G + ++   +NP  W++   DL    NFFE +V
Sbjct: 263 IGLSFETYTSYVKYLADRRMRSLGFDAIYG-QKNPMKWLTTQTDLPDLTNFFEAKV 317


>gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor
           sp. SB155-2]
 gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor
           sp. SB155-2]
          Length = 341

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 170/317 (53%), Gaps = 15/317 (4%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +L  +KY WA+  +     N W P EV M  D   +K    LTD E+L   + L      
Sbjct: 32  ELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDARDYKL---LTDAEKLAYDKVLAQLIFM 88

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +SL  NN++  +  +++ PE    L+RQAFEEA+HS ++  ++ S+  +  E++ ++RE 
Sbjct: 89  DSLQTNNLIDNVNPYITAPEINLILVRQAFEEALHSQSYAVMVDSISQNTDEIYELWRED 148

Query: 153 PSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             +  K ++ A  Y +  ++PS        D+  ++ +F   ++ EG++FY+GF  + +L
Sbjct: 149 LQLKQKNDYIAHVYEELAANPS--------DENIVKAMFANQIL-EGIYFYSGFTYMYTL 199

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R+ KM+G A+  ++I RDE  HL    ++IN +K E P L+TKE       M   A  L
Sbjct: 200 ARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTVKKERPELFTKELIDDVYKMFEGAVDL 259

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E ++         +GL     EQY++++A+ R  ++GLEP++   E+P  W+ +      
Sbjct: 260 ETSWGKYITQGQILGLTDEIIEQYIKYLADDRLKRVGLEPMYN-VEHPIKWVDDFSKFND 318

Query: 332 EK-NFFETRVTEYQQGA 347
           +K NFFE  VT Y +G+
Sbjct: 319 QKTNFFEGNVTNYSKGS 335


>gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
           NBC37-1]
 gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 339

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 168/317 (52%), Gaps = 15/317 (4%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +L  +KY WA+  +    NN W P EV M  D+  +K    LTD E+    + L      
Sbjct: 30  ELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKR---LTDAEKQAYDKVLAQLIFM 86

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +SL  NNI+  +   ++ PE    L+RQAFEEA+HS ++  ++ S+  +  E++ ++R  
Sbjct: 87  DSLQTNNIIDNLNPFITAPEVNLILVRQAFEEALHSQSYAVMVDSISTNSEEIYELWRRD 146

Query: 153 PSITAKANWALQYTQTLS-SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             + +K +   +  + LS +P+        D+  ++ +F   ++ EG++FY+GF  + +L
Sbjct: 147 MKLKSKNDAIAKVYEELSENPT--------DENIVKAMFANQIL-EGIYFYSGFTYLYTL 197

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R++KM+G A+  ++I RDE  HL    ++IN  K E P L+TKE       M  +A  L
Sbjct: 198 ARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINATKRERPELFTKELIDDVYQMFRDAVKL 257

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +         +GL     EQY+Q++A++R H +GLE ++   E+P  W+        
Sbjct: 258 ECEWGTYITQGQILGLTNEIIEQYIQYLADKRLHAVGLEKIYN-VEHPIKWVDNFSQFND 316

Query: 332 EK-NFFETRVTEYQQGA 347
           +K NFFE  VT Y +G+
Sbjct: 317 QKTNFFEGNVTNYSKGS 333


>gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 288

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H    Q+
Sbjct: 1   MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALH---VQF 57

Query: 134 IITSLGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
            +T L        D  + F     +PSI  KA + L++  ++   +    T++  + FL 
Sbjct: 58  YLTLLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLL 116

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +L  F    EG++F+  FA +  L     + G+A    ++ RDES H+ F  + I   + 
Sbjct: 117 NLICFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQ 176

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+    Q     M+ EA   E  +A + +  G  GL+     QY++++A++R   +
Sbjct: 177 EEPDLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTML 236

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           GL P+F+  +N  P+M ++ D+++  NFFE RV+ YQ
Sbjct: 237 GLAPVFR-VKNSLPFM-DLQDVQELTNFFERRVSAYQ 271


>gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
          Length = 340

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 175/333 (52%), Gaps = 16/333 (4%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           NV+D+++     + + +L  +KY WA+  +    NN W P EV M  D+  +K    LTD
Sbjct: 14  NVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKQ---LTD 70

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEEA+HS ++  ++ 
Sbjct: 71  AEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130

Query: 137 SLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           S+  +  E+++++R    +  K +  A  Y +   +P+        D  F++  F   ++
Sbjct: 131 SISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELAKNPT--------DSNFVKACFANQIL 182

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++ E P L+T 
Sbjct: 183 -EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLRKERPDLFTD 241

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +     M  EA  LE  +         +GL     EQY+Q++A+ R + +G + L+  
Sbjct: 242 ELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRLNSVGFDKLYNV 301

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           + NP  W+ +      +K NFFE  VT Y +G+
Sbjct: 302 S-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333


>gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
 gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
          Length = 341

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 183/333 (54%), Gaps = 15/333 (4%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+++++     + + +L  +KY WA+  +     N W P EV M  D   +   +GLT 
Sbjct: 15  SVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 72

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++  ++ 
Sbjct: 73  EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 132

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           S+  +  E++ M+R    + +K ++  + Y Q  ++P+        ++  ++ +F   ++
Sbjct: 133 SISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLATNPT--------ERNIIKAMFANQIL 184

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +L R+ KM+G A+  ++I RDE  HL    ++IN  K E+P  +TK
Sbjct: 185 -EGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSTKKESPEFFTK 243

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           + +++   M  EA  +EIA+         +GL A   ++Y++++A+ R  ++GL P+   
Sbjct: 244 DLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRLRRVGL-PVLYN 302

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            ++P  W+       ++K NFFE  VT Y +G+
Sbjct: 303 AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
          Length = 348

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E + +V D+++     + +  L  +KY WA+  + +   N W P EV +  D   +   +
Sbjct: 18  ESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLNGDKRDYA--D 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT  E+    R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++ 
Sbjct: 76  GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 135

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++ S+  +  E++ M+R    + +K +        +++     G +  +Q  L+ LF  
Sbjct: 136 VMVESISANTDEIYEMWRVDMQLRSKND-------HIANVYIELGKQPTEQNLLKALFAN 188

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            ++ EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL     +IN ++ E PHL
Sbjct: 189 QIL-EGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQMINALRKEQPHL 247

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T   +++   M  +A  +E  +         +GL A    +Y+Q++A+ R   +GL  +
Sbjct: 248 FTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLADMRLRAVGLREI 307

Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           + +++NP  W+ +      +K NFFE +VT Y +G+
Sbjct: 308 Y-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS 342


>gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate
           division TM7 single-cell isolate TM7c]
          Length = 277

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 141/262 (53%), Gaps = 3/262 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           QL P++Y WA+  Y  A  N W P EV +  DLA +K    LT+DE+  +K  + +   +
Sbjct: 19  QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKK---LTEDEKNALKTVISYLNPN 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E L+  ++   IY  ++  EC  YL +Q +EEA H  TF+YII +   +  E++      
Sbjct: 76  ELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAGWGK 135

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            S+  KA +  +Y   +        T +  ++F+++L  + +V EG+WFY+GF   +S  
Sbjct: 136 KSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGMSFR 195

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R N +  +     ++ RDE+LHL FGI+++  I  ENP L   EF  + R ++ +A  LE
Sbjct: 196 RRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAVELE 255

Query: 273 IAYAHETMPKGFVGLNAPSCEQ 294
            AY  + +P G +GLNA    Q
Sbjct: 256 EAYNRDMLPNGILGLNADYVNQ 277


>gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 343

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 176/332 (53%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+++R+     + + +L  +KY WA+  +     N W P EV M  D   +   +GLT 
Sbjct: 17  SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYS--DGLTP 74

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++  ++ 
Sbjct: 75  EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 134

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           S+  +  E++ M+R    + +K ++     + LS           +   L+ +F   ++ 
Sbjct: 135 SISANTDEIYEMWRTDIQLKSKNDYIANVYEELS-------VNPTESILLKAMFANQIL- 186

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN ++ E PHL+TK+
Sbjct: 187 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSLRKEMPHLFTKD 246

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             ++   M  EA  +E  +         +GL +    +Y++++A+ R  ++GL  L+   
Sbjct: 247 LIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLTRVGLPALYN-A 305

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            +P  W+       ++K NFFE  VT Y +G+
Sbjct: 306 RHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 337


>gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
 gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 180/333 (54%), Gaps = 16/333 (4%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+D+++     + + +L  +KY WA+  +    NN W P EV M  D   +K    LT+
Sbjct: 14  HVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDAVDYKY---LTE 70

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEEA+HS ++  ++ 
Sbjct: 71  MEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130

Query: 137 SLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           S+  +  E+++++R+   +  K +  A +Y +  + PS        +  F++  F   ++
Sbjct: 131 SISQNSEEIYDLWRKDMMLKTKNDSIAARYDELANDPS--------ESAFVKACFANQIL 182

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T+
Sbjct: 183 -EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTLRRERSDLFTE 241

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E  ++   M  +A  LE A+         +GL     EQY+Q++A++R   +GL+PL+  
Sbjct: 242 ELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLTAVGLKPLYNV 301

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           + +P  W+ +      +K NFFE  VT Y +G+
Sbjct: 302 S-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS 333


>gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens SM101]
 gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens SM101]
          Length = 344

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 175/339 (51%), Gaps = 19/339 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  +K    LT
Sbjct: 15  IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 72  KEEKAAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S+   E   E+   +++   +  +  +    Y   L   S         + F++ +   
Sbjct: 131 DSICSPEERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSI--------ENFIKSVMAN 182

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K E P +
Sbjct: 183 YIL-EGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEIPEV 241

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +TKE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   IGLEPL
Sbjct: 242 FTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAIGLEPL 301

Query: 313 FK-YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           F+ Y ENP PW+    D  + K +FFE + T Y +   L
Sbjct: 302 FEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340


>gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens str. 13]
 gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens ATCC 13124]
 gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
 gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium
           perfringens str. 13]
 gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens ATCC 13124]
 gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
          Length = 344

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 172/337 (51%), Gaps = 15/337 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  +K    LT
Sbjct: 15  IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 72  KEEKTAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYV 194
            S+   E       R       K +  L          +    +D+  E F++ +   Y+
Sbjct: 131 DSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFIKSVMANYI 184

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K E P ++T
Sbjct: 185 L-EGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEIPEVFT 243

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           KE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   IGLEPLF+
Sbjct: 244 KELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAIGLEPLFE 303

Query: 315 -YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            Y ENP PW+    D  + K +FFE + T Y +   L
Sbjct: 304 GYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340


>gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
 gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
          Length = 326

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 28/329 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+K+   WE Y  +  + W   E+ +  DL  W +K  L DDER  IK
Sbjct: 8   ILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTTK--LNDDERYFIK 65

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE 
Sbjct: 66  HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEA 125

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF      P+I  KA+WALQ+   + SPSF            + L  F  V EG++
Sbjct: 126 EKDKLFKAIENFPAIKKKADWALQW---IESPSFA-----------ERLIAFAAV-EGIF 170

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE +H +F       + + N HL  K  +++
Sbjct: 171 FSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFA------VHLHNNHLVNKVPKER 224

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G E  +  + NPF
Sbjct: 225 IRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-NPF 283

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +M ++I L+ + NFFE RV+EYQ+   L
Sbjct: 284 DFM-DMISLQGKTNFFEKRVSEYQKAGVL 311


>gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium
           cryptum JF-5]
 gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5]
          Length = 338

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 33/327 (10%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +L+    HW+P EVP+ DD+  W     LT  ER ++ +   FF  ++  
Sbjct: 31  PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQADVE 88

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 89  V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y Q  S         D+  E  + L  F    EG+  +  FA +L+ 
Sbjct: 147 MKD-------KYDYMQEFSV--------DSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 191

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266
            R NKM G+ +   + +RDESLH N  I +      ENP +WT+E +++     +  + H
Sbjct: 192 PRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDH 251

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+    +     GL A   ++Y+++IA+RR  Q+GL PLF   +NP PW+ E+
Sbjct: 252 EDAFIDLAFEFGAVE----GLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEM 307

Query: 327 IDLKKEKNFFETRVTEYQQGAEL-KWD 352
           ++  +  NFFE R TEY + +    WD
Sbjct: 308 LNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
 gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
          Length = 338

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 33/327 (10%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +L+    HW+P EVP+ DD+  W     LT  ER ++ +   FF  ++  
Sbjct: 31  PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQADVE 88

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 89  V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y Q  S         D+  E  + L  F    EG+  +  FA +L+ 
Sbjct: 147 MKD-------KYDYMQEFSV--------DSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 191

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266
            R NKM G+ +   + +RDESLH N  I +      ENP +WT+E +++     +  + H
Sbjct: 192 PRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDH 251

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+    +     GL A   ++Y+++IA+RR  Q+GL PLF   +NP PW+ E+
Sbjct: 252 EDAFIDLAFEFGAVE----GLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEM 307

Query: 327 IDLKKEKNFFETRVTEYQQGAEL-KWD 352
           ++  +  NFFE R TEY + +    WD
Sbjct: 308 LNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           hepaticus ATCC 51449]
 gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 349

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 177/337 (52%), Gaps = 15/337 (4%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E   +V D+++     + +  L  +KY WA+  +     N W P EV M  D   +    
Sbjct: 19  ESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKRDYNG-- 76

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQA+EEA+HS ++ 
Sbjct: 77  GLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYA 136

Query: 133 YIITSLGLDEGELFNMYREVPSITAK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            ++ S+  +  E++NM+R    + +K  N A  Y +   +P+        +Q  L+ +F 
Sbjct: 137 VMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELAKNPN--------EQNLLKAMFA 188

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++I+ ++ E  H
Sbjct: 189 NQIL-EGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISSLRKEQGH 247

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+T   +++   M  +A  +E  +         +GL +    +Y+Q++A+ R   +GL  
Sbjct: 248 LFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARLKAVGLPQ 307

Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           L+  ++NP  W+ +      +K NFFE +VT Y +G+
Sbjct: 308 LYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS 343


>gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K VN DDKR++N  +DVNQL P KY WAWE +L+A  NHW P ++ M  D+  +  K  L
Sbjct: 46  KPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHHK--L 103

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T +ER + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+ T+Q+ 
Sbjct: 104 TLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHC 163

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I ++GLD+ E++N YR VP I  K   A +   ++         +D  + FL     F  
Sbjct: 164 IETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFAG 223

Query: 195 VFEGMWFYTGFAQILSL 211
           +FEG+WFY GF+ I +L
Sbjct: 224 IFEGVWFYNGFSPIFAL 240


>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
           T2Bo]
 gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
           [Babesia bovis]
          Length = 339

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 161/321 (50%), Gaps = 29/321 (9%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N L P+KY   WE Y  A  + W   E+ +  DL  W +   LT+ E   IK  L FFA+
Sbjct: 31  NGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEHHFIKNVLAFFAA 87

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+ +V  N+ L   + +  PE + +   Q   E +HS T+  +I     DE E   ++R 
Sbjct: 88  SDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYIRDEAEKDRLFRA 147

Query: 152 VPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           + +I A   KA WA ++                D++   +  V Y   EG++F   F  I
Sbjct: 148 IETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAVEGIFFSGSFCAI 193

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L +   M G+    + I RDE LH +FG  + +++K + P        +  + ++ EA
Sbjct: 194 FWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLP-------AECVQQIIKEA 246

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E  +  +++P   +G+N+    QY++F+A+R    +G+ P++K T+NPF WM E+I 
Sbjct: 247 VAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-TKNPFEWM-ELIS 304

Query: 329 LKKEKNFFETRVTEYQQGAEL 349
           ++ + NFFE RV EYQ+   L
Sbjct: 305 VQGKTNFFEKRVGEYQKSGIL 325


>gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella
           succinogenes DSM 1740]
          Length = 341

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 19  VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           V+++++     + + +L  +KY WA+  +     N W P EV M  D   +    GLT  
Sbjct: 16  VNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDKRDYNG--GLTPA 73

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+L   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++  ++ S
Sbjct: 74  EKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVES 133

Query: 138 LGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           +  +  E++ M+R    + +K +  A  Y +   +P+        D   L+ +F   ++ 
Sbjct: 134 ISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPT--------DSAMLKAMFANQIL- 184

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN +K E P L+TK 
Sbjct: 185 EGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALKKERPDLFTKS 244

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++   M  +A  +E A+         +GL +    +Y+Q++A+ R  ++G+ P+    
Sbjct: 245 LEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKRVGM-PILYNA 303

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           ++P  W+ +     ++K NFFE  VT Y +G+
Sbjct: 304 KHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           mustelae 12198]
 gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           mustelae 12198]
          Length = 344

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 180/333 (54%), Gaps = 15/333 (4%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+D+++     + +  L  +KY WA++ + +   N W P EV M +D   +   N LT 
Sbjct: 19  SVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDKRDYN--NLLTA 76

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+L   R L      +SL  NN++  +  ++++PE    L+RQA+EEA+HS ++  ++ 
Sbjct: 77  QEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYAVMVE 136

Query: 137 SLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           S+  +  E+++M+R    + +K ++ A  Y +   +P+        ++  ++ +F   ++
Sbjct: 137 SISANTDEIYDMWRVDMQLKSKNDYIANVYMKLAQNPT--------ERNIVKAMFANQIL 188

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GFA   +L    KM+G ++  ++I RDE  HL    ++I  +K E P L+ K
Sbjct: 189 -EGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQNMIRTLKKERPDLFDK 247

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           + +++   M   A  +E A+         +GL      QY+Q++A++R  ++G+  L+  
Sbjct: 248 DLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLADQRLSKVGMPKLYN- 306

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            E+P  W+ +     +++ NFFE +VT Y +G+
Sbjct: 307 VEHPIKWVEQYASFNEQRTNFFEAKVTNYAKGS 339


>gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum]
          Length = 397

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W+  E+ +  D+  W  +  L DDER  I   L FFA+S+
Sbjct: 79  LFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWSDR--LNDDERYFISHVLAFFAASD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E VHS T+  +I +   D  +   LF+   
Sbjct: 137 GIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIKDPKQRTYLFDAID 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ +            D +  F Q L  F  V EG++F   FA I  
Sbjct: 197 TIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-EGIFFSGSFASIFW 243

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   + N       HL  +  QQ  + ++ EA  
Sbjct: 244 LKKRGLMPGLSFSNELISRDEGLHTDFACLLFN-------HLNNRPSQQAVQDIIVEAVG 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G  P F    NPF +M E I L 
Sbjct: 297 IEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLG-NPKFYNATNPFDFM-ESISLA 354

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 355 GKTNFFEKRVGDYQKAG 371


>gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella
           virus 1]
 gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to
           tobacco RR small subunit, corresponds to Swiss-Prot
           Accession Number P49730 [Paramecium bursaria Chlorella
           virus 1]
          Length = 324

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 160/319 (50%), Gaps = 28/319 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   W+ Y  A    W   EVP+  D+  W+ K  L DDER  IK  LGFFA S+ 
Sbjct: 19  FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151
           +V  N+       ++ PE RQ+   Q F E++HS  +  +I +L  DE    ELF+    
Sbjct: 77  IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++ +   S                +  V +V  EG+ F   F  I  L
Sbjct: 137 IPAVHNKAKWAQKWLEPGKS--------------FAERLVAWVCVEGILFSGSFCAIFWL 182

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++++ + P        +  + ++ EA   
Sbjct: 183 RNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF-------ETVKQIITEAVEN 235

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+NA    QY++F+A+R    +G E ++  ++NPF +M E+I L+ 
Sbjct: 236 EKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN-SKNPFAFM-ELISLQG 293

Query: 332 EKNFFETRVTEYQQGAELK 350
           + NFFE RV++YQ+   +K
Sbjct: 294 KTNFFEKRVSDYQRPGVMK 312


>gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980]
 gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 407

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 167/345 (48%), Gaps = 35/345 (10%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+ P +A E  +  +  R +        L P+KY   W+ Y  A  + W   E+ +  DL
Sbjct: 63  GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E 
Sbjct: 115 HDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172

Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS T+  +I +   ++ +   LFN    +P I  KA+WA+++ Q            D +
Sbjct: 173 IHSETYSLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKN 220

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 221 STFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLF 279

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           +       HL  +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R
Sbjct: 280 S-------HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADR 332

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               +G + ++K + NPF +M E I L  + NFFE RV +YQ+  
Sbjct: 333 LLVTLGNDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAG 375


>gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 409

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 165/344 (47%), Gaps = 27/344 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  + A E +  + D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL 
Sbjct: 61  IKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLSKDLH 120

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W +K  L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +
Sbjct: 121 DWSNK--LNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENI 178

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   +  +   LFN    +P I  KA+WAL++              D D 
Sbjct: 179 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWIS------------DKDA 226

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 227 SFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 285

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R 
Sbjct: 286 -------HLNNRPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFVADRL 338

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +G + +++ T NPF +M E I L  + NFFE RV EYQ+  
Sbjct: 339 LVALGNDKIYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAG 380


>gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
 gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
          Length = 347

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 167/319 (52%), Gaps = 16/319 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D+NQ+   KY WA + + +  +N W P EV M  D   +     L+  E++   R L   
Sbjct: 38  DLNQI---KYQWAHKIWKTMLHNTWFPEEVSMHGDKTHYLK---LSTQEKIGYDRALAQL 91

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +SL  NN++  I   +++PE    L+RQA+EEA+HSH++  ++ S+  +  E++ M+
Sbjct: 92  IFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVMVESISANSDEIYEMW 151

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R   ++  K +   Q    L+           ++  L+ L V   + EG++FY+GF+   
Sbjct: 152 RTDEALKNKNDCVAQVYMDLAHTQ-------TERNLLKAL-VANQILEGIYFYSGFSFFY 203

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +L R+ KM+G A+  ++I RDE  HL     +I+ +K E P L++K+  ++   M  EA 
Sbjct: 204 ALARSGKMLGSAQMIRFIQRDEVTHLALFQSMIHTLKKERPDLFSKDLVEEILEMFKEAV 263

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            LE  +         + LN  +   Y++++A+ R H IGL P   +T++P  W+ +    
Sbjct: 264 DLESTWGRVITQGEILDLNPVTLRAYIEYLADTRLHAIGL-PKIYHTKHPMRWVDQFSSF 322

Query: 330 KKEK-NFFETRVTEYQQGA 347
             ++ NFFE RV+ Y +G+
Sbjct: 323 NSQRSNFFEARVSNYSKGS 341


>gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 339

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 32/321 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +L+    HW+P EVP+ DD+  W     L + E+ ++ +   FF  S+  
Sbjct: 27  PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWH--RVLNEGEQHLVTQIFRFFTQSDVE 84

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + Y++ +LG+ E E   F  Y+E
Sbjct: 85  V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y QT         T D+  E  + L  F    EG+  +  FA +L+ 
Sbjct: 143 MKD-------KYDYMQTF--------TVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 187

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTML-H 266
            R NK+ G+ +   + +RDE+LH    I +      ENP LWT++ + +     RT++ H
Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEH 247

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+    +     GLNA   + Y+ FIA+RR  Q+GLEP++  T NP PW+ ++
Sbjct: 248 EEAFIDLAFEMGAVE----GLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDM 303

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           ++  +  NFFE R TEY + +
Sbjct: 304 LNAVEHTNFFENRATEYSRAS 324


>gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 389

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 27/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N LT DE+  I   L FFA+S+
Sbjct: 69  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQFFISHILAFFAASD 126

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 127 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIE 186

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 187 TIPCIRKKADWAIRWIQ------------DKDSSFAQRLVAFAAV-EGIFFSGAFASIFW 233

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + + HL  +  +Q  + ++ +A  
Sbjct: 234 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKGRASKQVIQDIITDAVT 286

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+NA   +QY++F+A+R    +G E ++K + NPF +M E I L 
Sbjct: 287 IEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALGNEKVYK-SANPFDFM-ENISLG 344

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV +YQ+   L
Sbjct: 345 GKTNFFEKRVGDYQKAGVL 363


>gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora]
          Length = 410

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 166/344 (48%), Gaps = 35/344 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L P +A E  +  + +R +        L P+KY   W+ Y  A  + W   E+ +  DL 
Sbjct: 70  LKPEEAAEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N LTDDER  +   L FFA+S+ +V  N+V      +  PE R +   Q   E +
Sbjct: 122 DWN--NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   +  +   LFN    +P I  KA+WAL++    SS            
Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSST----------- 228

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 229 -FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 286

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  HL  +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R 
Sbjct: 287 -------HLNNRPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRL 339

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +G E +++ T NPF +M E I L  + NFFE RV +YQ+  
Sbjct: 340 LVALGNEKVYRST-NPFDFM-ENISLGGKTNFFEKRVADYQKAG 381


>gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
 gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
          Length = 339

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 32/321 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +L+    HW+P EVP+ DD+  W     L + E+ ++ +   FF  S+  
Sbjct: 27  PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWH--RVLNEGEQHLVTQIFRFFTQSDVE 84

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + Y++ +LG+ E E   F  Y+E
Sbjct: 85  V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y QT         T D+  E  + L  F    EG+  +  FA +L+ 
Sbjct: 143 MKD-------KYDYMQTF--------TVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 187

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTML-H 266
            R NK+ G+ +   + +RDE+LH    I +      ENP LWT++ + +     RT++ H
Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEH 247

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+    +     GLNA   + Y+ FIA+RR  Q+GLEP++  T NP PW+ ++
Sbjct: 248 EEAFIDLAFEMGAVE----GLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDM 303

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           ++  +  NFFE R TEY + +
Sbjct: 304 LNAVEHTNFFENRSTEYSRAS 324


>gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 324

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 28/319 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   W+ Y  A    W   EVP+  D+  W+ K  L DDER  IK  LGFFA S+ 
Sbjct: 19  FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151
           +V  N+       ++ PE RQ+   Q F E++HS  +  +I +L  DE    ELF+    
Sbjct: 77  IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++ +   S                +  V +V  EG+ F   F  I  L
Sbjct: 137 IPAVHNKAKWAQKWLEPGKS--------------FAERLVAWVCVEGILFSGSFCAIFWL 182

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++++ + P        +  + ++ EA   
Sbjct: 183 RNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF-------ETVKQIITEAVEN 235

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+N+    QY++F+A+R    +G E ++  ++NPF +M E+I L+ 
Sbjct: 236 EKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-SKNPFAFM-ELISLQG 293

Query: 332 EKNFFETRVTEYQQGAELK 350
           + NFFE RV++YQ+   +K
Sbjct: 294 KTNFFEKRVSDYQRPGVMK 312


>gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1]
          Length = 399

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 158/319 (49%), Gaps = 27/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N LT DE+  I   L FFA+S+
Sbjct: 79  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQYFISHILAFFAASD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   D  +   LFN   
Sbjct: 137 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRTYLFNAVD 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 197 TIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV-EGIFFSGAFASIFW 243

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F         + + HL  +  +Q  + ++ +A  
Sbjct: 244 LKKRGLMPGLSFSNELISRDEGLHTDFAC-------LLHSHLKGRASKQMIQDIITDAVS 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G E ++K T NPF +M E I L 
Sbjct: 297 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYKST-NPFDFM-ENISLG 354

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV +YQ+   L
Sbjct: 355 GKTNFFEKRVADYQKAGVL 373


>gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 336

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 164/342 (47%), Gaps = 27/342 (7%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P++   +   V ++ +L      + L P+KY   W  Y  A  + W   EV +  D   W
Sbjct: 2   PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           + +  LTDDER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS
Sbjct: 62  EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119

Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  +I +   D  E   LF+    VP I  KA+WAL++              D    F
Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWIS------------DKKSSF 167

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
            + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 168 GERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTLL 226

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
                    K      + ++HEA  +E  ++ E++P   +G+NA   +QY++F+A+R   
Sbjct: 227 N-------NKPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           ++G+ P      NPF +M ++I L+ + NFFE RV EYQ+  
Sbjct: 280 ELGM-PKKYGVGNPFDFM-DMISLQGKTNFFEKRVGEYQKSG 319


>gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
 gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
          Length = 407

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 166/345 (48%), Gaps = 35/345 (10%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+ P +A E  +  +  R +        L P+KY   W+ Y  A  + W   E+ +  DL
Sbjct: 63  GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E 
Sbjct: 115 HDWNER--LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172

Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS T+  +I +   ++ +   LFN    +P I  KA+WA+++ Q            D +
Sbjct: 173 IHSETYSLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKN 220

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 221 STFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLF 279

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           +       HL  +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R
Sbjct: 280 S-------HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADR 332

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               +G +  +K + NPF +M E I L  + NFFE RV +YQ+  
Sbjct: 333 LLLSLGNDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAG 375


>gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
 gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
          Length = 342

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 172/320 (53%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA   Y +  NN W+P E+ +Q+D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWARLIYRTMLNNFWIPEEISLQEDV---KQFPYLTDGERNAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++   +    +++++RE   
Sbjct: 89  SENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPVTRDRIYDIWREDKY 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S        + +D+ F++ +F  Y++ EG++FY+GF+   +L R 
Sbjct: 148 LLERNKFIANIYQRFSD-------EPSDENFVRVVFANYIL-EGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    +++ ++++E   ++TK  +++ R M+      EIA
Sbjct: 200 GKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEELREMMRTGVEHEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +G+N    +QY+++++N+R   +GLE L+ + T++P  W+    ++   K
Sbjct: 260 WGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHPMEWIESFSNINSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAVFDFD 339


>gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 331

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 159/314 (50%), Gaps = 15/314 (4%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK K  L + E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKIK--LLNVEKNLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             NN  +  Y ++  P E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF++   +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLEDE 238

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V GL+A     Y+++IANRR  Q+GL+P++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           acridum CQMa 102]
          Length = 411

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 27/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDE+  I   L FFA+S+
Sbjct: 90  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 147

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 148 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 207

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 208 TIPCIRKKADWAIRWIQ------------DKESTFAQRLVAFAAV-EGIFFSGAFASIFW 254

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + + HL  +  +Q    ++ +A  
Sbjct: 255 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKNRASKQIIHDIITDAVA 307

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G E ++K T NPF +M E I L 
Sbjct: 308 IEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-TSNPFDFM-ENISLG 365

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV +YQ+   L
Sbjct: 366 GKTNFFEKRVGDYQKAGVL 384


>gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
 gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
          Length = 414

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  + DDE+  I   L FFA+S+
Sbjct: 93  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 150

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 151 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAID 210

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL            T   D    F   L  F VV EG++F   FA I  
Sbjct: 211 TIPCIRKKADWAL------------TWITDKKSTFATRLVAFAVV-EGIFFSGAFASIFW 257

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  +Q  + ++ +A  
Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQTVQDIVTDAVN 310

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P G +G+NA   +QY++F+A+R    +G E ++K T NPF +M E I L 
Sbjct: 311 IEQEFLTEALPCGLLGMNATLMKQYIEFVADRLLVALGNEKVYKAT-NPFDFM-ENISLG 368

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 369 GKTNFFEKRVADYQKAG 385


>gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 414

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 27/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDE+  I   L FFA+S+
Sbjct: 93  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 150

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 151 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 210

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 211 TIPCIRKKADWAIRWIQ------------DKESTFAQRLVAFAAV-EGIFFSGAFASIFW 257

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + + HL  +  +Q    ++ +A  
Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKNRASKQVIYDIITDAVA 310

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G E ++K T NPF +M E I L 
Sbjct: 311 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-TSNPFDFM-ENISLG 368

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV +YQ+   L
Sbjct: 369 GKTNFFEKRVGDYQKAGVL 387


>gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           centenum SW]
 gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum
           centenum SW]
          Length = 322

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 23/322 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +L+    HW+P EVP+ DD+  W+ K  LT+ ER ++ +   FF  ++  
Sbjct: 14  PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQK--LTEAERNLLTQIFRFFTQADVE 71

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V NN  +  Y  +  P E    L   +  E VH   + +++ ++G+ E E   F  Y+E+
Sbjct: 72  V-NNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIEYSAFLRYKEM 130

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q  +         D+ ++  + L VF    EG+  +  FA +++  
Sbjct: 131 KD-------KYDYMQGFNV--------DSLEDIAKTLAVFGAFTEGLQLFASFAILMNFP 175

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    I +      ENP +WT+ FQ++           E
Sbjct: 176 RFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELTVCCETIVHHE 235

Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V G+ A   ++Y+++IA+RR  Q+GLEP+++  +NP PWM  +++  +
Sbjct: 236 DAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLPWMDAILNGIE 295

Query: 332 EKNFFETRVTEYQQGAEL-KWD 352
             NFFE R TEY + A    WD
Sbjct: 296 HTNFFENRATEYSKAATRGTWD 317


>gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Gambia94/24]
          Length = 341

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL ANN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
 gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
          Length = 341

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A++    + P++Y   WE Y  A  + W   EV +  D+  W++   LTD E+  I 
Sbjct: 21  LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  
Sbjct: 78  HVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFLKDSK 137

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I+ KA W L + Q  S  SF                V +   EG++
Sbjct: 138 EKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACVEGIF 183

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++ + P        +K
Sbjct: 184 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP-------LEK 236

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R    +G E  +K  ENPF
Sbjct: 237 VYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERRYK-AENPF 295

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E I L+ + NFFE RV EYQ+ +
Sbjct: 296 DWM-EFISLQGKTNFFEKRVGEYQKAS 321


>gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 329

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 161/314 (51%), Gaps = 15/314 (4%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L++ E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             NN  +  Y ++  P E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLEFEES---------KKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V GL+A     Y+++IANRR  Q+GL+ ++   +NP PW+ E+++  +  
Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate
           reductase [Arabidopsis thaliana]
 gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A;
           AltName: Full=Ribonucleoside-diphosphate reductase R2A
           subunit; Short=AtRNR2; Short=Protein R2at; AltName:
           Full=Ribonucleotide reductase small subunit A
 gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
           thaliana]
          Length = 341

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A++    + P++Y   WE Y  A  + W   EV +  D+  W++   LTD E+  I 
Sbjct: 21  LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  
Sbjct: 78  HILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSK 137

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I+ KA W L + Q  S  SF                V +   EG++
Sbjct: 138 EKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACVEGIF 183

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++ + P        +K
Sbjct: 184 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPL-------EK 236

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R    +G E  +K  ENPF
Sbjct: 237 VYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-AENPF 295

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E I L+ + NFFE RV EYQ+ +
Sbjct: 296 DWM-EFISLQGKTNFFEKRVGEYQKAS 321


>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 399

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 156/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+S+V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori J99]
 gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
           pylori J99]
 gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
           pylori 908]
 gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
           pylori 2018]
 gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
           pylori 2017]
          Length = 341

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL ANN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
 gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
          Length = 419

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 152/318 (47%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  WK  N +TD+ER  I R L FFA+S+
Sbjct: 106 LFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMTDNERFFISRVLAFFAASD 163

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I S   D  E   LFN   
Sbjct: 164 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAIE 223

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WAL++                D+    +  V +   EG++F   FA I  
Sbjct: 224 NIPCIKKKAEWALRWIAD-------------DEALFAERLVAFAAVEGIFFSGSFASIFW 270

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    + I RDE LH +F   + + +    NP +  K        ++ EA 
Sbjct: 271 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNNRPNPAIVEK--------IITEAV 322

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T NPF +M E I L
Sbjct: 323 TIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKVYNVT-NPFDFM-ENISL 380

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV++YQ+  
Sbjct: 381 AGKTNFFEKRVSDYQKAG 398


>gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori P12]
 gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori P12]
          Length = 341

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL ANN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
 gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
          Length = 327

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 28/329 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+++   WE Y  +  + W   E+ +  DL  W SK  LTDDER  IK
Sbjct: 8   ILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSSK--LTDDERYFIK 65

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE 
Sbjct: 66  HVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN     P+I  KA WAL++   + SPSF             +  + +   EG++
Sbjct: 126 EKAMLFNAIETFPAIKKKAEWALKW---IESPSFA------------ERLIAFAAVEGIF 170

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE +H +F       + +   HL  K  +++
Sbjct: 171 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHEHHLINKVPKER 224

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R +L +A  +E  +  E++P   +G+N+    QY++F+ +     +G E  +  T NPF
Sbjct: 225 IREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TANPF 283

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +M ++I L+ + NFFE RV+EYQ+   L
Sbjct: 284 DFM-DMISLQGKTNFFEKRVSEYQKAGVL 311


>gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 325

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 28/322 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   WE Y S   + W   E+ +  DL  W +K  L++DER  +K  L FFA+S+
Sbjct: 17  IFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNK--LSNDERYFVKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   DE    ELFN   
Sbjct: 75  GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDELFNALE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P+I  KA+WALQ+ ++ S              F + L  F  V EG++F   F  I  
Sbjct: 135 VFPAIKKKADWALQWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F       + + N HL  K  +++ R+++ +A  
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKERIRSIIVDALN 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+NA    QY++F+A+R   ++G +  +  T NPF +M ++I L+
Sbjct: 234 IEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TANPFDFM-DMISLQ 291

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
            + NFFE +V EYQ+   +  D
Sbjct: 292 GKTNFFEKKVAEYQKAGVMNTD 313


>gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
 gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
          Length = 339

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 18/349 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           MA  T  +P    + + ++ D+R+     D +     +KY WA   + +   N W P EV
Sbjct: 1   MARKTIYNP----DSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREV 56

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            M  D   +K    LT  E+ M    L      +SL  NN++  I  +++ PE    L R
Sbjct: 57  QMTGDAKDYKY---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSR 113

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q++EEA HS ++  ++ S+  +  E+++M++    +  K N+       LS         
Sbjct: 114 QSYEEANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD-------N 166

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D++ +  +F   ++ EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    
Sbjct: 167 ITDEKMVLAMFANQIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQ 225

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++IN  + E P L+T E + K R M  +A  LE A+         +G       QY+Q++
Sbjct: 226 NMINSTRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYL 285

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           A++R   +G +P +   ++P PW+        ++ NFFE  V  Y +G+
Sbjct: 286 ADKRLDAVGYKPEYN-VKHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGS 333


>gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Oryctolagus cuniculus]
          Length = 339

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 163/333 (48%), Gaps = 28/333 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N LT D
Sbjct: 16  NEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRLTSD 72

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  +I +
Sbjct: 73  EKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDT 132

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  +   LFN    +P +  KA+WAL++     S   T G +           V + 
Sbjct: 133 YIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------VVAFA 179

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         +L  
Sbjct: 180 AVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVN 232

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 233 KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFSKVFQ 292

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 293 -AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 323


>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
 gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
          Length = 417

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 157/327 (48%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N R  V  L P+KY   W+ Y  A  + W   E+ +  D+  W   N L D+ER  I 
Sbjct: 95  MENTRRFV--LFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN--NRLNDNERFFIS 150

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I S   D  
Sbjct: 151 RILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPK 210

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA+WAL++              D D  F + L  F  V EG++
Sbjct: 211 EADFLFNAIDNIPCIRKKADWALRWIS------------DDDALFGERLVAFAAV-EGIF 257

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +   + 
Sbjct: 258 FSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPDAEI 310

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +G + ++  T NPF
Sbjct: 311 VEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVALGNKKVYNVT-NPF 369

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 370 DFM-ENISLAGKTNFFEKRVSDYQKAG 395


>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
 gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
          Length = 338

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 30/326 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+KY   W  Y  A  +HW+  E+ + +D   W+ K  LTD+ER  I 
Sbjct: 14  ILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYK--LTDNERHFIS 71

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 72  HVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQ 131

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + +LFN    +P I  KA WAL++              D+D  F + L  F  V EG++
Sbjct: 132 TKDKLFNAIETIPCIKKKAEWALRWIN------------DSDS-FAERLVAFAAV-EGIF 177

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQ 259
           F   F  I  L +   M G+    + I RDE LH +F   +  +++ + +P +  K    
Sbjct: 178 FSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEK---- 233

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               M+ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + +F  + NP
Sbjct: 234 ----MIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFN-SSNP 288

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345
           F WM E+I L+++ NFFE +V EY +
Sbjct: 289 FEWM-EMISLQRKSNFFEGKVAEYAK 313


>gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 344

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 175/337 (51%), Gaps = 19/337 (5%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +  KR++N  + ++N    +KY W  + Y    NN W+P EV +  DL   K    L D+
Sbjct: 17  ITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLDE 73

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER+   + L F    +S+   N+   I  +++  E    L  Q+F+EAVHS ++ Y++ S
Sbjct: 74  ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAVHSQSYSYMLDS 132

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +   E   E+   +++   +  +  +    Y + + +P+        ++  L+ L   Y+
Sbjct: 133 ICSPEKRNEILYQWKDDEILLNRNKFIGDLYNEFIDNPT--------EETLLKTLMANYI 184

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ EN  L+T
Sbjct: 185 L-EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENAELFT 243

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E + + R M+      EI + H  +     G+N    E+Y++++ N+R  +I LEPLF+
Sbjct: 244 EEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKEINLEPLFE 303

Query: 315 -YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +  NP PW+    +    K +FFE R T Y + A L
Sbjct: 304 GHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATL 340


>gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299]
 gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299]
          Length = 335

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D   + P+KYG  WE Y  A  + W   EV + DD+  W   N L +DE+  IK
Sbjct: 17  LLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW---NKLNNDEKHFIK 73

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D  
Sbjct: 74  HILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSEMYSLLIDAYVKDAQ 133

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF   + +P I  KA+WA ++ ++               +F + L  F  + EG++
Sbjct: 134 EKTYLFQAIQNIPCIAKKADWAFKWIES-------------SADFAERLIAFACI-EGIF 179

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + I         K  +  
Sbjct: 180 FSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYIN-------KKPNESV 232

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ EA  +E  +  + +P   VG+NA    +Y++F+A+    Q+G+   +    NPF
Sbjct: 233 VRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQLGMSKEYN-AANPF 291

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+  
Sbjct: 292 DWM-ELISLQGKTNFFEKRVGEYQKSG 317


>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana]
          Length = 340

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 160/330 (48%), Gaps = 36/330 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A++    + P++Y   WE Y  A  + W   EV +  D+  W++   LTD E+  I 
Sbjct: 21  LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
             L FFA+S+ +V  N+     R L++   PE R +   Q   E +HS  +  ++ +   
Sbjct: 78  HILAFFAASDGIVLENLA----RFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIK 133

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P I+ KA W L + Q  S  SF                V +   E
Sbjct: 134 DSKEKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACAE 179

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +I+ +++  P       
Sbjct: 180 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLISLLQLHVP------- 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R    +G E  +K  E
Sbjct: 233 LEKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-AE 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF WM E I L+ + NFFE RV EYQ+ +
Sbjct: 292 NPFDWM-EFISLQGKTNFFEKRVGEYQKAS 320


>gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
 gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
          Length = 341

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           +++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 VSWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 2 [Canis familiaris]
          Length = 351

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 163/337 (48%), Gaps = 28/337 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +   S   T G +           
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +F+  ENPF +M E I L+ + NFFE RV EYQ+ A
Sbjct: 301 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 335


>gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
 gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa]
 gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
          Length = 410

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 35/344 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L P +A E  +  + +R +        L P+KY   W+ Y  A  + W   E+ +  DL 
Sbjct: 70  LKPEEANEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +
Sbjct: 122 DWN--NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   +  +   LFN    +P I  KA+WAL++    SS            
Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSST----------- 228

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 229 -FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 286

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  HL  +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R 
Sbjct: 287 -------HLNNRPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRL 339

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +G E +++ T NPF +M E I L  + NFFE RV +YQ+  
Sbjct: 340 LVALGNEKIYRST-NPFDFM-ENISLGGKTNFFEKRVGDYQKAG 381


>gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
 gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
          Length = 329

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 159/314 (50%), Gaps = 15/314 (4%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L+  E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             NN  +  Y ++  P E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V GL+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
 gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
          Length = 328

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 28/330 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+++   WE Y  +  + W   E+ +  DL  WK K  LTDDER  IK
Sbjct: 7   ILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWKGK--LTDDERYFIK 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE 
Sbjct: 65  HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN     P+I  KA+WAL++   + SPSF            + L  F  V EG++
Sbjct: 125 EKDKLFNALENFPAIKKKADWALKW---IDSPSFA-----------ERLIAFAAV-EGIF 169

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE +H +F       + + N HL  K  +++
Sbjct: 170 FSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKER 223

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  E++P   +G+N+    QY++++ +R   ++  E ++  T NPF
Sbjct: 224 ITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TANPF 282

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +M ++I L+ + NFFE RV EYQ+   +K
Sbjct: 283 DFM-DMISLQGKTNFFEKRVGEYQKAGVVK 311


>gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio]
          Length = 349

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 166/347 (47%), Gaps = 31/347 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E   LFN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWIS----------- 175

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F + L  F  V EG++F   FA I  L R   M G+    + I RDE LH NF 
Sbjct: 176 -DTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                   +   +L  K    +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 C-------LMYSYLVKKPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +A+R    +GL P    +ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 287 VADRLLTDLGL-PKAYCSENPFDFM-ESISLEGKTNFFEKRVAEYQR 331


>gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 26695]
 gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB)
           [Helicobacter pylori 26695]
          Length = 341

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL ANN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
          Length = 419

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 98  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 155

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 156 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 215

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 216 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 262

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 263 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 315

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 316 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 374

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 375 DFM-ENISLAGKTNFFEKRVSDYQKAG 400


>gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276]
 gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus
           gattii WM276]
          Length = 430

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+    DL  W  +  +T+ ER  I R L FFA+S+
Sbjct: 112 LFPIKYNEIWQAYKRAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  NIV      +   E R +   Q+  E VHS T+  +I +   D  E   LF    
Sbjct: 170 GIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGME 229

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL+Y                D+   +   V +   EG++F   FA I  
Sbjct: 230 NIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIFFSGSFAAIFW 275

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   + N +K    H  + +   +   ++ EA +
Sbjct: 276 LKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK----HRCSTD---EVHRIVSEALV 328

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QYM+F+A+R    +G   ++  T NPF WM E+I L+
Sbjct: 329 IEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQ 386

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE+RV+ YQ+ 
Sbjct: 387 GKANFFESRVSAYQKA 402


>gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 334

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 157/317 (49%), Gaps = 24/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S+  
Sbjct: 27  PFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVTQIFRFFTQSDVE 84

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 85  V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESEYSAFLKYKE 142

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y Q      F+   K    E  + L  F    EG+  +  FA +L+ 
Sbjct: 143 MKD-------KYDYMQ-----EFSVSNK---YEIARTLAAFGAFTEGLQLFASFAILLNF 187

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NK+ G+ +   + +RDE+LH      +      ENP +WT++ Q   R +  +    
Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQICRDIVEH 247

Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E A+   +   G V GL+A   ++Y++F+ANRR  Q+GL+ L+    NP PW+ E+++  
Sbjct: 248 EDAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPWVDEMVNAV 307

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE R TEY + A
Sbjct: 308 EHANFFENRSTEYSRAA 324


>gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
 gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
          Length = 341

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL ANN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
          Length = 401

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 154/318 (48%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   WE Y  A  + W   E+ +  DL  W   N + ++ER  I R L FFA+S+
Sbjct: 88  LFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRILAFFAASD 145

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 146 GIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++ Q            D D  F + L  F  V EG++F   FA I  
Sbjct: 206 TIPQIKEKAEWAIRWIQ------------DDDALFGERLVAFAAV-EGVFFSGSFAAIFW 252

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    + I RDE LH +F   +   +K + NP +  K        ++ EA 
Sbjct: 253 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPNPEIVEK--------IITEAV 304

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  Y  + +P   +G+NA    QY++F+A+R    +G +  F  T NPF +M E I L
Sbjct: 305 EIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT-NPFDFM-ENISL 362

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV++YQ+  
Sbjct: 363 AGKTNFFEKRVSDYQKAG 380


>gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum ATCC 824]
 gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum EA 2018]
          Length = 344

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 173/334 (51%), Gaps = 19/334 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           K+++N  + ++N    +KY W  + Y    NN W+P E+ +  DL   K    LTD+ER 
Sbjct: 20  KKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL---KDYGKLTDNERT 76

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++ ++  
Sbjct: 77  AYDKILSFLIFLDSVQTANLG-NINDYITASEVNLCLTIQAFQEAVHSQSYSYMLDTICS 135

Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            E   E+   +++   + ++  +    Y   +  PS        D+ FL+ +   YV+ E
Sbjct: 136 PEKRNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPS--------DENFLKAIMGNYVL-E 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ E P ++T+E 
Sbjct: 187 GIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQKEEPDMFTEEI 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           +++ + M+      EI + H  +     G+N    E Y++++ NRR   IG EP+++ Y 
Sbjct: 247 KKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLEAIGFEPIYEGYD 306

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           ENP  W+    D    K +FFE + T Y + + L
Sbjct: 307 ENPALWVDIYADANSVKTDFFEAKSTAYAKASTL 340


>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
 gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
 gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
          Length = 399

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio]
 gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B
           (TP53 inducible) (RRM2B) [Danio rerio]
          Length = 349

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 168/347 (48%), Gaps = 31/347 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E   LFN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWIS----------- 175

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F + L  F  V EG++F   FA I  L +   M G+    + I RDE LH NF 
Sbjct: 176 -DTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +I    ++ P +       +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 C-LIYSYLVKKPSV------DRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +A+R    +GL P    +ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 287 VADRLLTDLGL-PKAYCSENPFDFM-ESISLEGKTNFFEKRVAEYQR 331


>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
          Length = 399

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
          Length = 399

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           acinonychis str. Sheeba]
 gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 341

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLIDEVIEMFKKAVKIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
 gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
           AltName: Full=Ribonucleotide reductase R2 subunit 1;
           AltName: Full=Ribonucleotide reductase small subunit 1
 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
           cerevisiae]
 gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
 gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 344

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 21/335 (6%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL  +K    L  DER 
Sbjct: 20  KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPDERT 76

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   I  +++  E    L  Q+F+EAVHS ++ Y++ S+  
Sbjct: 77  AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135

Query: 141 DE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            E   E+   +++   I  K N  +   Y + +++P+        +   ++ L   Y++ 
Sbjct: 136 PEERNEILYQWKD-DEILLKRNKFIGDLYNEFINNPN--------EYNLIKTLMANYIL- 185

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ ENP  +T +
Sbjct: 186 EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQSENPESFTAD 245

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
            + + R M+H     EI + H  +     G+N    E Y++++ N+R  +IGLEPLF  Y
Sbjct: 246 LKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKEIGLEPLFSGY 305

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            ENP  W+  V +    K +FFE + T Y + + L
Sbjct: 306 EENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340


>gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella
           virus MT325]
          Length = 326

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 28/314 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P+KY   +  Y  A +  W   EVP+  D+A W+ K  L DDER  IK  LGFFA S+ 
Sbjct: 21  FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 78

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  NI       +++P  R +   Q F E++HS  +  ++ +L  D+ E   LF+    
Sbjct: 79  MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++                D+ F + L V +V  EG+ F   F  I  L
Sbjct: 139 IPAVGKKAAWAQKFLSQ-------------DKSFAERL-VAWVCVEGLLFSGSFCAIFWL 184

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + +  K+EN     K    + + ++ EA   
Sbjct: 185 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLAQVKAIVEEAVAN 237

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N+    QY++F+A+R    +G    +  T NPF +M E+I L+ 
Sbjct: 238 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 295

Query: 332 EKNFFETRVTEYQQ 345
           + NFFE RV+EYQ+
Sbjct: 296 KSNFFERRVSEYQR 309


>gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
 gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
          Length = 342

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 168/320 (52%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA E Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYNWANELYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++ PE    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE  +
Sbjct: 89  SENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDKN 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q+ +    T       + FL+ +   Y++ EG++FY+GF+   +L R 
Sbjct: 148 LLERNKFIAGIYQSFNENPTT-------ENFLRTIMANYIL-EGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I ++K ENP ++T+   ++ R M+      EI 
Sbjct: 200 GKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIMEEFRMMMKMGVEHEIK 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +G+N    E+Y+++++N R + IGLE L+ + TE+P  W+     L   K
Sbjct: 260 WGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEWIENFSKLNNTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
 gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
          Length = 323

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 30/334 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N++++ +L    D   LLP+ Y   WEKY     + W   E+ +  D+  W   N L D
Sbjct: 1   MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I 
Sbjct: 58  GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LF+    VP++T KA WAL++ +              +  F + L  F 
Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIE--------------NGNFAERLVAFA 163

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   F  I  L +   M G+    + I RDE LH  F   +   ++   P   
Sbjct: 164 AV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLP--- 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++  T++ +A  +E  +  + +P   +G+N+    +Y++F+A+R   ++G   +F
Sbjct: 220 ----EEQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             T NPF +M E+I L+ + NFFE RV +YQ+  
Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAG 307


>gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 348

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 28/314 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P+KY   +  Y  A +  W   EVP+  D+A W+ K  L DDER  IK  LGFFA S+ 
Sbjct: 43  FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 100

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  NI       +++P  R +   Q F E++HS  +  ++ +L  D+ E   LF+    
Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++                D+ F + L V +V  EG+ F   F  I  L
Sbjct: 161 IPAVGKKAAWAQKFLSQ-------------DKSFAERL-VAWVCVEGLLFSGSFCAIFWL 206

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + +  K+EN     K    + + ++ EA   
Sbjct: 207 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLAQVKAIVEEAVAN 259

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N+    QY++F+A+R    +G    +  T NPF +M E+I L+ 
Sbjct: 260 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 317

Query: 332 EKNFFETRVTEYQQ 345
           + NFFE RV+EYQ+
Sbjct: 318 KSNFFERRVSEYQR 331


>gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 329

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 15/314 (4%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L+  E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             NN  +  Y ++  P E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V GL+A     Y+ ++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 335

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 30/320 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y W ++ +L+    HW+P EVP+ DD+  W+    L+  E+ ++ +   FF  ++  
Sbjct: 28  PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQADVE 85

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V NN  L  Y  +  P E    +   A  E VH   + +++ ++G+ E E   F  Y+E+
Sbjct: 86  V-NNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESEYSAFMKYKEM 144

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q      F   +K   ++  + + VF    EG+  +  FA +L+  
Sbjct: 145 KD-------KYDYMQ-----DFNVNSK---EDIAKTVAVFSAFTEGLQLFASFAILLNFP 189

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTML-HE 267
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT    KE  +  RT++ HE
Sbjct: 190 RHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYEACRTIIAHE 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +++A+    M     GL A   + Y++FI NRR  Q+GLEP++   +NP  W+  ++
Sbjct: 250 DAFIDLAFEMGPME----GLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGWLDTML 305

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           +  +  NFFE R TEY + +
Sbjct: 306 NAVEHMNFFEGRATEYSKAS 325


>gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Lithuania75]
          Length = 341

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
 gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
          Length = 325

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 159/322 (49%), Gaps = 28/322 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   WE Y     + W   E+ +  DL  W +K  L DDER  IK  L FFA+S+
Sbjct: 17  IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNK--LNDDERYFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   DE    ELFN   
Sbjct: 75  GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKTELFNALE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P+I  K  WAL++ ++ S              F + L  F  V EG++F   F  I  
Sbjct: 135 VFPAIAKKGEWALKWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F       + + N HL  K  +++ + ++ +A  
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKERIKEIIVDALD 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+NA    QY++F+A+R   ++G E ++  + NPF +M ++I L+
Sbjct: 234 IERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SANPFDFM-DMISLQ 291

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
            + NFFE RV EYQ+   +  D
Sbjct: 292 GKTNFFEKRVAEYQKSGVMNTD 313


>gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 329

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 159/314 (50%), Gaps = 15/314 (4%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L+  E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             NN  +  Y ++  P E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V GL+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 324

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 157/314 (50%), Gaps = 28/314 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   W  Y  A    W   EVP+  D+A W+ K  L +DER  IK  LGFFA S+ 
Sbjct: 19  FPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWREK--LNNDERHFIKHILGFFAGSDG 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  N+       +  PE RQ+   Q F E+VHS  +  +I +L  DE E   LF+    
Sbjct: 77  IVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALISDEQERLDLFDAIET 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++ +              ++ F + L V ++  EG+ F   F  +  L
Sbjct: 137 IPAVHNKAKWAQKWLK-------------PERSFAERL-VAWICVEGILFSGSFCALFWL 182

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG       ++    L  K   +  + ++ EA   
Sbjct: 183 RNKGVMPGLCLSNEFISRDEGLHQQFG-------ELMYSKLQNKLSFETIKQIIMEAVTN 235

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+NA    QY++F+A+R    +G E ++  ++NPF +M E+I L+ 
Sbjct: 236 EKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-SKNPFAFM-ELISLEG 293

Query: 332 EKNFFETRVTEYQQ 345
           + NFFE RV++YQ+
Sbjct: 294 KTNFFEKRVSDYQR 307


>gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 430

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 151/316 (47%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+    DL  W  +  +T+ ER  I R L FFA+S+
Sbjct: 112 LFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  NIV      +   E R +   Q+  E VHS T+  +I +   D  E   LF    
Sbjct: 170 GIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGMT 229

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL+Y                D+   +   V +   EG++F   FA I  
Sbjct: 230 NIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIFFSGSFAAIFW 275

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   + N +K       T E       ++ EA +
Sbjct: 276 LKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK---HRCSTDEVHH----IVSEALV 328

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QYM+F+A+R    +G   ++  T NPF WM E+I L+
Sbjct: 329 IEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQ 386

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE+RV+ YQ+ 
Sbjct: 387 GKANFFESRVSAYQKA 402


>gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F30]
          Length = 341

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori B38]
 gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Helicobacter pylori B38]
          Length = 341

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SouthAfrica7]
          Length = 341

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EKNILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLIDEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Sat464]
          Length = 341

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EESILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
 gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
          Length = 341

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
           sapiens]
          Length = 423

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 166/346 (47%), Gaps = 28/346 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            G S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  D
Sbjct: 87  AGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKD 146

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E
Sbjct: 147 LPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 203

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            VHS  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +  
Sbjct: 204 NVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER-- 258

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                    V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 259 --------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLM 310

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
                    +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+
Sbjct: 311 FQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVAD 363

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 364 RLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 407


>gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori v225d]
 gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Cuz20]
 gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F32]
 gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 83]
          Length = 341

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
 gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
          Length = 323

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 32/319 (10%)

Query: 34  LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K   AC   W   E+ +  DL  W +K  LTDDER  IK  L FFA+
Sbjct: 17  IFPIQHNDLWEWYKKQQAC--FWTAEEIDLHSDLVDWTTK--LTDDERYFIKHILAFFAA 72

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE E   ++R 
Sbjct: 73  SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDRLFRA 132

Query: 152 V---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           +   P+I  KA+WAL++ ++              + F + L  F  V EG++F   F  I
Sbjct: 133 IEVFPAIKKKADWALKWIES--------------ESFAERLIAFAAV-EGIFFSGAFCSI 177

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L +   + G+    + I RDE +H +F       + + N H+  +  + + + ++ +A
Sbjct: 178 FWLKKRGLLPGLTFSNELISRDEGMHCDFA------VHLHNNHIVNRVPKDRIKEIIVDA 231

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E  +  E++P   +G+NA    QY++F+ +R   + G E ++  T NPF +M E+I 
Sbjct: 232 LDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT-NPFDFM-EMIS 289

Query: 329 LKKEKNFFETRVTEYQQGA 347
           L+ + NFFE RV+EYQ+  
Sbjct: 290 LEGKTNFFEKRVSEYQKAG 308


>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila]
 gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 376

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 167/347 (48%), Gaps = 35/347 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N+ G +P +  E      D+ +L    +   L P+KY   WE Y     + W   E+ + 
Sbjct: 45  NDEGKAPKEGYE------DEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWTADEIDLY 98

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LTD+ER  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 99  QDLKDWER---LTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIA 155

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E   LF   + VP I  KA WAL++              
Sbjct: 156 MENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWINN----------- 204

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             +  F   L  F  + EG++F   F  I  L + + M G+    + I RDE LH +F  
Sbjct: 205 --NDNFASRLIAFAAI-EGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEGLHTDFAC 261

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + + +   N  L  +E  +    ++ EA  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 262 LLYSML---NKKLTKEEIYE----IITEAVEIEKEFISEALPVELIGMNSNMMKQYLEFV 314

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           A+R    +G+ P F  ++NPF WM ++I ++ + NFFE RV EYQ+ 
Sbjct: 315 ADRLLFALGV-PKFYNSKNPFEWM-DMISIQGKTNFFEKRVGEYQKA 359


>gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 409

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 153/322 (47%), Gaps = 36/322 (11%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P+++   W  Y     + W   E+ +  DL  W  +  L D+ER  I   L FFA +
Sbjct: 95  SLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFAGA 152

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           + +V  N+     R ++ PE R +   Q   E +H  T+  +I S   D  +   LF  +
Sbjct: 153 DGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFAAH 212

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +VPS+  KA WA +Y  +             D  F + L  F  V EG++F   F  I 
Sbjct: 213 TKVPSVEKKARWAQRYIGS-------------DASFAERLVAFAAV-EGIFFSGAFCSIF 258

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH--- 266
            L +   M G+    + I RDE LH +F              L++K  ++ S T +H   
Sbjct: 259 WLKKRGLMPGLTFSNELISRDEGLHCSFAC-----------QLYSKLERKLSETDMHKLI 307

Query: 267 -EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  +E  +  + +P G +G+NA    QY++F+A+R  H +G   L+  ++NPF WM +
Sbjct: 308 GEAVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWM-D 365

Query: 326 VIDLKKEKNFFETRVTEYQQGA 347
           +I L+ + NFFE RV EYQ+  
Sbjct: 366 MISLEGKTNFFEKRVGEYQKSG 387


>gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca]
          Length = 336

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 9   ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 66  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 125

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +   S   T G +           
Sbjct: 126 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 172

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 173 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 225

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 226 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 285

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +F+  ENPF +M E I L+ + NFFE RV EYQ+ A
Sbjct: 286 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 320


>gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 35A]
          Length = 341

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori 51]
          Length = 341

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            ++         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Ailuropoda melanoleuca]
          Length = 387

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 60  ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 117 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 176

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +   S   T G +           
Sbjct: 177 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 223

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 224 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 276

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 277 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 336

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +F+  ENPF +M E I L+ + NFFE RV EYQ+ A
Sbjct: 337 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 371


>gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
 gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
          Length = 351

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 173/340 (50%), Gaps = 21/340 (6%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +V+++R+     + + +L  +KY WA+    +   N W P EV M  D   +     LT 
Sbjct: 25  SVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNMNQDKRDYME---LTL 81

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+    R L      +SL  NN+   I  +++ PE    L+RQAFEE++H+ ++  ++ 
Sbjct: 82  QEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQAFEESLHAQSYAVMVD 141

Query: 137 SLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKD--ADQEFLQDLFVFY 193
           S+  +  E++ M+R+   + +K ++ A  YT    +P+ T   K   A+Q          
Sbjct: 142 SISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPTETNLIKAMFANQ---------- 191

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GFA   +L R+ KM   AE  ++I RDE  HL     +I   + E P L+
Sbjct: 192 -ILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQMIISTRKERPDLF 250

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+  Q +   M  +A  LE ++         +GL A    QY++++A++R   +   P+ 
Sbjct: 251 TQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLADKRLKAVDY-PIL 309

Query: 314 KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             T+NP  W+ E ++   ++ NFFE +V  Y +G ELK++
Sbjct: 310 YNTQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG-ELKFE 348


>gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 365

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S+  
Sbjct: 57  PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHRT--LTESERHLVTQIFRFFTQSDVE 114

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E ++ + +  
Sbjct: 115 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 171

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q++ +             + +  + L  F    EG+  +  FA +L+  R
Sbjct: 172 EMKDKYDYMQQFSVS------------DNYQIARTLAAFGAFTEGLQLFASFAILLNFPR 219

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NK+ G+ +   + +RDESLH +    +      ENP +WT   +   R +  +    E 
Sbjct: 220 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFVQENPEIWTDTLRDDIRQICRDIVEHED 279

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+   +   G V GL+A   ++Y++F+ANRR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 280 AFIDLSFEMGAVEGLDAGQVKRYIRFVANRRLGQLGLDGIYDIATNPLPWVDEMVNAVEH 339

Query: 333 KNFFETRVTEYQQGAEL-KWD 352
            NFFE R TEY + +    WD
Sbjct: 340 ANFFENRATEYSRASTTGTWD 360


>gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera
           kw1407]
          Length = 378

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 163/343 (47%), Gaps = 32/343 (9%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NNT +S I+A E      ++ +L   +    L P+KY   W+ Y     + W   E+ + 
Sbjct: 47  NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L DDER  +   L FFA+S+ +V  N+V      +  PE R +   Q  
Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS T+  +I +   D  +   LFN    +P I  KA+WAL++              
Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWIS------------ 207

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D +  F Q L  F  V EG++F   F+ I  L +   M G+    + I RDE LH +F  
Sbjct: 208 DRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 266

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + +       HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 267 LLFS-------HLKNRPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEFV 319

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           A+R    +G + ++  T NPF +M E I L  + NFFE RV E
Sbjct: 320 ADRLLVALGNDKVYNST-NPFDFM-ENISLGGKTNFFEKRVPE 360


>gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 159/318 (50%), Gaps = 28/318 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P+ Y   W  Y     + W   E+ +  DL+ W  K  L  DER  I   L FFA +
Sbjct: 14  SLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHKK--LNPDERHFISMVLAFFAGA 71

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMY 149
           + +V  N+     R ++ PE R +   Q   E++H  T+  +I +   D      LF+ +
Sbjct: 72  DGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKVRERLFSAH 131

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             VPS+  KA+WA +Y  + +S             F + L  F  V EG++F   F  I 
Sbjct: 132 ATVPSVERKASWAQRYIGSKAS-------------FAERLVAFAAV-EGIFFSGSFCAIF 177

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   + +++K+       K  Q++ +T+++EA 
Sbjct: 178 WLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKL-------KLSQEEIQTIINEAV 230

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E ++  + +P   +G+N+    QY++F+A+R    +G + ++  ++NPF WM ++I L
Sbjct: 231 DVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFDWM-DMISL 288

Query: 330 KKEKNFFETRVTEYQQGA 347
           + + NFFE RV EYQ+  
Sbjct: 289 EGKTNFFEKRVGEYQKSG 306


>gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
 gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
          Length = 343

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +++    HW+P EVPM DD+  W+    LT+ ER ++ +   FF  ++  
Sbjct: 21  PFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQ--KNLTESERNLLTQIFRFFTQADVE 78

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 79  V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYQAFLKYKE 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y Q+ S  + T        E  + L  F    EG+  +  FA +++ 
Sbjct: 137 MKD-------KYDYMQSFSVENKT--------EIAKTLAAFGAFTEGLQLFASFAILMNF 181

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266
            R NKM G+ +   + +RDE+LH    I +      ENP +WT++ +       +  + H
Sbjct: 182 PRFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVEICTTIVEH 241

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+       G  G+     +QY++FIA+RR  Q+GLEP +   +NP PW+ E+
Sbjct: 242 EDAFIDLAFEL----GGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPWLDEI 297

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           ++  +  NFFE R TEY + +
Sbjct: 298 LNAVEHMNFFEGRATEYSKAS 318


>gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           pylori B8]
 gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           pylori B8]
          Length = 341

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 341

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  I   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus]
 gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
 gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++     S   T G +           
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  + + R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 241 YLVNKPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 301 KIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
           sapiens]
 gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 2 [Pan troglodytes]
 gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens]
 gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens]
 gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo
           sapiens]
 gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens]
 gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo
           sapiens]
 gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct]
 gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic
           construct]
          Length = 351

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +     
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 1 [Callithrix jacchus]
          Length = 351

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +     
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G    F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 295 VELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
 gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
          Length = 339

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 176/349 (50%), Gaps = 18/349 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M   T  +P    + + +++D+R+    SD +     +KY WA   + +   N W P EV
Sbjct: 1   MERKTNYNP----DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREV 56

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            M  D   +K    LT  E+ M    L      +SL  NN++  I  +++ PE    L R
Sbjct: 57  QMTGDAKDYKF---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLAR 113

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q++EEA HS ++  ++ S+  +   +++M++    +  K  +  +  + LS      G  
Sbjct: 114 QSYEEANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLS------GDI 167

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D D++ +  LF   ++ EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    
Sbjct: 168 D-DRKIVLALFANQIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQ 225

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++IN ++ E P L+T+E ++  R M  +A  LE ++         +G       QY++++
Sbjct: 226 NMINSVRKERPDLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYL 285

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           A+RR   +G +  +   ++P PW+        ++ NFFE  V  Y +G+
Sbjct: 286 ADRRLEAVGYKAEYG-VKHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS 333


>gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens]
          Length = 351

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +     
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii]
 gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii]
          Length = 351

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +     
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 147

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 99/145 (68%)

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +L+LGR NK+ G+++Q +Y +RDESLH+NFG  +IN +K + P +WTK+F++++   + +
Sbjct: 2   LLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIKK 61

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  LEI YAH+ +P+G +GLNA     YM +I NRR   IGL+  F+   NPFPW+SEV+
Sbjct: 62  AVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEVV 121

Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352
           D     NFFE +V +YQ    L+ D
Sbjct: 122 DTGAMTNFFERKVKDYQNSGVLEDD 146


>gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
          Length = 309

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 19/320 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P+K+ WA        NN W P  V M DD+A   S N L   +R M  + L F ++ + +
Sbjct: 5   PMKHTWAKGILDRMENNTWFPHVVNMADDVA---SYNRLNAADRFMFDKALAFLSNLDGI 61

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
             NNI   I +H+++PE    L RQA+EEA+H  ++  II ++ LD   ++  +     +
Sbjct: 62  QFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDGLL 121

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  + L+ ++ L       G K + + F     V  V+ EG++F++GF     L    
Sbjct: 122 AQKNQFILKQSRLL-------GEKFSAEGFALSC-VSNVLLEGVYFFSGFLSFYLLADKG 173

Query: 216 KMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           +M+G A+  +YI RD E  HL+    +++ ++ EN  ++T+ F  K+  +   ++ +EI+
Sbjct: 174 EMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEMEIS 233

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLK-K 331
           +  + + KG    N  + E Y++ +AN R  QI   P   Y   +NPFPW+ +       
Sbjct: 234 WG-KYITKGVT--NPKAIEDYIKHLANLRAEQIQ-APFVPYPGVKNPFPWVEQFSKPNTS 289

Query: 332 EKNFFETRVTEYQQGAELKW 351
           EKNFFETRVT+Y+ G  L W
Sbjct: 290 EKNFFETRVTDYKVGGALVW 309


>gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
 gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
          Length = 409

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  + DDE+  I   L FFA+S+
Sbjct: 88  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 145

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 146 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTHLFNAID 205

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P+I  KA+WAL++              D    F Q L  F  V EG++F   FA I  
Sbjct: 206 TIPAIRKKADWALRWIT------------DQKSTFAQRLVAFAAV-EGIFFSGAFASIFW 252

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  +Q    ++ +A  
Sbjct: 253 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQIIEDIIVDAVR 305

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G E +++ T NPF +M E I L 
Sbjct: 306 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYRST-NPFDFM-ENISLG 363

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 364 GKTNFFEKRVGEYQKAG 380


>gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 362

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 167/344 (48%), Gaps = 28/344 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   A E   ++D++ +L        + P++Y   W+ Y  A  + W   EV +  DL 
Sbjct: 28  MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E V
Sbjct: 88  HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  +   LFN    +P +  KA+WAL++ +            D + 
Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIE------------DRES 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 193 TFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  +L  +  +++   ++  A  +E  +  E +P G +G+N    +QY++F+A+R 
Sbjct: 252 -------YLVNRPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 305 LMELGFSKVFN-VENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 346


>gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR]
 gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H143]
 gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H88]
          Length = 413

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 162/346 (46%), Gaps = 35/346 (10%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG+  ++A E  +  +  R +        L PLKY   W+ Y  A  + W   E+ +  D
Sbjct: 70  TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E
Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ +            D 
Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DK 227

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 228 DSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL 286

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            +       HL  +   +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+
Sbjct: 287 FS-------HLRHRPSPEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVAD 339

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           R    +G + ++  T NPF +M   I L  + NFFE RV +YQ+  
Sbjct: 340 RLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAG 383


>gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
           butzleri RM4018]
 gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter
           butzleri RM4018]
          Length = 339

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 171/336 (50%), Gaps = 14/336 (4%)

Query: 14  EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +++D+R+    SD +     +KY WA   + +   N W P EV M  D   +K   
Sbjct: 10  DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYKF-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EEA HS ++ 
Sbjct: 68  -LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKSYA 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++ S+  +   +++M++    +  K  +  +  + LS      G  D D++ +  LF  
Sbjct: 127 VMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLS------GDID-DRKIVLALFAN 179

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            ++ EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN ++ E P L
Sbjct: 180 QIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERPDL 238

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T E ++  R M  +A  LE ++         +G       QY++++A+RR   +G +  
Sbjct: 239 FTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYKAE 298

Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           +   ++P PW+        ++ NFFE  V  Y +G+
Sbjct: 299 YG-VKHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS 333


>gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 327

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +     IENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRATEYSKAA 309


>gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
 gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
          Length = 328

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 32/334 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+K+   W W K   AC   W   E+ + +DL  W +K  L +DER  
Sbjct: 8   ILTENPDRFVIFPIKHDDLWEWYKKCEAC--FWTAEEIDLSEDLNDWNNK--LNEDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++ +   SPSF            + L  F  V EG
Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKWIE---SPSFA-----------ERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++       + + N HL  K  +
Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNHHLINKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +  + N
Sbjct: 223 ARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEYNVS-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M ++I L+ + NFFE RV+EYQ+   L  D
Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F16]
          Length = 341

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 SLWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPAG1]
 gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori HPAG1]
          Length = 341

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus
           caballus]
          Length = 351

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 28/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            E     +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N
Sbjct: 23  NENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---N 79

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  + 
Sbjct: 80  KLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYS 139

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  +   LFN    +P +  KA+WALQ+     S   T G +          
Sbjct: 140 LLIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIADRKS---TFGER---------- 186

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +        
Sbjct: 187 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------ 240

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +L  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G 
Sbjct: 241 -YLVNKPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVELGF 299

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 300 SKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 52]
          Length = 341

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori India7]
          Length = 341

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSVEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + +K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
 gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
          Length = 342

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 168/321 (52%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA   Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERHAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++ PE    L  QAF+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-HLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPVTRDKIYDQWREDEE 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P+        D+ FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLKRNRFIADIYERFNEEPN--------DKNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K ENP L+T+   ++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEITHLVVFQNIIKELKKENPELFTESMIEEFREMMRVGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
           A+         +G+N    + Y+++++N+R   IGLE L+ + T +P  W+     L   
Sbjct: 259 AWGQYVTANEIMGINDQLIDAYIKYLSNQRLKAIGLEELYPEITTHPMAWIDSFSKLNNT 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
          Length = 342

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 177/336 (52%), Gaps = 18/336 (5%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           K +    +++ +L  +KY WA++ Y +    N W+P E+PM +D   ++    L+  E+ 
Sbjct: 19  KVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQYEK--DLSPYEKR 76

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
             +  L F  + +S   N ++    R+++ PE    L  Q F+EA+HS+++Q+I+ S+  
Sbjct: 77  AYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALHSYSYQFILESVVE 135

Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            +   E++N +R+   +  +     Q Y + +  P+        ++ F++  F  YV+ E
Sbjct: 136 PQVADEIYNYWRQDTVLMERNQVIAQLYNEFIRHPT--------EENFIKATFGNYVL-E 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  IK ENP L+T E 
Sbjct: 187 SLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTIKQENPELFTPEL 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYT 316
           ++        AT  EI +         +G+N    ++Y++++AN R  Q+G +PL+ + T
Sbjct: 247 EKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLTQLGYKPLYPEIT 306

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351
           ENP  W+ +   +   K +FF+ +   Y + +ELKW
Sbjct: 307 ENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans]
 gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans]
          Length = 403

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 151/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N + ++ER  I R + FFA+S+
Sbjct: 90  LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRVIAFFAASD 147

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      + +PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 148 GIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESDFLFNAIE 207

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++ Q            D D  F + L  F  V EG++F   FA I  
Sbjct: 208 TIPQIKEKAEWAIRWIQ------------DEDALFAERLVAFAAV-EGVFFSGSFAAIFW 254

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K        ++ EA  
Sbjct: 255 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAIIERIITEAVE 307

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M E I L 
Sbjct: 308 IEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT-NPFDFM-ENISLA 365

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 366 GKTNFFEKRVSDYQKAG 382


>gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
 gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
          Length = 343

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 166/355 (46%), Gaps = 36/355 (10%)

Query: 7   LSPIQAGEKRVNV------DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           LS I    K+VN       +++ +L    D   +LP+ Y   WE Y     + W   E+ 
Sbjct: 4   LSAINTKYKKVNTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEID 63

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + DD+  W   N L D ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 64  LSDDMKDW---NNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   D  E   LF+    VP +  K  WAL++ +         G
Sbjct: 121 IMMENIHSETYALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIE--------NG 172

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
           T      F + L  F  V EG++F   F  I  L +   M G+    + I RDE +H  F
Sbjct: 173 T------FAERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEF 225

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + + +         K  ++   T++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 226 ACLLYSMLS-------NKLSKEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIE 278

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+A+R   ++G + L+  T NPF +M E+I L+ + NFFE RV +YQ+   L  D
Sbjct: 279 FVADRWLQELGYDKLYHAT-NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331


>gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis]
          Length = 351

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     +  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +     
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 187 -----VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 241 ------YLVNKPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 295 VELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum
           PN500]
          Length = 335

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 162/332 (48%), Gaps = 32/332 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+KY   W+ Y  A  + W   E+ +  D+  W++K  L D+ER  I 
Sbjct: 9   ILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWENK--LNDNERHFIT 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 67  NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDSE 126

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            +  +F+    +P++  KA+WAL++     S             F + L  F  V EG++
Sbjct: 127 TKRNIFHAIDTIPAVKKKADWALRWISNSKS-------------FAERLVAFAAV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQ 258
           F   F  I  L +   M G+    + I RDE LH +F   +  ++  K++N  +      
Sbjct: 173 FSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQNKLDNNTI------ 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
               T++ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + ++  + N
Sbjct: 227 ---ETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SSN 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+++ NFFE +V+EYQ+    K
Sbjct: 283 PFDWM-EMISLQRKTNFFEGKVSEYQKSGVAK 313


>gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
          Length = 342

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 168/320 (52%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA E Y +  NN W+P E+ + +D+   K  + LTD ER    + + F    +S+ 
Sbjct: 32  IKYNWANELYRNMLNNFWIPEEISLNEDV---KQFSYLTDGERNAFDKIISFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++   +   ++++ +RE  +
Sbjct: 89  SENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDKN 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  +    T       + FL+ +   Y++ EG++FY+GF+   +L R 
Sbjct: 148 LLERNKFIAGIYQRFNENPTT-------ENFLRTIMANYIL-EGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I ++K EN  ++T+   ++ R M+      EI 
Sbjct: 200 GKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEEFRMMMKTGVEHEIK 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +G+N    E+Y+++++N R + IGLE L+ + TE+P  W+     L   K
Sbjct: 260 WGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEWIENFSKLNNTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
 gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
          Length = 335

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 157/327 (48%), Gaps = 32/327 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+KY   W  Y  A  + W   E+ +  DL  W SK  L D+ER  I 
Sbjct: 9   ILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSSK--LNDNERHFIS 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 67  NVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDNE 126

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + +LFN    +P I  KA+WAL++     S             F + L  F  V EG++
Sbjct: 127 QKSKLFNAIDTIPCIKKKADWALKWINNSDS-------------FAERLVAFAAV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQ 258
           F   F  I  L +   M G+    + I RDE LH NF   +  ++  K+E+  L      
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTKLINKLESKTL------ 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ +A + E  +  +++P   +G+N+ S  QY++F A+R    +G + ++  + N
Sbjct: 227 ---EAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYNAS-N 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           PF WM E+I L+++ NFFE +V EY +
Sbjct: 283 PFDWM-EMISLQRKTNFFEGKVAEYAK 308


>gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 4 [Canis familiaris]
          Length = 374

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 169/353 (47%), Gaps = 37/353 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +   S   T G +           
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG-------IDVIN 243
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F        ++  +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247

Query: 244 QIKIENPHLWTKEFQQKSRT--MLHEATLLEIA-------YAHETMPKGFVGLNAPSCEQ 294
           + ++    +   E +Q SR   M+  +  LEIA       +  E +P G +G+N    +Q
Sbjct: 248 EERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGLIGMNCVLMKQ 307

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+ A
Sbjct: 308 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 358


>gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos
           taurus]
 gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++     S   T G +           
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 301 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F57]
          Length = 341

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 166/316 (52%), Gaps = 15/316 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  +KY WA   + +   N W   EV M DD    +    L+ +E++   R L      +
Sbjct: 33  LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SL  NN++  +   +++PE    L+RQA+EEA+HSH +  ++ S+  +  E+++M+R   
Sbjct: 90  SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149

Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            +  K ++  Q Y +   +P+        ++  L+ LF   ++ EG++FY+GF+   +L 
Sbjct: 150 QLKNKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM+G A+  ++I RDE  HL    ++IN ++ E   L+T +   +   M  +A  +E
Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +         +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++
Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319

Query: 333 K-NFFETRVTEYQQGA 347
           + NFFE RV+ Y +G+
Sbjct: 320 RSNFFEARVSNYAKGS 335


>gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 402

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 164/347 (47%), Gaps = 31/347 (8%)

Query: 5   TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T + P++  +++    N +D+ +L        + P+KY   W+ Y  A  + W   EV +
Sbjct: 63  TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DLA W S   L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E   LFN    +P +  KA WAL +             
Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWI------------ 227

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            +AD     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 228 -NADNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  K  QQ+   ++ +A  +E  +  + +P   +G+N    +QY++F
Sbjct: 287 CLMFS-------HLTNKPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +A+R    +G   ++   ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQK 384


>gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
          Length = 325

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 32/324 (9%)

Query: 34  LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K + AC   W   E+ +  DL  W SK  L DDER  IK  L FFA+
Sbjct: 17  IFPIQHNDIWEWYKKMEAC--FWTAEEIDLHQDLTDWNSK--LNDDERYFIKHILAFFAA 72

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE E   ++R 
Sbjct: 73  SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKDQLFRA 132

Query: 152 V---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           +   P+I  KA+WAL++ ++ S              F + L  F  V EG++F   F  I
Sbjct: 133 IEVFPAIKKKADWALKWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSI 177

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L +   M G+    + I RDE +H +F       + + N HL  K  +++ R ++ +A
Sbjct: 178 FWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNKHLVNKVSKERIREIIVDA 231

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E  +  E++P   +G+N+    QY++F+ +R   ++  E  +  T NPF +M ++I 
Sbjct: 232 LNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TANPFDFM-DMIS 289

Query: 329 LKKEKNFFETRVTEYQQGAELKWD 352
           L+ + NFFE RV +YQ+   +  D
Sbjct: 290 LQGKTNFFEKRVGDYQKAGVMDQD 313


>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
 gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
          Length = 412

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 148/317 (46%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  +++ ER  I R L FFA+S+
Sbjct: 101 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWNNK--MSEGERYFISRVLAFFAASD 158

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 159 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSRDTEESEFLFNAIE 218

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++ Q              D     +  V +   EG++F   FA I  
Sbjct: 219 NIPPIKEKAEWAIRWIQD-------------DTALYAERLVAFAAVEGVFFSGSFAAIFW 265

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  +        ++ EA  
Sbjct: 266 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNRPSPDIVERIITEAVS 318

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+NA    QY++F+A+R    +G E  +  T NPF +M E I L 
Sbjct: 319 IEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT-NPFDFM-ENISLA 376

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 377 GKTNFFEKRVSDYQKAG 393


>gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           phagocytophilum HZ]
 gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma
           phagocytophilum HZ]
          Length = 323

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 160/315 (50%), Gaps = 17/315 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ +
Sbjct: 12  PFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 69  EVNNCYMKHYSNIFRP-TEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +         G K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYDYMQRFEEC------RRGDK---RHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDESLH +  I + N    EN  +W  + +Q+         +LE 
Sbjct: 178 FGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLED 237

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G V GL+A   ++Y++FIANRR  Q+ LEP++   ENP PW+ E+++  + 
Sbjct: 238 EFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQGA 347
            NFFE RVTEY + A
Sbjct: 298 TNFFENRVTEYARAA 312


>gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
          Length = 326

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   WE Y     + W   E+ +Q D+  WK+K  L+ DE+  IK  L FFA+S+
Sbjct: 17  LFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKTK--LSKDEQYFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   D+ E   LF    
Sbjct: 75  GIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDDDKEKDLLFKAIE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P+I  KA+WALQ+ ++ S              F + L  F  V EG++F   F  I  
Sbjct: 135 NFPAIKKKADWALQWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIFW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F       + + N HL  +  +++ R ++ +A  
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNEHLVNQVPKERIRAIIVDALT 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+    QY++F+A+R   ++G +  +  T NPF +M ++I L+
Sbjct: 234 IEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TANPFDFM-DMISLQ 291

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 292 GKTNFFEKRVGEYQKAG 308


>gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
 gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
          Length = 325

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 28/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   WE Y     + W   E+ +  DL  W +K  LT+DE+  IK  L FFA+S+
Sbjct: 17  IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTK--LTEDEKYFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   D+ E   LF    
Sbjct: 75  GIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDVEKDRLFKAIE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P+I  KA+WAL++  + S              F + L  F  V EG++F   F  I  
Sbjct: 135 VFPAIKKKADWALRWIDSDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F +       + N HL  K    + + +L +A  
Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFAV------HLHNHHLVNKVPPARIKEILLDALT 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+NA    QY++F+ +R   ++GLE  F  T NPF +M ++I L+
Sbjct: 234 IEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-NPFDFM-DMISLQ 291

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV EYQ+   L
Sbjct: 292 GKTNFFEKRVGEYQKAGVL 310


>gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 376

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 28/322 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  A  + W   EV +  D   W++   L+D ER  I R L FFA+S+
Sbjct: 69  IFPIKYHDIWDFYKRAVASFWTVEEVDLSKDYQHWEN---LSDGERFFISRVLAFFAASD 125

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E +HS  +  ++ +   D+ E   LFN   
Sbjct: 126 GIVNENLVERFAQEVQVPEARFFYGFQIMIENIHSEMYSKMVETYIRDDNERKKLFNAIN 185

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   I  KA+WAL++     +P            + + L  F  V EG++F   FA I  
Sbjct: 186 EFEFIKKKADWALKWIADKQAP------------YAERLIAFAAV-EGIFFSGSFAAIFW 232

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  K  +++   ++ EA  
Sbjct: 233 LKKRGLMPGLTHSNELISRDEGLHRDFACLMFS-------HLKKKPNKERIYEIIREAVK 285

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  E +P G +G+N     QY++++A+    ++    L+   ENPF +M+  I ++
Sbjct: 286 IEQEYLTEALPVGLIGMNCELMSQYIEYVADHLLTELKCPKLYN-MENPFDFMAR-ISIE 343

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
            + NFFE RV+EYQ+   L  D
Sbjct: 344 AKTNFFEKRVSEYQKAGVLSTD 365


>gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 109

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 1   QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 61  LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109


>gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           massiliae MTU5]
 gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           massiliae MTU5]
          Length = 336

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 13  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 70  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 127

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              DA ++    L VF    EG+  +  FA +L+  R
Sbjct: 128 EMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 175

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 176 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 235

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 236 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 291

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 292 GVEHTNFFENRATEYSKAA 310


>gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 342

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y W ++ +L+    HW+P EVP+ DD+  W+    LT  E+ ++ +   FF  ++  
Sbjct: 35  PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQ--KNLTQSEKNLLTQIFRFFTQADVE 92

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V  N  L  Y  +  P E    +   A  E VH   + +++ ++G+ E E   F  Y+E+
Sbjct: 93  V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 151

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q     S         ++    + VF    EG+  +  FA +L+  
Sbjct: 152 KD-------KYDYMQNFDMSS--------KKDIALTVAVFSAFTEGLQLFASFAILLNFP 196

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTML-HE 267
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT E +    +  RT++ HE
Sbjct: 197 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 256

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +++A+    M     GL A   + Y++FIANRR  Q+GLEP++   +NP  W+  ++
Sbjct: 257 DAFIDLAFEMGPMQ----GLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSML 312

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           +  +  NFFE R TEY + A
Sbjct: 313 NAVEHMNFFEGRSTEYSKAA 332


>gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 340

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 152/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D+  W+S   L++ E+  I   L FFA+S+
Sbjct: 31  MFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASD 87

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  E   LFN   
Sbjct: 88  GIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 147

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA WAL + Q+ +              F + L  F  V EG++F   F  I  
Sbjct: 148 SISCVAGKAKWALDWIQSSTL-------------FAERLIAFACV-EGIFFSGSFCAIFW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++ + P  W     QK   ++HEA  
Sbjct: 194 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP--W-----QKVHHIVHEAVE 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+NA    QY++F+A+R    +G E  +   ENPF WM E I L+
Sbjct: 247 IETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGYERKYN-VENPFDWM-EFISLQ 304

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+ +
Sbjct: 305 GKANFFERRVGDYQKAS 321


>gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 336

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 163/325 (50%), Gaps = 32/325 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGFF 89
           P  Y WA+E + +    HW+P EVP+ DD+  WK       K+ LT  E+ ++ +   FF
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRFF 71

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFN 147
             ++ +  NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++
Sbjct: 72  TQAD-IEVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YS 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            + +   +  K ++  Q+              DA ++    L VF    EG+  +  FA 
Sbjct: 129 AFLKYKEMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAI 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRT 263
           +L+  R NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T
Sbjct: 177 MLNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTT 236

Query: 264 MLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           ++H E   +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW
Sbjct: 237 IVHFEDAFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPW 292

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347
           + E+++  +  NFFE R TEY + A
Sbjct: 293 LDEMLNGVEHTNFFENRTTEYSKAA 317


>gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
 gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
          Length = 325

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 167/334 (50%), Gaps = 32/334 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+K+   W W K + AC   W   E+ + +DL+ W +K  L+ DER  
Sbjct: 7   ILQENKDRFVIFPIKHHDIWDWYKKMEAC--FWTAEEIDLHEDLSDWNNK--LSADERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   +
Sbjct: 63  LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++ ++ S              F + L  F  V EG
Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIESDS--------------FAERLIAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + NQ      HL  +  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNQ------HLVNQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +K R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +  + N
Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M ++I+L+ + NFFE RV+EYQ+   +  D
Sbjct: 281 PFDFM-DMINLQGKTNFFEKRVSEYQKAGVMNKD 313


>gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 337

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y W ++ +L+    HW+P EVP+ DD+  W+    LT  E+ ++ +   FF  ++  
Sbjct: 30  PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQ--KNLTQSEKNLLTQIFRFFTQADVE 87

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V  N  L  Y  +  P E    +   A  E VH   + +++ ++G+ E E   F  Y+E+
Sbjct: 88  V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q     S         ++    + VF    EG+  +  FA +L+  
Sbjct: 147 KD-------KYDYMQNFDMSS--------KKDIALTVAVFSAFTEGLQLFASFAILLNFP 191

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTML-HE 267
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT E +    +  RT++ HE
Sbjct: 192 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 251

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +++A+    M     GL A   + Y++FIANRR  Q+GLEP++   +NP  W+  ++
Sbjct: 252 DAFIDLAFEMGPMQ----GLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSML 307

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           +  +  NFFE R TEY + A
Sbjct: 308 NAVEHMNFFEGRSTEYSKAA 327


>gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           conorii str. Malish 7]
 gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. Iowa]
 gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           africae ESF-5]
 gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
 gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii
           str. Malish 7]
 gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           rickettsii str. Iowa]
 gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae
           ESF-5]
 gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
          Length = 328

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              DA ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRTTEYSKAA 309


>gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis ER-3]
 gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188]
          Length = 413

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 162/346 (46%), Gaps = 35/346 (10%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG+  ++A E  +  +  R +        L PLKY   W+ Y  A  + W   E+ +  D
Sbjct: 70  TGMKALEAEEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E
Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYGFQIMME 179

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ +            D 
Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------------DK 227

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 228 ESSFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL 286

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            +       HL  +   +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+
Sbjct: 287 FS-------HLRHRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVAD 339

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           R    +G + ++  T NPF +M   I L  + NFFE RV +YQ+  
Sbjct: 340 RLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAG 383


>gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
 gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
          Length = 328

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+K+   W+ Y     + W   E+ +  DL  WK+K  L DDER  IK
Sbjct: 8   ILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWKNK--LNDDERYFIK 65

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE 
Sbjct: 66  HILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF+     P+I  KA+WAL++ +   SPSF            + L  F  V EG++
Sbjct: 126 EKDILFHALENFPAIRKKADWALKWIE---SPSFA-----------ERLIAFAAV-EGIF 170

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE +H ++       + + N HL  K  +++
Sbjct: 171 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNHHLINKVPKER 224

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  T NPF
Sbjct: 225 ITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYNST-NPF 283

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE RV EYQ+  
Sbjct: 284 DFM-DMISLQGKTNFFEKRVAEYQKSG 309


>gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
 gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
          Length = 408

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   WE Y  A  ++W   EV +  DL  WK+   L ++E+  IK  L FFA S+
Sbjct: 105 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  NI       + + E R +   Q   E VH  T+  +I      G ++ +LF   +
Sbjct: 162 GIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP I  KA+WA+++  T S            + F + LF F  V EG++F   F  I  
Sbjct: 222 TVPCIQKKADWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIYW 268

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F +++   ++I       K   +   +++ EA  
Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRI-------KPTTETIHSIVKEAVE 321

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++++R   QIG+ P++  ++NPF +M E I L 
Sbjct: 322 IEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIWN-SKNPFDFM-ENISLD 379

Query: 331 KEKNFFETRVTEY 343
            + NFFE RV +Y
Sbjct: 380 GKTNFFEKRVGDY 392


>gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum
           lavamentivorans DS-1]
 gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans
           DS-1]
          Length = 319

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 165/319 (51%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +L+    HW+P EVP+ DD+  W  K  LT+ ER ++ +   FF  ++  
Sbjct: 12  PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSKK--LTEGERNLLTQIFRFFVQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           V NN  +  Y  +  P   Q +L  AF   E VH   + +++ ++G+ E E +  + +  
Sbjct: 70  V-NNCYMKHYSRVFKPTEVQMML-AAFSNIETVHISAYSHLLDTIGMPEAE-YEAFLKYE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++              +   +  + L VF    EG+  +  FA +++  R
Sbjct: 127 QMKTKFDYMQEWGV------------ETKADIAKTLAVFGGFTEGVQLFASFAILMNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTMLH-EA 268
            NKM G+ +   +  RDE+LH    + +      ENP +WT+E +    +   T++H E 
Sbjct: 175 FNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETIIHHED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +++A+   ++     GL+A   + Y+++IA+RR  Q+ L+P+++  +NP PWM E+++
Sbjct: 235 AFIDLAFEMGSIE----GLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + +
Sbjct: 291 GIEHTNFFENRATEYSKAS 309


>gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica]
 gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica]
          Length = 403

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  D+  W+  N L +DER  I   L FFA+S+
Sbjct: 89  LFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLNNDERFFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 147 GIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKERTYLFNAIE 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D +  F + L  F  V EG++F   FA I  
Sbjct: 207 TIPCIKKKADWALKWIS------------DEESTFGERLIAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLENRPSKKIVEDVIVEAVG 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P G +G+NA    QY++F+A+R    +G   ++  T NPF +M E I L 
Sbjct: 307 IEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKVYNST-NPFDFM-ENISLA 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 365 GKTNFFEKRVSDYQKAG 381


>gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit
           [Bacteriovorax marinus SJ]
          Length = 322

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 158/332 (47%), Gaps = 33/332 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L PLKY   +E Y +     W   E+    D+  W+    L  DE+  IK
Sbjct: 4   ILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWEK---LNKDEQHFIK 60

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+ L  Y  +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 61  HILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPK 120

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + ELF+     P +  KA+WA+++ Q+  S             F + L  F  + EG++
Sbjct: 121 EKDELFHAVTHFPFVEKKADWAMKWMQSKRS-------------FAERLIAFAAI-EGIF 166

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    ++I RDE LH  F   +          L T E Q  
Sbjct: 167 FSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHI--------HELLTPEEQLN 218

Query: 261 SRT---MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             T   ++ EA  +E  +  E +P   +G+NA    +Y++F+A+   +++G E  +  TE
Sbjct: 219 KETITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TE 277

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM E+I L+ + NFFE RV+EYQ+   L
Sbjct: 278 NPFDWM-ELISLEGKTNFFEKRVSEYQKPGVL 308


>gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
 gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
          Length = 328

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 32/329 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+++   W W K   AC   W   E+ +  DL+ W +K  L+DDE+  
Sbjct: 8   ILKENKDRFVIFPIQHHDLWEWYKKCEAC--FWTAEEIDLHQDLSDWNNK--LSDDEKYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++   + SPSF            + L  F  V EG
Sbjct: 124 EKEKNVLFQAIENFPAIKKKADWALKW---IESPSFA-----------ERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++       + + N HL  K  +
Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNNHLVNKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++  A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E ++  T N
Sbjct: 223 ERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVYNST-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           PF +M ++I L+ + NFFE RV+EYQ+  
Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAG 309


>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
 gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
          Length = 422

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N +T++ER  I R L FFA+S+
Sbjct: 109 LFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMTENERFFISRVLAFFAASD 166

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 167 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADHLFNAIE 226

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++ Q            D D  F + L  F  V EG++F   FA I  
Sbjct: 227 TIPEIKEKAEWAIRWIQ------------DKDALFAERLVAFAAV-EGIFFSGSFAAIFW 273

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K   +    ++ EA  
Sbjct: 274 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLNNKPDTEIVEKIITEAVE 326

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L 
Sbjct: 327 IEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKYYNVS-NPFDFM-ENISLA 384

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 385 GKTNFFEKRVSDYQKAG 401


>gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 342

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 167/321 (52%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K ENPH++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEEFRQMMRIGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 422

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   E+ +  D+  WK+K  L ++ER  I R L FFA+S+
Sbjct: 111 MFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWKNK--LNENERFFISRILAFFAASD 168

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 169 GIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 228

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++              + D     +  V +   EG++F   FA I  
Sbjct: 229 NIPQIKKKADWAIRWI-------------NDDNALFAERLVAFAAVEGVFFSGSFASIFW 275

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +   +    ++ EA  
Sbjct: 276 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLENRPDPKIVEKIISEAVE 328

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R    +G E ++K T NPF +M E I L 
Sbjct: 329 IEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT-NPFDFM-ENISLA 386

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 387 GKTNFFEKRVSDYQKAG 403


>gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 353

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W+ Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+
Sbjct: 46  IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHVLAFFAASD 102

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++ +            D +  F + +  F  V EG++F   FA I  
Sbjct: 163 TMPCVKKKADWALKWIE------------DRESTFGERVVAFAAV-EGIFFSGSFAAIFW 209

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       +L  +  +++ R ++  A  
Sbjct: 210 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNRPSEERVREIIVNAVE 262

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P G +G+N    +QY++F+A+R   ++G   +F + ENPF +M E I L+
Sbjct: 263 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFSKVF-HAENPFDFM-ENISLE 320

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+ A
Sbjct: 321 GKTNFFEKRVSEYQRFA 337


>gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus
           norvegicus]
 gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus
           norvegicus]
          Length = 351

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 28/340 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   LFN    +P +  KA+WAL++     S   T G +        
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER-------- 186

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 187 --VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ---- 240

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              +L  K  +++   ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 241 ---YLVNKPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 344

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 173/338 (51%), Gaps = 21/338 (6%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +  KR++N  + ++N    +KY W  + Y    NN W+P EV +  DL   K    L ++
Sbjct: 17  ISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLEE 73

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER+   + L F    +S+   N+   I  +++  E    L  Q+F+EAVHS ++ Y++ S
Sbjct: 74  ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDS 132

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   E   E+   +++   I  K N  +   Y + + +P+        +   L+ L   Y
Sbjct: 133 ICSPEKRNEILYQWKD-DDILLKRNKFIGDLYNEFIENPT--------EYNLLRTLMANY 183

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ ENP L+
Sbjct: 184 IL-EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENPELF 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+E + + R M+      EI + H  +     G+N    E Y++++ N+R  +I L PLF
Sbjct: 243 TEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNKRLKEINLSPLF 302

Query: 314 KYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           K  + NP  W+  + +    K +FFE R T Y +   L
Sbjct: 303 KEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTL 340


>gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 410

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 161/349 (46%), Gaps = 27/349 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A++  + P  A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 52  ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +   D  +   LFN    +P I  KA+WAL++             
Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWIS----------- 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F   L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 219 -DKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         +   ++ R ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 277 CLLFSLLN-------NRPSNEEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +A+R    +G   ++  T NPF +M E I L  + NFFE RV +YQ+  
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAG 376


>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
 gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
          Length = 347

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 155/317 (48%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D   W+S   LTD+E+  +   L FFA+S+
Sbjct: 36  MFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAKHWES---LTDNEKHFVSHVLAFFAASD 92

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +   D   + +LFN   
Sbjct: 93  GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDNEVKAKLFNAIE 152

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++              D+ Q F + +  F  V EG++F   F  I  
Sbjct: 153 TIPCVAKKADWALRWI-------------DSSQSFAERIVAFACV-EGIFFSGSFCAIFW 198

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + + +       K  +++ + ++ +A  
Sbjct: 199 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLNV-------KLDEKRVKEIVSDAVE 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +    VG+NA    QY+ F+A+R    +G   LF    NPF WM ++I L+
Sbjct: 252 IERQFVCEALSCDLVGMNARLMSQYIDFVADRLMVVLGYNKLFNAI-NPFDWM-DLISLQ 309

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+ +
Sbjct: 310 GKTNFFEKRVGEYQKAS 326


>gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
 gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
          Length = 342

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 173/329 (52%), Gaps = 18/329 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           +++ +L  +KY WA++ Y +    N W+P E+ M +D   ++    L+  E+   +  L 
Sbjct: 26  TNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQYE--RVLSAHEKRAYEMVLS 83

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145
           F  + +S   N ++    R L+ PE    +  Q F+EA+HS+++Q+I+ S+   +   E+
Sbjct: 84  FLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALHSYSYQFILESVVDPVKADEI 142

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYVVFEGMWFYTG 204
           +N +RE        +  L     + +  +    +  D+E FL+ +F  YV+ E ++FY+G
Sbjct: 143 YNYWRE--------DKVLMERNRVIADLYNDFVRKQDEETFLKAVFGNYVL-ESLYFYSG 193

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA   +LGR  KM+   +Q +YI RDE  H++   ++I  +K ENP L+T E ++  +  
Sbjct: 194 FAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTLKKENPELFTPEMEKWVKEF 253

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWM 323
              A   EI +         +G+N    ++Y++++AN R  QIG EP+F   TENP  W+
Sbjct: 254 FRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLTQIGYEPVFPDVTENPMKWI 313

Query: 324 SEVIDLKKEK-NFFETRVTEYQQGAELKW 351
                +   K +FF+ +   Y + +ELKW
Sbjct: 314 DTFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 325

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 156/321 (48%), Gaps = 28/321 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   ++ Y  A    W   EV +  D+  W+ K  L DDER  IK  LGFFA S+ 
Sbjct: 20  FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWREK--LNDDERHFIKHILGFFAGSDG 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  N+       +++P  R +   Q + E+VHS  +  ++ +L  DE E   LF     
Sbjct: 78  MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA +Y                D+ F + L V +V  EG+ F   F  I  L
Sbjct: 138 IPAVGKKAAWASKYFSR-------------DRSFAERL-VAWVCVEGLLFSGSFCAIFWL 183

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + +  K+EN     K      ++++ EA   
Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLDVVKSIVEEAVAN 236

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+N+    QY++F+A+R    +G    F   ENPF +M E+I L+ 
Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294

Query: 332 EKNFFETRVTEYQQGAELKWD 352
           + NFFE RV+EYQ+   +  D
Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315


>gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
 gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
          Length = 354

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA   Y +  NN W+P E+ + +D+   K  + LT  ER    + + F    +S+ 
Sbjct: 44  IKYDWANVMYRTMLNNFWIPEEISLGEDI---KQFSYLTAGERKAFDKIISFLNFLDSIQ 100

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
             N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +RE P 
Sbjct: 101 CENLP-NLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTNPVTRDKIYDEWREDPI 159

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    PS         + F++ +   Y++ EG++FY+GF+   +L R
Sbjct: 160 LLRRNKFIADMYQRFADDPS--------TENFVRSVMANYIL-EGIYFYSGFSFFYTLAR 210

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++  ENP ++T E + + R M+   TL EI
Sbjct: 211 QGKMTATSTIFKYINRDEITHLVLFQNIIRELMKENPEIFTDELKGELREMVKVGTLNEI 270

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +G+N    E+Y+++++N R   IGL   F + TENP  W+    +L   
Sbjct: 271 EWGQYVTNNEILGINNELIERYIKYLSNLRLRAIGLPVWFPEITENPMAWIESFSNLNAT 330

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 331 KTDFFEAKVTNYTKAAAFDFD 351


>gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus
           scrofa]
          Length = 351

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            E      ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N
Sbjct: 23  SENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---N 79

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  + 
Sbjct: 80  RLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYS 139

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  +   LFN    +P +  KA+WAL++              D    F + +
Sbjct: 140 LLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRW------------IADRKATFGERV 187

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +        
Sbjct: 188 VAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------ 240

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +L  K  + + R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G 
Sbjct: 241 -YLVNKPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGF 299

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 300 SKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335


>gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis]
 gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 378

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 28/334 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L
Sbjct: 52  KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWEA---L 108

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA WAL++     +P            F + +  
Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP------------FCERIVA 216

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 217 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 268

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + 
Sbjct: 269 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +FK +ENPF +M E I L+ + NFFE +V EYQ+
Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQK 360


>gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum]
 gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum]
          Length = 374

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 160/317 (50%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+KY  A  + W   EV +  DL  WK+K  L  DER  I   L FFA+S+
Sbjct: 67  VFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWKNK--LNSDERYFISHVLAFFAASD 124

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   +  E   LFN   
Sbjct: 125 GIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLIETYISEPQEKEFLFNAIE 184

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +   ++S + T G +           V +   EG++F   FA I  
Sbjct: 185 TLPCVKKKADWALLW---INSKNATFGER----------IVAFAAVEGIFFSGSFASIFW 231

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L + N M G+    + I RDE LH +F   + +       HL  K  +++ ++++ +A  
Sbjct: 232 LKKRNLMPGLTFSNELISRDEGLHCDFACLMFS-------HLVQKPSKERIQSIIQDAVK 284

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++F+A+R   ++G E ++  ++NPF +M+ +I  +
Sbjct: 285 IEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKIYN-SQNPFDFMT-IISNE 342

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 343 GKTNFFEKKVGEYQKSG 359


>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
          Length = 400

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 152/330 (46%), Gaps = 27/330 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +LN   D   L P+KY   W+ Y  A  + W   E+ +  DL  W   N L ++ER 
Sbjct: 75  DEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRLNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V         PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P I  KA WAL++                 +    +  V +   E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIAN-------------SEALFAERLVAFAAIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLNHKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G + ++   E
Sbjct: 293 PEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVAFGNKKVYN-VE 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF +M E I L  + NFFE RV++YQ+  
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 342

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 162/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + A+  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLARNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E ++K   M+ + T  EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEEKITDMIRQGTENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  +NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A
           [Paracoccidioides brasiliensis Pb03]
          Length = 413

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 154/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PLKY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 91  LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 148

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 149 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 208

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ +            D +  F Q L  F  V EG++F   FA I  
Sbjct: 209 TIPCIRKKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 255

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++    H  + E  QK   ++ EA  
Sbjct: 256 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVA 308

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M   I L 
Sbjct: 309 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLT 366

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 367 GKTNFFEKRVGDYQKAG 383


>gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 329

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 161/344 (46%), Gaps = 37/344 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +SP+   E  ++ +D+R          + P++Y   WE Y  A  + W   EV + DD+ 
Sbjct: 1   MSPLPLAEPLLDENDQRF--------TMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMK 52

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W++   LT DE+  +   L FFA+S+ +V  N+ +     +  PE R +   Q   E +
Sbjct: 53  HWET---LTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENI 109

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I     D  E   LF     +P +  KA+WAL++              D+  
Sbjct: 110 HSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKADWALKWI-------------DSSD 156

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F + L  F  + EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 157 SFAERLLAFACI-EGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFS 215

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +         K  ++  R ++ EA  +E  +  +++P   VG+NA     Y++++A+  
Sbjct: 216 MLN-------NKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHL 268

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +GL   +  T NPF WM E+I L+ + NFFE RV EYQ+  
Sbjct: 269 FCSLGLAKEYN-TTNPFDWM-ELISLQGKTNFFEKRVGEYQKAG 310


>gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 342

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 162/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA   Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANTLYRTMLNNFWIPEEISLNEDI---KQFPYLTDSERRAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDST 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S           +  FL  +   Y++ EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSDDP-------NEGNFLHTIVANYIL-EGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    +++ +++ E P L+TKE       M+ +    EI 
Sbjct: 200 GKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAHIADMIRQGAENEIK 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL PL+ + ++NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNPMEWIESFSNLNGTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 338

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 156/324 (48%), Gaps = 29/324 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           A S+   + P+KYG  WE Y  A  + W   EV + DD+  W+    L+DDE+  I   L
Sbjct: 20  AGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWEK---LSDDEKHFISHIL 76

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
            FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D  +  
Sbjct: 77  AFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKK 136

Query: 145 -LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            LF     +P +  KA+WAL++ +  SS +F             +  + +   EG++F  
Sbjct: 137 YLFEAMENIPCVAKKADWALKWIE--SSATFA------------ERLIAFACIEGIFFSG 182

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            F  I  L +   M G+    + I RDE LH +F   + +       +L  K      R 
Sbjct: 183 SFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYS-------YLQNKPDVSIVRQ 235

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ EA  +E  +  + +P   VG+N     +Y++F+A+    Q+GLE  +  T NPF +M
Sbjct: 236 IVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TVNPFEFM 294

Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347
            E+I L+ + NFFE RV EYQ+  
Sbjct: 295 -ELISLQGKTNFFEKRVGEYQKSG 317


>gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS]
          Length = 408

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PLKY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I R L FFA+S+
Sbjct: 89  LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +   +  + ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPGPEAVQAIITEAVE 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT-NPFDFMDN-ISLS 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Meleagris gallopavo]
          Length = 353

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W+ Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+
Sbjct: 46  IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKPDEKYFISHILAFFAASD 102

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++ +   S   T G +           V +   EG++F   FA I  
Sbjct: 163 TMPCVKKKADWALKWIEDRHS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 209

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       +L  +  +++ R ++  A  
Sbjct: 210 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNRPSEERVREIIVNAVE 262

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P G +G+N    +QY++F+A+R   ++G   +F + ENPF +M E I L+
Sbjct: 263 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFSKVF-HAENPFDFM-ENISLE 320

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+ A
Sbjct: 321 GKTNFFEKRVSEYQRFA 337


>gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 361

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+
Sbjct: 54  IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASD 110

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E +HS  +  +I +   D  +   LFN   
Sbjct: 111 GIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSLLIDTYIKDPQKREFLFNAIE 170

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WALQ+     S   T G +           V +   EG++F   FA I  
Sbjct: 171 TMPCVKRKADWALQWIADRKS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 217

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       +L  K  +++ + ++  A  
Sbjct: 218 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNKPSEERVKEIIINAVE 270

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P G +G+N+   +QY++F+A+R   ++G   +F+ ++NPF +M E I L+
Sbjct: 271 IEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFSKVFQ-SDNPFDFM-ENISLE 328

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+ A
Sbjct: 329 GKTNFFEKRVSEYQRFA 345


>gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides
           posadasii str. Silveira]
          Length = 408

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PLKY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I R L FFA+S+
Sbjct: 89  LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +   +  + ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPGPEAVQAIITEAVE 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT-NPFDFMDN-ISLS 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi]
 gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PL Y   WE Y     + W   EV +  D+  W+    L  +E+  IK  L FFA+S+
Sbjct: 31  LFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWEK---LNSNEQHFIKTVLAFFAASD 87

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +H+  +  +I +L  D+ E   LF+   
Sbjct: 88  GIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNRLFHAID 147

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VPS+  KANWAL++              +++  F + L  F  V EG++F   F  I  
Sbjct: 148 TVPSVQKKANWALKWI-------------NSENLFAERLLAFACV-EGIFFSGSFCSIFW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   + + +K      +TK  QQ   ++++EA  
Sbjct: 194 LKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSLVYEAVE 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+   +QY++ +A+R    IG E ++  + NPF WM+ +I + 
Sbjct: 248 IEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN-IISVS 305

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE +V EY + 
Sbjct: 306 GKTNFFEKKVGEYAKA 321


>gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 350

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 179/338 (52%), Gaps = 19/338 (5%)

Query: 21  DKRMLNAR-SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++R++N   +++ +L  +KY WA++ Y +   +N W+P E+P+ +D   ++    L+D E
Sbjct: 25  NRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQYER--VLSDYE 82

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R   +  L F  + +S   + ++    R +S PE    L  Q F+E++H++++Q+I+ S+
Sbjct: 83  RRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIHAYSYQFILESV 141

Query: 139 --GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
              +   E++N +RE   +  +     + Y + +  PS        ++ F++ +   Y++
Sbjct: 142 VDPIKADEIYNYWREDEKLKERNEVVAEVYNEFIRKPS--------EENFIKAVIGNYIL 193

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  ++ E P L++ 
Sbjct: 194 -ESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNLQKEQPELFSP 252

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314
           E ++        A   EI +         +G+N    ++Y++++ N R  QIGLEPL+ +
Sbjct: 253 EIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRITQIGLEPLYPE 312

Query: 315 YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351
            TENP  W+ +   +   K +FF+ +   Y +  ELKW
Sbjct: 313 ITENPMKWIDDFRKINNTKTDFFQRKPQTYAKANELKW 350


>gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 413

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  + +DE+  I   L FFA+S+
Sbjct: 92  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INEDEKYFISHILAFFAASD 149

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN   
Sbjct: 150 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAID 209

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D    F Q L  F  V EG++F   FA I  
Sbjct: 210 TIPCIRKKADWALKWIS------------DEKSSFAQRLVAFAAV-EGIFFSGAFASIFW 256

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  +Q  + ++ +A  
Sbjct: 257 LKKRGLMPGLTFSNELISRDEGLHTDFACLLYS-------HLKNRPSKQVIQDIIVDAVQ 309

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+   +QY++F+A+R    +G + ++K + NPF +M E I L 
Sbjct: 310 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNDKVYK-SSNPFDFM-ENISLG 367

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 368 GKTNFFEKRVADYQKAG 384


>gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
          Length = 344

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 26/317 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E ++ +   HW+ TEVPM +D+  ++ K  LTD ER  + + L FF   +  
Sbjct: 35  PFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQK--LTDSERDFLTKILRFFTQGDID 92

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V+   V +       PE R  L   A  EAVH   + ++I +LGL E  ++N + +  ++
Sbjct: 93  VSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNEFLQYEAM 151

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AK ++            F    +D   +    +  F    EGM  ++ F  +L+  R  
Sbjct: 152 AAKHDF------------FNEVCRDKG-DLAAQIAAFSAFTEGMQLFSSFVMLLNFTRCG 198

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EATL 270
            M G+ +   + + DE+LH      +  +   ENP LWT E + K    +  M+  E   
Sbjct: 199 TMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVMVDLEDKF 258

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +++A+    M +    L       Y+++IA+RR   +GL+ +FK T NP PW+  ++ + 
Sbjct: 259 IDLAFGVSEMKR----LTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAMLGV- 313

Query: 331 KEKNFFETRVTEYQQGA 347
              NFFE RV +Y +GA
Sbjct: 314 THTNFFENRVVDYAKGA 330


>gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris
           CBS 7435]
          Length = 400

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PLKY   W+ Y  A  + W   E+ +  DL  W   N + D+E+  I R L FFA+S+
Sbjct: 88  LFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKFFISRVLAFFAASD 145

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 146 GIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++              D D  F + L  F  V EG++F   FA I  
Sbjct: 206 TIPCIKEKADWAMRWIS------------DDDALFAERLVAFAAV-EGIFFSGSFASIFW 252

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 253 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNRASEEIVEKIITEAVE 305

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G + ++    NPF +M E I L 
Sbjct: 306 IEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYN-VNNPFDFM-ENISLA 363

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 364 GKTNFFEKRVSDYQKAG 380


>gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           [Strongylocentrotus purpuratus]
          Length = 412

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 34/351 (9%)

Query: 2   ANNTGLSPIQAGEKRV--NVDDKRML--NARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
           A +  + P  +G+K V  N +D+ +L  NAR  V  + P++Y   W+ Y  A  + W   
Sbjct: 66  AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFV--IFPIQYHDIWQFYKKAEASFWTAE 123

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DL  W +   L D+ER  I   L FFA+S+ +V  N+V    + +   E R + 
Sbjct: 124 EVDLSKDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFY 180

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +HS  +  +I +   D  +   LFN    +P +T KA WAL +   + S S 
Sbjct: 181 GFQIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNW---IGSDSA 237

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
             GT+           V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 238 DFGTR----------IVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 287

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   +         HL  K  ++  + ++ EA  +E  +  + +P   +G+NA   ++
Sbjct: 288 CDFACLMFK-------HLNNKPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKR 340

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           Y++F+A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 341 YIEFVADRLLVELGCGKIWK-VENPFDFM-ENISLEGKTNFFEKRVGEYQK 389


>gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
 gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
          Length = 376

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DL  W   +GL  +ER  I   L FFA+S+
Sbjct: 69  MFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLKPEERHFISHILAFFAASD 125

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 126 GIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLIDTYIKDPSERDRLFNAVE 185

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL +   +S+ S T G +           V +   EG++F   FA I  
Sbjct: 186 TMPCIKRKADWALNW---ISNRSATFGER----------IVAFAAVEGIFFSGSFASIFW 232

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  K  Q + R ++ +A +
Sbjct: 233 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFS-------HLVNKPSQARVRQIICDAVV 285

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N    ++Y++F+A+R   ++G E ++  +ENPF +M E I L+
Sbjct: 286 IEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKVYN-SENPFDFM-EHISLE 343

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 344 GKTNFFEKRVGEYQKAG 360


>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 329

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 29/332 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L    D   + P++Y   WE Y  A  + W   EV +  DL  W+S   LT DE
Sbjct: 4   IPEEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDE 60

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ + 
Sbjct: 61  KHFISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LF+    VP I  KA WAL++              D  + F + +  F  V
Sbjct: 121 IKDSNEKNRLFHAIETVPCIAKKAEWALKWI-------------DGSESFAERIIAFACV 167

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   + + +K        K
Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLK-------KK 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G    +  
Sbjct: 220 LSEERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNV 279

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           + NPF WM E+I L+ + NFFE RV EYQ+ A
Sbjct: 280 S-NPFDWM-ELISLQGKTNFFEKRVGEYQKAA 309


>gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
 gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
          Length = 330

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 162/329 (49%), Gaps = 32/329 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+++   W W K   AC   W   E+ +Q D+  W+  N L  DER  
Sbjct: 8   ILQENPDRFVIFPIQHDDLWEWYKKQQAC--IWTAEEIDLQVDITDWQ--NSLNSDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   ++R +   P+I  KA+WA+++   + SPSF             +  + +   EG
Sbjct: 124 DAEKDQLFRAIENFPAIKLKADWAMKW---IESPSFA------------ERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F       + + N HL  K  +
Sbjct: 169 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNHHLVNKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  +P++  T N
Sbjct: 223 ERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVYNVT-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           PF +M ++I ++ + NFFE RV EYQ+  
Sbjct: 282 PFDFM-DLIGMEGKTNFFEKRVGEYQKAG 309


>gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 2]
          Length = 324

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 153/313 (48%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+     W+ Y    +  W P E+    D+  W   N L  DE+  IK  L FFASS+
Sbjct: 19  MFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDEQYFIKMILAFFASSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ L     +   E R +   Q   E +HS T+  +I S   D  E   LF+   
Sbjct: 76  GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDSDEKHKLFHSLE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P I  K +WA+++ Q   S SF T              V +   EG++F   F  I  
Sbjct: 136 HFPCIKKKGDWAMKWIQDKKS-SFATR------------LVAFACVEGIFFSGAFCSIYW 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE+LH  F + + N+++        K  ++K R ++ EA  
Sbjct: 183 LKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLE-------KKLNKKKVREIIEEAVT 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R   Q+G + ++  T NPF +M E+I L+
Sbjct: 236 IEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIYA-TNNPFDFM-ELISLE 293

Query: 331 KEKNFFETRVTEY 343
           ++ NFFE+RV+EY
Sbjct: 294 QKTNFFESRVSEY 306


>gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger
           CBS 513.88]
 gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger]
          Length = 396

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 80  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASD 137

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 138 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 197

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 198 TIPCIAKKADWAIKWIQ------------DRESTFAQRLVAFAAV-EGIFFSGSFASIFW 244

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  +Q    ++ EA  
Sbjct: 245 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQVVEDIIVEAVG 297

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M E I L 
Sbjct: 298 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYNAT-NPFDFM-ESISLA 355

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 356 GKTNFFEKRVGDYQKAG 372


>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus]
 gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Oxidizing Conditions. A Fully Occupied
           Dinuclear Iron Cluster.
 gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Reducing Conditions. A Fully Occupied
           Dinuclear Iron Cluster And Bound Acetate.
 gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
 gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus]
 gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus]
 gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus]
 gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus]
 gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus]
 gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus]
 gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus]
 gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus]
 gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus]
 gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus]
 gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  D
Sbjct: 67  SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 230

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 284 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Anolis carolinensis]
          Length = 414

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W+ Y  A  + W   EV +  D   W   N L  +E+  I   L FFA+S+
Sbjct: 107 IFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NKLKSEEKYFISHILAFFAASD 163

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 164 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEERDFLFNAIE 223

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++             +D    F + +  F  V EG++F   FA I  
Sbjct: 224 TMPCVKKKADWALRWI------------RDRKATFGERVVAFASV-EGIFFSGAFAAIFW 270

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  +++ R ++  A  
Sbjct: 271 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVNAVE 323

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+
Sbjct: 324 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFSKVFQ-AENPFDFM-ENISLE 381

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+ A
Sbjct: 382 GKTNFFEKRVSEYQRFA 398


>gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
 gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
          Length = 401

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PLKY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I R L FFA+S+
Sbjct: 82  LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 139

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF    
Sbjct: 140 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFEALD 199

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 200 NIPCIRKKADWAIRWIQ------------DKDSTFAQRLIAFAAV-EGIFFSGSFASIFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       H+  +        ++ EA  
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HIRHRPTPAAVEAIITEAVE 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 300 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYHAT-NPFDFMDN-ISLA 357

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 358 GKTNFFEKRVGDYQKAG 374


>gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays]
 gi|194692834|gb|ACF80501.1| unknown [Zea mays]
 gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER  I 
Sbjct: 17  LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--EALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 134

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++       +K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLR-------SKLDEAR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            RT++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T NPF
Sbjct: 234 VRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-NPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318


>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus]
          Length = 411

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  D
Sbjct: 88  SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 144

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 145 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 204

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 205 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 251

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 252 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 305 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 365 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 393


>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  D
Sbjct: 67  SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 ERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A   + + +  F  
Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT--YGERVMAFAA 231

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 232 V-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 284 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
 gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
          Length = 329

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 6/308 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    E Y       W P E+ +Q D+  +KS   LT  E+ +   ++G+FASSE LV 
Sbjct: 23  RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ +  +D   ++N+  E   +  
Sbjct: 80  NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EGM+FY+ FA   ++    KM
Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  I  ENP +   E F +  +  + +A  LE+ Y 
Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P FK  +NP  ++ +  D+KK  NF
Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318

Query: 336 FETRVTEY 343
           FE   TEY
Sbjct: 319 FEVSSTEY 326


>gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi]
 gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 156/316 (49%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PL+Y   WE Y  A  + W   EV +  D+  W +   LT +E+  IK  L FFA+S+
Sbjct: 31  LFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQHFIKSVLAFFAASD 87

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +H+  +  +I +L  D+ E   LFN   
Sbjct: 88  GIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERHRLFNAID 147

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VPS+  KA WA+++                +  F + L  F  V EG++F   F  I  
Sbjct: 148 TVPSVQKKARWAMKWINN-------------ENLFAERLLAFACV-EGIFFSGSFCSIFW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+A   + I RDE LH +F   + + +K      +TK  QQ   +++ EA  
Sbjct: 194 LKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKLPQQVVHSLVSEAVE 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+   +QY++ +A+R    +G + ++  + NPF WM+ +I + 
Sbjct: 248 IEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-SPNPFDWMN-IISVS 305

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE +V EY + 
Sbjct: 306 GKTNFFEKKVGEYAKA 321


>gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia]
          Length = 355

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 165/348 (47%), Gaps = 31/348 (8%)

Query: 5   TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           T LS +QA +  +N +  D+ +L    +   L P+KY   W  Y     + W   E+ + 
Sbjct: 18  TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LT DE+  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 78  QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E   L +    VP I  KA WA+++              
Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWI------------- 181

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + +  F + L  F  V EG++F   F  I  + + + M G+    + I RDE LH +F  
Sbjct: 182 NENDSFAERLIAFAAV-EGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 240

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
                  +   HL  K   Q+   ++  A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 241 -------LLYKHLVNKMSNQRIHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 293

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           A+R    +G   ++  ++NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 294 ADRLIFALGAPKIYN-SKNPFEWM-DMISLQGKTNFFERRVGDYQKAG 339


>gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Ailuropoda melanoleuca]
          Length = 393

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 70  SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 126

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 127 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 186

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 187 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 233

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 234 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 286

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 287 KPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 346

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 347 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 375


>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
          Length = 335

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 28/330 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+KY   W  Y  A  + W   E+ +  D+  W++K  L D+ER  IK
Sbjct: 9   LLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENK--LNDNERHFIK 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   +  
Sbjct: 67  NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKNPD 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P +  KA+WAL++     S             F + L  F  V EG++
Sbjct: 127 EKKVLFNAIETIPCVKKKADWALRWITNSKS-------------FAERLVAFAAV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + N++   N  L  K  +  
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNKL---NNKLDVKTIE-- 227

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +++ +A   E  +  +++P   +G+N+    +Y++F A+R    +G + ++  + NPF
Sbjct: 228 --SIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SANPF 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            WM E+I L ++ NFFE +V+EY +    K
Sbjct: 285 DWM-EMISLMRKANFFEGKVSEYAKAGVAK 313


>gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
 gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
          Length = 342

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 161/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K   M+ + T  EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGTENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  +NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
 gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
          Length = 408

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 89  LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPEPSAVEAIITEAVT 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYN-TTNPFDFMDN-ISLA 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Clostridium botulinum H04402 065]
          Length = 342

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRMGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
 gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
          Length = 324

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRATEYSKAA 309


>gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces
           cerevisiae]
          Length = 399

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 154/327 (47%), Gaps = 27/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y ++        E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYEASFWTAETAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +         HL  K     
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  ENPF
Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380


>gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
 gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
          Length = 394

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 29/335 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R  + ++ +L+   D   + P+KY   WE Y  A  + W   EV + DD+  W+    L+
Sbjct: 68  RKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LS 124

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D ER  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++
Sbjct: 125 DGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLL 184

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S   D  E   LF+    VP I  KA WA+++               +D  F + L  F
Sbjct: 185 ESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWI-------------GSDSVFSERLVAF 231

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   F  I  L +   M G+    + I RDE LH +F   + + +       
Sbjct: 232 AAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLFSMLN------ 284

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
            T+  + + + ++ EA  +E  +  E +P   +G+N+    QY+QF+A+R    +G    
Sbjct: 285 -TRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFVADRLLVSLGCAKQ 343

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +    NPF +M E+I L+ + NFFE RV +YQ+  
Sbjct: 344 YNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNG 376


>gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
 gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
          Length = 401

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 151/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L +DER  I   L FFA+S+
Sbjct: 84  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISHVLAFFAASD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 142 GIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 201

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 202 NIPCIAKKADWAIKWIQ------------DQESTFGQRLVAFAAV-EGIFFSGSFASIFW 248

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  +Q    ++ EA  
Sbjct: 249 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQVVEDIIVEAVA 301

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G    F  T NPF +M E I L 
Sbjct: 302 IEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYFHST-NPFDFM-ESISLA 359

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 360 GKTNFFEKRVGDYQKAG 376


>gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 339

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +L     HW+P EVP+ DD+  W     L + E+ ++ +   FF  S+  
Sbjct: 32  PFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDWH--RNLNEVEQHLVTQIFRFFTQSDVE 89

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V NN  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 90  V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 147

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            Y  + S         D+ +E  + L  F    EG+  +  FA +L+ 
Sbjct: 148 MKD-------KYDYMHSFSV--------DSKREIAKTLAAFGAFTEGLQLFASFAILLNF 192

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML-----H 266
            R  K+ G+ +   + +RDE+LH    I + +    EN  +WT++ +Q+ R +      H
Sbjct: 193 PRFGKLKGMGQIVSWSVRDETLHCLSIIKLFHVFIDENREIWTEDLRQEIRQICATIVEH 252

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           E   +++A+   ++     GL+A   + Y+++IA+RR  Q+GLEPLF    NP PW+ ++
Sbjct: 253 EDAFIDLAFELGSVE----GLDAAQVKSYIRYIADRRLIQLGLEPLFHVERNPLPWIDDM 308

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           ++  +  NFFE R TEY + +
Sbjct: 309 LNAVEHANFFENRATEYSRAS 329


>gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
          Length = 386

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 28/338 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           Q+  K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W S
Sbjct: 56  QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E   LFN    +P +  KA+WAL +           G K+A      
Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW----------IGDKNAR---YG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL +K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G + +++  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 333 GFDKVYR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 368


>gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 320

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 29/329 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL   K    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E  N++     +P++  KA WA ++    +S                +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P       +
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++N
Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           PF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 277 PFNWM-DLISLQGKTNFFEKRVADYQKSG 304


>gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis
           URRWXCal2]
 gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis
           URRWXCal2]
          Length = 327

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    L   E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRATEYSKAA 309


>gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
 gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
          Length = 324

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 30/333 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+    VP +  KA WAL++    S              F + L  F  V 
Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWIDNGS--------------FAERLVAFAAV- 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   +   +K        K 
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLK-------NKL 217

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T
Sbjct: 218 SQEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E+I L+ + NFFE RV +YQ+   L
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVL 308


>gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 394

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 35/344 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L  ++  E  +N D  R++        + P++Y   +E Y  A  + W   E+ +  DL+
Sbjct: 62  LKEMEKNEPLLNEDKNRLI--------MHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLS 113

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W  K  L  +ER  I R L FFA+S+ +V  N+       +  PE R +   Q   E +
Sbjct: 114 DWNDK--LNSNERFFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENI 171

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   D  E   LFN    +P I  KA WAL++                D+
Sbjct: 172 HSETYSLLIDTYIKDPKESDFLFNAIDYIPQIKEKAEWALRWINN-------------DE 218

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 219 ALFGERLVAFASIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFS 278

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  HL  K        ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R 
Sbjct: 279 -------HLDNKPDPAIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRL 331

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               G E  +K  ENPF +M E I L  + NFFE RV++YQ+ +
Sbjct: 332 LVSFGNEKYYK-VENPFDFM-ENISLAGKTNFFEKRVSDYQKAS 373


>gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 328

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 25/322 (7%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF  
Sbjct: 11  NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFTQ 68

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E     +Y E
Sbjct: 69  GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE----TVYNE 124

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQILS 210
                      LQY        F  G  +  QE +   +  F    EGM  ++ F  +L+
Sbjct: 125 F----------LQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLN 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTML 265
             R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++      + + 
Sbjct: 175 FTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIE 234

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            E   +++A+    M K    L+    + Y+++I +RR   +G++ +FK   NP PW+  
Sbjct: 235 LEDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDS 292

Query: 326 VIDLKKEKNFFETRVTEYQQGA 347
           ++ +    NFFE RV +Y +GA
Sbjct: 293 MLGV-THTNFFENRVVDYAKGA 313


>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa]
 gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 29/332 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W++   LT DE
Sbjct: 4   IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDE 60

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  NI     + +   E R +   Q   E +HS  +  ++ + 
Sbjct: 61  KHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LF+    VP +  KA WAL++              D  + F + L  F  V
Sbjct: 121 IKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------DGGESFAERLIAFACV 167

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K
Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------KK 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ EA  +E  +  +++P   VG+N     QY++F+A+R    +G   ++  
Sbjct: 220 LSEERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNV 279

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 280 A-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309


>gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
 gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
          Length = 327

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+  + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYIQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRATEYSKAA 309


>gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 324

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 30/326 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+++   W+ Y +A  + W   EV +  DL  W++K  L D+ER  I 
Sbjct: 6   LLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQNK--LNDNERFFIS 63

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   D  
Sbjct: 64  RVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKDPA 123

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L      +P +T KA WAL++         T G+      F + L  F  V EG++
Sbjct: 124 EKDYLLRAIETIPCVTKKAKWALRWI--------TKGS------FAERLIAFAAV-EGIF 168

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQ 259
           F   F  I  L +   M G+    + I RDE LH +F   + +N       HL  K  ++
Sbjct: 169 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVN-------HLQNKLSEE 221

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             R ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G   ++  T NP
Sbjct: 222 TIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-NP 280

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345
           F +M E+I L+ + NFFE RV EYQ+
Sbjct: 281 FDFM-ELISLQGKTNFFERRVGEYQK 305


>gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
 gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
          Length = 529

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 210 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 267

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 268 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 327

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 328 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 374

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 375 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 427

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 428 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 485

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 486 GKTNFFEKRVGDYQKAG 502


>gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 325

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 149/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   WE Y  A  + W   EV +  DL  W++   LTD+ER  I   L FFA+S+
Sbjct: 16  MFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWEA---LTDNERHFISHVLAFFAASD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +   D+ E   LFN   
Sbjct: 73  GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQSEKHRLFNAIE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +T KA WAL++              D+   F + +  F  V EG++F   F  I  
Sbjct: 133 TIPCVTRKAEWALKWI-------------DSSGSFAERILAFACV-EGIFFSGSFCSIFW 178

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +         K  + +   ++ EA  
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLN-------NKLSEDRVHEIVCEAVD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +    VG+N     +Y+ F+A+R    +G    +    NPF WM E+I L+
Sbjct: 232 IEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYN-ARNPFDWM-ELISLQ 289

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+ +
Sbjct: 290 GKTNFFEKRVGEYQKAS 306


>gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
 gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
          Length = 344

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 170/334 (50%), Gaps = 19/334 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL   K  N LT+DER 
Sbjct: 20  KRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDL---KDYNKLTNDERT 76

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++ ++  
Sbjct: 77  AYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAVHSQSYSYMLDTICS 135

Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            E   E+   +++   +  +  +  + Y   L +P+         QE L    +   + E
Sbjct: 136 PEKRNEILYQWKDDKILLERNKFIGELYNNFLEAPT---------QENLIKTIMANYILE 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GF    +L R  KM G A++ +YI RDE+ HL    +++ ++++E P ++T E 
Sbjct: 187 GIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQLEQPEIFTDEV 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           + + + M+  A   EI++ +  +     G+N      Y++++ N R   IGL+ +++ + 
Sbjct: 247 KNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKAIGLDAIYEGHD 306

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            NP  W+  + D    K +FFE + T Y +   L
Sbjct: 307 NNPAAWVDILSDANSVKTDFFEAKSTAYAKAGAL 340


>gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
 gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
          Length = 325

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 32/334 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+K+   W W K   AC   W   E+ +  DL  W +K  L DDE+  
Sbjct: 7   ILQENKDRFVIFPIKHQDIWEWYKKQEACI--WTAEEIDLHTDLNDWNNK--LNDDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +  PE + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+     P+I  KA WAL++ ++ S              F + L  F  V EG
Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIESDS--------------FAERLIAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F       + + + H+  K  +
Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHSHHIVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G + ++  + N
Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M ++I L+ + NFFE RV EYQ+   +  D
Sbjct: 281 PFDFM-DMISLQGKTNFFEKRVAEYQKAGVMNSD 313


>gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 327

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 25/322 (7%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF  
Sbjct: 10  NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFTQ 67

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E     +Y E
Sbjct: 68  GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE----TVYNE 123

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQILS 210
                      LQY        F  G  +  QE +   +  F    EGM  ++ F  +L+
Sbjct: 124 F----------LQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLN 173

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTML 265
             R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++      + + 
Sbjct: 174 FTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIE 233

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            E   +++A+    M K    L+    + Y+++I +RR   +G++ +FK   NP PW+  
Sbjct: 234 LEDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDS 291

Query: 326 VIDLKKEKNFFETRVTEYQQGA 347
           ++ +    NFFE RV +Y +GA
Sbjct: 292 MLGV-THTNFFENRVVDYAKGA 312


>gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
 gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
          Length = 408

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 89  LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERYFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
 gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
          Length = 349

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 33/344 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            S +Q G K +N   +++LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL 
Sbjct: 20  FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
             K    L ++E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +
Sbjct: 75  --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132

Query: 127 HSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   DE E  N++     +P++  KA WA ++    +S            
Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS------------ 180

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + +
Sbjct: 181 --FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYS 238

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +  + P       +Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R 
Sbjct: 239 LLDNKLP-------EQMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRL 291

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +G   +F +++NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 292 LECLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 346

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 15/327 (4%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ +L  +KY WA +       N W+P EVP+ DD    K    LT DE+    R L F
Sbjct: 30  TNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDA---KQYLELTADEQWAYDRMLSF 86

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
               +S++  ++   I  +++ PE    L    F EA+HS ++ Y++ S+   E    ++
Sbjct: 87  VIFMDSILTVSMPNLI-NYVTAPEINMCLSIHNFHEALHSKSYGYVLESVVPAERRQYIY 145

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +++RE   +  +  +     Q  +           D+ F++     YV+ EG++FY+GFA
Sbjct: 146 DLWREDRQLLERNRYIANTFQLFAD-------NPTDEHFVRACMAQYVL-EGIYFYSGFA 197

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
              +L R  KM G A + Q+I RDE  H+    +++N ++ E P L+T +     R M+ 
Sbjct: 198 FFYALARMGKMKGTATEIQFINRDEITHVAVFQNILNGLRQERPQLFTPQLDADLRAMIR 257

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A   E+A+A   +     GL+    + Y++ +A++R   +G EPL+    NP  W+   
Sbjct: 258 QAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHLADQRARALGFEPLYGNHPNPIKWVESF 317

Query: 327 IDLKKEK-NFFETRVTEYQQGAELKWD 352
            +L + K +FFETRVT Y +   +  D
Sbjct: 318 SNLNQTKADFFETRVTNYAKSTNIDLD 344


>gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small
           chain B; AltName: Full=Ribonucleoside-diphosphate
           reductase R2B subunit; AltName: Full=Ribonucleotide
           reductase small subunit B
 gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana]
          Length = 333

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 155/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+DER  IK
Sbjct: 9   ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERHFIK 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D  
Sbjct: 67  HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P +T KA WA+++              +  Q F + +  F  V EG++
Sbjct: 127 ERDHLFRAIETIPCVTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++       TK  + +
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKLDEDR 225

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  + NPF
Sbjct: 226 LKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYGVS-NPF 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 285 DWM-ELISLQGKTNFFEKRVGEYQKAS 310


>gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus]
          Length = 386

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  D
Sbjct: 67  SVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 184 YIKDSKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 230

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +FK
Sbjct: 284 KPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleoside-diphosphate reductase R2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum]
          Length = 329

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 29/332 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L +  D   + P++Y   WE Y  A  + W   EV +  D   W++   LT  E
Sbjct: 4   IPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGE 60

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S 
Sbjct: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 120

Query: 139 GLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   ++R V   P +  KA WAL++              D  + F + L  F  V
Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRWI-------------DGSETFAERLVAFACV 167

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++       TK
Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TK 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ +A  +E  +  + +P   VG+N     +Y++F+A+R    +G + L+  
Sbjct: 220 LTEERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN- 278

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 279 AQNPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309


>gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
 gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
          Length = 326

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 32/334 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+++   W W K   AC   W   E+ + +D   W +K  L DDER  
Sbjct: 7   ILQENKDRFVIFPIQHNDLWEWYKKQEAC--IWTAEEIDLSEDANDWNNK--LNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++   + SPSF            + L  F  V EG
Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKW---IDSPSFA-----------ERLIAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F       + + N H+  +  +
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNKHIINQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  T N
Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYNST-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M ++I ++ + NFFE RV+EYQ+   L  D
Sbjct: 281 PFDFM-DMIGMEGKTNFFEKRVSEYQKAGVLNSD 313


>gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
 gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
          Length = 342

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEEFRQMMRMGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 342

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRMGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDGFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           botulinum Ba4 str. 657]
 gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 342

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRIGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8]
           [Aspergillus nidulans FGSC A4]
          Length = 406

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L +DER  I R L FFA+S+
Sbjct: 86  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +H+ T+  +I +   +  +   LF+   
Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWAIKWIQ------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNWRPSKKVVEDIIVEAVA 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  F  T NPF +M E I L 
Sbjct: 304 IEKEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKYFNAT-NPFDFM-ESISLA 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 362 GKTNFFEKRVGDYQKAG 378


>gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio]
 gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Danio rerio]
 gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase protein R2 class
           I; AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio]
 gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio]
          Length = 386

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 28/338 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           Q+  K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W S
Sbjct: 56  QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E   LFN    +P +  KA+WAL +           G K+A      
Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW----------IGDKNAR---YG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLINKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G + +++  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 333 GFDKVYR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 368


>gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
 gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
          Length = 342

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K   M+ +    EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  ENP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
 gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
          Length = 410

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I   L FFA+S+
Sbjct: 84  LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E VHS T+  +I +   +  +   LFN   
Sbjct: 142 GIVNENLVERFSSEVQIPEARCFYGFQIMMENVHSETYSLLIDTYISEPRQRKYLFNAID 201

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D +  F   L  F  V EG++F   FA I  
Sbjct: 202 NIPCIRKKADWALRWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIFW 248

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   + + +         +  ++  R ++ EA  
Sbjct: 249 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------NRPSKESVRAIITEAVE 301

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G   ++  T NPF +M E I L 
Sbjct: 302 IEQEFLSDALPCALLGMNATLMCQYIEFVADRLLLALGNTKVYNAT-NPFDFM-ENISLA 359

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 360 GKTNFFEKRVGDYQKAG 376


>gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
 gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
          Length = 343

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 161/321 (50%), Gaps = 18/321 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L++ E+ ++ +   FF  ++ +
Sbjct: 31  PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 87

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E VH   + Y++ ++G+ E E +  + +  
Sbjct: 88  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 145

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 146 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 196

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          LE 
Sbjct: 197 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSLED 256

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G V GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++  + 
Sbjct: 257 EFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGVEH 316

Query: 333 KNFFETRVTEYQQGA-ELKWD 352
            NFFE RVTEY + A E  WD
Sbjct: 317 TNFFENRVTEYSRAATEGTWD 337


>gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
          Length = 406

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L +DER  I R L FFA+S+
Sbjct: 86  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +H+ T+  +I +   +  +   LF+   
Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWAIKWIQ------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNWRPSKKVVEDIIVEAVA 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  F  T NPF +M E I L 
Sbjct: 304 IEKEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKEYFNAT-NPFDFM-ESISLA 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 362 GKTNFFEKRVGDYQKAG 378


>gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
          Length = 388

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 158/326 (48%), Gaps = 33/326 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   WE Y  A  ++W   EV +  D+  WK+   L D+E+  IK  L FFA S+
Sbjct: 86  VFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LNDNEQKFIKYILAFFAGSD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  NI       +   E R +   Q+  E VH  T+  +I      G ++ +LF   +
Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP I  KANWAL++              D  + F + LF F  V EG++F   F  I  
Sbjct: 203 TVPCIERKANWALKWF-------------DKSRPFAERLFAFACV-EGIFFSGSFCAIFW 248

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F +++   ++        K   +   +++ EA  
Sbjct: 249 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR-------NKPSTETIHSIVKEAVE 301

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++++R   Q+G  P++  ++NPF +M E I L 
Sbjct: 302 IEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIWN-SKNPFDFM-ENISLD 359

Query: 331 KEKNFFETRVTEY----QQGAELKWD 352
            + NFFE RV +Y       AE+ +D
Sbjct: 360 GKTNFFEKRVGDYGKLDDDSAEIGFD 385


>gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis]
 gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis]
          Length = 386

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 28/341 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K   ++D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 53  TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL +           G K A   
Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWI----------GDKQAT-- 217

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 218 -FGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 275

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 276 ------HLIRKPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            ++G + +FK T NPF +M E I L+ + NFFE +V EYQ+
Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368


>gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
          Length = 366

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 163/343 (47%), Gaps = 28/343 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P++     ++  ++ +L +      LLPL+Y   W  Y  A  + W   EV ++ D   
Sbjct: 33  TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W     L  DE+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VH
Sbjct: 93  WAK---LNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL++     SP            
Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP------------ 197

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 198 FCERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS- 255

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  + + R ++ EA  +E  +  + +P   +G+N     QY++++A+R  
Sbjct: 256 ------HLKKKPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVADRLL 309

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            ++G   ++  +ENPF +M E+I L+ + NFFE RV EYQ+  
Sbjct: 310 VELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAG 350


>gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
           Subunit R2
          Length = 332

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 9   GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 65

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 66  ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 125

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 126 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 172

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 173 AVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 225

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 226 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 285

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 286 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 314


>gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. St. Maries]
 gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Mississippi]
 gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Puerto Rico]
 gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Virginia]
 gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale
           str. St. Maries]
          Length = 324

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 161/321 (50%), Gaps = 18/321 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L++ E+ ++ +   FF  ++ +
Sbjct: 12  PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E VH   + Y++ ++G+ E E +  + +  
Sbjct: 69  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSLED 237

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G V GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++  + 
Sbjct: 238 EFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQGA-ELKWD 352
            NFFE RVTEY + A E  WD
Sbjct: 298 TNFFENRVTEYSRAATEGTWD 318


>gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
          Length = 349

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 33/344 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            S +Q G K +N   +++LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL 
Sbjct: 20  FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
             K    L ++E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +
Sbjct: 75  --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132

Query: 127 HSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   DE E  N++     +P++  KA WA ++    +S            
Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS------------ 180

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + +
Sbjct: 181 --FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYS 238

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +  + P       +Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R 
Sbjct: 239 LLDNKLP-------EQIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRL 291

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              +G   +F +++NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 292 LECLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
          Length = 333

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 157/327 (48%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N L++DER  IK
Sbjct: 9   ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSNDERHFIK 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D  
Sbjct: 67  HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P +T KA WA+++              +  Q F + +  F  V EG++
Sbjct: 127 ERDHLFRAIETIPCVTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++       TK  +++
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKLDEER 225

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  + NPF
Sbjct: 226 LKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYGVS-NPF 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 285 DWM-ELISLQGKTNFFEKRVGEYQKAS 310


>gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus]
 gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus]
 gi|301134541|gb|ADK63655.1| M015L [Myxoma virus]
          Length = 322

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E   LF     +  I  KA W  ++             ++ D  + + L  F  V
Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K   P     
Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-HTPS---- 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 220 --EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           T NPF +M E I L+ + NFFE RV++YQ+
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305


>gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2
           [Leptosphaeria maculans]
          Length = 410

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I   L FFA+S+
Sbjct: 83  LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E VHS T+  +I +   +  +   LFN   
Sbjct: 141 GIVNENLVERFSGEVQIPEARCFYGFQIMMENVHSETYSLLIDTYISEPRQRKYLFNAID 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D +  F   L  F  V EG++F   FA I  
Sbjct: 201 NIPCIRKKADWALRWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   + + +        T+  ++  + ++ EA  
Sbjct: 248 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------TRPSKESVQAIITEAVE 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G    +  T NPF +M E I L 
Sbjct: 301 IEKEFLSDALPCALLGMNATLMCQYIEFVADRLLLSLGNTKFYNAT-NPFDFM-ENISLA 358

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 359 GKTNFFEKRVGDYQKAG 375


>gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis]
 gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L  +E
Sbjct: 84  IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 141 RYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA W+L++     +P            + + L  F  V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP------------YCERLVAFAAV 248

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         H+  K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HVVHK 300

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + +FK 
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +ENPF +M E I L+ + NFFE +V EYQ+
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQK 388


>gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53
           inducible) [Ornithorhynchus anatinus]
          Length = 401

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   N L  +E+  I   L FFA+S+
Sbjct: 94  IFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSEEKYFISHILAFFAASD 150

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 151 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPKKREFLFNAIE 210

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+W+L++     S   T G +           V +   EG++F   FA I  
Sbjct: 211 TMPFVKKKADWSLRWIADRQS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 257

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  + K + ++ +A  
Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVKKPSEDKVKEIIIDAVE 310

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P G +G+N    +QY++F+A+R   ++G   +F +++NPF +M E I L+
Sbjct: 311 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVELGFSKVF-HSDNPFDFM-ENISLE 368

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+ A
Sbjct: 369 GKTNFFEKRVSEYQRFA 385


>gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Pongo abelii]
          Length = 449

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 126 DVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 243 YIKDPKEREFLFNAIETLPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431


>gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Anolis carolinensis]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 71  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WA+++           G K A      +  V + 
Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFA 234

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQR 376


>gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
 gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
          Length = 339

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER  I 
Sbjct: 17  LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWD--EALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDA 134

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +   ++       +K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------SKLDEAR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T NPF
Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT-NPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318


>gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus
           norvegicus]
 gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus
           norvegicus]
          Length = 390

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W++   L  DER  I   L FFA+S+
Sbjct: 83  VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++           G K+A      +  V +   EG++F   FA I  
Sbjct: 200 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  A  
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIITNAVR 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G   +FK  ENPF +M E I L+
Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK-VENPFDFM-ENISLE 357

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 358 GKTNFFEKRVGEYQR 372


>gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 330

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   WE Y  A  + W   EV +  D   W++   LTD+ER  I   L FFA+S+
Sbjct: 19  MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWEA---LTDNERHFISHVLAFFAASD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +   D  E   LFN   
Sbjct: 76  GIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDHAEKNRLFNAIE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +T KA WAL++  +  S             F + +  F  V EG++F   F  I  
Sbjct: 136 TIPCVTKKAEWALKWIHSAGS-------------FAERILAFACV-EGIFFSGSFCAIFW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +         K  + +   ++ EA +
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLN-------NKLSEDRVYEIVCEAVV 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +    VG+N     +Y+ F+A+R    +G    +  + NPF WM E+I L+
Sbjct: 235 IEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-SHNPFDWM-ELISLQ 292

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+ +
Sbjct: 293 GKTNFFEKRVGEYQKAS 309


>gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays]
 gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  I 
Sbjct: 17  LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +    G 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    NPF
Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYN-VANPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318


>gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus]
 gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus
           6918VP60-T2]
          Length = 322

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 160/330 (48%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS- 137
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 138 -LGLDEGE-LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            + L E E LF     +  I  KA W  ++             ++ D  + + L  F  V
Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K   P     
Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-HTPS---- 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 220 --EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           T NPF +M E I L+ + NFFE RV++YQ+
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305


>gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1]
          Length = 329

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   W+ Y  A  + W   EV +  DL  W   N L  DE+  IK  L FFA+S+
Sbjct: 22  ILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKDEQFFIKHVLAFFAASD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 79  GIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIETYVNDSAEKDSLFNAIE 138

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA WA+++                D+    +  V +   EG++F   FA I  
Sbjct: 139 TLPAVRRKAEWAMRWISH-------------DKASFGERVVAFAAVEGIFFSGSFAAIFW 185

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + +K        +  +++   ++ +A  
Sbjct: 186 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLK-------KRPSKERVTGIIMDAVE 238

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P G +G+NA   +QY++F+++R    +G E +F  +ENPF +M E I ++
Sbjct: 239 IEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKIFN-SENPFDFM-ESISIE 296

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 297 GKTNFFEKRVGEYQKAG 313


>gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 418

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N R  V  + P+KY   W+ Y  A  + W   E+ +  D+  W   N L D+ER  I 
Sbjct: 95  MENTRRFV--MFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERYFIS 150

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 151 RILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPK 210

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA+WAL++              D D  F + L  F  V EG++
Sbjct: 211 EADFLFNAIENIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV-EGIF 257

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G++   + I RDE LH +F   + +       HL  +   + 
Sbjct: 258 FSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFS-------HLQNRPDPEI 310

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G + ++    NPF
Sbjct: 311 VEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA-NPF 369

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E I L  + NFFE RV++YQ+  
Sbjct: 370 DFM-ENISLAGKTNFFEKRVSDYQKAG 395


>gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
 gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
          Length = 342

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K   M+ +    EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  +NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L  +E
Sbjct: 84  IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 141 RYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA W+L++     +P            + + L  F  V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP------------YCERLVAFAAV 248

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         H+  K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HVVHK 300

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + +FK 
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +ENPF +M E I L+ + NFFE +V EYQ+
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQK 388


>gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 342

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K   M+ +    EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  +NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis]
 gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis]
          Length = 341

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +    
Sbjct: 13  AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 70

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  + 
Sbjct: 71  -LNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEMYS 129

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I SL  D+ E   LFN    +P +  KA+WAL +     +             F + +
Sbjct: 130 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 177

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F         +  
Sbjct: 178 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 229

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +  
Sbjct: 230 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 289

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           + ++   ENPF +M E I L+ + NFFE RV EYQ+  
Sbjct: 290 QKVYN-VENPFDFM-ENISLEGKTNFFEKRVGEYQKSG 325


>gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
           sapiens]
 gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens]
 gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens]
 gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens]
 gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|62702173|gb|AAX93099.1| unknown [Homo sapiens]
 gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens]
 gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct]
          Length = 389

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 66  GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 183 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 229

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 283 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371


>gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Anolis carolinensis]
          Length = 390

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 67  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WA+++           G K A      +  V + 
Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFA 230

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|194690416|gb|ACF79292.1| unknown [Zea mays]
 gi|194704028|gb|ACF86098.1| unknown [Zea mays]
 gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|223943167|gb|ACN25667.1| unknown [Zea mays]
          Length = 339

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  I 
Sbjct: 17  LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +    G 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    NPF
Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYN-VANPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318


>gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 413

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   E+ +  DL  W +K  L ++ER  I R L FFA+S+
Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFISRVLAFFAASD 159

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q              D+    +  V +   EG++F   FA I  
Sbjct: 220 NIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVEGIFFSGSFASIFW 266

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  +   +    ++ EA  
Sbjct: 267 LKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPSPEIVERIITEAVD 319

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T NPF +M E I L 
Sbjct: 320 VEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT-NPFDFM-ENISLA 377

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 378 GKTNFFEKRVSDYQKAG 394


>gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
          Length = 342

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 166/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             K+   +  ++YI RDE  HL    ++I ++K EN H++T+E +++ R M+      EI
Sbjct: 199 QGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRIGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339


>gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
 gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
          Length = 342

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++   +   ++++ +R   +
Sbjct: 89  SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     Q  S         D  +  L    +   + EG++FY+GF+   +L R 
Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K   M+ +    EIA
Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
           +         +GLN    E+Y++++AN R   IGL  L+ +  +NP  W+    +L   K
Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319

Query: 334 -NFFETRVTEYQQGAELKWD 352
            +FFE +VT Y + A   +D
Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339


>gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
 gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
          Length = 332

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 162/325 (49%), Gaps = 26/325 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+K  L++ E+ ++ +   FF  ++ +
Sbjct: 20  PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 76

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E VH   + Y++ ++G+ E E +  + +  
Sbjct: 77  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 134

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 135 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 185

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH    I + N    EN  +W        R  L+ A  + +
Sbjct: 186 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANL----RAELYGACRVIV 241

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           +   E +   F      GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++
Sbjct: 242 SLEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILN 301

Query: 329 LKKEKNFFETRVTEYQQGA-ELKWD 352
             +  NFFE RVTEY + A E  WD
Sbjct: 302 GVEHTNFFENRVTEYSRAATEGTWD 326


>gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens]
 gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens]
          Length = 449

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431


>gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
 gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
          Length = 408

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 89  LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 345

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA++ Y +  NN W+P E+P+ DD    +  + L+DDER    + L F    +SL+
Sbjct: 36  IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
            +N+   I  +++ PE    L   AF+EAVHS ++ Y++ S+       +++N +R    
Sbjct: 93  THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVNPATRDQIYNEWRNDDH 151

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  +    + + + +P+        D+  ++ +   Y++ EG++FY GF     LGR
Sbjct: 152 LLRRNQFITDLFEEFIENPT--------DRNLMKTIVANYIL-EGVYFYAGFGFFFVLGR 202

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM+G   + ++I RDE  HL    ++ ++I  ENP + T + +++   M+  A   EI
Sbjct: 203 QGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIVRENPGIVTPDMEEEFVEMMRTAVQHEI 262

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
           A+         VGL     + Y++++AN R   + L  L+ +  E+P PWM     +   
Sbjct: 263 AWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKEHPMPWMDSFAAINSH 322

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE RVT Y +   L WD
Sbjct: 323 KTDFFEQRVTNYTKAGNLNWD 343


>gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
           sapiens]
          Length = 449

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431


>gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
          Length = 389

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  +
Sbjct: 66  SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKSE 122

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++   +   + T G +           V + 
Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRW---IGDKAATYGER----------VVAFA 229

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 283 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371


>gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 369

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA++ Y +  NN W+P E+P+ DD    +  + L+DDER    + L F    +SL+
Sbjct: 60  IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 116

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
            +N+   I  +++ PE    L   AF+EAVHS ++ Y++ S+       +++N +R    
Sbjct: 117 THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVNPATRDQIYNEWRNDDH 175

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  +    + + + +P+        D+  ++ +   Y++ EG++FY GF     LGR
Sbjct: 176 LLRRNQFITDLFEEFIENPT--------DRNLMKTIVANYIL-EGVYFYAGFGFFFVLGR 226

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM+G   + ++I RDE  HL    ++ ++I  ENP + T + +++   M+  A   EI
Sbjct: 227 QGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRENPGIVTPDMEEEFVEMMRTAVQHEI 286

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
           A+         VGL     + Y++++AN R   + L  L+ +  E+P PWM     +   
Sbjct: 287 AWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKEHPMPWMDSFAAINSH 346

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE RVT Y +   L WD
Sbjct: 347 KTDFFEQRVTNYTKAGNLNWD 367


>gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 1 [Gallus gallus]
          Length = 392

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 31/344 (9%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T L P Q        +++ +L        + P++Y   W+ Y  A  + W   EV +  D
Sbjct: 59  TALCPPQVAR---GAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKD 115

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E
Sbjct: 116 LQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAME 172

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS  +  +I +   D  E   LFN    +P +  KA+WA+++           G K A
Sbjct: 173 NIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI----------GDKKA 222

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                 +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 223 T---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLM 279

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
                    HL  K  +++ + ++  A L+E  +  E +P   +G+N    +QY++F+A+
Sbjct: 280 FK-------HLIRKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVAD 332

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 333 RLMLELGFRKIYK-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 374


>gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative;
           ribonucleotide reductase r2 subunit 1, putative;
           ribonucleotide reductase small subunit 1, putative
           [Candida dubliniensis CD36]
 gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative
           [Candida dubliniensis CD36]
          Length = 413

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   E+ +  DL  W +K  L ++ER  + R L FFA+S+
Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFVSRVLAFFAASD 159

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q              D+    +  V +   EG++F   FA I  
Sbjct: 220 NIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVEGIFFSGSFASIFW 266

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  +   +    ++ EA  
Sbjct: 267 LKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPSPEIVEKIITEAVD 319

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T NPF +M E I L 
Sbjct: 320 VEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT-NPFDFM-ENISLA 377

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 378 GKTNFFEKRVSDYQKAG 394


>gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans
           CBS 112818]
          Length = 408

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 89  LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKNSTFSQRLVAFAAV-EGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPNAVEAIITEAVT 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 365 GKTNFFEKRVGDYQKAG 381


>gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           oryzae RIB40]
 gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
 gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae]
 gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
          Length = 405

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I R L FFA+S+
Sbjct: 86  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +H+ T+  +I +   +  +   LF+   
Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D +  F Q L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWAIRWIQ------------DQESTFGQRLVAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +   Q    ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPDPQIVEDVIVEAVS 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G    F  T NPF +M   I L 
Sbjct: 304 IEKEFLTDALPCALLGMNSNLMCQYIEFVADRLLVALGNNKYFNAT-NPFDFMDN-ISLA 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 362 GKTNFFEKRVGDYQKAG 378


>gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 400

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 164/342 (47%), Gaps = 29/342 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +Q  E +    ++ +L A  +   L P++Y   +E Y  A  + W   E+ +  DL  W 
Sbjct: 63  VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N + ++ER  I R L FFA+S+ +V  N+           E + +   Q   E +HS 
Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   D  E   LFN    +P I  KA WAL++              D++  F 
Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIN------------DSEALFA 228

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F  + EG++F   FA I  L +   M G+    + I RDE LH +F   + + IK
Sbjct: 229 ERLVAFAAI-EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287

Query: 247 IE-NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
            + +P +  K        ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R   
Sbjct: 288 NKPDPAIVEK--------IVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLV 339

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             G E +FK  ENPF +M E I L  + NFFE RV++YQ+ +
Sbjct: 340 AFGNEKVFK-VENPFDFM-ENISLAGKTNFFEKRVSDYQKAS 379


>gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
 gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
          Length = 330

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 30/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++    W+ Y  A  + W   E+ +  DL  W  K  L DDER  I   L FFA+S+
Sbjct: 19  LFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDEK--LNDDERHFITHVLAFFAASD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +     + +PE R +   Q   E +H+ T+  +I +   D  E   LFN   
Sbjct: 77  GIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDTYIKDADEKHRLFNALE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  KA WAL++    S              F + L  F  V EG++F   F  I  
Sbjct: 137 TVPCVKKKAEWALRWIDKGS--------------FAERLIAFAAV-EGIFFSGSFCSIFW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEAT 269
           L +   M G++   + I RDE LH +F   + N  IK + P+       +   +++  A 
Sbjct: 182 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYNSYIKNKLPN-------ETVVSIIKNAV 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+N+    +Y++F+A+R   ++G E  +  T NPF +M E+I L
Sbjct: 235 EIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN-TANPFDFM-EMISL 292

Query: 330 KKEKNFFETRVTEYQQGA 347
           + + NFFE RV+EY +  
Sbjct: 293 EGKTNFFEKRVSEYSKAG 310


>gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis]
 gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 159/341 (46%), Gaps = 28/341 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K     D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 53  TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D    G LFN    +P +  KA+WAL++   +S    T G +     
Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRW---ISDKQATYGER----- 221

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 222 -----VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFR- 275

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++   ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 276 ------HLVHKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            ++G   +FK + NPF +M E I L+ + NFFE RV EYQ+
Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQK 368


>gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
           oxydans 621H]
 gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter
           oxydans 621H]
          Length = 339

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 158/317 (49%), Gaps = 24/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S+  
Sbjct: 27  PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQSDVE 84

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151
           V N+  +  Y  +  P     ++  AF   E +H   + +++ ++G+ E E   F  Y+E
Sbjct: 85  V-NSAYMKYYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYSAFLKYKE 142

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +            + Q+ +         D  +E  + +  F    EG+  +  FA +L+ 
Sbjct: 143 MKD-------KYDFMQSFNI--------DNKREIAKTMAAFGAFMEGLQLFASFAILLNF 187

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NK+ G+ +   + +RDE+LH    I +      EN  +WT EF+++   +       
Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEH 247

Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E A+       G V G+++   ++Y++FIA+RR  Q+GL+P++    NP PW+ ++++  
Sbjct: 248 EDAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAV 307

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE R TEY + +
Sbjct: 308 EHANFFENRSTEYSRAS 324


>gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
          Length = 418

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N L D ER  I R L FFA+S+
Sbjct: 104 LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRLNDSERFFISRVLAFFAASD 161

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +   E R +   Q   E +HS T+  +I +   D  E   LF+   
Sbjct: 162 GIVNENLLERFSNEVQVAEARCFYGFQIMMENIHSETYSLLIDTYIKDPVERDFLFDAIE 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WAL++              D    F + L  F  V EG++F   FA I  
Sbjct: 222 TIPCIKRKAEWALRWIS------------DEHSVFGERLVAFAAV-EGIFFSGSFASIFW 268

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+A   + I RDE +H +F   + + ++   PH  T E       ++ EA  
Sbjct: 269 MKKRGLMPGLAFSNELISRDEGMHTDFACLLFSHLR-RRPHPDTVE------RIIKEAVA 321

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G + L+  T NPF +M ++I L+
Sbjct: 322 IEQEFLTDALPVSLIGMNATLMCQYIEFVADRLLVALGNKKLYNST-NPFDFM-DMISLQ 379

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y +  
Sbjct: 380 GKTNFFEKRVSDYSKAG 396


>gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 331

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 150/318 (47%), Gaps = 31/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   WE Y  A  + W   EV +  D   W++   LTDDER  I   L FFA+S+
Sbjct: 20  MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDERHFISHVLAFFAASD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +   D+ E   LFN   
Sbjct: 77  GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQAEKSRLFNAIE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++  +  S             F + +  F  V EG++F   F  I  
Sbjct: 137 TIPCVARKADWALKWIDSAGS-------------FAERILAFACV-EGIFFSGSFCAIFW 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +          L  K  +++   ++ EA  
Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LINKLSEERVYEIVCEAVE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL 329
           +E  +  E +    VG+N     +Y+ F+A+R    +G     KY   NPF WM E+I L
Sbjct: 236 IEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRK--KYNALNPFDWM-ELISL 292

Query: 330 KKEKNFFETRVTEYQQGA 347
           + + NFFE RV EYQ+ +
Sbjct: 293 QGKTNFFEKRVGEYQKAS 310


>gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Equus caballus]
          Length = 425

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  +
Sbjct: 102 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPE 158

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 159 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 218

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 219 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 265

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 266 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 319 KPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVFR 378

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 379 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 407


>gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis]
          Length = 389

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 66  GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 183 YIKDPKEREFLFNAIETMPCVEKKADWALRWI----------GDKEAT---YGERVVAFA 229

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 283 KPSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371


>gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
          Length = 406

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 153/318 (48%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 85  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149
            +V  N+V      +  PE R +   Q   E +HS T+  +I +  ++E +    LF+  
Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P I  KA+WAL++              D +  F Q L  F  V EG++F   FA I 
Sbjct: 202 DNIPCIRKKADWALRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIF 248

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   + +       HL T+   +    ++ +A 
Sbjct: 249 WLKKRGLMPGLTFSNELISRDEGLHTDFACMLFS-------HLNTRPNPKVIEDIIVDAV 301

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M E I L
Sbjct: 302 AIEQEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKYYNAT-NPFDFM-ENISL 359

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV +YQ+  
Sbjct: 360 AGKTNFFEKRVGDYQKAG 377


>gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 172

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 1/155 (0%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           VNQ+LP K+   W+ +L +  N+W P E+ M  D+  WK  + L+DDE+L++KR LGFFA
Sbjct: 15  VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWKGDD-LSDDEKLLVKRCLGFFA 73

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T      S GL   E+F  Y+
Sbjct: 74  GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            + SI AK ++ +  T  ++   F+T T +  + F
Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIF 168


>gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           prowazekii str. Madrid E]
 gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
           str. Wilmington]
 gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia
           prowazekii]
 gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
 gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           prowazekii Rp22]
          Length = 324

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+  D+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGV------------DNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++      T++H E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E+A+       G  GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++
Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + A
Sbjct: 291 GVEHTNFFENRATEYSKAA 309


>gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
 gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
          Length = 339

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P+++   WE Y  A  + W   EV +  D   W +   L+ DER  I 
Sbjct: 17  LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +    G 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    NPF
Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYN-VANPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318


>gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma
           mansoni]
 gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative
           [Schistosoma mansoni]
          Length = 365

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W  Y  A  + W   EV +  D   W+S   L   ER  I   L FFA+S+
Sbjct: 55  LFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LKVGERHFISYVLAFFAASD 111

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++    + +  PE R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 112 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 171

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA WAL +              D+   F + L  F  V EG++F   FA I  
Sbjct: 172 NLTCVAKKAQWALDWI------------GDSKSTFAERLVAFAAV-EGVFFSGSFAAIFW 218

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   +   I  + P       +++  +++ EA L
Sbjct: 219 LKKRGLMPGLSFSNELISRDEGLHCDFACLLFKHIIKKPP-------KERVESIIREAVL 271

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++FIA+R   ++G E ++ +++NPF +M E I ++
Sbjct: 272 IEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKMY-HSDNPFDFM-ENISIE 329

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 330 GKTNFFEKRVGEYQRAG 346


>gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis]
 gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis]
          Length = 393

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W     LTD+ER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPQERDYLFNAVE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS +   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVMMFR-------HLVQRPSRERIIEIISDAVT 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVGKIYN-TKNPFTFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVGEYQR 375


>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus]
 gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus]
 gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus]
          Length = 390

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W++   L  DER  I   L FFA+S+
Sbjct: 83  VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++           G K+A      +  V +   EG++F   FA I  
Sbjct: 200 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  +  
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIITNSVR 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G   +FK  ENPF +M E I L+
Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK-VENPFDFM-ENISLE 357

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 358 GKTNFFEKRVGEYQR 372


>gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis]
 gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +    
Sbjct: 56  AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  + 
Sbjct: 114 -LNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I SL  D+ E   LFN    +P +  KA+WAL +     +             F + +
Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 220

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F         +  
Sbjct: 221 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 272

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +  
Sbjct: 273 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 332

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           + ++   ENPF +M E I L+ + NF+E RV EYQ+  
Sbjct: 333 QKVYN-VENPFDFM-ENISLEGKTNFYEKRVGEYQKSG 368


>gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella
           succinogenes]
          Length = 283

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 151/277 (54%), Gaps = 12/277 (4%)

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+HS ++ 
Sbjct: 11  GLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 70

Query: 133 YIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            ++ S+  +  E++ M+R    + +K +  A  Y +   +P+        D   L+ +F 
Sbjct: 71  VMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPT--------DSAMLKAMFA 122

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN +K E P 
Sbjct: 123 NQIL-EGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALKKERPD 181

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+TK  +++   M  +A  +E A+         +GL +    +Y+Q++A+ R  ++G+ P
Sbjct: 182 LFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKRVGM-P 240

Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           +    ++P  W+ +     ++K NFFE  VT Y +G+
Sbjct: 241 ILYNAKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 277


>gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia angusta DL-1]
          Length = 408

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 148/317 (46%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L D+ER  + R L FFA+S+
Sbjct: 94  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERYFVSRVLAFFAASD 151

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 152 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVKDPKEAEFLFNAIE 211

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D +  F + L  F  V EG++F   FA I  
Sbjct: 212 TIPCIKEKAEWAMRWIN------------DEEALFAERLVAFAAV-EGIFFSGSFASIFW 258

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL           ++ EA  
Sbjct: 259 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNTPNNDIVLKIITEAVD 311

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G +  +  T NPF +M E I L 
Sbjct: 312 IEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT-NPFDFM-ENISLA 369

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 370 GKTNFFEKRVSDYQKAG 386


>gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
 gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
          Length = 346

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+   K    LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
            + +G  A  +S +  +    +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++         +  +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVEHLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G + P   Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL K  +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336


>gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis]
          Length = 390

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 30/341 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P+ A  +R   +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 59  NPVSA--ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 116

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 117 WES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 173

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WA+ +           G K A   
Sbjct: 174 SEMYSLLIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWI----------GDKKAT-- 221

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 222 -YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 279

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A L+E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 280 ------HLIHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 334 LELGFNKIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus]
 gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
 gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2)
           [shrimp white spot syndrome virus]
 gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus]
 gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus]
          Length = 413

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + VD  + L  R + N+ +  P+ +   WE Y       W   E+  + D   W+    L
Sbjct: 50  MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +
Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I  L  DE +   LFN  +  P+I  K  WA+ + Q+ +               L +L V
Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 212

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P 
Sbjct: 213 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 272

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE 
Sbjct: 273 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 326

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            +  T NPFP+M   I L+ + NFFE RV EYQ+ 
Sbjct: 327 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 359


>gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 349

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + VD  + L  R + N+ +  P+ +   WE Y       W   E+  + D   W+    L
Sbjct: 35  MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 91

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +
Sbjct: 92  TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 151

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I  L  DE +   LFN  +  P+I  K  WA+ + Q+ +               L +L V
Sbjct: 152 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 197

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P 
Sbjct: 198 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 257

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE 
Sbjct: 258 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 311

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            +  T NPFP+M   I L+ + NFFE RV EYQ+ 
Sbjct: 312 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 344


>gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Anolis carolinensis]
          Length = 391

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  DE+  I   L FFA+S+
Sbjct: 84  IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKYFISHILAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 141 GIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIE 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+++           G K A      +  V +   EG++F   FA I  
Sbjct: 201 TLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFAAVEGIFFSGSFASIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +++ R ++  A  
Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIITNAVR 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  ENPF +M E I L+
Sbjct: 301 IEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK-AENPFDFM-ENISLE 358

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 359 GKTNFFEKRVGEYQR 373


>gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 2 [Gallus gallus]
          Length = 384

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  +E+  I   L FFA+S+
Sbjct: 77  IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASD 133

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 134 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 193

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+++           G K A      +  V +   EG++F   FA I  
Sbjct: 194 TLPCVKKKADWAIRWI----------GDKKAT---YGERVVAFAAVEGIFFSGSFASIFW 240

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +++ + ++  A L
Sbjct: 241 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVL 293

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  ENPF +M E I L+
Sbjct: 294 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYK-VENPFDFM-ENISLE 351

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 352 GKTNFFEKRVGEYQR 366


>gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex]
          Length = 378

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 32/351 (9%)

Query: 4   NTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           N   + +   EK V V D    + +L +      L P++Y   W+ Y  A  + W   EV
Sbjct: 35  NVSPTKLTTVEKSVQVRDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEV 94

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  W   + L  +ER  +   L FFA+S+ +V  N+V    + +  PE R +   
Sbjct: 95  DLSKDLKDW---DNLQPNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGF 151

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D  E   LFN    +P I  KA WA+++           
Sbjct: 152 QIAMENIHSEMYSLLIETYIKDSAERTRLFNAVETMPCIAKKAEWAMKW----------I 201

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           G KDA      +  V +   EG++F   FA I  L +   M G+    + I RDE LH +
Sbjct: 202 GNKDAP---YSERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTD 258

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +         HL  K  +++   +++ A  +E  +  + +P   +G+N     QY+
Sbjct: 259 FACVMFK-------HLVNKPPKERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYI 311

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +F+A+R   ++G   L+  +ENPF +M E I L+ + NFFE +V EYQ+  
Sbjct: 312 EFVADRLLLELGCTKLYN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKAG 360


>gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   WE Y     + W   E+ +  DL  W++   L+D++R  I   L FFA+S+
Sbjct: 27  MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  +I +   D   + ++F    
Sbjct: 84  GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPEQKDKIFRAIE 143

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VPS+  KA WAL +                D  F + L  F  V EG+ F   F  I  
Sbjct: 144 TVPSVRKKAEWALSWIND-------------DNCFAERLIAFACV-EGILFSGSFCAIYW 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + N +K      +T+   ++   ++  A  
Sbjct: 190 LKKRGLMPGLTFSNELISRDEGLHADFACLLYNMLK------YTRLPDERVHEIVRGAVE 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T NPF WM ++I L+
Sbjct: 244 VERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-NPFDWM-KMISLQ 301

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+G 
Sbjct: 302 GKTNFFEKRVGEYQKGG 318


>gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Nomascus leucogenys]
          Length = 434

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 111 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 167

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 168 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 227

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 228 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 274

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 275 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 327

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 328 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLMLELGFGKVFR 387

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 388 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 416


>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 342

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 31/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D+  W++   L+  E+  I   L FFA+S+
Sbjct: 32  MFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFISHVLAFFAASD 88

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  E   LFN   
Sbjct: 89  GIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDSREKNRLFNAIE 148

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL +  + S                 +  V +   EG++F   F  I  
Sbjct: 149 TIPCVARKAKWALDWIHSSS--------------LYAERLVAFACVEGIFFSGSFCAIFW 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ-QKSRTMLHEAT 269
           L +   M G+    + I RDE LH +F   + +        L  K+ Q QK + ++HEA 
Sbjct: 195 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYS--------LLQKQLQWQKVQQIVHEAV 246

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+N+    QY++F+A+R    +G +  +   ENPF WM E I L
Sbjct: 247 EIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYN-VENPFDWM-EFISL 304

Query: 330 KKEKNFFETRVTEYQQGA 347
           + + NFFE RV +YQ+ +
Sbjct: 305 QGKANFFERRVGDYQKAS 322


>gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           kaustophilus HTA426]
          Length = 346

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+   K    LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDV---KQFPQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
            + +G  A  +S +  +    +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++         +  +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G + P   Y  NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL K  +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336


>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
          Length = 408

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   W  Y  A  + W   EV +  DL  W+   GL D E+  IK  L FFA+S+
Sbjct: 98  ILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHFIKHVLAFFAASD 154

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 155 GIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYINDPQEKHMLFNAVE 214

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA WA+++              D  +    +  V +   EG++F   FA I  
Sbjct: 215 TLPAVKRKAEWAMRWI-------------DHKRASFAERVVAFAAVEGIFFSGSFAAIFW 261

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+ +  + I RDE LH +F   + + +  + P       +++   ++ +A  
Sbjct: 262 LKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-------KERVIGIIMDAVE 314

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+    +Y++F+++R    +G + ++  T NPFP+M E I ++
Sbjct: 315 IEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKVYNAT-NPFPFM-ENISIE 372

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+  
Sbjct: 373 GKTNFFERRVSEYQKSG 389


>gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 406

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 153/318 (48%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  + R L FFA+S+
Sbjct: 85  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFVSRVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149
            +V  N+V      +  PE R +   Q   E +HS T+  +I +  ++E +    LF+  
Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P I  KA+WAL++              D +  F Q L  F  V EG++F   FA I 
Sbjct: 202 DNIPCIRKKADWALRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFAAIF 248

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   + +       HL  +   +    ++ +A 
Sbjct: 249 WLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPNPKVIEDIIVDAV 301

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T NPF +M E I L
Sbjct: 302 AIEQEFLTDALPCSLLGMNSKLMCQYIEFVADRLLVALGNKKYYNST-NPFDFM-ENISL 359

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV +YQ+  
Sbjct: 360 AGKTNFFEKRVGDYQKAG 377


>gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
 gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
          Length = 346

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 11/314 (3%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           L Y WA+  +     N W P EV + +D   ++    L   E+ M  + L      +S+ 
Sbjct: 35  LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
            NN    +   ++ PE    L+RQAFEEA+HS ++  ++ S+ L+  E++ M+R   ++ 
Sbjct: 92  TNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEIYEMWRADENLR 151

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            K  +     +     +      + D E    + V     EG++FY GFA    L RA K
Sbjct: 152 KKNEFIGNVYEEWGIKAL-----NGDDEAKIYMIVANQALEGIYFYNGFAAFYVLARAGK 206

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M+G A+  ++I RDE  H     ++  +IK E P L+T E  +  + ML+ A  LE  + 
Sbjct: 207 MLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIKDMLYAAYELERDWG 266

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDLKKEK- 333
                   +GL+    +++ +++AN+R H +GLE LF     +NP  W        ++K 
Sbjct: 267 FYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPISWFDSFSSFNEQKT 326

Query: 334 NFFETRVTEYQQGA 347
           NFFE  V  Y +G+
Sbjct: 327 NFFEGNVVNYSKGS 340


>gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
 gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
          Length = 313

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 32/318 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W  Y  A +  W   EV +  D   +  K  LTD+ER  I++ L FFA+++
Sbjct: 8   LFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  NI+  + R +   E + +  +Q   + +H+  +  +I +L  DE +   L N + 
Sbjct: 66  SIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLNGFE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WA++Y              D ++  L +  V + + EG++F   FA I  
Sbjct: 126 NMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN---QIKIENPHLWTKEFQQKSRTMLHE 267
           +     M G+    + I RDE LH NF     N     K++ P +           M  E
Sbjct: 173 MKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDAPTV---------NDMFSE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+   P   YTENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKY-PKMYYTENPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQ 345
            L+ + NFFE RV EY++
Sbjct: 282 SLEGKTNFFEKRVGEYKR 299


>gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus
           siliculosus]
          Length = 504

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 31/323 (9%)

Query: 28  RSDVNQ--LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           R+D ++  L P+K+   W+ Y  A  + W   EV +  D   W++   LT +E+  I   
Sbjct: 185 RADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEA---LTGNEQHFISMV 241

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144
           L FFA+S+ +V  N+V    + +  PE R +   Q   E++H   +  ++ +   D+ E 
Sbjct: 242 LAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQER 301

Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             LFN Y ++P +  KA+WA+++  +             D  F + L  F  V EG++F 
Sbjct: 302 DNLFNAYNDIPCVKQKADWAMRWIGS-------------DATFAERLVAFAAV-EGVFFS 347

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             F  I  L +   M G+    + I RDE LH +F   +   ++        K  ++   
Sbjct: 348 GSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLE-------NKPSRETVM 400

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            ++ EA  +E ++    +P   +G+NA    QY++F+A+R    +G    +  T+NPF W
Sbjct: 401 AIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQNPFDW 459

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345
           M ++I L+ + NFFE RV EYQ+
Sbjct: 460 M-DLISLQGKTNFFEKRVGEYQK 481


>gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
 gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
          Length = 408

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   WE Y  A  ++W   EV +  DL  WK+   L ++E+  IK  L FFA S+
Sbjct: 105 VFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  NI       +   E R +   Q   E VH  T+  +I      G ++ +LF   +
Sbjct: 162 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEKKQLFEAIQ 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP I  KA WA+++  T S            + F + LF F  V EG++F   F  I  
Sbjct: 222 TVPCIEKKAKWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIYW 268

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F +++   ++        +   +    ++ EA  
Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-------NRPTTETIHAIVKEAVE 321

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++++R   Q+G+ P++   +NPF +M E I L 
Sbjct: 322 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIWN-AKNPFDFM-ENISLD 379

Query: 331 KEKNFFETRVTEY 343
            + NFFE RV +Y
Sbjct: 380 GKTNFFEKRVGDY 392


>gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii RML369-C]
 gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii
           RML369-C]
          Length = 324

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 26/318 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+    +    TT            L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGVATNEDIATT------------LAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEAT 269
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +      T++H   
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
              IA A E    G  GL A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++ 
Sbjct: 235 AF-IALAFEV--GGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNG 291

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY + A
Sbjct: 292 VEHTNFFENRATEYSKAA 309


>gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 1 [Canis
           familiaris]
          Length = 394

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+
Sbjct: 87  IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++           G K+A      +  V +   EG++F   FA I  
Sbjct: 204 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  A  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIIINAVR 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+
Sbjct: 304 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLE 361

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 362 GKTNFFEKRVGEYQR 376


>gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
 gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
          Length = 346

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+   K    LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
            + +G  A  +S +  +    +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++         +  +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G + P   Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL K  +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336


>gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta]
 gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta]
          Length = 393

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   + L DDER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPNQREYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +   ++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKHERIIEIIRDAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVAEYQR 375


>gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
 gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
          Length = 400

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 31/332 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D + +L+   D   + P+KY   WE Y  A  + W   EV + DD+  W+    L+D ER
Sbjct: 78  DPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LSDGER 134

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL- 138
             I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 135 HFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLLETYI 194

Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
              +++ +LF+    VP I  KA WA+++  + SS             F + L  F  V 
Sbjct: 195 KDPIEKHKLFHSIETVPCIKKKAQWAIKWIGSESS-------------FPERLVAFAAV- 240

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +   +        +K+
Sbjct: 241 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML--------SKQ 292

Query: 257 FQQ-KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            ++ + + ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G    +  
Sbjct: 293 LEESRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLVALGCSKAYNV 352

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           T NPF +M ++I L+ + NFFE RV +YQ+  
Sbjct: 353 T-NPFDFM-DMISLQGKTNFFEKRVGDYQKSG 382


>gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas
           neptunium ATCC 15444]
 gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 345

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 26/333 (7%)

Query: 24  MLNARSDVNQLL-------PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           M N  +D   LL       P +Y WA+E +      HWMP EVP+ +D   W  K  L+D
Sbjct: 1   MANVSTDRPGLLTPSNAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWAVK--LSD 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYII 135
            ER ++ +   FF  S+  V  N  +  Y  L  P E    L   +  E +H   +  ++
Sbjct: 59  AERNLLTQIFRFFTQSDVEVGAN-YMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLL 117

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++G+ + E F+ + E   + AK ++  Q+           GT + +++    + VF   
Sbjct: 118 ETIGMPDSE-FSAFMEYKEMAAKHDYLGQF-----------GT-ETNEDIAVSMAVFGAF 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+  +  FA +++  R NKM G+ +   + +RDESLH    I + +    E   + T 
Sbjct: 165 TEGLQLFASFAMLMNFPRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAET-GVMTD 223

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           E +++ R        LE  +       G V G+ A   + Y+++IA+ R +Q+ LEP++ 
Sbjct: 224 ELRERIRDCCRTVVALEDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYG 283

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            T++P PW++E+++  +  NFFE R TEY +GA
Sbjct: 284 VTKHPIPWLTEILNGVEHANFFEQRSTEYSKGA 316


>gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
 gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
          Length = 405

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 85  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D +  F Q L  F  V EG++F   FA I  
Sbjct: 203 TIPCIAKKAQWAMRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPDKKVVEDIIVEAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L 
Sbjct: 303 IEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SSNPFDFM-ESISLA 360

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 361 GKTNFFEKRVGDYQKAG 377


>gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
 gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
          Length = 324

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 26/318 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ +
Sbjct: 12  PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y  +  P     ++  AF   E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+    +    TT            L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQFGVATNEDIATT------------LAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEAT 269
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +      T++H   
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
              IA A E    G  GL A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++ 
Sbjct: 235 AF-IALAFEV--GGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNG 291

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY + A
Sbjct: 292 VEHTNFFENRATEYSKAA 309


>gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
 gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii]
          Length = 426

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  D   W  K  L ++ER  I R L FFA+S+
Sbjct: 114 LFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNEK--LNNNERYFISRILAFFAASD 171

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 172 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 231

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D D  F + L  F  V EG++F   FA I  
Sbjct: 232 NIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV-EGIFFSGSFASIFW 278

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 279 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPDAVIVERIITEAVT 331

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R    +G + ++  T NPF +M E I L 
Sbjct: 332 IEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT-NPFDFM-ENISLA 389

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 390 GKTNFFEKRVSDYQKAG 406


>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
 gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
          Length = 324

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 30/333 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+    VP +  KA WAL++                +  F + L  F  V 
Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWID--------------NGNFAERLVAFAAV- 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   + + +K        K 
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLK-------NKL 217

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++    ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T
Sbjct: 218 SEEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIYHAT 277

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E+I L+ + NFFE RV +YQ+   L
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVL 308


>gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
 gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
          Length = 344

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+N R S+V     + Y WA+ KY     N W P E+ M  D+  +        D  L I
Sbjct: 20  MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQLTAREQDAFLKI 79

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
              L    S ++  A  +      ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 80  IGLLALLDSIQTDYAGRVA----DYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++         +  +    +  + E L    VF V+ EG++
Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEKPNVENLLRSIVFDVILEGLF 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319
           +R+   +A  LEI +A E +     G++    E Y++F AN R HQ+G + P   Y  NP
Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307

Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL K  +FFE +  +Y +
Sbjct: 308 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 334


>gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
 gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
          Length = 328

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 32/334 (9%)

Query: 24  MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +L    D   + P+++   W W K   AC   W   E+ +  DL  W +K  L DDE+  
Sbjct: 8   ILQENKDRFVIFPIQHHDLWEWYKKQEAC--IWTAEEIDLHQDLTDWNTK--LNDDEKYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF      P+I  KA+WAL++   + SPSF             +  + +   EG
Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKW---IESPSFA------------ERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++       + +   H+  K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHKNHIVNKVTK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  + N
Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M ++I L+ + NFFE RV+EYQ+   L  D
Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa]
 gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa]
          Length = 342

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 31/338 (9%)

Query: 15  KRVNVDDKR--MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +R+  +DK+  +L  ++    + P++Y   WE Y  A  + W   EV +  D+  W++  
Sbjct: 11  ERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWEA-- 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+D E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  + 
Sbjct: 69  -LSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSEMYS 127

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            ++ +   D  E   LFN    +P +  KA WAL + Q  SS  F             + 
Sbjct: 128 LLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQ--SSMVFA------------ER 173

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++   
Sbjct: 174 LVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQ-RQ 232

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            H W     QK   ++ EA  +E  +  E +P   +G+NA     Y++F+A+R    +G 
Sbjct: 233 LH-W-----QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGY 286

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +  +   ENPF WM E I L+ + NFFE RV +YQ+ +
Sbjct: 287 QKKYN-VENPFDWM-EFISLQGKANFFERRVGDYQKAS 322


>gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 343

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 165/312 (52%), Gaps = 19/312 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++ WA+  Y +   N W+P EVPM  D+  W ++  L D ER   K+ +G  A  +S V 
Sbjct: 33  RFPWAYPMYRNMLRNFWIPDEVPMTADIKQWSTE--LGDHERDTFKKVIGLLAFLDS-VQ 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSI 155
            +    +  +L++      +   +F+E VH+ ++ Y+++SL    ++ E+F  ++    +
Sbjct: 90  TDYSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQDEIFEYWKTDEVL 149

Query: 156 TAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
             + ++ A  Y + +  P+         Q F++ + V+ V+ EG++FY+GFA   ++ R 
Sbjct: 150 RERNDFLAAGYQRFVDDPT--------PQTFMESV-VYDVILEGLFFYSGFAFFYNMARN 200

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM+G     ++I RDE +H+     +  ++  ENP L  +E  +  R    +A  LEIA
Sbjct: 201 GKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEFVRQTFRKAAELEIA 260

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLKK 331
           ++   +   F G+ +   ++Y++F+AN+R +++G+E P   +  N   W+   E  D  K
Sbjct: 261 WSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNNLRWIKAYEENDAGK 320

Query: 332 EKNFFETRVTEY 343
             +FFE+RVT+Y
Sbjct: 321 -TDFFESRVTQY 331


>gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
 gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
          Length = 394

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  +  + W   E+ +  DLA W   N + ++ER  I R L FFA+S+
Sbjct: 83  IYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMNENERFFISRVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE +     Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 141 GIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAIE 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  + + L  F  V EG++F   FA I  
Sbjct: 201 NIPFIREKADWAIRWIQ------------DEDALYAERLVAFAAV-EGIFFSGSFAAIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    + I RDE +H ++   + + +K + +P +  K        ++ EA 
Sbjct: 248 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSPEIIEK--------IITEAV 299

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  Y  + +P   +G+N     QY++F+A+R     G +  +  T NPF +M E I L
Sbjct: 300 TIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKYYNVT-NPFDFM-ENISL 357

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV++YQ+  
Sbjct: 358 AGKTNFFEKRVSDYQKAG 375


>gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
          Length = 413

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + VD  + L  R + N+ +  P+ +   WE Y       W   E+  + D   W+    L
Sbjct: 50  MQVDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +
Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I  L  DE +   LFN  +  P+I  K  WA+ + Q+ +               L +L V
Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 212

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P 
Sbjct: 213 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 272

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE 
Sbjct: 273 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 326

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            +  T NPFP+M   I L+ + NFFE RV EYQ+ 
Sbjct: 327 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 359


>gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
 gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
          Length = 403

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 152/310 (49%), Gaps = 27/310 (8%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+ Y  A  + W   E+ +  DL  W +K  LTDDE+  I   L FFA+S+ +V  N+
Sbjct: 84  FVWQMYKKAEASFWTAEEIDLSKDLHDWNNK--LTDDEKYFISHILAFFAASDGIVNENL 141

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157
           V      +  PE R +   Q   E +HS T+  +I +   +  +   LFN    +P I  
Sbjct: 142 VERFSAEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRK 201

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA+WAL++              D    F   L  F VV EG++F   FA I  L +   M
Sbjct: 202 KADWALRWIT------------DKKSTFATRLIAFAVV-EGIFFSGAFASIFWLKKRGLM 248

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + +    P+      ++  + ++ +A  +E  +  
Sbjct: 249 PGLTFSNELISRDEGLHTDFACLLFSLLN-NRPN------KEVVKEIVVDAVKIEQEFLT 301

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           E +P   +G+NA   +QY++F+A+R    +G E +++ T NPF +M E I L  + NFFE
Sbjct: 302 EALPCALLGMNANLMKQYIEFVADRLLVALGNEKVYRAT-NPFDFM-ENISLGGKTNFFE 359

Query: 338 TRVTEYQQGA 347
            RV EYQ+  
Sbjct: 360 KRVGEYQKAG 369


>gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia]
 gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans]
 gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia]
 gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans]
          Length = 393

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   + L DDER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVAEYQR 375


>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 324

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K+   W  Y     + W   E+ +  DL  W +   L D ER  I   L FFA+S+
Sbjct: 18  LFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LNDGERHFISHVLAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +     +  PE + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 75  GIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEKDRLFNAID 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  KA+WAL++    S              F++++  F  V EG++F   F  +  
Sbjct: 135 TVPCVKKKADWALRFIDNGS--------------FIENIIAFAAV-EGIFFSGSFCSVFW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   +  +      ++  K   ++   ++ EA  
Sbjct: 180 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------YINNKLPAERVIQIILEAVE 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  +++P   +G+NA   +QY++F+A+R    +G+   F  T NPF +M E+I L+
Sbjct: 234 IEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQFNAT-NPFDFM-EMISLQ 291

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+  
Sbjct: 292 GKTNFFEKRVSEYQKSG 308


>gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 323

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+ +   W+ Y  A  + W   E+ +  DL  W  K  L +DE+  IK
Sbjct: 7   ILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWDRK--LNNDEKYFIK 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +      
Sbjct: 65  HILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKDPT 124

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D+  LF     +P I+ KA+WAL++   +S  SF+            +  V +   EG++
Sbjct: 125 DKNRLFKALETIPCISNKADWALRW---ISQGSFS------------ERLVAFAAVEGIF 169

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G++   + I RDE LH +F   + +Q+  + P        + 
Sbjct: 170 FSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLP-------LET 222

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++  A  +E  +  + +P   +G+NA    QY++F+A+R    +G   L+   +NPF
Sbjct: 223 LQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYN-VDNPF 281

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I +  + NFFE RV+EYQ+  
Sbjct: 282 DFM-DLISMPGKTNFFERRVSEYQKSG 307


>gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis
           elegans]
 gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 381

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 157/328 (47%), Gaps = 28/328 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ ML    +   + PLK+   W  Y  A  + W   EV +  D+  W+  NG   DE+ 
Sbjct: 61  DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   
Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LFN   E   I  KA+WAL++              D    F + L  F  V E
Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRWIS------------DKKASFAERLIAFAAV-E 224

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + ++++        K  
Sbjct: 225 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQ-------KKLT 277

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           QQ+   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G + L+K ++
Sbjct: 278 QQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYK-SK 336

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           NPF +M E I +  + NFFE RV+EYQ+
Sbjct: 337 NPFDFM-ENISIDGKTNFFEKRVSEYQR 363


>gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
 gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
          Length = 377

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +  +D+ +L        L P++Y   W  Y  A  + W   E+ +  D+  W  +  L D
Sbjct: 57  IRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDMRDWTER--LDD 114

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  IK  L FFA+S+ +V  N+V      +   E R +   Q   E +HS T+  +I 
Sbjct: 115 NERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIHSETYSLLID 174

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LF     +P I  KA+WAL++              D    F + L  F 
Sbjct: 175 TYIKDPQERDHLFAAIETIPCIKRKADWALRW------------ISDKSSTFAERLVAFA 222

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   FA I  L +   M G+    + I RDE +H  F   + + ++   PH  
Sbjct: 223 AV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLFSHLR-HRPH-- 278

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R  + +G   ++
Sbjct: 279 ----PSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADRLLYSLGQNKIY 334

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
             T NPF +M ++I L+ + NFFE RV+EY + 
Sbjct: 335 NAT-NPFDFM-DMISLQGKTNFFEKRVSEYAKA 365


>gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit;
           AltName: Full=p41
 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula
           solidissima]
          Length = 384

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP++Y   W+ Y  A  + W   EV +  D+A W+S   L  +E+  I   L FFA+S+
Sbjct: 74  VLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASD 130

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 131 GIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIE 190

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+++    SS                +  V +   EG++F   FA I  
Sbjct: 191 TMPCVKEKADWAMRWINDDSSS-------------YAERVVAFAAVEGIFFSGSFASIFW 237

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  K  Q++   ++ EA  
Sbjct: 238 LKKRGIMPGLTFSNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVK 290

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++F+A+R   ++  + L+   ENPF +M E I L+
Sbjct: 291 IEQVFLTEALPCRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLE 348

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 349 GKTNFFEKRVGEYQK 363


>gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia
           guttata]
          Length = 390

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 34/354 (9%)

Query: 1   MANNTGLSPIQAGE------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           +A+ T     Q G+      +R   +++ +L        + P++Y   W+ Y  A  + W
Sbjct: 44  LASKTARRIFQEGDGNSVSVERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFW 103

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
              EV +  DL  W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R
Sbjct: 104 TAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 160

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA+ +      
Sbjct: 161 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWI----- 215

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                G K A      +  V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 216 -----GDKKAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 267

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +         HL  K  +++ + ++  A L+E  +  E +P   +G+N   
Sbjct: 268 GLHCDFACLMFK-------HLIHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTL 320

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            +QY++F+A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 321 MKQYIEFVADRLMLELGFNKIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372


>gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 329

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ +
Sbjct: 17  PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQAD-I 73

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 74  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 132 VMKKKYDYMQRFEEC---------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++    L+EA  + +
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKE----LYEACSVIV 238

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
               E +   F      GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++
Sbjct: 239 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 298

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE RVTEY + A
Sbjct: 299 GVEHTNFFENRVTEYTRAA 317


>gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa
           Japonica Group]
          Length = 339

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   S+   + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  I 
Sbjct: 17  LLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +    G 
Sbjct: 75  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDEAR 233

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    NPF
Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYN-VANPF 292

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318


>gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia
           ruminantium]
 gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 324

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 161/319 (50%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 69  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K +    Y Q      F    K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYD----YMQ-----RFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++    L+EA  + +
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKE----LYEACSVIV 233

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
               E +   F      GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++
Sbjct: 234 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 293

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE RVTEY + A
Sbjct: 294 GVEHTNFFENRVTEYTRAA 312


>gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis]
 gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 28/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +    
Sbjct: 56  AKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D ER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  + 
Sbjct: 114 -LNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I SL  D+ E   LFN    +P +  KA+WAL +     +             F + +
Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 220

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F         +  
Sbjct: 221 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 272

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +  
Sbjct: 273 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 332

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           + ++   ENPF +M E I L+ + NFFE RV EYQ+  
Sbjct: 333 QKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSG 368


>gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus]
 gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus]
          Length = 322

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W+ Y  A  + W P EV +  DL  W   + LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDW---HILTSDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E   LF     +  I  KA W  ++             ++ D  + + L  F  V
Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +         HL   
Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFK-------HLNHT 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + ++  ++ EA ++E  +  + +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           T NPF +M E I L+ + NFFE RV++YQ+
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305


>gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
 gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
          Length = 351

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 168/341 (49%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + V  ++M+   + ++N    +KY WA E Y  A NN W+P E+ M  D+  ++    L+
Sbjct: 20  IEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNADVQDYRK---LS 76

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +S+   N+   + ++++  E    L  QAF+EAVHS ++ Y++
Sbjct: 77  PAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 135

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   +     +Y+       K +  L          +     D     L  + V   +
Sbjct: 136 DTICSPDERTAILYQ------WKDDEHLLKRNKFIGDLYNEFQDDKSALALLKVAVANYI 189

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I++++ E P L+T 
Sbjct: 190 LEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIHELQKEEPQLFTP 249

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
           E  +  R+M+ E    EIA+ H  +     GL       Y+Q++ N RC  +G EPL++ 
Sbjct: 250 ENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLGNLRCENLGFEPLYEG 309

Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           + E P    W+S+  +    K +FFE + T Y + + LK D
Sbjct: 310 HREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350


>gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
 gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 28/334 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 60  KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 176

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA+WAL++   +S    T G +           V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRW---ISDKQATYGER----------VV 223

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 276

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 277 LVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +FK T NPF +M E I L+ + NFFE +V EYQ+
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368


>gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus
           prevotii DSM 20548]
 gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM
           20548]
          Length = 352

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 173/344 (50%), Gaps = 21/344 (6%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +++  +R++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  ++    L 
Sbjct: 21  IDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LD 77

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS ++ YI+
Sbjct: 78  KHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYIL 136

Query: 136 TSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++   E    +  +++E   +  +  +   QY + L +        D +  F++ L   
Sbjct: 137 DTICSPEERTRILYLWKEDEHLLKRNEFIGDQYNEFLEN--------DDEFRFMKVLIAN 188

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E   L
Sbjct: 189 YIL-EGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKEREDL 247

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +  E Q   R ML E    EIA+   ++     GLN    E Y++++ N R   +GLEPL
Sbjct: 248 FVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLGNLRAKGLGLEPL 307

Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           ++ Y E P    W+ E  D    K +FFE +VT Y + + ++ D
Sbjct: 308 YEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera]
          Length = 329

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 29/333 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W++   LT D
Sbjct: 3   SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S
Sbjct: 60  EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLES 119

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LF+    +P +  KA WAL++              D  + F + L  F  
Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRWI-------------DGSETFAERLLAFAC 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++        
Sbjct: 167 V-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------N 218

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ + ++ ++  +E  +  + +P   VG+N+    QY++F+A+R    +G   ++ 
Sbjct: 219 KLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYN 278

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            + NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 279 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309


>gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
 gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
          Length = 342

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 20/334 (5%)

Query: 19  VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG---L 74
           V D+++     + +  L  +KY WA + + +   N W P EV M  D      KN    L
Sbjct: 18  VSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMHGD------KNHYLHL 71

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E++   R L      +SL  NN++  I   +++PE    L+RQA+EEA+HSH++  +
Sbjct: 72  SPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVM 131

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+  +   ++ M+R   ++  K +   Q    LS+          +   L+ LF   +
Sbjct: 132 VESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN-------NPTEYNLLKALFANQI 184

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GF+   +L R+ +M+G A+  ++I RDE  HL+   ++IN ++ E   L++
Sbjct: 185 L-EGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNMINTLRKERSDLFS 243

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E   +   M  +A  LE A+         + L+      Y +++A+ R   +GL  L+ 
Sbjct: 244 PELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLADTRLAVVGLPKLYN 303

Query: 315 YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            ++NP  W+ +  +    + NFFE +V+ Y +G+
Sbjct: 304 -SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336


>gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata]
          Length = 387

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   EV +  D   W+ K  L   E+  I   L FFA+S+
Sbjct: 72  LFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEEK--LKPQEKYFISHVLAFFAASD 129

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  N+V    + +  PE R +   Q   E +HS  +  +I +L    +++  LFN   
Sbjct: 130 GIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIKDPIEKSNLFNAIE 189

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++              + D     +  V +   EG++F   FA I  
Sbjct: 190 TMPCVQKKAVWALKWI-------------NKDCASFSERVVAFAAVEGIFFSGSFAAIFW 236

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L + N + G+    + I RDE LH +F         +   H+  K  +++ + ++ +A  
Sbjct: 237 LKKRNLLPGVTFSNELISRDEGLHCDFAC-------LMYKHIVNKPSEERVKQIIRDAVA 289

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +EI +  E++P   +G+N    + Y++F A+R  + +G    +   ENPF +M E I L 
Sbjct: 290 IEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWN-VENPFDFM-ENISLA 347

Query: 331 KEKNFFETRVTEYQQGA 347
           ++ NFFE+RV++YQ+  
Sbjct: 348 RKANFFESRVSDYQKAG 364


>gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis]
 gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis]
          Length = 394

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W     LTD+ER  I   L FFA+S+
Sbjct: 87  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS +   G +           + +   EG++F   FA I  
Sbjct: 204 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPCRERIIEIISDAVT 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     +Y++F+A+R   ++G+  L+  T+NPF +M E+I L 
Sbjct: 304 IEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVELGVGKLYN-TKNPFTFM-EMISLD 361

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 362 GKTNFFEKKVGEYQR 376


>gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster]
 gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct]
 gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct]
          Length = 393

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   + L DDER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVGEYQR 375


>gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
          Length = 297

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 28/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WA
Sbjct: 59  QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++     S   T G +           V +   EG++F   FA I  L +   M G+  
Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +         +L  K  + + R ++ +A  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPSEDRVREIIADAVQIEQEFLTEALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+E
Sbjct: 219 GLIGMNCVLMKQYIEFVADRLLGELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276

Query: 343 YQQGA 347
           YQ+ A
Sbjct: 277 YQRFA 281


>gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   WE Y     + W   E+ +  DL  W++   L+D++R  I   L FFA+S+
Sbjct: 27  MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  +I +   D  E   +F    
Sbjct: 84  GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPAEKDKIFRAIE 143

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VPS+  KA WAL +                D  F + L  F  V EG+ F   F  I  
Sbjct: 144 TVPSVRKKAEWALSWIND-------------DNCFSERLIAFACV-EGILFSGSFCAIYW 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + N +       +T+   ++   ++  A  
Sbjct: 190 LKKRGLMPGLTFSNELISRDEGLHADFACLLYNMMH------YTRLPDERVHEIVRGAVD 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T NPF WM ++I L+
Sbjct: 244 VERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-NPFDWM-KMISLQ 301

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+G 
Sbjct: 302 GKTNFFEKRVGEYQKGG 318


>gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus
           Af293]
 gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus Af293]
 gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus A1163]
          Length = 405

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 85  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D +  F Q L  F  V EG++F   FA I  
Sbjct: 203 TIPCIRKKAQWAMRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPDKKVIEDIIVEAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  F  + NPF +M E I L 
Sbjct: 303 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SPNPFDFM-ESISLA 360

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 361 GKTNFFEKRVGDYQKAG 377


>gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group]
          Length = 345

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  + 
Sbjct: 23  LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVS 80

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +    G 
Sbjct: 81  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 141 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 187 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 239

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    NPF
Sbjct: 240 VQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYN-VANPF 298

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 299 DWM-ELISLQGKTNFFEKRVGDYQKAS 324


>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa]
 gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 29/332 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W++   LT DE
Sbjct: 4   IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDE 60

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ + 
Sbjct: 61  KHFISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LF+    VP +  KA WAL++              D  + F + L  F  V
Sbjct: 121 IKDSEEKNRLFHAIETVPCVAKKARWALRWI-------------DGSESFAERLVAFACV 167

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K
Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------KK 219

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  
Sbjct: 220 LSEEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNV 279

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 280 A-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309


>gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba]
 gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba]
          Length = 393

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   + L DDER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVGEYQR 375


>gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 163/348 (46%), Gaps = 31/348 (8%)

Query: 5   TGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           T LS +Q  +  V  N  D+ +L    +   L P+KY   W  Y     + W   E+ + 
Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LT DE+  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 230 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E   L +    VP I  KA WA+++              
Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWI------------- 333

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + +  F + L  F  V EG++F   F  I  + + + M G+    + I RDE LH +F  
Sbjct: 334 NNNDSFAERLIAFAAV-EGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
                  +   H+  K   Q+   ++  A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 393 -------LLYKHMINKLSIQRVHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           A+R    +G   ++  ++NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWM-DMISLQGKTNFFERRVGDYQKAG 491


>gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Gardel]
 gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 329

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ +
Sbjct: 17  PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 74  EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 132 VMKKKYDYMQRFEEC---------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++    L+EA  + +
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKE----LYEACSVIV 238

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
               E +   F      GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++
Sbjct: 239 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 298

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE RVTEY + A
Sbjct: 299 GVEHTNFFENRVTEYTRAA 317


>gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax
           SaI-1]
 gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative
           [Plasmodium vivax]
          Length = 349

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 29/330 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL   K    L D+E+ 
Sbjct: 30  NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 146

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF+    +P++  KA WA ++    +S                +  V     E
Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F + +
Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF-HAK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase
           [Ornithorhynchus anatinus]
          Length = 394

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 159/330 (48%), Gaps = 28/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 72  VEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 128

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 129 KYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 188

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E   LFN    +P +  KA+WAL++           G K+A      +  V +  
Sbjct: 189 IKEPKEREFLFNAIETLPCVKKKADWALRWI----------GDKEAT---YGERVVAFAA 235

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K
Sbjct: 236 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHK 288

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +FK 
Sbjct: 289 PSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLLLELGFSKIFK- 347

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 348 VENPFDFM-ENISLEGKTNFFEKRVGEYQR 376


>gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
 gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
          Length = 331

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W+  N + D+ER  I   L FFA+S+
Sbjct: 19  LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNERHFISHVLAFFAASD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   +  E   LFN   
Sbjct: 77  GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIREAAEREHLFNAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++              D    F   L  F  V EG++F   FA I  
Sbjct: 137 TIPCVARKAQWALRWIN------------DDRSSFGIRLVAFAAV-EGIFFSGSFASIFW 183

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   +   ++   PH          R ++ EA  
Sbjct: 184 LKKRGLMPGLTFSNELITRDEGMHTDFACLLFAHLR-RRPH------PDVVRRIIMEAVT 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G E ++  T NPF +M ++I L+
Sbjct: 237 IEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNVT-NPFDFM-DMISLQ 294

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y+  A
Sbjct: 295 GKTNFFEKRVSDYKMAA 311


>gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Meleagris gallopavo]
          Length = 339

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 151/314 (48%), Gaps = 28/314 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   W  Y  A  + W   EV +  DL  W+S   L  +E+  I   L FFA+S+ 
Sbjct: 33  FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN    
Sbjct: 90  IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA+WA+++           G K A      +  V +   EG++F   FA I  L
Sbjct: 150 LPCVKKKADWAIRWI----------GDKKAT---YGERVVAFAAVEGIFFSGSFASIFWL 196

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   M G+    + I RDE LH +F   +         HL  K  +++ + ++  A L+
Sbjct: 197 KKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVLI 249

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  ENPF +M E I L+ 
Sbjct: 250 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYK-VENPFDFM-ENISLEG 307

Query: 332 EKNFFETRVTEYQQ 345
           + NFFE RV EYQ+
Sbjct: 308 KTNFFEKRVGEYQR 321


>gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina
           98AG31]
          Length = 385

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W  Y  A  + W   E+ +  D+  W+  N L DDE+  IK  L FFA+S+
Sbjct: 65  LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKHFIKHVLAFFAASD 122

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  N++      +   E R +   Q   E +HS  +  +I +     ++   LF+   
Sbjct: 123 GIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVREPIERSHLFDAID 182

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D    F + L  F  V EG++F   FA I  
Sbjct: 183 TIPCIRKKADWALKWIS------------DKQSTFGERLIAFAAV-EGIFFSGSFASIFW 229

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++   PH  T       + ++ +A  
Sbjct: 230 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLE-RRPHPDT------VQAIISQAVE 282

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +   ENPF +M E+I L 
Sbjct: 283 IEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNDKFYN-AENPFDFM-EMISLS 340

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y +  
Sbjct: 341 GKTNFFEKRVSDYAKAG 357


>gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
          Length = 405

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 85  LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRAYLFDAID 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D +  F Q L  F  V EG++F   FA I  
Sbjct: 203 TIPCINKKAQWAMRWIS------------DKESSFGQRLVAFAAV-EGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPDKKVVEDIIVEAVA 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L 
Sbjct: 303 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SPNPFDFM-ESISLA 360

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 361 GKTNFFEKRVGDYQKAG 377


>gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 326

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    E Y       W P E+ +Q D+  +KS   LT  E+ +    +G+FASSE LV 
Sbjct: 20  KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ S  +D  +++N+  E   +  
Sbjct: 77  NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLEDKLLKE 136

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EG++FY+ FA   ++    KM
Sbjct: 137 KQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  +  ENP +     F +  R  + +A  LE+ Y 
Sbjct: 197 KNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVDDYNFVENIRQSIIDAVELELNYL 256

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P F   +NP  ++ +  D+KK  NF
Sbjct: 257 KTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315

Query: 336 FETRVTEY 343
           FE   TEY
Sbjct: 316 FEVSSTEY 323


>gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276]
 gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii
           WM276]
          Length = 401

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W++K  L D+ER  I+  L FFA+S+
Sbjct: 86  LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +H+ T+  +I +   D      LF+   
Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAMD 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D    F + L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWALRWIS------------DKRSCFGERLIAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   ++   PH  T         ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLR-RRPHPDT------IARIIKEAVS 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E ++  T NPF +M E+I L+
Sbjct: 304 IEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVALGNEKIWNST-NPFDFM-EMISLQ 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE+RV+ Y +  
Sbjct: 362 GKANFFESRVSAYSKSG 378


>gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  WK    L  +E+  IK  L FFA+S+
Sbjct: 106 IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 162

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS  +  +I +L  D  E   LFN   
Sbjct: 163 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 222

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P+I  KA+WAL++               AD  +   +  F  V EG++F   FA I  
Sbjct: 223 TMPAIKKKADWALKWI-------------GADAPYSVRVIAFAAV-EGIFFSGSFAAIFW 268

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         +   H+  K  Q++   ++ +A  
Sbjct: 269 LKKRGLMPGVTFSNELISRDEGLHTDFAC-------LMYKHMVQKPSQEQIIAIIRDAVS 321

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N    + Y++F+A+R   ++    ++K  ENPF +M E+I L+
Sbjct: 322 IEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPKIYK-VENPFDFM-EMISLE 379

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V+EY +  
Sbjct: 380 GKTNFFEKKVSEYARAG 396


>gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis]
 gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 28/334 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 60  KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLL 176

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA+WAL++           G K A      +  V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI----------GDKQAT---YGERVV 223

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 276

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 277 LVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +FK T NPF +M E I L+ + NFFE +V EYQ+
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368


>gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           chaffeensis str. Arkansas]
 gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 324

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 69  EVNNCYMKHYSNIFKP-TEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K +    Y Q      F    K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYD----YMQ-----RFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W    +Q+    L+EA  + +
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQE----LYEACRIIV 233

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           +   E +   F      GL++   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++
Sbjct: 234 SLEDEFINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILN 293

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE RVTEY + A
Sbjct: 294 GVEHTNFFENRVTEYARAA 312


>gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 401

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W++K  L D+ER  I+  L FFA+S+
Sbjct: 86  LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +H+ T+  +I +   D      LF+   
Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAID 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL++              D    F + L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWALRWIS------------DKRSCFGERLIAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   ++   PH  T         ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLR-RRPHPDT------IARIIKEAVT 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E ++  T NPF +M E+I L+
Sbjct: 304 IEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAMGNEKIWNST-NPFDFM-EMISLQ 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE+RV+ Y +  
Sbjct: 362 GKANFFESRVSAYSKSG 378


>gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa
           Japonica Group]
 gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group]
          Length = 345

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L   SD   + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  + 
Sbjct: 23  LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVS 80

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ 
Sbjct: 81  HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 140

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     VP++  KA+WA+++              D  + F + L  F  V EG++
Sbjct: 141 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  + +
Sbjct: 187 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 239

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    NPF
Sbjct: 240 VQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYN-VANPF 298

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 299 DWM-ELISLQGKTNFFEKRVGDYQKAS 324


>gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni]
 gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni]
          Length = 395

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W     LTD+ER  I   L FFA+S+
Sbjct: 88  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 144

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 145 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSILIDTYIRDPQERDYLFNAVE 204

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS +   G +           + +   EG++F   FA I  
Sbjct: 205 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 251

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 252 LKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQ-------HLVQRPSRERIIEIIRDAVQ 304

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 305 IEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFSFM-EMISLD 362

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 363 GKTNFFEKKVGEYQR 377


>gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Ciona
           intestinalis]
          Length = 393

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W++   L  +ER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWEA---LKPNERKFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 143 GIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYIRDTHEREFLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++              D++  + + +  F  V EG++F   FA I  
Sbjct: 203 TLPCVRKKAEWALKWIS------------DSESTYAERIIAFASV-EGIFFSGSFAAIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  + +   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSEARVVEIVKDAVT 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N    +QY++F+A+R   ++G   +FK  ENPF +M E+I L+
Sbjct: 303 IEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFK-VENPFDFM-ELISLE 360

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 361 GKTNFFEKRVGEYQKAG 377


>gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
 gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti]
 gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti]
 gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
          Length = 397

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DLA W+    L   E+  I   L FFA+S+
Sbjct: 90  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 146

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 147 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 206

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +   +SS     G +           V +   EG++F   FA I  
Sbjct: 207 NLPCVKKKADWALNW---ISSKKANFGER----------VVAFAAVEGIFFSGSFASIFW 253

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  Q++   ++ EA L
Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEIIREAVL 306

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G++ ++  T+NPF +M E I L+
Sbjct: 307 IEQEFLTKALPVDLLGMNCDLMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM-EFISLE 364

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 365 GKTNFFEKKVGEYQK 379


>gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica]
          Length = 382

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  WK    L  +E+  IK  L FFA+S+
Sbjct: 70  IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 126

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS  +  +I +L  D  E   LFN   
Sbjct: 127 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 186

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P+I  KA+WAL++               AD  +   +  F  V EG++F   FA I  
Sbjct: 187 TMPAIKKKADWALKWI-------------GADAPYSVRVIAFAAV-EGIFFSGSFAAIFW 232

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         +   H+  K  Q++   ++ +A  
Sbjct: 233 LKKRGLMPGVTFSNELISRDEGLHTDFAC-------LMYKHMVQKPSQEQIIAIIRDAVS 285

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N    + Y++F+A+R   ++    ++K  ENPF +M E+I L+
Sbjct: 286 IEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPKIYK-VENPFDFM-EMISLE 343

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V+EY +  
Sbjct: 344 GKTNFFEKKVSEYARAG 360


>gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
 gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
          Length = 387

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  A  + W   EV +  D   W S   L D+ER  I   L FFA+S+
Sbjct: 80  IFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHWDS---LKDEERYFISHVLAFFAASD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 137 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDYLFNAIE 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +           G K+A      +  V +   EG++F   FA I  
Sbjct: 197 TLPCVKRKADWALNW----------IGNKNAG---FGERVVAFAAVEGIFFSGSFAAIFW 243

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  ++    ++  A  
Sbjct: 244 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSKETVTKLIRNAVE 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G + +++  ENPF +M E I L+
Sbjct: 297 IEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIYR-VENPFDFM-ENISLE 354

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 355 GKTNFFEKRVGEYQR 369


>gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 352

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 168/331 (50%), Gaps = 20/331 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    LKY W  + Y  A NN W+P E+ +  D+   K    L + E+    R L F
Sbjct: 34  TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRNLDEHEKRAFDRILSF 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   N+   +  +++  E    L  Q ++E++HS ++ YI+ ++   E    + 
Sbjct: 91  LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            +++E   +  +  +   QY + L +        D +  F++ L   Y++ EG++FY+GF
Sbjct: 150 YLWKEDEHLLKRNEFIGEQYNEFLKN--------DDEFRFMKALVANYIL-EGIYFYSGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           +   +LGR  KM G  ++ +YI RDE+ HL     +IN ++ E   L+TKE ++  R ML
Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKEREDLFTKEHKEYYRNML 260

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322
            E    EIA+    +     GL+    E Y++++ N R   +GLE L++ YTE P    W
Sbjct: 261 KEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLGLEALYEGYTEIPDSMKW 320

Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           + E  D    K +FFE +VT Y + + ++ D
Sbjct: 321 VDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351


>gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 414

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 151/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N L D+ER  I   L FFA+S+
Sbjct: 95  LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NKLNDNERHFISHVLAFFAASD 152

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +   E R +   Q   E +HS T+  +I +   D  +   LF+   
Sbjct: 153 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRDYLFDAVD 212

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL            T   D    F + L  F  V EG++F   FA I  
Sbjct: 213 TIPCIKKKADWAL------------TWISDQKSTFAERLVAFAAV-EGIFFSGSFASIFW 259

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   + + +K   PH          + ++ EA  
Sbjct: 260 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLK-RRPH------PDVVKRIITEAVA 312

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E ++  T NPF +M ++I L+
Sbjct: 313 IEQEFLTDALPVKLIGMNAELMCQYIEFVADRLLVSLGNEKVYNST-NPFDFM-DMISLQ 370

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y +  
Sbjct: 371 GKTNFFEKRVSDYAKAG 387


>gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
 gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
          Length = 409

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 28/318 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W  +  L DDER  I   L FFA+S+
Sbjct: 83  LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140

Query: 94  SLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
            +V  N+V   +   +  PE R +   Q   E +HS T+  +I +   +  +   LFN  
Sbjct: 141 GIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSETYSLLIDTYISEPRQRTYLFNAI 200

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P I  KA+WAL++              D +  F   L  F  V EG++F   FA I 
Sbjct: 201 DNIPCIRKKADWALKWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIF 247

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE +H +F   + + +        T+  +   + ++ EA 
Sbjct: 248 WLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------TRPSKDAVKAIITEAV 300

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  E +P   +G+N+    QY++F+A+R    +G   ++  T NPF +M E I L
Sbjct: 301 EIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLALGNTKVYNAT-NPFDFM-ENISL 358

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV +YQ+  
Sbjct: 359 AGKTNFFEKRVGDYQKAG 376


>gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 359

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 36/339 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNAR       P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ 
Sbjct: 18  LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 72

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141
           +   FF  ++ +  NN  +  Y  +  P   Q +L  AF   E +H   + +++ ++G+ 
Sbjct: 73  QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 130

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           E E +  + +  ++  K ++  ++              D  +E    L VF    EG+  
Sbjct: 131 ETE-YQAFMKYKAMKDKYDYMQRFN------------VDNKEEIATTLAVFGAFTEGVQL 177

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           +  FA +L+  R NKM G+ +   + +RDE+LH N  I +      E P +WT+  Q KS
Sbjct: 178 FASFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTE--QLKS 235

Query: 262 R------TMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           R      T++H E   +++A+       G  GL A   ++Y+++IA+RR  Q+GL+  + 
Sbjct: 236 RIYEACCTIIHFEDAFIDLAFE----VGGVEGLEARDVKKYIRYIADRRLLQLGLKENYL 291

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
             +NP  W+ ++++  +  NFFE RVTEY + A    WD
Sbjct: 292 IEQNPLTWLDQILNGVEHTNFFENRVTEYTRSATTGSWD 330


>gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Nomascus leucogenys]
 gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan
           troglodytes]
 gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo
           sapiens]
 gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 28/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WA
Sbjct: 59  QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++     S   T G +           V +   EG++F   FA I  L +   M G+  
Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +         +L  K  +++ R ++ +A  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+E
Sbjct: 219 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276

Query: 343 YQQGA 347
           YQ+ A
Sbjct: 277 YQRFA 281


>gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Boryong]
 gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 329

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 36/339 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNAR       P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ 
Sbjct: 3   LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141
           +   FF  ++ +  NN  +  Y  +  P   Q +L  AF   E +H   + +++ ++G+ 
Sbjct: 58  QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 115

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           E E +  + +  ++  K ++  ++              D  +E    L VF    EG+  
Sbjct: 116 ETE-YQAFMKYKAMKDKYDYMQRFN------------VDNKEEIATTLAVFGAFTEGVQL 162

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           +  FA +L+  R NKM G+ +   + +RDE+LH N  I +      E P +WT+  Q KS
Sbjct: 163 FASFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTE--QLKS 220

Query: 262 R------TMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           R      T++H E   +++A+       G  GL A   ++Y+++IA+RR  Q+GL+  + 
Sbjct: 221 RIYEACCTIIHFEDAFIDLAFE----VGGVEGLEARDVKKYIRYIADRRLLQLGLKENYL 276

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
             +NP  W+ ++++  +  NFFE RVTEY + A    WD
Sbjct: 277 IEQNPLTWLDQILNGVEHTNFFENRVTEYTRSATTGSWD 315


>gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
 gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
          Length = 389

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   WE Y  A  ++W   EV +  DL  WK+   L ++E+  IK  L FFA S+
Sbjct: 86  VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  NI       +   E R +   Q   E VH  T+  +I     D   + ELF   +
Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP I  KA WA+++  T S            + F + LF F  V EG++F   F  I  
Sbjct: 203 TVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F +++   ++   P + T         ++ EA  
Sbjct: 250 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-NRPGVDT------IHAIVREAVD 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++++R   QIG+ P    ++NPF +M E I L 
Sbjct: 303 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGV-PTIWNSKNPFDFM-ENISLD 360

Query: 331 KEKNFFETRVTEY 343
            + NFFE RV +Y
Sbjct: 361 GKTNFFEKRVGDY 373


>gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 326

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 6/308 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    E Y       W P E+ +Q D+  +KS   L+  E+ +    +G+FASSE LV 
Sbjct: 20  RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ S  +D   ++N+  E   +  
Sbjct: 77  NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLEDKLLKE 136

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EG++FY+ FA   ++    KM
Sbjct: 137 KQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  +  ENP +    +F +  R  + +A  LE+ Y 
Sbjct: 197 KNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVDDYQFVENIRQSIIDAVELELNYL 256

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P F   +NP  ++ +  D+KK  NF
Sbjct: 257 KTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315

Query: 336 FETRVTEY 343
           FE   TEY
Sbjct: 316 FEVSSTEY 323


>gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
 gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
          Length = 322

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   WE Y  A  ++W   EV +  DL  WK+   L ++E+  IK  L FFA S+
Sbjct: 19  VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  NI       +   E R +   Q   E VH  T+  +I     D   + ELF   +
Sbjct: 76  GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP I  KA WA+++  T S            + F + LF F  V EG++F   F  I  
Sbjct: 136 TVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIFW 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F +++   ++   P + T         ++ EA  
Sbjct: 183 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-NRPGVDT------IHAIVREAVE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++++R   QIG+ P    ++NPF +M E I L 
Sbjct: 236 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGV-PTIWNSKNPFDFM-ENISLD 293

Query: 331 KEKNFFETRVTEY 343
            + NFFE RV +Y
Sbjct: 294 GKTNFFEKRVGDY 306


>gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 400

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 166/342 (48%), Gaps = 23/342 (6%)

Query: 17  VNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +D K+M+    +++N    +KY W  + Y    NN W+P E+ M  D+  +++   L 
Sbjct: 69  IGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQYRT---LP 125

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +SL  NN+   I ++++  E    L  QAF+EAVHS ++ Y++
Sbjct: 126 VAERRAYDKILSFLVFLDSLQTNNVPF-IAQYITANEAVLCLTIQAFQEAVHSQSYSYML 184

Query: 136 TSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  E+   +R+   + A+  +            F     D  +  L  + V  
Sbjct: 185 DTICSPDERTEILYQWRDDEHLLARNKFI--------GDLFMAFQNDQSERNLMRVLVAN 236

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++++++++E P L+
Sbjct: 237 YILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVERPDLF 296

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + E  ++ R M+ E    EIA+ H  +     GL       Y+Q++AN R   +G    +
Sbjct: 297 SAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLGFA--Y 354

Query: 314 KYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            Y +N        W+S+  D    K +FFE + T Y +   +
Sbjct: 355 IYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAM 396


>gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 400

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+
Sbjct: 81  MFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASD 138

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+   
Sbjct: 139 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 198

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P IT KANWA+++              D +  F   L  F  V EG++F   FA I  
Sbjct: 199 TIPCITKKANWAIRWIN------------DRESTFASRLVAFAAV-EGIFFSGSFASIFW 245

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       H+  +   +    ++ EA  
Sbjct: 246 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HMNHRPDPKVVEEIIVEAVG 298

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L 
Sbjct: 299 IEQEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLA 356

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 357 GKTNFFEKRVGDYQKAG 373


>gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 337

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 148/319 (46%), Gaps = 28/319 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y +A  + W   E+ +  D A W+    LTD ER  I R L FFA+S+
Sbjct: 30  IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 86

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
            +V  N+       +  PE R +   Q   E VHS  +  +I +   D  E    F+   
Sbjct: 87  GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 146

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   I  KA+WAL++    +SP            F   L  F  V EG+ F   FA I  
Sbjct: 147 QFECIKKKADWALRWIDDRNSP------------FPVRLIAFAAV-EGIMFSGSFAAIFW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   IK        K  Q++   ++ EA  
Sbjct: 194 LKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKPSQEQVYEIIKEAVS 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LE  Y  E +P   +G+N     QY++++A+    ++G   ++    NPF +M E + ++
Sbjct: 247 LEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLLTELGYPKVYN-ASNPFDFM-ENLSIE 304

Query: 331 KEKNFFETRVTEYQQGAEL 349
            + NFFE RV+EYQ+   L
Sbjct: 305 AKTNFFERRVSEYQRAGVL 323


>gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis
           str. Jake]
 gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 324

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ +
Sbjct: 12  PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQAD-I 68

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             NN  +  Y ++  P     ++  AF   E +H   + Y++ ++G+ E E +  + +  
Sbjct: 69  EVNNCYMRHYSNIFKP-TEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K +    Y Q      F    K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYD----YMQ-----KFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W    + +    L+EA  + +
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHE----LYEACKIIV 233

Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           +   E +   F      GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++
Sbjct: 234 SLEDEFINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILN 293

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE RVTEY + A
Sbjct: 294 GVEHTNFFENRVTEYARAA 312


>gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo
           laibachii Nc14]
          Length = 1611

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++++  ++P +  E    +  +  L    +   L P++    W+ Y  A  + W   E+ 
Sbjct: 49  LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W +   ++D+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 109 LVHDMNDWLN---ISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E   L      +P +T KA WAL++            
Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKWC----------- 214

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D       +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F
Sbjct: 215 --DPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +++  + P       +     ++ +A ++E  +  +++P   +G+N+    QY++
Sbjct: 273 ACLMYSKLVNKLP-------EASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R  H +G+  L+ +T NPF WM ++I L+ + NFFE RV EY +   +
Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWM-DMISLQGKTNFFEKRVGEYAKSGTI 375


>gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1]
 gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1]
          Length = 333

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 26/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   WE Y  A  + W   EV +  DL  W+++  LT+ ER  I   L FFA S+
Sbjct: 22  LFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISHILAFFAGSD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V +N++    + L+ PE   +   Q   E VHS  +  +I     D      LFN   
Sbjct: 80  GIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQRKHMLFNAID 139

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VPSI  KA W +++              D D+    D  V +   EG++F   FA I  
Sbjct: 140 TVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFFSGSFAAIFW 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    ++I RDE LH +F I +  N ++ E      +   +K   ++ +A 
Sbjct: 187 LKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYLRPE-----CRSSDEKVINIVTDAV 241

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  E++P   +G+N     +Y++F+A+R  +++    ++   +NPF +M+  I L
Sbjct: 242 RIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFDFMTS-ISL 299

Query: 330 KKEKNFFETRVTEYQQ 345
           + + NFFE +V+EY++
Sbjct: 300 EGKTNFFEKKVSEYKR 315


>gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
 gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
          Length = 313

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 32/318 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W  Y  A +  W   EV +  D   +  K  LTD+ER  I++ L FFA+++
Sbjct: 8   LFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150
           S+V  NI+  + R +   E + +  +Q   E +H+  +  +I +L  DE     L N + 
Sbjct: 66  SIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLNGFE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WA++Y +  +               L +  + + + EG++F   FA I  
Sbjct: 126 SMPCVRRKAEWAMKYIENENVT-------------LAERLIAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN---QIKIENPHLWTKEFQQKSRTMLHE 267
           +     M G+    + I RDE LH NF     N     K++ P +           M  E
Sbjct: 173 MKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDVPTV---------SDMFAE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+   P   +TENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKY-PKIYHTENPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQ 345
            L+ + NFFE RV EY++
Sbjct: 282 SLEGKTNFFEKRVGEYKR 299


>gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 379

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            GE  +   ++ +L        L P++Y   W  Y  A  + W   E+ +  D+  W   
Sbjct: 45  VGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW--- 101

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LT+ ER  + R L FFASS+ +V  N+V      +  PE R +   Q   E VHS T+
Sbjct: 102 SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSETY 161

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   D  E   LF     +PSI  KA WAL            T T D    F + 
Sbjct: 162 SLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWAL------------TWTSDKSTTFAER 209

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F VV EG++F   FA I  + +   + G+    + I RDE +H +F   +   ++ +
Sbjct: 210 LVAFAVV-EGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLR-K 267

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            PH            ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G
Sbjct: 268 RPH------SDTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSLG 321

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            +  + + +NPF +M E+I ++ + NFFE RV++Y + 
Sbjct: 322 NDKHY-HVDNPFDFM-ELISMEGKANFFEKRVSDYAKA 357


>gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo]
          Length = 399

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D++ W+    L  +E+  +   L FFA+S+
Sbjct: 89  VFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWEK---LKSEEKHFVSHVLAFFAASD 145

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 146 GIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYVKDPTERDFLFNAIE 205

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++              D    F + +  F  V EG++F   FA I  
Sbjct: 206 TMPCVKEKADWALRWIN------------DEQSSFGERVVAFAAV-EGIFFSGSFASIFW 252

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  K  Q++   ++ +A  
Sbjct: 253 LKKRGVMPGLTFSNELISRDEGLHCDFACLMFS-------HLKNKPSQERVYDIIRDAVR 305

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E ++  E +P   +G+N     QY++F+A+R   ++G  P     ENPF +M   I L+
Sbjct: 306 IEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGC-PKIWNVENPFDFMDN-ISLE 363

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 364 GKTNFFEKRVGEYQK 378


>gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 352

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 165/331 (49%), Gaps = 20/331 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    LKY W  + Y  A NN W+P E+ +  D+   K    L   E+    R L F
Sbjct: 34  TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRKLDQHEKRAFDRILSF 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   N+   +  +++  E    L  Q ++E++HS ++ YI+ ++   E    + 
Sbjct: 91  LTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            +++E   +  +  +   QY + L          D + +F++ L   Y++ EG++FY+GF
Sbjct: 150 YLWKEDDHLLRRNEFIGEQYNEFL--------VDDNEFKFVRALIANYIL-EGIYFYSGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           +   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E P L+T E     R ML
Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKERPDLFTPEATIVYRDML 260

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322
            E    EI +    +     GL+    E Y++++ N R   +G +PLF+ YTE P    W
Sbjct: 261 KEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLGFDPLFEGYTEIPQSMKW 320

Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           + E  D  + K +FFE +VT Y + + ++ D
Sbjct: 321 VDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351


>gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 36/349 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A  T L P  A E         +L   SD   + P+++   WE Y  A  + W   EV +
Sbjct: 3   AAPTLLPPCDAEEP--------LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGL 54

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   W     L+ DER  I   L FFA+S+ +V  N+       +   E R +   Q 
Sbjct: 55  SADARHWD--EALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQI 112

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  ++ +   D  E   LF     VP++  KA+WA+++             
Sbjct: 113 AIENIHSEMYSLLLETYIRDHVEKDRLFRAIDTVPAVRRKADWAMRWI------------ 160

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D  + F + +  F  V EG++F   F  I  L +   M G+    + I RDE LH +F 
Sbjct: 161 -DGGERFAERIVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 218

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +   ++        K  + + R ++ +A  +E  +  + +P   VG+N     QY++F
Sbjct: 219 CLLYELLR-------NKLDEARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEF 271

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +A+R    +G + ++  T NPF WM E+I L  + NFFE RV +YQ+ +
Sbjct: 272 VADRLLMALGCKKMYNVT-NPFDWM-ELISLMGKTNFFEKRVGDYQKAS 318


>gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           curvus 525.92]
 gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           curvus 525.92]
          Length = 340

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +     LTD
Sbjct: 14  NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTD 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ 
Sbjct: 72  AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           ++  +   ++ M +    +  K ++       +SS       +  D++ L  + V   + 
Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E   L+T E
Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRAERSDLFTPE 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++K   M  +A  LEI +         +G      E+Y+ ++ ++R   IGL+  +   
Sbjct: 244 MEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRLVAIGLKRKYN-A 302

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           ++P  W+ +      +K NFFE++VT Y +G+
Sbjct: 303 KHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS 334


>gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum
           PN500]
          Length = 323

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 28/323 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+K+   W+ Y  A  + W   E+ +  DL  W+ K  L D+ER  I 
Sbjct: 7   ILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQDK--LNDNERYFIS 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   +  
Sbjct: 65  NVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTYIQNPA 124

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P +  KANWAL++    +S             F + L  F  V EG++
Sbjct: 125 EKTKLFNAIETIPCVQKKANWALKWISNSTS-------------FAERLVAFAAV-EGIF 170

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L + N M G+    ++I RDE LH  F   + ++       L  K   + 
Sbjct: 171 FSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSK-------LVNKLDAKT 223

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +++ +A   E  +  +++P   +G+N     +Y++F+A+     +G + ++  T NPF
Sbjct: 224 IESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN-TANPF 282

Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343
            WM E+I +    NFFE R T Y
Sbjct: 283 DWM-ELISIDTRTNFFEHRNTSY 304


>gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens]
          Length = 297

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 28/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WA
Sbjct: 59  QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++     S   T G +           V +   EG++F   FA I  L +   M G+  
Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +         +L  K  +++ R ++ +A  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPPEERVREIIVDAVKIEQEFLTEALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+E
Sbjct: 219 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276

Query: 343 YQQGA 347
           YQ+ A
Sbjct: 277 YQRFA 281


>gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 379

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++    W+ Y  A  + W   E+ +  DL  W   + LTD+ER  IK  L FFA+S+
Sbjct: 72  LFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDW---SKLTDNERHFIKHVLAFFAASD 128

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  N+ +     +  PE R +   Q   E +HS  +  +I +     +++  L     
Sbjct: 129 GIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIE 188

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +T KA+WA+++     S             + + L  F  V EG++F   F  I  
Sbjct: 189 TIPCVTKKAHWAIKWCDPRVS------------SYPERLLAFAAV-EGIFFSGSFCSIFW 235

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE +H +F   + +++  + P     E  + + T+ HE   
Sbjct: 236 LKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIVRDAVTIEHE--- 292

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
               +  +++P   +G+N+    QY++F+A+R  + +G+  ++ + +NPF WM ++I L+
Sbjct: 293 ----FVRDSLPVELIGMNSGLMCQYIEFVADRLLYSLGVSKIY-HAKNPFDWM-DMISLQ 346

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EY +  
Sbjct: 347 GKTNFFEKRVGEYSKAG 363


>gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb18]
          Length = 325

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 27/308 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W+ Y  A  + W   EV +  DL  W   N L DDER  I   L FFA+S+ +V  N+V 
Sbjct: 12  WQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
                +  PE R +   Q   E +HS T+  +I +   +  +   LF+    +P I  KA
Sbjct: 70  RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +WA+++ +            D +  F Q L  F  V EG++F   FA I  L +   M G
Sbjct: 130 DWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPG 176

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++    H  + E  QK   ++ EA  +E  +  + 
Sbjct: 177 LTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVAIEQEFLTDA 229

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M   I L  + NFFE R
Sbjct: 230 LPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKR 287

Query: 340 VTEYQQGA 347
           V +YQ+  
Sbjct: 288 VGDYQKAG 295


>gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 322

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K+   W+ Y  A  + W   E+ +  DL  W     LT+ E+  I 
Sbjct: 1   MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  ++ +   D  
Sbjct: 58  HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117

Query: 144 ELFNMYRE---VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  ++ R    VP++  KA WAL++ Q+              + F + L  F  V EG++
Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS-------------SECFAERLIAFACV-EGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K    H    E  Q+
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK----HPLEPERLQE 219

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G++ ++  T NPF
Sbjct: 220 ---IVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E I L+ + NFFE RV EYQ+  
Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNG 301


>gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 340

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV   DD+  +     LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTDDVRDYAC--NLTTAEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +    +  
Sbjct: 93  NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRK 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+           D++ L  + V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDYISSVYEELAGEV-------TDEKLLLAM-VANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+T E + K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ + R   IGL+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITGNQIMGFTDDIIEEYIHYLVDDRLTSIGLKKLYN-AKHPIKWVDDFAKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
           H]
 gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 349

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 161/330 (48%), Gaps = 29/330 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL   K    L ++E+ 
Sbjct: 30  NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF+    +P++  KA WA ++    +S                +  V     E
Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F + +
Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSRKIF-HAK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 344

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 173/335 (51%), Gaps = 21/335 (6%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL  +K    L  +ER 
Sbjct: 20  KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPEERT 76

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   I  +++  E    L  Q+F+EAVHS ++ Y++ S+  
Sbjct: 77  AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135

Query: 141 DE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            E   E+   +++   I  K N  +   Y + +++P+        +   ++ L   Y++ 
Sbjct: 136 PEERNEILYQWKD-DEILLKRNKFIGDLYNEFINNPN--------EYNLIKTLMANYIL- 185

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ ENP  +T +
Sbjct: 186 EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQSENPESFTTD 245

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
            + + + M+      EI + H  +     G+N    E Y++++ N+R  +IGL  LF+ +
Sbjct: 246 LKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKEIGLGMLFEGF 305

Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            ENP  W+  V +    K +FFE + T Y + + L
Sbjct: 306 EENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340


>gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
           chabaudi]
 gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium
           chabaudi chabaudi]
          Length = 349

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 159/330 (48%), Gaps = 29/330 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++LN  S    L P+ Y   W  Y  A  + W   E+ +  DL   K    L  +E+ 
Sbjct: 30  NEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLLIDNYIR 146

Query: 141 DEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E  N++     +P+I  KA WA ++    +S                +  V     E
Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++
Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 305 NPFSWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
 gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N + D+ER  I   L FFA+S+
Sbjct: 98  LFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 155

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +   E R +   Q   E +HS T+  +I S   D  +   LF+   
Sbjct: 156 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDSYIKDPAQREYLFDAIE 215

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WAL++              D +  F + L  F  V EG++F   FA I  
Sbjct: 216 TIPCIKRKAEWALKWIS------------DQESTFAERLVAFAAV-EGIFFSGSFASIFW 262

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE +H +F   + + +K   PH       +  + ++ EA  
Sbjct: 263 MKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLK-RRPH------PEVVKHIIVEAVK 315

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T NPF +M ++I L+
Sbjct: 316 IEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSLGNEKHYNKT-NPFDFM-DMISLQ 373

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y +  
Sbjct: 374 GKTNFFEKRVSDYSKAG 390


>gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis]
 gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
 gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis]
 gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
          Length = 391

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D   W     LTD+ER  I   L FFA+S+
Sbjct: 84  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDWAR---LTDNERYFISHVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   +  E   LFN   
Sbjct: 141 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIREPQERDYLFNAIE 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WA+ +  + S+             F + +  F  V EG++F   FA I  
Sbjct: 201 TMPAVKRKADWAMSWISSKSA------------NFAERIIAFAAV-EGIFFSGSFASIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + + +       HL  +  +++   ++ +A  
Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMYH-------HLVQRPKRERIIEIIRDAVE 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 301 IEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGELGVGKIYN-TKNPFNFM-EMISLD 358

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 359 GKTNFFEKKVAEYQR 373


>gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299]
 gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299]
          Length = 324

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 29/326 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K    W+ Y  A  + W   E+ +  D   W +   L D+E+  I 
Sbjct: 1   MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 58  HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            +  LF     VP++  KA WAL++ Q+               E   +  V +   EG++
Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K  +P L     Q+ 
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK--HP-LDPARLQE- 219

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G+E ++  T NPF
Sbjct: 220 ---IVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM E+I L+ + NFFE RV +YQ+ 
Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKA 300


>gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
 gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
          Length = 363

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 169/341 (49%), Gaps = 21/341 (6%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V +  +RM+   + ++N    LKY W  E Y  A NN W+P E+ M  D+  ++    L+
Sbjct: 32  VELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQDYRK---LS 88

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +S+   N+   + ++++  E    L  QAF+EAVHS ++ Y++
Sbjct: 89  KAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 147

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++   E   ++   +++   + A+  +    Y + ++  S     K A         V 
Sbjct: 148 DTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSALALVKVA---------VA 198

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++ E P L
Sbjct: 199 NYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQKEEPQL 258

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T E  +  R M+ E    EI + H  +     GLN      Y+Q++ N RC  +G EPL
Sbjct: 259 FTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRCENLGFEPL 318

Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           ++ + E P    W+S+  +    K +FFE + T Y + + +
Sbjct: 319 YEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 359


>gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 351

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HWMP EVP+ +D   W  K  ++D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ E   +
Sbjct: 70  VQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AK +    Y Q            D+D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 KAKHD----YMQLFGV--------DSDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDE+LH   GI  + Q  ++     TK  ++       +   LE A+
Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GITRLFQAFVQERDCMTKAVREDIIDCCQKTVRLEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                 +G V G++A   ++Y+++IA+ R  Q+G +P++   E+P PW++ +++  +  N
Sbjct: 236 IDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRATEYSKAA 308


>gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica]
          Length = 493

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 36/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A N   SP +  E  +  + +R +        + P++Y   W  Y  A  + W   EV +
Sbjct: 162 APNEPASPSKEDEPLLRENPRRFV--------IFPIEYHDIWHMYKKAEASFWTAEEVDL 213

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W++   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 214 SKDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 270

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++             
Sbjct: 271 AMENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------ 318

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  + + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 319 GDNEATYGERVVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 377

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +         HL  K  ++K + ++  A  +E  +  E +P   +G+N    +QY++F
Sbjct: 378 CLMFK-------HLVHKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEF 430

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 431 VADRLMLELGFSKIFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 475


>gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 310

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 36/327 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FFA SE
Sbjct: 9   LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE-LFNMYR 150
            ++  N++   Y  +   E R +L  QAF E +H+ T+   + +    ++E E LFN   
Sbjct: 66  GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLFNAIE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA W +++  +             D+     L  F +V EG++F   F  I  
Sbjct: 126 NVPTVKRKAEWVMKWISS-------------DKPLTMRLIAFGLV-EGLFFAGSFCAIYY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267
             + + + G+A     I RDE LH +F       + Q K+          QQ+   +  E
Sbjct: 172 FRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  E +P   +G+NA    QY++  A+      G +P+F Y +NPF +M  ++
Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYM-RLL 280

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           D++ + NFFE RVTEY+  Q  +L +D
Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
 gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
          Length = 325

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 27/308 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V 
Sbjct: 12  WQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
                +  PE R +   Q   E +HS T+  +I +   +  +   LF+    +P I  KA
Sbjct: 70  RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +WA+++ +            D +  F Q L  F  V EG++F   FA I  L +   M G
Sbjct: 130 DWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPG 176

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++    H  + E  QK   ++ EA  +E  +  + 
Sbjct: 177 LTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVAIEQEFLTDA 229

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M   I L  + NFFE R
Sbjct: 230 LPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKR 287

Query: 340 VTEYQQGA 347
           V +YQ+  
Sbjct: 288 VGDYQKAG 295


>gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
          Length = 339

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 29/338 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  +   + + +L  +S    + P++Y   WE Y  A  + W   EV +  D+  W++  
Sbjct: 8   GVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  + 
Sbjct: 66  -LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMYS 124

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            ++ +   D  E   LFN    +P +  KA WAL +    SS SF             + 
Sbjct: 125 LLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIH--SSTSFA------------ER 170

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++   
Sbjct: 171 LVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--K 228

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P +       +   ++HEA  +E  +  + +P   +G+N+    QY++F+A+R    +G 
Sbjct: 229 PLI-----SDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALGY 283

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +  +   ENPF WM E I L+ + NFFE RV +YQ+ +
Sbjct: 284 QRKYN-VENPFDWM-EFISLQGKANFFERRVGDYQKAS 319


>gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
 gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
          Length = 323

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W+ Y  A  + W   EV +  D+  W++K  L  DER  I   L FFA+S+
Sbjct: 15  IFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQNK--LNKDERYFISHVLAFFAASD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   D  E   L     
Sbjct: 73  GIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIKDPKEKDHLLRAIE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++ ++                F + L  F  V EG++F   F  I  
Sbjct: 133 TIPCVGKKADWALEWIES--------------DNFAERLIAFAAV-EGIFFSGSFCSIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    + I RDE LH +F   + +N +K + P       ++  + ++ +A 
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLKNKLP-------EETVQKIIADAV 230

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  E +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M E+I L
Sbjct: 231 EVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT-NPFDFM-ELISL 288

Query: 330 KKEKNFFETRVTEYQQGA 347
           + + NFFE RV EYQ+  
Sbjct: 289 QGKTNFFERRVGEYQKSG 306


>gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa]
          Length = 355

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 158/330 (47%), Gaps = 28/330 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  +
Sbjct: 49  SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 212

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 213 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 265

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 266 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFR 325

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             ENPF +M E I L+ + NFFE RV E +
Sbjct: 326 -VENPFDFM-ENISLEGKTNFFEKRVGEIR 353


>gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
 gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
          Length = 340

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +     LT 
Sbjct: 14  NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTQ 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ 
Sbjct: 72  AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           ++  +   ++ M +    +  K ++       +SS       +  D++ L  + V   + 
Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E P L+T E
Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTERPDLFTPE 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + K   M   A  LEI +         +G      EQY++++ ++R   IGL+  +   
Sbjct: 244 TEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIGLKRRYN-V 302

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            +P  W+ +      +K NFFE +VT Y +G+
Sbjct: 303 PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334


>gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 3 [Canis familiaris]
          Length = 338

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 41/337 (12%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +   S   T G +           
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+           
Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVFQ--------- 291

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                 ENPF +M E I L+ + NFFE RV EYQ+ A
Sbjct: 292 -----AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 322


>gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi]
 gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi]
          Length = 393

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W     LTD+ER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDWVR---LTDNERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS +   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVMMFQ-------HLVQRPSRERIIEIVSDAVT 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     +Y++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVELGVGKIYN-TKNPFTFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVGEYQR 375


>gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae]
 gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae]
          Length = 393

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W   + L DDER  I   L FFA+S+
Sbjct: 86  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN   
Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 203 TMPAVKRKADWALAW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F + +         HL  K  +++   ++ +A  
Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQKPRRERIIEIIRDAVD 302

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L 
Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 361 GKTNFFEKKVGEYQR 375


>gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana)
           tropicalis]
 gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis]
          Length = 346

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 156/341 (45%), Gaps = 39/341 (11%)

Query: 21  DKRMLNARSDVNQ-----------LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           DK + N  SD  +           + P+ Y   W+ Y  A  + W   EV +  DL  W+
Sbjct: 15  DKNLTNGHSDEEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDLVHWE 74

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L  +ER  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS 
Sbjct: 75  K---LKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSE 131

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D      LFN    +P +  KA WAL++              D    F 
Sbjct: 132 MYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWIS------------DRKASFG 179

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +   
Sbjct: 180 ERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFH--- 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               +L  K  +++   ++  A  +E  +  E +P   +G+N    + Y++F+A+R   +
Sbjct: 236 ----YLVKKPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVADRLLVE 291

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +G    FK  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 292 LGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 330


>gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           concisus 13826]
 gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           concisus 13826]
          Length = 340

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 160/332 (48%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +     LT+
Sbjct: 14  NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTE 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ 
Sbjct: 72  AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           ++  +   ++ M +    +  K ++       +SS       +  D++ L  + V   + 
Sbjct: 132 AICDNTDLIYEMEKHDDVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E P L+T E
Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTPE 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + K   M  +A  LEI +         +G      EQY+ ++ ++R   IGL+  +   
Sbjct: 244 TEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRLVAIGLKRKYN-V 302

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            +P  W+ +      +K NFFE +VT Y +G+
Sbjct: 303 AHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334


>gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
          Length = 331

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K  N+ +KR L  +S  +   P  Y WA+E ++ +   HW+ TEVPM +D+  WK +  L
Sbjct: 2   KVKNMTEKRNLLTQSR-DYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWKMR--L 58

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D+ER  + +   FF   +  V++  V         PE R  L   A  EAVH   + ++
Sbjct: 59  NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFY 193
           I ++G+ +     +Y E           LQY    +   F  G + + ++     +  F 
Sbjct: 119 IETIGMPDA----IYNEF----------LQYEAMAAKHEFFHGLRLNQNENIAAKMAAFS 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EGM  ++ F  +L+  R   M G+ +   + + DE+LH    I +  +   +NP LW
Sbjct: 165 AFTEGMQLFSSFVMLLNFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLW 224

Query: 254 TKEFQQKSRTMLH-----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             + +    ++       E + +++A+    M K    L     ++Y++FIA+RR   +G
Sbjct: 225 NDDLKSTIYSIAEKMVELEDSFIDLAFGVNQMQK----LAKEDVKKYIRFIADRRLSAMG 280

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           ++ +F   +NP PW+  ++ +    NFFE RV +Y +GA
Sbjct: 281 MKAIFNEKKNPLPWVDAMLGV-THTNFFENRVVDYAKGA 318


>gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans
           morsitans]
          Length = 396

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W   N L+D ER  I   L FFA+S+
Sbjct: 89  IFPIQYPEIWKMYKKAEASFWTAEEVDLSKDMDDW---NRLSDGERHFISHVLAFFAASD 145

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +  +DE E   LFN   
Sbjct: 146 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSLLIETYIMDEKEREYLFNAIE 205

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL +   +SS S   G +           + +   EG++F   FA I  
Sbjct: 206 TMPLVKKKAEWALAW---ISSHSANFGER----------IIAFAAVEGIFFSGSFASIFW 252

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH  F + +         HL  K  +++   ++ +A  
Sbjct: 253 LKKRGIMPGLTFSNEMISRDEGLHCEFAVLMFK-------HLIQKPSKERILEIITDAVK 305

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N+ S  +Y++++A+R   ++ +   +   ENPF +M++ I + 
Sbjct: 306 IEKEFLTEALPVDLIGMNSESMCKYIEYVADRLLLELDVGKYY-LAENPFEFMNK-ISID 363

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 364 GKTNFFEKRVGEYQK 378


>gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
 gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
          Length = 405

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 148/317 (46%), Gaps = 30/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY    E Y  A  + W   E+ +  D+  W   N L DDER  I   L FFA+S+
Sbjct: 89  LFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E +HS T+  +I +   ++ +   LF    
Sbjct: 144 GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q            D D  F Q L  F  V EG++F   FA I  
Sbjct: 204 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPTAVEAIITEAVS 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G +  +  T NPF +M   I L 
Sbjct: 304 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 361

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+  
Sbjct: 362 GKTNFFEKRVGDYQKAG 378


>gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
 gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
          Length = 354

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    +   L P++Y   WE Y  A  + W   EV    DL  +  K  L ++ER 
Sbjct: 24  DEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGDLYDFDHK--LKEEERR 81

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  ++     
Sbjct: 82  FIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENVHSEMYSVLLDHYVR 141

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN  + + ++  KA+WAL++  + +S             F + L  F  V E
Sbjct: 142 DPAERRQLFNAIQTIATVGKKADWALRWISSSNS-------------FAERLVAFACV-E 187

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I  L +   M G++     I RDE LH +F   +         HL  +  
Sbjct: 188 GIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACCLYG-------HLKNRLS 240

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++   ++ EA  LE  +  E +    +G+NA    QY++F+A+R    +G +  +  T 
Sbjct: 241 RERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYDKYYN-TV 299

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NPF WM E+I L+ + NFFE RV EYQ+   +  D
Sbjct: 300 NPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333


>gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 343

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 27/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W  Y  A  + W   EV +  D+  W+    L+  E+  IK  L FFA+S+
Sbjct: 29  LFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWER---LSSGEQHFIKHVLAFFAASD 85

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++    + +   E R +   Q   E VHS  +  +I +   +  E   LFN   
Sbjct: 86  GIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMYSVLIDTYIRERAERERLFNAIE 145

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++  KA+WA  +  +      TT T      F + L  F VV EG++F   FA I  
Sbjct: 146 TIPAVKRKADWAFNWITS------TTAT------FGERLLAFAVV-EGVFFSGSFAAIFW 192

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F + +  +  +  P       +++   ++ EA  
Sbjct: 193 LKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRYLVNRPS------EERVGEIVREAVT 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R    +G++ ++  T+NPF +M ++I L 
Sbjct: 247 IEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDLGMKRIYN-TKNPFDFM-DMISLD 304

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV +YQ+
Sbjct: 305 GKTNFFEKRVGDYQR 319


>gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/
           ribonucleoside-diphosphate reductase/ transition metal
           ion binding [Arabidopsis thaliana]
 gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C;
           AltName: Full=Ribonucleoside-diphosphate reductase TSO2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit C
 gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
           thaliana]
          Length = 332

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D ER  IK
Sbjct: 9   LLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDGERHFIK 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D  
Sbjct: 67  HVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P +  KA WA+++              D  Q F + +  F  V EG++
Sbjct: 127 ERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFACV-EGIF 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +   +K +         +++
Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLS-------EER 225

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  T NPF
Sbjct: 226 VKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT-NPF 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 285 DWM-ELISLQGKTNFFEKRVGDYQKAS 310


>gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 329

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D ER  IK
Sbjct: 6   LLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERHFIK 63

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D  
Sbjct: 64  HVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 123

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P +  KA WA+++              D  Q F + +  F  V EG++
Sbjct: 124 ERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFACV-EGIF 169

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +   +K +         +++
Sbjct: 170 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLS-------EER 222

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  T NPF
Sbjct: 223 VKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT-NPF 281

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 282 DWM-ELISLQGKTNFFEKRVGDYQKAS 307


>gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 156/330 (47%), Gaps = 29/330 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+K+   WE Y  A  + W   EV +  D   W +   L D+E+  I 
Sbjct: 29  LLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHFIS 85

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  
Sbjct: 86  HVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPK 145

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + +LF     VP++  KA+WAL++  +             D  F + L  F  V EG++
Sbjct: 146 KKSDLFRAIHTVPTVAKKADWALKWIGS-------------DASFAERLVGFACV-EGIF 191

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + +   +ENP L  K   Q 
Sbjct: 192 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSM--LENP-LSEKVLHQ- 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G+  L+    NPF
Sbjct: 248 ---LVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-NPF 303

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            WM E+I L+ + NFFE RV +YQ+   ++
Sbjct: 304 DWM-ELISLQGKANFFEHRVDQYQKAGVMQ 332


>gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
 gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
          Length = 324

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 156/317 (49%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W  Y  A  + W   E+ +  DL  W++K  L+DDER  +K  L FFA+S+
Sbjct: 17  LFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWETK--LSDDERHFVKHVLAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   D+ E   LFN   
Sbjct: 75  GIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTYIKDQKEKNHLFNALD 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA+WAL++    S              F + L  F  V EG++F   F  I  
Sbjct: 135 TIDCVRKKADWALRWIDNGS--------------FAERLVAFAAV-EGIFFSGSFCSIFW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   +  +      HL  +  +++ + ++ +A  
Sbjct: 180 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------HLIHQLSKEQVQEIILDAVE 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R   ++G   +F  T NPF +M ++I ++
Sbjct: 234 IEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN-TTNPFDFM-DMISIQ 291

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 292 GKTNFFEKRVAEYQKSG 308


>gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str.
           17XNL]
 gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii]
          Length = 349

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 159/330 (48%), Gaps = 29/330 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++LN  S+   L P+ Y   W  Y  A  + W   E+ +  DL   K    L  +E+ 
Sbjct: 30  NEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIK 146

Query: 141 DEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E  N++     +P+I  KA WA ++    +S                +  V     E
Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +   + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++
Sbjct: 246 ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333


>gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 345

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 159/320 (49%), Gaps = 30/320 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y W ++ +L+    HW+P EVP+ +D+  W+ K  L   E+ ++ +   FF  ++  
Sbjct: 35  PFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQKK--LLPHEKNLLTQIFRFFTQADVE 92

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V NN  L  Y  +  P E    +   A  E VH   + +++ ++G+ E E   F  Y+E+
Sbjct: 93  V-NNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETEYSAFLKYKEM 151

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q     +F  G K   +E  + + VF    EG+  +  FA +L+  
Sbjct: 152 KD-------KYDYMQ-----NFNMGDK---REIAKTVAVFSAFTEGLQLFASFAILLNFP 196

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTML-HE 267
           R NKM G+ +   + +RDE+LH N  I + N    ENP L      KE  +   T++ HE
Sbjct: 197 RFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKKEIYEACSTIIEHE 256

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +++A+    +     GL A   ++Y+++IANRR  Q+ L  L++  ENP  W+ +++
Sbjct: 257 DAFIDLAFEMGDIE----GLKAEEVKKYIRWIANRRLAQLRLNDLYEVKENPLTWLDDML 312

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           +  +  NFFE R TEY + +
Sbjct: 313 NGVEHMNFFEGRATEYSKAS 332


>gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia
           profundicola AmH]
 gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia
           profundicola AmH]
          Length = 346

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 15/316 (4%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           L Y WA+  +     N W P EV + +D   ++    L   E+ M  + L      +S+ 
Sbjct: 35  LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
            NN    +   ++ PE    ++RQA+EEA+HS ++  ++ S+ L+  E++ M+R   ++ 
Sbjct: 92  TNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEIYEMWRVDANLR 151

Query: 157 AKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
            K        + + +     GTK  + D E    + V     EG++FY GFA    L RA
Sbjct: 152 KK-------NEFIGNVYEEWGTKALNGDDEAKIYMIVANQCLEGIYFYNGFASFYVLARA 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM+G A+  ++I RDE  H     ++  +IK E P L+T E  +  + ML+ A  LE  
Sbjct: 205 GKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIKDMLYAAYELERD 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDLKKE 332
           +         +G++    +++ Q++AN+R   +GL+ LF     +NP  W        ++
Sbjct: 265 WGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPISWFDGFSSFNEQ 324

Query: 333 K-NFFETRVTEYQQGA 347
           K NFFE  V  Y +G+
Sbjct: 325 KTNFFEGNVVNYSKGS 340


>gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A L+E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC
           30864]
          Length = 352

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 36/343 (10%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GLS ++  E  +  +  R +        L P++Y   W+ Y  A  + W   EV +  DL
Sbjct: 25  GLSKLELDEPLLKPNPHRFV--------LFPIQYHDVWKMYKKAEASFWTAEEVDLSKDL 76

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W   + L  +ER  I   L FFA+S+ +V  N++L     +  PE R +   Q   E 
Sbjct: 77  NDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIEN 133

Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  +I     D  E   LFN    +P +  KA WAL++              D  
Sbjct: 134 IHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWIS------------DRR 181

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             F   L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 182 STFAHRLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLF 240

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
             +         +        ++ +A  +E  +  + +P   +G+N    + Y++F+A+R
Sbjct: 241 GLLN-------NRPSNADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVADR 293

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               +G E  +K  ENPF +M ++I L+ + NFFE RV EYQ+
Sbjct: 294 LLVALGQEKHYK-VENPFDFM-DLISLQGKTNFFERRVGEYQK 334


>gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus]
 gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus]
          Length = 325

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W+ Y  A  + W   EV +  D + W     L+D+E+  IK  L FFA+S+
Sbjct: 18  VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +  LD  E   LFN   
Sbjct: 75  GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KANWA ++ +   S + T G +           V +   EG++F   FA I  
Sbjct: 135 NMNCVKQKANWAKKWIE---SKNRTYGER----------LVAFAAVEGIFFSGSFAAIFW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE LH +F         I   HL         R ++ EA  
Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFAC-------IMFKHLLNPPLNSVVRDIIIEAVN 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G +  +  ++NPF +M E I L+
Sbjct: 235 IEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY-CSKNPFDFM-ENISLE 292

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 293 GKTNFFEKRVSEYQK 307


>gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 322

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 160/331 (48%), Gaps = 31/331 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   +  Y  A    W   E+    DL   K    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDL---KDFEKLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ ++  R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGELFNMYR---EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E  N++     +P++  KA WA ++    +S                +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P       +
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217

Query: 259 QKSRTMLHEATLLEI--AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q  + ++ EA  +E+  ++  E++P   +G+N+    QY++F+A+R    +G   +F ++
Sbjct: 218 QMVQNIVKEAGGVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HS 276

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 277 KNPFNWM-DLISLQGKTNFFEKRVADYQKSG 306


>gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST]
 gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W++   L   ER  I   L FFA+S+
Sbjct: 93  IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET---LKPSERHFISHVLAFFAASD 149

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 150 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREFLFNAIE 209

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +   +SS     G +           V +   EG++F   FA I  
Sbjct: 210 TLPCVKRKADWALNW---ISSKKANFGER----------VVAFAAVEGIFFSGSFAAIFW 256

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  +++   ++ +A L
Sbjct: 257 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------YLVQKPSKERVTEIIRDAVL 309

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G E ++ +T+NPF +M E I L+
Sbjct: 310 IEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGCEKIY-HTKNPFSFM-EFISLE 367

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 368 GKTNFFEKKVGEYQK 382


>gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
 gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 167/321 (52%), Gaps = 18/321 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY WA + Y +  NN W+P E+ + +D+   K    LTD ER    + + F    +S+ 
Sbjct: 32  IKYSWASDFYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
           + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++   +   ++++ +RE   
Sbjct: 89  SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEQ 147

Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + A  Y +    P            FL+ +   Y++ EG++FY+GF+   +L R
Sbjct: 148 LLERNKFIAGIYEKFNKEPEIYN--------FLRVIMANYIL-EGIYFYSGFSFFYTLAR 198

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM   +  ++YI RDE  HL    ++I ++K ENP+++T+E +++ R M+      EI
Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEEFREMMRMGVEHEI 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            +         +GLN    ++Y+++++N R   IGL+PL+ +  ++P  W+     L   
Sbjct: 259 KWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHPMEWIDSFSKLNST 318

Query: 333 K-NFFETRVTEYQQGAELKWD 352
           K +FFE +VT Y + A   +D
Sbjct: 319 KTDFFEAKVTNYTKAAVFDFD 339


>gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis]
          Length = 388

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W  Y  A  + W   EV +  D+A W   N L D+ER  I   L FFA+S+
Sbjct: 79  LFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NRLNDNERHFISHVLAFFAASD 135

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  +   LFN   
Sbjct: 136 GIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSLLIDTYISDASQRQFLFNAIE 195

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KANWAL +   +S  S T         F + +  F  V EG++F   FA I  
Sbjct: 196 TLPCVAKKANWALNW---ISHDSAT---------FAERVIAFAAV-EGIFFSGSFAAIFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         H+  K  +++  +++ +A  
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HIVQKPSEERVISIIKDAVT 295

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G   ++  +ENPF +M E I L+
Sbjct: 296 IEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCPKVYN-SENPFDFM-EHISLE 353

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 354 GKTNFFEKKVGEYQK 368


>gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
 gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
          Length = 340

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 13/332 (3%)

Query: 18  NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N+ D+R+ N     +      KY WA + +     N W P EV    D+  +     LT 
Sbjct: 14  NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDYAY--SLTQ 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ 
Sbjct: 72  AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           ++  +   ++ M +    +  K ++       +SS       +  D++ L  + V   + 
Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E P L+T E
Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTERPDLFTSE 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + K   M   A  LEI +         +G      EQY++++ ++R   IGL+  +   
Sbjct: 244 MEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIGLKRRYD-A 302

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
            +P  W+ +      +K NFFE +VT Y +G+
Sbjct: 303 RHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334


>gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis]
          Length = 335

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L +  D   + P+KY   WE Y  A  + W   EV +  D+  W+    L+DDER  + 
Sbjct: 16  LLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWER---LSDDERHFVS 72

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+     + +  PE R +   Q   E +HS  +  ++ +   D  
Sbjct: 73  HVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSLLLEAYIKDPK 132

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF+    VP +  KA+WAL++                  +   +  + +   EG++
Sbjct: 133 EKDKLFHAIDTVPVVRKKAHWALKWING--------------SDLFSERLIAFACVEGIF 178

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +         H+  +  +++
Sbjct: 179 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYR-------HIHNRLSEER 231

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ +A  +E  +  + +P   +G+N+    QY++F+A+R    +G  P      NPF
Sbjct: 232 VAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALG-NPKVYNVSNPF 290

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV +YQ+  
Sbjct: 291 DWM-ELISLQGKTNFFEKRVGDYQKAG 316


>gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 355

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 153/320 (47%), Gaps = 29/320 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   WE Y  A  + W   E+ +  DL  W +   L D ER  I   L FFA+S+
Sbjct: 46  LFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHFISHVLAFFAASD 102

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 103 GIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKDPQERDKLFNAID 162

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA+WAL++ +  S              F + L  F  V EG++F   F  I  
Sbjct: 163 TLDCVKKKADWALRWIEQAS--------------FAERLVAFAAV-EGIFFSGSFCSIFW 207

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH +F   +         HL  K  +++ R ++ +A  
Sbjct: 208 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYAN------HLQNKLPEERVREIITDAVA 261

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T NPF +M E+I L+
Sbjct: 262 IEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-NPFDFM-EMISLQ 319

Query: 331 KEKNFFETRVTEYQQGAELK 350
            + NFFE RV EYQ+   +K
Sbjct: 320 GKTNFFEKRVGEYQKAGVMK 339


>gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 394

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  +  + W   E+ +  DL  W   N + ++ER  I R L FFA+S+
Sbjct: 83  IYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMNENERFFISRVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE +     Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 141 GIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAID 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WA+++ Q+             D  + + L  F  V EG++F   FA I  
Sbjct: 201 NIPFIRKKADWAIRWIQS------------EDALYAERLVAFAAV-EGIFFSGSFAAIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H ++   + + +K        K   +    ++ EA  
Sbjct: 248 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK-------NKPSSEIIEKIITEAVD 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R     G +  +  T NPF +M E I L 
Sbjct: 301 IEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKYYNVT-NPFDFM-ENISLA 358

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++YQ+  
Sbjct: 359 GKTNFFEKRVSDYQKAG 375


>gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae]
 gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16]
          Length = 365

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PL++   W+ Y  A  + W   EV +  D+  W+  NG   DE+  I R L FFA+S+
Sbjct: 58  IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 114

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   DE E   LFN   
Sbjct: 115 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERMKLFNAIF 174

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   I  KA+WAL++              D    F + L  F  V EG++F   FA I  
Sbjct: 175 EFEFIKKKADWALRWIS------------DTKASFAERLIAFAAV-EGIFFSGSFASIFW 221

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++        K  Q++   ++ +A  
Sbjct: 222 LKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLSQERIFEIIRDAVA 274

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++F+A+    ++G + L+   +NPF +M E I + 
Sbjct: 275 IEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGCDKLYN-VKNPFDFM-ENISID 332

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 333 GKTNFFEKRVSEYQR 347


>gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+  N   + E+  IK
Sbjct: 19  LLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +   D  
Sbjct: 76  HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   + +    +P I  KANWA+++ ++ SS             F + L  F  V EG++
Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +F       +  EN ++  K   ++
Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPTER 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  +  ++NPF
Sbjct: 236 IREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E+I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320


>gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 463

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 28/329 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+ Y  A  + W   EV +  DL  W     L ++ER 
Sbjct: 142 EETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDWVK---LKEEERR 198

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +   
Sbjct: 199 FISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSEMYSLLIDAYIK 258

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           ++ E   LF+    +P +  KA+WA+++ Q+  S             F + L  F  V E
Sbjct: 259 EQEEKTRLFHAIDNMPCVKKKADWAIEWIQSEES------------SFGERLVAFAAV-E 305

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I    +   + G+    + I RDE LH +F   + +       HL  K  
Sbjct: 306 GIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFS-------HLTYKPS 358

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ R ++ +A  +E  + +E +P G +G+N      Y++F+A+R   ++  + ++ + E
Sbjct: 359 KERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLELNCDKVY-HRE 417

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           NPF +M E I L+ + NFFE RV EYQ+ 
Sbjct: 418 NPFDFM-ENISLEGKTNFFEKRVGEYQKA 445


>gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 392

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 167/358 (46%), Gaps = 37/358 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52
           A +  + P+ AG + +  D   +  NA  +  Q        L P++Y   W KY    + 
Sbjct: 43  AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++    
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG-- 217

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           SS SF            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 218 SSASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 266 DEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+  
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 375


>gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
 gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream
           iridovirus]
          Length = 312

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 27/306 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  + W   EV +  D+  W  K  LT+ ER  +   L FFA ++ +V +N+V 
Sbjct: 14  WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71

Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159
              + L + PE R +   Q   E +H+  +  +I +L   E +  LF+   ++P + AKA
Sbjct: 72  NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA Q+      P  T             L  F  V EG+ F   FA I  L + + M G
Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   +  Q+         K  Q  +  ++ +A  +E A+  E 
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIISDAVDIETAFFREA 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    +G+N+ S + Y+QF+A+R    +G   ++  + NPF +M   I ++ + NFFE R
Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMDN-ISIEGKTNFFERR 289

Query: 340 VTEYQQ 345
           V+EYQ+
Sbjct: 290 VSEYQR 295


>gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+  N   + E+  IK
Sbjct: 19  LLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +   D  
Sbjct: 76  HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   + +    +P I  KANWA+++ ++ SS             F + L  F  V EG++
Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +F       +  EN ++  K   ++
Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPTER 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  +  ++NPF
Sbjct: 236 IREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E+I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320


>gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
 gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
          Length = 325

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 32/327 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A ++ W   EV +  D   W S   L D ER  I 
Sbjct: 10  LLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYFIS 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+V      ++  E + +   Q   E +HS  +  +I +   D+ 
Sbjct: 67  NILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITDQD 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA+WAL++             KD    F   +  F  V EG++
Sbjct: 127 EKTHLFNAISTIPCIKKKADWALKW------------IKDEKSSFATRVIAFACV-EGIF 173

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQ 259
           F   FA I  L     M G+    + I RDE LH +F   ++NQ  I ++PH+       
Sbjct: 174 FSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFAC-LLNQYLINKSPHIL------ 226

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               ++ EA  +E  +   ++P   +G+N     QY++F+A+R    +GLE  +  T NP
Sbjct: 227 ---DIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLNP 282

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG 346
           F +M E I L  + NFF+ R ++YQ+ 
Sbjct: 283 FDFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
 gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
          Length = 360

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 25/351 (7%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI        +D +RM+   + ++N    LKYGW  + Y  A NN W+P E+ M  D+  
Sbjct: 21  PIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDVQD 80

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+    + L F    +S+   N+   + + ++  E    L  QAF+EA+H
Sbjct: 81  YRR---LSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEAIH 136

Query: 128 SHTFQYIITSL-GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S ++ Y++ ++   DE  G L+  +R+   + A+  +     Q              +Q+
Sbjct: 137 SQSYSYMLDTICSPDERTGILY-QWRDDAHLLARNKFIGDLYQNFM----------VNQD 185

Query: 185 FLQDL--FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             Q +   V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     ++
Sbjct: 186 VCQIVKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSIL 245

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +++ E P ++T     + R M+ +    EIA+ H  +    VGLN      Y+Q++ N 
Sbjct: 246 REMQKEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNL 305

Query: 303 RCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           RC  +G +P+++ + + P    W+ +  +    K +FFE R T Y +   L
Sbjct: 306 RCTDLGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSL 356


>gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 353

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 167/352 (47%), Gaps = 27/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N TG +P ++  +   V+ +  L   + + +  P +Y WA++ +L+    HW+P EVP
Sbjct: 4   ITNATGTAP-ESAPQPTGVEARLDLLTSNPIYK--PFRYPWAYDAWLTQQRVHWLPEEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + DD+  W     LT+ E+ ++ +   FF  S+  V NN  +  Y  +  P     ++  
Sbjct: 61  LADDVKDWHRT--LTESEQHLVTQIFRFFTQSDVEV-NNCYMKHYSRVFKP-TEVLMMLS 116

Query: 121 AFE--EAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           AF   E +H   + +++ ++G+ E E   F  Y+E+            Y Q  S      
Sbjct: 117 AFSNIETIHIAAYSHLLDTIGMPEMEYSAFLKYKEMKD-------KYDYMQGFSV----- 164

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
              D+  E  + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH  
Sbjct: 165 ---DSKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCL 221

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQY 295
               +      ENP +WT   +     +  +    E A+       G V GL+    + Y
Sbjct: 222 SMARLFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTY 281

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           ++FIA+RR + +GL+ ++    NP PW+ ++++  +  NFFE R TEY + +
Sbjct: 282 IRFIADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRAS 333


>gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus]
 gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus]
 gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus]
          Length = 325

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W+ Y  A  + W   EV +  D + W     L+D+E+  IK  L FFA+S+
Sbjct: 18  VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +  LD  E   LFN   
Sbjct: 75  GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KANWA ++ +   S + T G +           V +   EG++F   FA I  
Sbjct: 135 NMNCVKQKANWAKKWIE---SKNRTYGER----------LVAFAAVEGIFFSGSFAAIFW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE LH +F         I   HL         R ++ EA  
Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFAC-------IMFKHLLNPPLNSVVRDIIIEAVN 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+A+R   ++G    +  ++NPF +M E I L+
Sbjct: 235 IEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY-CSKNPFDFM-ENISLE 292

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 293 GKTNFFEKRVSEYQK 307


>gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus]
          Length = 398

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DLA W+    L   E+  I   L FFA+S+
Sbjct: 91  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 147

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 148 GIVNVNLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 207

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +   +SS     G +           V +   EG++F   FA I  
Sbjct: 208 NLPCVKKKADWALNW---ISSKQANFGER----------VVAFAAVEGIFFSGTFASIFW 254

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  Q++   ++ EA L
Sbjct: 255 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEIIREAVL 307

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F A+R   ++G++ ++  T+NPF +M E I L+
Sbjct: 308 IEQEFLTKALPVDLLGMNCELMSQYIEFEADRLLLELGIDKIYN-TKNPFSFM-EFISLE 365

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 366 GKTNFFEKKVGEYQK 380


>gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 352

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 178/348 (51%), Gaps = 23/348 (6%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +++  
Sbjct: 18  EGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDYRN-- 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+    R L F    +S+   N+   +  +++  E    L  Q ++EA+HS ++ 
Sbjct: 76  -LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133

Query: 133 YIITSL-GLDE-GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEF-LQD 188
           YI+ ++   DE   +  +++E   +  +  +   QY + +            D EF L  
Sbjct: 134 YILDTICSPDERTRILYLWKEDEHLLKRNKFIGDQYNEFIKD----------DSEFNLMR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ N R   +G
Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L  +++ Y E P    W+SE  D  + K +FFE +V+ Y + + ++ D
Sbjct: 304 LGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
 gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
          Length = 328

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 154/317 (48%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   WE Y  A  + W   E+ +  D   W S   L D ER  I   L FFA+S+
Sbjct: 22  IFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHFISHVLAFFAASD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +    ++   E + +   Q   E +H+ T+  +I +   D  E   + N   
Sbjct: 79  GIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKDTTERQRMLNAIE 138

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+++ +         GT      F++ L  F  V EG++F   F  I  
Sbjct: 139 TIPCVKKKADWAIRWIE--------QGT------FIERLIAFAAV-EGIFFSGSFCSIFW 183

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +  +      ++  K  +++  T++ +A  
Sbjct: 184 LKKRGLMPGLTFSNELISRDEGLHRDFACLLYTK------YIVNKLPEEQVYTIIKDAVE 237

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NAP   QY++F+A+     + L+ ++  T NPF +M ++I L+
Sbjct: 238 IEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-NPFDFM-DLISLQ 295

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 296 GKTNFFEKRVGEYQKAG 312


>gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 352

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 155/336 (46%), Gaps = 42/336 (12%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DLA W S   L  +E+  I   L FFA+S+
Sbjct: 17  IFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHWDS---LKPEEKHFISHVLAFFAASD 73

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E+VHS  +  +I +   D  E   LFN   
Sbjct: 74  GIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYIRDLKEREHLFNAIY 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WALQ+              D+   F + L  F  V EG++F   FA I  
Sbjct: 134 TMPCVKRKADWALQWIN------------DSTSTFGERLVAFAAV-EGIFFSGSFASIYW 180

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI----------------DVINQ-IKIENPHLW 253
           L +   M G+    + I RDE LH  F                  D+I + + IE     
Sbjct: 181 LKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVKKPSEDRVKDIITKAVSIEQVGGS 240

Query: 254 TKEF---QQKSRTMLHEATLLEI-AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +     +     ++ +AT   +  +  E +P   +G+N    +QY++F+A+R    +GL
Sbjct: 241 YRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMNRCLMKQYIEFVADRLFADLGL 300

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ++   ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 301 AKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQR 334


>gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei]
 gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei]
          Length = 377

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PL++   W+ Y  A  + W   EV +  D+  W+  NG   DE+  I R L FFA+S+
Sbjct: 70  IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 126

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   DE E   LFN   
Sbjct: 127 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERLTLFNAIF 186

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   I  KA+WA+++              D    F + L  F  V EG++F   FA I  
Sbjct: 187 EFEFIKKKADWAMKWIS------------DKKASFAERLIAFAAV-EGIFFSGSFASIFW 233

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++        K  Q++   ++ +A  
Sbjct: 234 LKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLTQERIFEIIRDAVC 286

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N     QY++F+A+    ++G + L+   +NPF +M E I + 
Sbjct: 287 IEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYN-VKNPFDFM-ENISID 344

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 345 GKTNFFEKRVSEYQR 359


>gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 388

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 80  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 137 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 197 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + N H+  K  +++   ++ +A  
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  ++ T+ PF +M E+I L+
Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQ 354

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 355 GKTNFFEKRVGEYQKAG 371


>gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos
           saltator]
          Length = 344

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 28/332 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGLTD 76
           N D + +L    +   + P++Y   W+ Y  A  + W   EVP+   D   W+ K  L  
Sbjct: 14  NPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEEK--LNS 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER  I   L FFA+S+ +V  N++    + +   E R +   Q   E +HS  +  +I 
Sbjct: 72  DERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYSLLIE 131

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +T KANWAL +    S+                +  V +
Sbjct: 132 TYISDLKEKDFLFNAIETLPCVTKKANWALNWINHESAT-------------FPERIVAF 178

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   + I+ P   
Sbjct: 179 AAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHV-IQKPSF- 236

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++ +T++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G + ++
Sbjct: 237 -----ERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGFDKVY 291

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             +ENPF +M + I L+ + NFFE +V EY++
Sbjct: 292 N-SENPFSFM-DFISLEGKTNFFEKKVGEYKK 321


>gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
 gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
          Length = 310

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 36/327 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FFA SE
Sbjct: 9   LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E   LFN   
Sbjct: 66  GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA W +++  +             D+     L  F +V EG++F   F  I  
Sbjct: 126 NVPTVKRKAEWVMKWISS-------------DKTLAMRLIAFGLV-EGLFFAGSFCAIYY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267
             +   + G+A     I RDE LH +F       + Q K+          QQ+   +  E
Sbjct: 172 FRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  E +P   +G+NA    QY++  A+      G  P+F   ENPF +M  ++
Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYMR-LL 280

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           D++ + NFFE RVTEY+  Q  +L +D
Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
 gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
          Length = 321

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  IK  L FFA+S+
Sbjct: 14  IFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D  E  ++ + + 
Sbjct: 71  GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130

Query: 154 SITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +I     KA WA ++              D +  + + L  F  V EG++F   FA I  
Sbjct: 131 TIDCVKEKAKWAEKWIL------------DKESSYGERLVAFAAV-EGIFFSGAFASIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +  Q+ +  P+        +   ++ EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQL-LHPPN------PSRIINIIVEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E ++    +P   +G+N     QY++F+A+R   ++G   +FK +ENPF +M E I L+
Sbjct: 231 IEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SENPFDFM-ESISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV++YQ+
Sbjct: 289 GKTNFFEKRVSDYQK 303


>gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis]
          Length = 345

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 165/353 (46%), Gaps = 37/353 (10%)

Query: 7   LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57
           + P+ AG + +  D   +  NA  +  Q        L P++Y   W KY    +  W   
Sbjct: 1   MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R + 
Sbjct: 61  EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++    SS SF
Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SSASF 175

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                       Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH
Sbjct: 176 ------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLH 223

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F         + N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    Q
Sbjct: 224 TDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQ 277

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+  
Sbjct: 278 YIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAG 328


>gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper
           iridovirus]
          Length = 312

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  + W   EV +  D+  W  K  LT+ ER  +   L FFA ++ +V +N+V 
Sbjct: 14  WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71

Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159
              + L + PE R +   Q   E +H+  +  +I +L   E +  LF+   ++P + AKA
Sbjct: 72  NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA Q+      P  T             L  F  V EG+ F   FA I  L + + M G
Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   +  Q+         K  Q  +  ++ +A  +E A+  E 
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIISDAVDIETAFFREA 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   I ++ + NFFE R
Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYN-VGNPFDFMDN-ISIEGKTNFFERR 289

Query: 340 VTEYQQ 345
           V+EYQ+
Sbjct: 290 VSEYQR 295


>gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
 gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
          Length = 342

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y W ++ +L+    HW+P E+P+ +D+  W+    LT  E+ ++ +   FF  ++  
Sbjct: 32  PFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQADVE 89

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152
           V NN  L  Y  +  P E    +   A  E +H   + +++ ++G+ E E   F  Y+E+
Sbjct: 90  V-NNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESEYSAFLKYKEM 148

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y Q     +F    K   +E  + + VF    EG+  +  FA +L+  
Sbjct: 149 KD-------KYDYMQ-----NFNVNNK---REIAKTVAVFSAFTEGLQLFASFAILLNFP 193

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTML-HE 267
           R NKM G+ +   + +RDE+LH N  I + N    ENP L      KE     RT++ HE
Sbjct: 194 RFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKKEITDACRTIVEHE 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +++A+  E  P    GL A   + Y+++IANRR  Q+ L+ ++   ENP  W+  ++
Sbjct: 254 DAFIDLAF--EMGP--IEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKENPLEWIDTML 309

Query: 328 DLKKEKNFFETRVTEYQQGA 347
           +  +  NFFE R TEY + +
Sbjct: 310 NGVEHMNFFEGRATEYSKAS 329


>gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 352

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 23/348 (6%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K   
Sbjct: 18  EGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYR 74

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+    R L F    +S+   N+   +  +++  E    L  Q ++EA+HS ++ 
Sbjct: 75  NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133

Query: 133 YIITSL-GLDE-GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEF-LQD 188
           YI+ ++   DE   +  +++E   +  +  +   QY + +            D EF L  
Sbjct: 134 YILDTICSPDERTRILYLWKEDDHLLKRNKFIGDQYNEFIKD----------DSEFNLMR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ N R   +G
Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L  +++ Y + P    W+SE  D  + K +FFE +V+ Y + + ++ D
Sbjct: 304 LGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV]
 gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura
           NPV]
          Length = 333

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 28/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N+ D+ +L        + P++Y   W  Y  A  + W   EV +  DL+ W S   L + 
Sbjct: 8   NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDWDS---LKES 64

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +
Sbjct: 65  ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P+I  KA W++++             K A   F + L  F  
Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKW------------IKSATATFAERLIAFAA 172

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   FA I  + +   M G+    + I RDE LH +F         +   H+  
Sbjct: 173 V-EGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFAC-------LMYSHIVN 224

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  + +   ++ EA  +E  +  E +P   +G+N     +Y++F+A+R   ++  E  + 
Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            T+NPF +M+ +I L+ + NFFE +V+EYQ+
Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQK 313


>gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 388

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 37/356 (10%)

Query: 4   NTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHW 54
           N  + P+ AG + +  D      NA  +  Q        L P++Y   W KY    +  W
Sbjct: 41  NLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIW 100

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
              E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R
Sbjct: 101 TVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEAR 157

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++    SS
Sbjct: 158 AFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SS 215

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            SF            Q+  + +   EG++F   F  +  L +   M G+    + I RDE
Sbjct: 216 ASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDE 263

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F         + N H+  K  +++   ++ +A  +E  +  + +P   +G+NA  
Sbjct: 264 GLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAEL 317

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+  
Sbjct: 318 MAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 371


>gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 380

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W  Y  A  + W   E+ +  D+  W +K  L  DE+  IK  L FFA+S+
Sbjct: 60  LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWDNK--LNADEKHFIKHVLAFFAASD 117

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +   E R +   Q   E +HS  +  +I +   +  E   LF+   
Sbjct: 118 GIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYVREPTERAHLFDAID 177

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA+WAL            T   D    F + L  F  V EG++F   FA I  
Sbjct: 178 TIPCIRKKADWAL------------TWISDKKSTFGERLIAFAAV-EGIFFSGSFASIFW 224

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  +      + ++ +A  
Sbjct: 225 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFT-------HLERRPHPDTVQAIIAQAVE 277

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T NPF +M E+I L 
Sbjct: 278 IEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT-NPFDFM-EMISLS 335

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y +  
Sbjct: 336 GKTNFFEKRVSDYAKAG 352


>gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus]
 gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus]
          Length = 325

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  D   W     L+++E+  IK  L FFA+S+
Sbjct: 18  VFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDWLK---LSENEKKFIKHILAFFAASD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +  LD  E   LFN   
Sbjct: 75  GIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KANWA ++ ++ +S   T G +           + +   EG++F   FA I  
Sbjct: 135 NMNCVKQKANWARKWIESKNS---TYGER----------LIAFAAVEGIFFSGSFAAIFW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE LH +F   +   +   NP L     +   R ++ EA  
Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFACMMFKHLS--NPPL-----ENVIRDIVIEAVD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E MP   +G+N    +QY++F+A+R   ++G +  +  ++NPF +M E I L+
Sbjct: 235 IEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY-CSKNPFDFM-ENISLE 292

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 293 GKTNFFEKRVSEYQK 307


>gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple
           nucleopolyhedrovirus]
          Length = 313

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   W  Y  A +  W   EV M  D   ++SK  L DDER  IK  L FFA+++
Sbjct: 8   LKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFESK--LNDDERYFIKHVLAFFAAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  + R++   E + +   Q   E VH+  +  +I  L  DE E   L N + 
Sbjct: 66  SIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLNAFE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  KA WA+++ ++             D   L +  V + + EG++F   FA I  
Sbjct: 126 HVPCVRKKAQWAMKWIES-------------DTATLAERMVAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS-RTMLHEAT 269
           +     M G+    + I RDE LH +F   +  + ++      T++    +  +M  EA 
Sbjct: 173 IKTKGIMPGLTFSNELISRDEGLHTDFAC-LYYKTRV------TEKLDSDTILSMFKEAV 225

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +    +P   +G+NA S  +Y++F+A+R   Q+G +P +    NPF +M+  I L
Sbjct: 226 AIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLG-QPKYFNARNPFEFMNN-ISL 283

Query: 330 KKEKNFFETRVTEYQQ 345
           + + NFFE RV EY++
Sbjct: 284 EGKTNFFEKRVGEYKR 299


>gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
           sapiens]
 gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 3 [Pan troglodytes]
 gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form
           [Homo sapiens]
 gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo
           sapiens]
          Length = 299

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R + 
Sbjct: 16  EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++     S   
Sbjct: 73  GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T G +           V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 130 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 179

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   +         +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +Q
Sbjct: 180 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 232

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 233 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 283


>gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
 gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
          Length = 323

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W  Y  A  + W   EV +  D+A W+    L+ DE+  I   L FFA+S+
Sbjct: 16  IYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWER---LSADEKKFISTVLAFFAASD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS T+  +I +   DE E   LF+  +
Sbjct: 73  GIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKDERERLVLFDAIK 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
               I  KA+WAL++   ++SP            F   L  F  V EG++F   FA I  
Sbjct: 133 NFEFIKKKADWALRWISDMTSP------------FAHRLVAFAAV-EGIFFSGSFASIFW 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   + G+    + I RDE LH +F   +  +I ++ P       ++    ++ EA  
Sbjct: 180 LKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKI-VDKPS------REIVCEIVDEAVT 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E+ +  + +P   +G+N     QY++++A+    ++G E L+ +T NPF +M E I + 
Sbjct: 233 IELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTINPFDFM-ENISID 290

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV+EYQ+  
Sbjct: 291 GKTNFFEKRVSEYQRSG 307


>gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 387

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   W  Y  A  ++W   E+    D+  W   NGL+D+E+  IK  L FFA S+
Sbjct: 85  VFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFIKYILAFFAGSD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150
            +V  NI       +   E R +   QA  E VH  T+  +I        ++ +LF   +
Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSSTEKNQLFEAIQ 201

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D  + F + L  F  V EG++F   F  I  
Sbjct: 202 TIPCIERKAKWAMKWF-------------DKKRPFAERLLAFACV-EGIFFSGSFCAIYW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   + G+    + I RDE +H  F +++ N +K        K   +    ++ +A  
Sbjct: 248 LKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSGEIIEEIIRDAVT 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++A+R   Q+G + ++  T+NPF +M E I L 
Sbjct: 301 IEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNPFDFM-ENISLD 358

Query: 331 KEKNFFETRVTEYQQGAE 348
            + NFFE RV +Y +  E
Sbjct: 359 GKTNFFEKRVGDYGKMDE 376


>gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 2 [Callithrix jacchus]
          Length = 299

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 144/293 (49%), Gaps = 28/293 (9%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R + 
Sbjct: 16  EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++     S   
Sbjct: 73  GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T G +           V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 130 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 179

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   +         +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +Q
Sbjct: 180 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 232

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R   ++G    F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 233 YIEFVADRLLVELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 283


>gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  + ++ W   E+ +  DLA W+  N   + E+  IK
Sbjct: 19  LLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +   D  
Sbjct: 76  HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   + +    +P I  KANWA+++ ++ SS             F + L  F  V EG++
Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +F       +  EN ++  K  +++
Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPKER 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++  A  +E  +  + +P   +G+NA     Y++F+A+R    +G E  +  ++NPF
Sbjct: 236 IREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M E+I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320


>gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens]
          Length = 285

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R + 
Sbjct: 2   EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 58

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++     S   
Sbjct: 59  GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 115

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T G +           V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 116 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 165

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   +         +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +Q
Sbjct: 166 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 218

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 219 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 269


>gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
 gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
          Length = 325

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  IK  L FFA+++
Sbjct: 15  LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D+ E   LF   R
Sbjct: 72  GIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI  KA+WAL++                ++ F + L  F VV EG++F   F  I  
Sbjct: 132 TIQSIKNKADWALKWMNN-------------ERSFAERLIAFAVV-EGIFFSGAFCAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         +   H+  K   +    ++  A  
Sbjct: 178 LKKRAIMPGLTFSNELISRDEGLHTDFA------CMLYRNHIIHKLPYETVLDIITNAVE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    NPF WM E+I L+
Sbjct: 232 LERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-NPFEWM-ELISLE 289

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 290 GKTNFFEKRVGEYQKAG 306


>gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
 gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
          Length = 397

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 150/323 (46%), Gaps = 29/323 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N +TD ER  +   L FFA+S+
Sbjct: 83  LFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD--NRMTDPERHFVSHVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149
            +V  N+V      +   E R +   Q   E +HS T+  +I +  + E E    LFN  
Sbjct: 141 GIVNENLVERFSAEVQATEARCFYGFQIMMENIHSETYSLLIDTY-IREPERRDFLFNAI 199

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             VP +  KA+WAL++              D    F + L  F  V EG++F   FA I 
Sbjct: 200 ETVPVVKQKADWALRWIS------------DHRASFSERLVAFAAV-EGIFFSGSFASIF 246

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G++   + I RDE LH +F   + +       HL  +        ++ EA 
Sbjct: 247 WLKKRGLMPGLSFSNELISRDEGLHTDFACLLFS-------HLKKRAHPDTVNRIITEAV 299

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+NA    QY++F+A+R    +G  P    + NPF +M E I L
Sbjct: 300 DIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVALG-NPKHYNSTNPFDFM-ENISL 357

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           + + NFFE RV +Y +    + D
Sbjct: 358 QGKSNFFERRVGDYAKAGVARAD 380


>gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83]
 gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83]
          Length = 321

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  IK  L FFA+S+
Sbjct: 14  IFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D  E   L     
Sbjct: 71  GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  KA WA ++              D +  + + L  F  V EG++F   FA I  
Sbjct: 131 TIDCIKEKAKWAEKWIL------------DKESTYGERLVAFAAV-EGIFFSGAFASIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +  Q+ +  P         +   ++ EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQL-LYPPS------TSRIINIIVEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E ++  + +P   +G+N     QY++F+A+R   ++G   +FK +ENPF +M E I L+
Sbjct: 231 IEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SENPFDFM-ESISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV++YQ+
Sbjct: 289 GKTNFFEKRVSDYQK 303


>gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
 gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
          Length = 362

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W  Y     + W   E+ +  DL  W+ +  + D+ER  I   L FFA+S+
Sbjct: 55  LFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER--MNDNERHFISHVLAFFAASD 112

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +  PE R +   Q   E VHS T+  +I +   D  +   L N   
Sbjct: 113 GIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYSLLIDTYIRDPAQRTFLLNAVE 172

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++              D    F   L  F  V EG++F   FA I  
Sbjct: 173 TIPCVRKKAEWALRWIA------------DRRSSFAIRLVAFSAV-EGIFFSGSFASIFW 219

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE +H +F   ++  ++   PH    E       ++ EA  
Sbjct: 220 LKKRGLMPGLTFSNELITRDEGMHTDFACLLLTHMR-RRPHPEVIEM------IIKEAVA 272

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M ++I L+
Sbjct: 273 IEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVALGNDKVWNAT-NPFDFM-DMISLQ 330

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV++Y+  A
Sbjct: 331 GKTNFFEKRVSDYKIAA 347


>gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi]
          Length = 390

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W S   L   ER  I   L FFA+S+
Sbjct: 83  IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDS---LKPSERHFISHVLAFFAASD 139

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDFLFNAIE 199

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+ +   +SS     G +           V +   EG++F   FA I  
Sbjct: 200 TLPCVKRKADWAMNW---ISSKKANYGER----------IVAFAAVEGIFFSGSFAAIFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  +++   ++ +A +
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------YLVQKPSRKRVTDIIRDAVM 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G E ++  T+NPF +M E I L+
Sbjct: 300 IEQEFLTKALPVDMLGMNCELMSQYIEFVADRLLVELGCEKVYN-TKNPFSFM-EFISLE 357

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 358 GKTNFFEKKVGEYQK 372


>gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 99B1]
          Length = 325

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  IK  L FFA+++
Sbjct: 15  LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D+ E   LF   R
Sbjct: 72  GVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI  KA+WAL++                ++ F + L  F VV EG++F   F  I  
Sbjct: 132 TIQSIKNKADWALKWMNN-------------ERSFAERLIAFAVV-EGIFFSGAFCAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         +   H+  K   +    ++  A  
Sbjct: 178 LKKRAIMPGLTFSNELISRDEGLHTDFA------CMLYRNHIIHKLPYETVLDIITNAVE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    NPF WM E+I L+
Sbjct: 232 LERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-NPFEWM-ELISLE 289

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 290 GKTNFFEKRVGEYQKAG 306


>gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
 gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
          Length = 326

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 39/325 (12%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   WE Y  A  + W   E+ +  D+  WKS   L D ER  I   L FFA+S+
Sbjct: 16  LFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGERHFISHVLAFFAASD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E + +   Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 73  GIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDPSERDKLFNAIE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA+WAL++                D    Q+  + +   EG++F   F  I  
Sbjct: 133 HIDCVKKKADWALRWI---------------DNGNFQERLIAFAAVEGIFFSGSFCSIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTML 265
           L +   M G+    + I RDE LH +F             HL+TK       ++  R ++
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFAC-----------HLYTKHVVNPLPKETVREII 226

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  +E  +  + +P   +G+N+    QY++F+A+R   ++  E ++  T NPF +M +
Sbjct: 227 IDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWNST-NPFDFM-D 284

Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
           +I L+ + NFFE RV +YQ+   +K
Sbjct: 285 MISLQGKTNFFEKRVGDYQKAGVMK 309


>gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body
           iridovirus]
          Length = 312

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  + W   EV +  D+  W  K  LT+ ER  +   L FFA ++ +V +N+V 
Sbjct: 14  WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71

Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159
              + L + PE R +   +   E +H+  +  +I +L   E +  LF+   ++P + AKA
Sbjct: 72  NFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA Q+      P  T             L  F  V EG+ F   FA I  L + + M G
Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   +  Q+         K  Q+ +  ++ +A  +E A+  E 
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPSQEDAHQIISDAVDIETAFFREA 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   I ++ + NFFE R
Sbjct: 232 LKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYN-VANPFDFMDN-ISIEGKTNFFERR 289

Query: 340 VTEYQQ 345
           V+EYQ+
Sbjct: 290 VSEYQR 295


>gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 323

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 30/331 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   +LP+ Y   W+ Y     + W   E+ +  DL  W +   L D ER
Sbjct: 4   ENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LNDGER 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 61  HFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLIDTYV 120

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+    V  +  KA WAL++ +  S              F + L  F  V 
Sbjct: 121 KDPVEKDRLFHAIETVECVKKKAEWALRWIENGS--------------FAERLVAFAAV- 165

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH  F   + + ++ + P      
Sbjct: 166 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP------ 219

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++ + ++ +A  +E  +  + +P   +G+NA   +QY++F+A+R   ++G    +  T
Sbjct: 220 -KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYYNAT 278

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            NPF +M E+I L+ + NFFE RV +YQ+  
Sbjct: 279 -NPFDFM-ELISLQGKTNFFEKRVGDYQKSG 307


>gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +  Y  A  + W   EV +  D+  W   N L  DE+  I   L FFA+S+
Sbjct: 27  LFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW---NILNSDEKRFISHVLAFFAASD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  N+V      +   E R +   Q   E +HS  +  +I +   D   + ++F+   
Sbjct: 84  GIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSEMYSLLIDTYISDFQEKDKMFSAIE 143

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+++ ++  S             F + L  F  V EG++F   FA I  
Sbjct: 144 TMPFVKKKADWAIRWIESTES------------HFSERLVAFAAV-EGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + +K + P       + +   ++ EA +
Sbjct: 191 LKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLKKKLP-------RDRILQIITEAVV 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LE  +  E +P   +G+N     QY++F+A+R   ++G +  + Y +NPF +M E I L 
Sbjct: 244 LEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIELGYDKHY-YAQNPFDFM-ENISLS 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQR 316


>gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei]
 gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
           bathyomarinum JL354]
          Length = 354

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D   W  K  L++ ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ E   +
Sbjct: 70  VQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D D++  + L  F    EGM  +  FA +++  R N
Sbjct: 129 KDKHDYLQQFG------------VDTDEDIARTLAAFGGFTEGMQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + ++  +     +TK  ++    +  ++  LE  +
Sbjct: 177 KMKGMGQIVSWSVRDESLHCEGIIRLFHEF-VRERDCYTKAVKEDIIDICQKSVRLEDNF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+ A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +  N
Sbjct: 236 IDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY +GA
Sbjct: 296 FFEQRATEYSKGA 308


>gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus]
          Length = 312

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  + W   EV +  D+  W  K  LT+ ER  +   L FFA ++ +V +N+V 
Sbjct: 14  WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71

Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159
              + L + PE R +   Q   + +H+  +  +I +L   E +  LF+   ++P + AKA
Sbjct: 72  NFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA Q+      P  T             L  F  V EG+ F   FA I  L + + M G
Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   +  Q+         K  Q  +  ++ +A  +E A+  E 
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIISDAVDIETAFFREA 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   I ++ + NFFE R
Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYN-VGNPFDFMDN-ISIEGKTNFFERR 289

Query: 340 VTEYQQ 345
           V+EYQ+
Sbjct: 290 VSEYQR 295


>gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 339

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 162/324 (50%), Gaps = 20/324 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   W+ Y +A +  W   EV +  D   W++K  L +DER  +K  L FFAS++
Sbjct: 10  ILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQNK--LNEDERHFLKHILAFFASAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  +   ++  E R +  +Q F E VHS  +  +I     DE E   L N + 
Sbjct: 68  SIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLNAFN 127

Query: 151 EVPSITAKANWALQYTQT------LSSPSFTTGTKDADQEFLQDLFVFYVVF---EGMWF 201
           ++  +  KA WAL++T++      L +P+     +   ++   +L V  V F   EG++F
Sbjct: 128 DIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEGVFF 187

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  +     M G+    + I RDE LH NF     N+   E+  L +    ++ 
Sbjct: 188 SGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEHDKLSS----ERI 243

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             M  EA  +E  +    +P   +G+N  S  +Y++F+A+R    +  +P      NPF 
Sbjct: 244 LDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLN-QPKHFMASNPFN 302

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345
           +M+  I ++ + NFFE RV EY++
Sbjct: 303 FMTN-ISMEGKTNFFERRVGEYRR 325


>gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 380

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 147/321 (45%), Gaps = 36/321 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++    W+ Y  A    W   E+ +  D   W+   GLTDDER  +K  L FFA+S+
Sbjct: 73  LFPIQDNEVWQMYKKAEACFWTAEELDLAHDHKDWE---GLTDDERHFVKHVLAFFAASD 129

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 130 GIVNENLASNFSSEIQLSEARCFYGFQIAIENIHSEVYSLLIDTYVKDAAEKTHLFNAME 189

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  KA WAL++      P   +        + + L  F  V EG++F   F  +  
Sbjct: 190 TVPCVRRKARWALRWCD----PKLAS--------YAERLVAFAAV-EGIFFSGSFCAVFW 236

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI----DVINQIKIENPHLWTKEFQQKSRTMLH 266
           L +   M G+    + I RDE LH +F       ++N++ +E           +   ++ 
Sbjct: 237 LKKRGLMPGLCFSNELISRDEGLHTDFACLLFRKLVNKLPVE-----------RVAEIIC 285

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E  +    +P   +G+N+    QY++F A+R   ++G E  +  T NPF WM E+
Sbjct: 286 DAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRLLMELGCEKKYNST-NPFDWM-EM 343

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           I L+ + NFFE RV EY +  
Sbjct: 344 ISLQGKTNFFEKRVGEYSKSG 364


>gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 351

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 20/325 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L AR   N   P +Y WA+E +      HWMP EVP+ +D   W  K  +++ ER ++ 
Sbjct: 3   LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--ISEHERNLLT 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N       R     E +  L   +  E VH   + +++ ++G+ E 
Sbjct: 58  QIFRFFTQADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E + M+ E   + AK +    Y QT           + D++  + L +F    EG+  + 
Sbjct: 118 E-YGMFLEYEELKAKHD----YLQTFGV--------ETDEDIARTLAMFGGFTEGLQLFA 164

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +++  R NKM G+ +   + +RDESLH   GI  +    ++     TK  ++    
Sbjct: 165 SFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCE-GITRLFHAFVKERGCLTKAVKEDIID 223

Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
              +   LE A+      +G V G++A   ++Y+++IA+ R  Q+GL  ++   ++P PW
Sbjct: 224 CCQKTVRLEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPW 283

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347
           ++ +++  +  NFFETR TEY + A
Sbjct: 284 LAPLLNGVEHANFFETRATEYSKAA 308


>gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens]
          Length = 393

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 27/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K    W  Y  A  + W   EV +  D   W+    L + ER  + R L FFA+S+
Sbjct: 84  LFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE-- 151
            +V  N+V    + ++ PE R +   Q   E VH   +  ++ +   D GE   + R   
Sbjct: 141 GIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREALTRAHD 200

Query: 152 -VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P + AKA+WA+++T +             D  +   L  F  V EG++F   F  I  
Sbjct: 201 LMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGSFCAIFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   + G+    + I RDE LH +F   + +++     HL   +   ++  ++ EA  
Sbjct: 247 LRKRGILPGLGFANELISRDEGLHCDFACALYSRLP---GHLRLSD--AEATAIISEAVD 301

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  + +P   VG+NA     Y++F+A+R    +G  P      NPF +M E+I ++
Sbjct: 302 TEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLG-HPKIYGAANPFDFM-ELISMQ 359

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE RV EYQ+ 
Sbjct: 360 GKTNFFEKRVAEYQKA 375


>gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 382

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 150/331 (45%), Gaps = 37/331 (11%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   L P+K+   WE Y  A  + W   EV +  D   W++   L ++E+  + 
Sbjct: 65  LLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHFVS 121

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFASS+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  
Sbjct: 122 HVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPK 181

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + ELF     VP++  KA+WAL +  +             D  F + L  F  V EG++
Sbjct: 182 KKSELFRAIHTVPTVAMKADWALHWIGS-------------DASFPERLVGFACV-EGIF 227

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +     ++NP          
Sbjct: 228 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGM--LQNP---------L 276

Query: 261 SRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           S   LH    +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G   LF   
Sbjct: 277 SEATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV 336

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            NPF WM E+I L+ + NFFE RV +YQ+  
Sbjct: 337 -NPFDWM-ELISLQGKANFFEHRVDQYQKAG 365


>gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris
           MCS10]
 gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10]
          Length = 345

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D   W +K  L D ER ++ +   FF  S+  
Sbjct: 20  PFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWATK--LNDGERNLLTQIFRFFTQSDVE 77

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F+ + E  ++
Sbjct: 78  VNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQAM 136

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  ++           G +D + + L+ + +F    EG+  +  FA +++  R N
Sbjct: 137 ADKHDYMQRF-----------GVED-EADILRTVAMFGAFTEGLQLFASFAMLMNFPRFN 184

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   L T+E +            LE  +
Sbjct: 185 KMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEETGAL-TQEVKDDITECCRTVVGLEDKF 243

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     + Y+++IA+ R  Q+GL  ++   E+P PW+SE+++  +  N
Sbjct: 244 IDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEHAN 303

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY +GA
Sbjct: 304 FFEARATEYSKGA 316


>gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor
           alocis ATCC 35896]
          Length = 348

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 168/344 (48%), Gaps = 21/344 (6%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L 
Sbjct: 17  IELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEINLTQDI---KDYRNLE 73

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +E+    + L F    +SL   N+   +   ++  E    L  QA++EA+HS ++ YI+
Sbjct: 74  IEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTIQAYQEAIHSQSYGYIL 132

Query: 136 TSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S+   E   E+   +++ P + A+  +   QY     + +     K     +       
Sbjct: 133 DSICSPEERTEILYQWKDDPFLLARNKFIGDQYNDFYYNRTKYNLVKTVIANY------- 185

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++K E P L
Sbjct: 186 --ILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFRSIILELKKEEPEL 243

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T E  +  R M+ +    EI +A+  +     GL     E Y++++ N RC  +G EP+
Sbjct: 244 FTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYLGNLRCRGLGFEPI 303

Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           ++ Y   P    W+SE  D    K +FFE +V+ Y + + ++ D
Sbjct: 304 YEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347


>gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 347

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 176/346 (50%), Gaps = 23/346 (6%)

Query: 12  AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           AG+  V +  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+  +++
Sbjct: 13  AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS +
Sbjct: 71  ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126

Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQ 187
           + Y++ ++    +  E+   +++ P + ++  +    Y +     S         + F++
Sbjct: 127 YSYMLDTICEPQERNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSL--------EAFVR 178

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +   Y++ EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++ 
Sbjct: 179 TMIANYIL-EGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELRK 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  +
Sbjct: 238 ELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKNL 297

Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           GL P+++  E       W+S+  +    K +FFE + T Y + + L
Sbjct: 298 GLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343


>gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
 gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
          Length = 349

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 29/316 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K+   WE Y +   + W   E+ +  D+  W   N L D ER  I   L FFA+S+
Sbjct: 20  LFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHFISHVLAFFAASD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +     +   E + +   Q   E +HS T+  +I +   D  E   L N   
Sbjct: 77  GIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKDPVEKDRLLNAID 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++    S              F + L  F VV EG++F   F  I  
Sbjct: 137 TIPCVQKKAEWALRWIDNGS--------------FAERLIAFAVV-EGIFFSGSFCSIYW 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         +   H+  K  + +   ++  A  
Sbjct: 182 LKKRGMMPGLTFSNELISRDEGLHRDFA------CMLYTDHIVNKLPESQIYDIIRNAVE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA   +QY+ F+A+     +GL  ++    NPF +M ++I L+
Sbjct: 236 IEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYN-VANPFDFM-DMISLQ 293

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE RV EYQ+G
Sbjct: 294 GKTNFFEKRVGEYQRG 309


>gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3]
 gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3]
 gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3]
          Length = 335

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 27/305 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  ++W   E+ +  D A W+S   L+++E+  +K  L FFA+S+ +V  N+  
Sbjct: 35  WSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFFLKNILAFFAASDGIVNENLAT 91

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              + +   E R +   Q   E VHS  +  ++ +  LD  E   LF     +P I  KA
Sbjct: 92  RFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILDPVERNGLFKAMETMPCIKKKA 151

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +WAL +   + SP  T G +           V +   EG++F   FA I  L +   M G
Sbjct: 152 DWALNW---IESPDATFGER----------LVAFTAVEGIFFSGAFASIFWLKQKVSMPG 198

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + +       HL  K  +++ R ++ EA  +E  +  ++
Sbjct: 199 LTFSNELISRDEGLHRDFACLLFSS------HLRHKPSKERVRAIITEAVEIEKEFLTQS 252

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     +Y+Q++A+    Q+GL  L+  T  PF +M E I L+ + NFFE R
Sbjct: 253 LPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPCPFDFM-ENISLEGKTNFFEKR 310

Query: 340 VTEYQ 344
           V +YQ
Sbjct: 311 VADYQ 315


>gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 388

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 80  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 197 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + N H+  K  +++   ++ +A  
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T+ PF +M E+I L+
Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQ 354

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 355 GKTNFFEKKVGEYQKAG 371


>gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
          Length = 392

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 23/314 (7%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   WE Y     + W   E+ +  D+  W+S N    +E+  IK  L FFA+S+
Sbjct: 86  ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWESLNS---NEKHFIKYVLAFFAASD 142

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+       +  PE R +   Q   E +HS T+  +I     DE E   ++  V 
Sbjct: 143 GIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLIDQYIRDEKEKMELFDAVH 202

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++ A A  A      ++           ++    +  V +   EG+ F   F  I  L +
Sbjct: 203 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCSIFWLKK 251

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G+    + I RDE LH +F   + +Q+K + P        +  + M+ EA  +E 
Sbjct: 252 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKNKLP-------DKVVQDMVREAVTVER 304

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           A+  E +P   +G+N  S  QY++F+A+R    +G+  +F +  NPF WM E+I L+ + 
Sbjct: 305 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 362

Query: 334 NFFETRVTEYQQGA 347
           NFFE RV EYQ+  
Sbjct: 363 NFFEKRVGEYQKAG 376


>gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 340

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S  +
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQS 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 328

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 30/328 (9%)

Query: 17  VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + VD  + L  R + N+ +  P+ +   WE Y       W   E+  + D   W+    L
Sbjct: 26  MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 82

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +
Sbjct: 83  TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 142

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I  L  DE +   LFN  +  P+I  K  WA+ + Q+ +               L +L V
Sbjct: 143 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 188

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P 
Sbjct: 189 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 248

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE 
Sbjct: 249 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 302

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETR 339
            +  T NPFP+M   I L+ + NFFE R
Sbjct: 303 HYNVT-NPFPFMDN-ISLENKTNFFEKR 328


>gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
 gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
          Length = 391

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W+    L   E+  I   L FFA+S+
Sbjct: 84  IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWEK---LKSGEKHFISHVLAFFAASD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +   D  E   LFN   
Sbjct: 141 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKEREYLFNAIE 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA+ +   +SS     G +           V +   EG++F   FA I  
Sbjct: 201 TLPCVKKKADWAMNW---ISSKHANFGER----------VVAFAAVEGIFFSGSFASIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  +++   ++ EA +
Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFR-------YLVQKPSKERVLEIIREAVV 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N     QY++F+A+R   ++G E ++  T+NPF +M E I L+
Sbjct: 301 IEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGNEKIYN-TKNPFSFM-EFISLE 358

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 359 GKTNFFEKKVGEYQK 373


>gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A +N W    + + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+ + +V  N V      +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
 gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
          Length = 347

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 170/345 (49%), Gaps = 21/345 (6%)

Query: 12  AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +G+ +VN   +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+  ++ 
Sbjct: 13  SGDTQVN--KRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIKDYRK 70

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAVHS +
Sbjct: 71  ---LPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVHSQS 126

Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           + Y++ ++    +  ++   ++E   +  +     ++   L    +    K  D   L  
Sbjct: 127 YSYMLDTICEPQERNDVLYQWKEDQHLLKRN----EFIGNL----YNEFQKKKDAGVLVK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF    +LGR N+M G  ++ +YI RDE+ HL    +++ ++K E
Sbjct: 179 TLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+   ++ R M+ E    EI++ H  +     GLN      Y+Q++ N RC  +G
Sbjct: 239 EPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTNLG 298

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
             P+++ + + P    W+S+  +    K +FFE R T Y + + L
Sbjct: 299 FAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343


>gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
 gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
          Length = 346

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 20/325 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L AR   N   P +Y WA+E +      HWMP EVP+ +D   W     LT+ ER ++ 
Sbjct: 3   LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWA--QNLTEHERNLLT 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V +       R     E +  L   +  E VH   + +++ ++G+ E 
Sbjct: 58  QIFRFFTQADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E ++ + +   +  K N+  Q++             D D++  + L +F    EG+  + 
Sbjct: 118 E-YSAFLDYEEMADKHNYMHQFS------------VDTDEDIARTLAMFGGFTEGLQLFA 164

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +++  R NKM G+ +   + +RDE+LH   GI  +     E     TK  ++    
Sbjct: 165 SFAMLMNFPRFNKMKGMGQIVSWSVRDETLHCE-GIIKMFHTFCEERDCLTKAVKEDIID 223

Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           +  +   LE A+       G V G+ A   ++Y+++IA+ R  Q+ L+P++   E+P PW
Sbjct: 224 ICQKTVRLEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPW 283

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347
           +S +++  +  NFFE R TEY +GA
Sbjct: 284 LSPLLNGVEHANFFEARATEYSKGA 308


>gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 388

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 80  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSD 136

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 197 TIPCIQRKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + N H+  K  +++   ++ +A  
Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T+ PF +M E+I L+
Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQ 354

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 355 GKTNFFEKKVGEYQKAG 371


>gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 392

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 165/358 (46%), Gaps = 37/358 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52
           A +  + P+  G + + VD      NA  +  Q        L P++Y   W KY    + 
Sbjct: 43  AEDLVMKPVAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 103 IWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++    
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIG-- 217

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           SS SF            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 218 SSASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 266 DEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               QY++F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+  
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 375


>gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis
           alaskensis RB2256]
 gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 354

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HW+P EVP+ +D   W  K  ++D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADIE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E + M+ E   +
Sbjct: 70  VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFLEYDEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AK ++  Q+              + D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 RAKHDYMQQFGV------------ETDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   L TK  ++       +   LE A+
Sbjct: 177 KMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKERGCL-TKAVKEDIIDTCQKTVRLEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                 +G V G+     ++Y+++IA+ R  Q+G +P++   E+P PW++ +++  +  N
Sbjct: 236 IDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY +GA
Sbjct: 296 FFETRATEYSKGA 308


>gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain [Theileria annulata]
 gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain, putative [Theileria annulata]
          Length = 322

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 14/303 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+ Y   WE Y  A  + W   E+    D   W   + L  DER  I 
Sbjct: 19  ILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHW---HKLNKDERHFIT 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   DE 
Sbjct: 76  NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     + ++  KANWA ++    +S +    +   ++       V Y   EG+ 
Sbjct: 136 EKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVEGIL 195

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P       ++ 
Sbjct: 196 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP-------EEA 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ EA ++E +Y  +++P   +G+N+    QY++F+A+R    +G+ P++  T NPF
Sbjct: 249 VQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT-NPF 307

Query: 321 PWM 323
            WM
Sbjct: 308 DWM 310


>gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
          Length = 346

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 164/348 (47%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +   +V ++RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVH
Sbjct: 66  -KDYPMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQTFQEAVH 123

Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   +   E+   ++    + A+         T     +    KD     
Sbjct: 124 SQSYSYMLDTICEPQTRNEVLYQWKNDEHLLAR--------NTFIGNLYNEFQKDKSPFT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                V   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T +     R M+ E    EIA+ H  +     GL       Y+Q++ N RC 
Sbjct: 236 KNEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCM 295

Query: 306 QIGLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G EP+++  E       W+S+  +    K +FFE R T Y + + L
Sbjct: 296 SLGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343


>gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 340

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 354

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 46  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSD 102

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 103 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 162

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 163 TIPCIQRKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 208

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + N H+  K  +++   ++ +A  
Sbjct: 209 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 262

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T+ PF +M E+I L+
Sbjct: 263 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQ 320

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 321 GKTNFFEKKVGEYQKAG 337


>gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 392

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 84  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 141 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F         + N H+  K  +++   ++ +A  
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T+ PF +M E+I L+
Sbjct: 301 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQ 358

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 359 GKTNFFEKKVGEYQKAG 375


>gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 361

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y     + W   EV ++ DL  W     LTDDER  I   L FFA+S+
Sbjct: 51  IFPIIYDDIWAMYKKQEASFWNVEEVNLKSDLEDWMK---LTDDERHFISHVLAFFAASD 107

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 108 GIVNENLVERFSQEVQVTEARCFYGFQIMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIE 167

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++              D+   F + L  F  V EG++F   FA +  
Sbjct: 168 TMPCVKKKADWALKW------------ISDSKATFGERLVAFAAV-EGIFFSGSFAALFW 214

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  Q     ++ EA  
Sbjct: 215 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HLEQKPPQAVITHIICEAVT 267

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   VG++      Y++F+A+R  +++G   +++ + NPFP+M ++I  +
Sbjct: 268 IEQDFLTNALPVRMVGMSCEKMAVYIEFVADRLLNELGCPTVYR-SSNPFPFM-DLISQQ 325

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV +YQ+ +
Sbjct: 326 GKTNFFEKRVGDYQKAS 342


>gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 347

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +K    L+
Sbjct: 16  TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + ER    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 73  EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 131

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  ++   ++  P +       L+  Q +        T    + F++ L   Y
Sbjct: 132 DTICEPQERNDILYQWKNDPHL-------LERNQFIGDLYNDFQTNKNTETFVKTLVANY 184

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K E P L+
Sbjct: 185 IL-EGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELKKEEPSLF 243

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +     R M+ +    EI + H  +     GL     E+Y++++ N RC  +G EP++
Sbjct: 244 HPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQNLGFEPIY 303

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
             +E       W+S+  +    K +FFE + T Y + + L
Sbjct: 304 PGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343


>gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
 gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
          Length = 424

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 29/323 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W+ Y  A  + W   E+ +  DL  W +K  L D+ER  I   L FFA+S+
Sbjct: 106 LFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNK--LNDNERHFISHVLAFFAASD 163

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149
            +V  N+V      +   E R +   Q   E +HS T+  +I +  + E E    LF+  
Sbjct: 164 GIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTY-IREPEQREYLFDAV 222

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P +  KA+WAL++              D    F + L  F  V EG++F   FA I 
Sbjct: 223 ETIPVVKQKADWALRWIS------------DKRATFAERLVAFAAV-EGIFFSGSFASIF 269

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   + +       HL  +        ++ EA 
Sbjct: 270 WLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRRRAHPDTVLKIITEAV 322

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E A+  E++P   +G+N+    QY++++A+R    +G  P+   +  PF +M+  I L
Sbjct: 323 EIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSLG-NPVHYGSTCPFDFMTN-ISL 380

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           + + NFFE +V EY +    + D
Sbjct: 381 EGKTNFFEKKVAEYAKAGVARKD 403


>gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens]
 gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 28/303 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA
Sbjct: 59  QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++           G K+A      +  V +   EG++F   FA I  L +   M G+  
Sbjct: 119 LRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +         HL  K  +++ R ++  A  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV E
Sbjct: 219 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGE 276

Query: 343 YQQ 345
           YQ+
Sbjct: 277 YQR 279


>gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen
           and kidney necrosis virus]
 gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen
           and kidney necrosis virus]
          Length = 312

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 148/306 (48%), Gaps = 27/306 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W  Y  A  + W   EV +  D+  W  K  LT+ ER  +   L FFA ++ +V +N+V 
Sbjct: 14  WAMYKKAVASFWTVEEVDLSTDVRHWTEK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71

Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159
              + L   PE R +   Q   E +H+  +  +I +L   E +  LF+   ++P + AKA
Sbjct: 72  NFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA Q+   L++   +  T+         L  F  V EG+ F   FA I  L + + M G
Sbjct: 132 QWAAQW---LNATHKSIATR---------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   +  Q+         K  Q  +  ++ +A  +E A+  E 
Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIISDAVDIETAFFQEA 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   I ++ + NFFE R
Sbjct: 232 LKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYN-VANPFDFMDN-ISIEGKTNFFERR 289

Query: 340 VTEYQQ 345
           V+EYQ+
Sbjct: 290 VSEYQR 295


>gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium QM B1551]
 gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium DSM 319]
 gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium QM B1551]
 gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium DSM 319]
          Length = 347

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 161/323 (49%), Gaps = 28/323 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +++ WA+ KY     N W P E+ M  D+   K    LT DE+    + +G  A  +S +
Sbjct: 35  VRFSWAFPKYKRMLANFWTPFEINMGQDI---KQFPQLTADEQESFLKIIGLLALLDS-I 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
            ++    +  ++++      ++  A +E VH+H++ Y+++SL     + E+F  +R    
Sbjct: 91  QSDYASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKGKQDEVFEYWRTDEK 150

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + A+ ++     +  S  +         + FL+ + V+ V+ EG++FY+GFA   +L R 
Sbjct: 151 LRARNDFITNGYKAFSEEATV-------ENFLKSM-VYDVILEGLFFYSGFAFFYNLARN 202

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KMV  +    YI RDE LH+     +  ++  ENP   T+E +        EA  LEI 
Sbjct: 203 QKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETFVVETFQEAARLEIE 262

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL-------EPLFKYTENPFPWM--SE 325
           +A   + + F G+     +QY++++AN+RC+Q+G         P+    ENP  W+   +
Sbjct: 263 WAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPI----ENPLRWIIAYQ 318

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            +DL K  +FFE +  +Y + ++
Sbjct: 319 EVDLGK-TDFFEQKSRQYTKASD 340


>gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
 gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
          Length = 358

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +K    L+
Sbjct: 27  TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 83

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + ER    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 84  EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 142

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  ++   ++  P +       L+  Q +        T    + F++ L   Y
Sbjct: 143 DTICEPQERNDILYQWKNDPHL-------LERNQFIGDLYNDFQTNKNTETFVKTLVANY 195

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K E P L+
Sbjct: 196 IL-EGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELKKEEPSLF 254

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +     R M+ +    EI + H  +     GL     E+Y++++ N RC  +G EP++
Sbjct: 255 HPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQNLGFEPIY 314

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
             +E       W+S+  +    K +FFE + T Y + + L
Sbjct: 315 PGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSAL 354


>gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 345

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 20/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +++ WA+ KY     N W P E+ M  D+   K    L   E+    + +G  A  +S +
Sbjct: 35  VRFSWAYPKYKKMLANFWTPFEINMSQDI---KQFPELRKSEQEAFLKIIGLLALLDS-I 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
             +    +  ++++      ++  A +E +H+H++ Y+++SL     + E+F  +R  P 
Sbjct: 91  QTDYAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQKQDEVFEFWRTEPI 150

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + +  Y     +PS          E L    VF VV EG++FY+GFA    L R
Sbjct: 151 LAERNEFVVNGYKDFAENPS---------AENLLKSIVFDVVLEGLFFYSGFAFFYHLAR 201

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KMV  +    YI RDE +H++  + +  +I  ENP L T E  +  +     A  LEI
Sbjct: 202 NQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKFVQETFKRAAELEI 261

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLK 330
            +A + +     G+     E Y++F AN RC+Q+G E P   Y  NP  W+   E +D  
Sbjct: 262 EWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNPLRWIVAYEQVDHG 321

Query: 331 KEKNFFETRVTEYQQ 345
           K  +FFE +  +Y +
Sbjct: 322 K-SDFFEQKSRQYTK 335


>gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase M2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 345

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 37/353 (10%)

Query: 7   LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57
           + P+ AG + +  D   +  NA  +  Q        L P++Y   W KY    +  W   
Sbjct: 1   MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R + 
Sbjct: 61  EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +HS T+  ++ +   D  E   L +  + +P I  KA W +++    SS SF
Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIG--SSASF 175

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                       Q   + +   EG++F   F  +  L +   M G+    + I RDE LH
Sbjct: 176 ------------QQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLH 223

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F         + N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    Q
Sbjct: 224 TDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQ 277

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+  
Sbjct: 278 YIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAG 328


>gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
          Length = 353

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 156/314 (49%), Gaps = 22/314 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +++ WA+ KY     N W P E+ M  D+   K    L+++E+    + +G  A  +S +
Sbjct: 42  VRFQWAFPKYKRMLANFWTPFEINMSQDI---KQFPDLSEEEKEAFLKIIGLLALLDS-I 97

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153
             +    +  +L++      ++  A +E +H+H++ Y+++S+ +D   + E+F  +R  P
Sbjct: 98  QTDYAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSI-VDKNKQDEVFEFWRTEP 156

Query: 154 SITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           ++  +  + A  Y     SP+  +  K           +F VV EG++FY+GFA    L 
Sbjct: 157 ALIKRNEFVASGYRNFAESPTVDSLLKS---------IIFDVVLEGLFFYSGFAFFYHLA 207

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KMV  +    YI RDE LH++  + +  +I  E P   TKE  + + +   EA  LE
Sbjct: 208 RNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEFAESTFREAAYLE 267

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS--EVIDL 329
           I +A   +     G+     E+Y++F AN R +Q+G    F+ +  NP  W+   E +DL
Sbjct: 268 IEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNPLRWIKAYEEVDL 327

Query: 330 KKEKNFFETRVTEY 343
            K  +FFE +  +Y
Sbjct: 328 GK-SDFFEQKPRQY 340


>gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 352

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 164/331 (49%), Gaps = 20/331 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    LKY W  + Y  A NN W+P E+ +  D+  ++    L   E+    R L F
Sbjct: 34  TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LDQYEKKAYDRILSF 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   N+   +  +++  E    L  Q ++E++HS ++ YI+ ++   E    + 
Sbjct: 91  LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            +++E   +  +  +   QY + L +        D +  F++ L   Y++ EG++FY+GF
Sbjct: 150 YLWKEDEHLLKRNEFIGEQYNEFLEN--------DDEFRFMKVLVANYIL-EGIYFYSGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           +   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E   L+  E Q   R ML
Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKEREDLFVPELQNYYRNML 260

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322
            E    EIA+    +     GLN    E Y++++ N R   +GLE L++ + E P    W
Sbjct: 261 KEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLGLEALYEGFDEIPESMKW 320

Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           + E  D    K +FFE +VT Y + + ++ D
Sbjct: 321 VDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
 gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
          Length = 331

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    D   L P+++   WE Y  A  + W   E+ +  D   W++   LT+ E  
Sbjct: 9   DEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---LTEGETH 65

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E + +   Q   E VHS T+  +I +   
Sbjct: 66  FIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYVK 125

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +  +  KA+WAL++                +  + + L  F  V E
Sbjct: 126 DNKEKDKLFNAIDTMDCVKKKADWALRWID--------------EGNYAERLIAFAAV-E 170

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F         + N HL  K  
Sbjct: 171 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFA------CLLYNDHLVNKLS 224

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++K   ++ +A  +E  +  +++P   +G+NA    QY++F+A+R   ++  + ++  + 
Sbjct: 225 KEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDKVYG-SS 283

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E+I L+ + NFFE RV +YQ+   +K
Sbjct: 284 NPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315


>gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 340

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus]
          Length = 333

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 28  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 85  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFTAVEGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 244 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQK 316


>gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus]
 gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii VEG]
          Length = 391

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 23/314 (7%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  IK  L FFA+S+
Sbjct: 85  ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+       +  PE R +   Q   E +HS T+  +I     DE E   ++  V 
Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAVH 201

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++ A A  A      ++           ++    +  V +   EG+ F   F  I  L +
Sbjct: 202 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCAIFWLKK 250

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G+    + I RDE LH +F   + +Q+K + P        +  + M+ EA  +E 
Sbjct: 251 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLP-------DKVVQDMVREAVTVER 303

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           A+  E +P   +G+N  S  QY++F+A+R    +G+  +F +  NPF WM E+I L+ + 
Sbjct: 304 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 361

Query: 334 NFFETRVTEYQQGA 347
           NFFE RV EYQ+  
Sbjct: 362 NFFEKRVGEYQKAG 375


>gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii GT1]
          Length = 391

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 23/314 (7%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  IK  L FFA+S+
Sbjct: 85  ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+       +  PE R +   Q   E +HS T+  +I     DE E   ++  V 
Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAVH 201

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++ A A  A      ++           ++    +  V +   EG+ F   F  I  L +
Sbjct: 202 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCAIFWLKK 250

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G+    + I RDE LH +F   + +Q+K + P        +  + M+ EA  +E 
Sbjct: 251 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLP-------DKVVQDMVREAVTVER 303

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           A+  E +P   +G+N  S  QY++F+A+R    +G+  +F +  NPF WM E+I L+ + 
Sbjct: 304 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 361

Query: 334 NFFETRVTEYQQGA 347
           NFFE RV EYQ+  
Sbjct: 362 NFFEKRVGEYQKAG 375


>gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni RM1221]
 gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni RM1221]
 gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 340

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 392

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W KY    +  W   E+ + +D+  W +   L D ER  IK  L FFA S+
Sbjct: 84  LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 140

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS T+  ++ +   D  E   L +  +
Sbjct: 141 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++    SS SF            Q+  + +   EG++F   F  +  
Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 246

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + N       H+  K  +++   ++ +A  
Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVN 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T+ PF +M E+I L+
Sbjct: 301 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQ 358

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE +V EYQ+  
Sbjct: 359 GKTNFFERKVGEYQKAG 375


>gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
 gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
          Length = 313

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 26/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W  Y  A +  W   EV +  D   + SK  L DDER  IK  L FFA+++
Sbjct: 8   LFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDFTSK--LNDDERYFIKHVLAFFAAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  + +++   E + +  +Q   E VH+  +  +I  L  DE E   L N + 
Sbjct: 66  SIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLNAFE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  K +WA+++  +      +T T      F + +  F +V EG++F   FA I  
Sbjct: 126 RMPCVRKKTDWAMKWINS------STAT------FAERMVAFAIV-EGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           +     M G+    + I RDE LH +F           N  +  K       +M  EA  
Sbjct: 173 IKTKGIMPGLTFSNELISRDEGLHTDFA------CLYYNTRVHDKLAPDTVLSMFKEAVA 226

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+NA S   Y++F+A+R   Q+  +P   +  NPF +M+  I L+
Sbjct: 227 IEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLH-QPKHFHARNPFEFMNN-ISLE 284

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EY++
Sbjct: 285 GKTNFFEKRVGEYKR 299


>gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus]
 gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus]
 gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++FIA+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE L  +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLRCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    E Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQQ
Sbjct: 288 GKTNFFEKRVGEYQQ 302


>gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 347

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  +R++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+   K    L+
Sbjct: 16  IELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS ++ YI+
Sbjct: 73  EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+          + L+  + +         K +++ F++ L   Y++
Sbjct: 132 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 186

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E P L+T+
Sbjct: 187 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 245

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G   ++  
Sbjct: 246 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 305

Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            E   P   W+SE  D  K K +FFE + + Y + A ++ D
Sbjct: 306 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 347

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 23/346 (6%)

Query: 12  AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           AG+  V +  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+  +++
Sbjct: 13  AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS +
Sbjct: 71  ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126

Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQ 187
           + Y++ ++    +  ++   +++ P + ++  +    Y +     S         + F++
Sbjct: 127 YSYMLDTICEPQERNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSL--------EAFVR 178

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +   Y++ EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++ 
Sbjct: 179 TMIANYIL-EGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELRK 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  +
Sbjct: 238 ELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKNL 297

Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           GL P+++  E       W+S+  +    K +FFE + T Y + + L
Sbjct: 298 GLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343


>gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
 gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
          Length = 326

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 153/324 (47%), Gaps = 28/324 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 28  ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 84

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 85  LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 144

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++     S   T G +           
Sbjct: 145 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 191

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 192 VAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 245 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 304

Query: 311 PLFKYTENPFPWMSEVIDLKKEKN 334
            +F+  ENPF +M E I L+ + N
Sbjct: 305 KVFQ-AENPFDFM-ENISLEGKTN 326


>gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small
           chain); putative [Variola major virus]
 gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 333

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 28  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 85  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++    +S             + + L  F  V EG++F   FA I  
Sbjct: 145 TMPCVKKKADWAQKWIHDSAS-------------YGERLIAFAAV-EGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQK 316


>gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
 gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
          Length = 493

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 29/336 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            R  + D+ +L    +   L P+KY   WE Y     + W   EV    DL  W     L
Sbjct: 160 SRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLIDWHR---L 216

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  +
Sbjct: 217 KPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVHSEMYSVL 276

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +     +  E   LF+    +P++  KA WA+++  +                   +  V
Sbjct: 277 LDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISS--------------SNVFAERLV 322

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG+ F   F  I  L +   M G++     I RDE LH +F   + +       H
Sbjct: 323 GFACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYS-------H 375

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  +  +++   ++ EA  LE  +  E +    +G+NA    QY++F+A+R    +G E 
Sbjct: 376 LKNRLSRERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYEK 435

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +  T NPF WM E+I L+ + NFFE RV EYQ+  
Sbjct: 436 HYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAG 469


>gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
 gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
          Length = 310

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 149/327 (45%), Gaps = 36/327 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y +     W   E+    DL        LT+ E+  I+  L FFA SE
Sbjct: 9   LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLP---DLVKLTEGEKHFIRHVLAFFAQSE 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E   LFN   
Sbjct: 66  GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA W +++  +             D+     L  F +V EG++F   F  I  
Sbjct: 126 NVPTVQRKAQWVMKWISS-------------DKPLAMRLIAFGLV-EGLFFAGSFCAIYY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267
             +   + G+A     I RDE LH +F       + Q K+          QQ+   +  E
Sbjct: 172 FRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  E +P   +G+NA    QY++  A+      G  P F  +ENPF +M  ++
Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYMR-LL 280

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           D++ + NFFE RVTEY+  Q  +L +D
Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen]
          Length = 319

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus]
 gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia
           virus]
 gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR]
          Length = 319

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus
           cuniculus]
          Length = 400

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 28/306 (9%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W +      + W   EV +  D+  W++   L ++ER  I   L FFA+S+ +V  N+V 
Sbjct: 102 WTRNKKGEASFWTAEEVDLSKDIQHWEA---LKEEERYFISHVLAFFAASDGIVNENLVE 158

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA
Sbjct: 159 RFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKA 218

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +WAL++           G K+A      +  V +   EG++F   FA I  L +   M G
Sbjct: 219 DWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPG 265

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   +         HL  K  +Q+ + ++  A  +E  +  E 
Sbjct: 266 LTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVQEIIVNAVRIEQEFLTEA 318

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE R
Sbjct: 319 LPVKLIGMNCALMKQYIEFVADRLLLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKR 376

Query: 340 VTEYQQ 345
           V EYQ+
Sbjct: 377 VGEYQR 382


>gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
 gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
          Length = 347

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 164/339 (48%), Gaps = 17/339 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+   K    LT
Sbjct: 16  TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS ++ Y++
Sbjct: 73  VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYV 194
            ++   +     +Y+       K +  L    T     +    KD     F++ L   Y+
Sbjct: 132 DTICEPQTRNEVLYQ------WKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANYI 185

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E P L++
Sbjct: 186 L-EGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTEEPSLFS 244

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E     R M+ E    EIA+    +     GL       Y++++ N RC  +G EPL+ 
Sbjct: 245 REKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLGFEPLYD 304

Query: 315 -YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            Y   P    W+S+  +    K +FFE R T Y + + L
Sbjct: 305 GYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343


>gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 347

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 164/339 (48%), Gaps = 17/339 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+   K    LT
Sbjct: 16  TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS ++ Y++
Sbjct: 73  VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYV 194
            ++   +     +Y+       K +  L    T     +    KD     F++ L   Y+
Sbjct: 132 DTICEPQTRNEVLYQ------WKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANYI 185

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E P L++
Sbjct: 186 L-EGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTEEPSLFS 244

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E     R M+ E    EIA+    +     GL       Y++++ N RC  +G EPL+ 
Sbjct: 245 REKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLGFEPLYD 304

Query: 315 -YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            Y   P    W+S+  +    K +FFE R T Y + + L
Sbjct: 305 GYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343


>gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K    W+ Y  A  + W   E+ + +DL  W+S   L+ +ER  +   L FFA+S+
Sbjct: 28  LFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLKDWES---LSINERHFVSHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +++ E R +   Q   E +HS T+  +I +   D  E   L N   
Sbjct: 85  GIVNENLTGNFSTEVTSAEARCFYGFQIAVENIHSETYSLLIDTYIKDAQEKDHLLNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  KANWAL++              DA      +  + +   EG++F   F  I  
Sbjct: 145 TVPCVQKKANWALRWC-------------DAGNASFAERCIAFAAVEGIFFSGSFCAIFW 191

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +++  + P       + +   ++  A  
Sbjct: 192 LKKRGLMPGLCFSNELISRDEGLHCDFACLIYSKLVNQLP-------ESRIEEIITNAVE 244

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    QY++F A+R    +G +  +    NPF WM E+I L+
Sbjct: 245 IEKEFVSDALPVELIGMNSKLMCQYIEFCADRLLGALGCKKHYMAV-NPFEWM-EMISLQ 302

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EY +  
Sbjct: 303 GKTNFFEKRVGEYAKSG 319


>gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus]
 gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus]
          Length = 319

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa]
 gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa]
          Length = 350

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 37/316 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   W+ Y  A  + W   EV +  D   W++   L D ER  I R L FFA+S+
Sbjct: 58  IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+V    + +  PE R +   Q   E VHS        SL      LFN   E  
Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSE------MSL------LFNAIYEFE 162

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  KA+WAL +   + +P            + + L  F  V EG++F   FA I  L +
Sbjct: 163 FVKKKADWALCWIADIKAP------------YAERLIAFAAV-EGIFFSGSFAAIFWLKK 209

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G+    + I RDE LH +F   +   IK        K  +++   ++ EA  +E 
Sbjct: 210 RGLMPGLTHSNELISRDEGLHRDFACLLYTYIK-------NKPSEERIYQIIREAVDIEK 262

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  E +P   +G+N     QY++++A+    ++    ++ Y++NPF +M E I ++ + 
Sbjct: 263 EYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY-YSDNPFDFM-ERISIEAKT 320

Query: 334 NFFETRVTEYQQGAEL 349
           NFFE RV+EYQ+   L
Sbjct: 321 NFFEKRVSEYQKAGVL 336


>gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus]
          Length = 319

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 146/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L + + M G+    + I RDE LH +F   +         HL     ++  ++++ +A  
Sbjct: 177 LKKRDLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVKSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|227541|prf||1706181A ribonucleotide reductase
          Length = 290

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 28/295 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E 
Sbjct: 3   WTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA 59

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
           R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++     
Sbjct: 60  RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI---- 115

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G K+A      +  V +   EG++F   FA I  L +   M G+    + I RD
Sbjct: 116 ------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 166

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH +F   +         HL  K  +++ R ++  A  +E  +  E +P   +G+N  
Sbjct: 167 EGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCT 219

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 220 LMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 272


>gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
 gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
          Length = 331

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 29/317 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K+   WE Y     + W   E+ +  D+  W++   L+D ER  I   L FFA+S+
Sbjct: 21  LFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERHFISHVLAFFAASD 77

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ +     +   E + +   Q   E +HS T+  +I +   D  E   L     
Sbjct: 78  GIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIKDSAEKDRLLRAIE 137

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++   + SP F             +  + +   EG++F   F  I  
Sbjct: 138 TIPCVQKKADWALKW---IDSPVFA------------ERIIAFAAVEGIFFSGSFCSIFW 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE LH  F   +  +      H+  +  Q++   ++ +A  
Sbjct: 183 LKKRGLMPGLSFSNELISRDEGLHCEFACLLYTK------HILNQLPQERVIEIMLDAVE 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+NA   +QY+++IA+    ++G    F  + NPF +M E+I L 
Sbjct: 237 IEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-SANPFDFM-ELISLP 294

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EYQ+  
Sbjct: 295 GKTNFFEKRVGEYQKAG 311


>gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 340

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN +  E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVHKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ L+   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W    + + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           hominis ATCC BAA-381]
 gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 340

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV   DD+  +     LT  E+ M +       S +S   
Sbjct: 35  KYVWALKLWDIMEANTWFPREVDTTDDVRDYNF--NLTPAEKRMYELVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +  +++ M +    +  
Sbjct: 93  NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICQNTDQIYEMEKFDDVLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         + D+  L    V   + EG++FY+GF  I +L R+ KM
Sbjct: 153 KNDYISSIYEELAG--------EVDENKLLLAMVANQILEGIYFYSGFCSIYALARSGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  +   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNDKNIAKIYEMFEKAGELEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +GL     E+Y+ ++ + R   IGL   +    +P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGLTDEIIEEYIHYLVDNRLSAIGLNKKYN-ARHPIKWVDDFAKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Nomascus leucogenys]
 gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Nomascus leucogenys]
          Length = 297

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 28/303 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA
Sbjct: 59  QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++           G K+A      +  V +   EG++F   FA I  L +   M G+  
Sbjct: 119 LRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +         HL  K  +++ R ++  A  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV E
Sbjct: 219 KLIGMNCILMKQYIEFVADRLMLELGFGKVFR-VENPFDFM-ENISLEGKTNFFEKRVGE 276

Query: 343 YQQ 345
           YQ+
Sbjct: 277 YQR 279


>gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
 gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
 gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
          Length = 352

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 31/340 (9%)

Query: 12  AGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             E ++N  ++ ML  +R + N+L  L     W  Y  A  + W+  E+ +  D   W+S
Sbjct: 24  VNEVKINQVNEPMLKYSRENRNELKELIKD-IWSMYKKAEASFWVTEEIDLSQDTRDWES 82

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D ER  IK  L FFA+S+ +V  N+ +   R +  PE R Y   Q   E +HS T
Sbjct: 83  ---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQMSIEQIHSET 139

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I     +  E   LF     + ++  KA WA ++              ++++ F +
Sbjct: 140 YSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWM-------------NSERSFAE 186

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +  F  V EG+ F   F  I  L +   M G+    + I RDE LH +F   +   +K 
Sbjct: 187 RIIGFCAV-EGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLIYKALKF 245

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           + P         + + ++ EA  +E  +  +++P   +G+N+    QY++F+A+R    +
Sbjct: 246 KLP-------APRVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFAL 298

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +  ++  + NPF WM ++I L+ + NFFE RV EYQ   
Sbjct: 299 DIPKIYNVS-NPFDWM-DLISLQGKTNFFEKRVGEYQMAG 336


>gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
 gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
          Length = 387

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y  +  + W   E+ +  D   W++K  +  DER  I R L FFA+S+
Sbjct: 76  VFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWENK--MNKDERFFISRVLAFFAASD 133

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +  PE +     Q   E +HS T+  +I +   D  E   LFN   
Sbjct: 134 GIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFKDPKEADFLFNAID 193

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  KA+WA+++ Q            D +  F + L  F  + EG++F   FA I  
Sbjct: 194 NIKYIGEKADWAIRWIQ------------DEEALFAERLVAFAAI-EGIFFSGSFASIFW 240

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269
           L +   M G+    + I RDE +H ++   + + ++ + +P +  K        ++ EA 
Sbjct: 241 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLENKPDPSIIEK--------IITEAV 292

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  Y  + +P   +G+N     QY+++ A+R     G +  +  T NPF +M E I L
Sbjct: 293 SIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT-NPFDFM-ENISL 350

Query: 330 KKEKNFFETRVTEYQQGA 347
             + NFFE RV++YQ+  
Sbjct: 351 AGKTNFFEKRVSDYQRAG 368


>gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 120

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 70/86 (81%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 35  QRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 94

Query: 74  LTDDERLMIKRNLGFFASSESLVANN 99
           LT+DER +++RNLGFF +++SL ANN
Sbjct: 95  LTEDERRIVRRNLGFFTTADSLAANN 120


>gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 348

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 26/333 (7%)

Query: 24  MLNARSDVNQLL-------PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ML   SD   LL       P +Y WA++ +      HW+P EVP+ +D   W +K  LTD
Sbjct: 1   MLTVASDRPGLLTPSLTYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWATK--LTD 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYII 135
            ER ++ +   FF  S+  V  N  +  Y  L  P E R  L   +  E +H   +  ++
Sbjct: 59  KERNLLTQIFRFFTQSDVEVGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLL 117

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++G+ + E F+ + E   + AK ++  ++              + D++ L  + VF   
Sbjct: 118 ETIGMPDTE-FSAFMEYEEMAAKHDYLGKFGC------------ETDRDILTSMAVFGGF 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+  +  FA +++  R NKM G+ +   + +RDESLH    + + +    E   L TK
Sbjct: 165 TEGLQLFASFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGAL-TK 223

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             +            LE  +       G V G+     + Y+++IA+ R  Q+ L  ++ 
Sbjct: 224 GVKDDIADCCKTVVSLEDKFIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYG 283

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             E+P PW++E+++  +  NFFE R TEY +GA
Sbjct: 284 VEEHPIPWLTEILNGVEHANFFEARATEYSKGA 316


>gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER  IK
Sbjct: 19  LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +  PE R +   Q   E +H  T+  +I +  +D  
Sbjct: 76  HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVVDPD 135

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   L +  R +P I  KA WA+++    S  SF T              V +   EG++
Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   +  +      ++  K  + +
Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +     ++NPF
Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SKNPF 294

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            +M ++I L+ + NFFE +V EYQ+  
Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320


>gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
 gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 325

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 155/326 (47%), Gaps = 30/326 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+ + +   LLP+KY   W+ Y  A ++ W   EV +  D+  W   N     ER  I 
Sbjct: 10  LLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNA---KERHFIS 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+V      +   E R +   Q   E +HS  +  +I +   D  
Sbjct: 67  YVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDND 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF+  R +PS+  KA+WA+++ +            D + +F   L  F  V EG++
Sbjct: 127 EKNFLFDAIRTIPSVKEKADWAIRWIE------------DKNSDFATRLVAFACV-EGIF 173

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH  F   +         H   K+   +
Sbjct: 174 FSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLL---------HYHLKKKCNR 224

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  E++P   +G+N     +Y++F+A+R    +G E ++  T NPF
Sbjct: 225 IKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNAT-NPF 283

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L  + NFF+ R ++YQ+ 
Sbjct: 284 DFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima]
          Length = 300

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 144/303 (47%), Gaps = 28/303 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  D+A W+S   L  +E+  I   L FFA+S+ +V  N+V    
Sbjct: 2   YKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA
Sbjct: 59  KEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           +++    SS                +  V +   EG++F   FA I  L +   M G+  
Sbjct: 119 MRWINDDSSS-------------YAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + +       HL  K  Q++   ++ EA  +E  +  E +P 
Sbjct: 166 SNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALPC 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N     QY++F+A+R   ++  + L+   ENPF +M E I L+ + NFFE RV E
Sbjct: 219 RLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVGE 276

Query: 343 YQQ 345
           YQ+
Sbjct: 277 YQK 279


>gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica
           ATCC 49814]
 gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814]
          Length = 345

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 19/314 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HW+P EVP+ +D   W  K  L D ER ++ +   FF  S+  
Sbjct: 21  PFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWAGK--LNDKERNLLTQIFRFFTQSDVE 78

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
           V  N  +  Y  L  P E R  L   +  E VH   +  ++ ++G+ + E F+ + E   
Sbjct: 79  VGAN-YMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++  +++             D + + L  + VF    EG+  +  FA +++  R 
Sbjct: 137 MAAKHDYLGKFSV------------DTEADILTSMAVFGGFTEGLQLFASFAMLMNFPRF 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    + + +    E   L TK  +            LE  
Sbjct: 185 NKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGAL-TKTVKDDITDCCQTVVKLEDK 243

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V G+     + Y+++IA+ R  Q+ L+P++   E+P PW++E+++  +  
Sbjct: 244 FIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVDEHPIPWLTEILNGVEHA 303

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY +GA
Sbjct: 304 NFFEARATEYSKGA 317


>gi|885759|gb|AAA69374.1| E4L [Variola virus]
 gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus]
 gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
 gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
          Length = 352

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HWMP EVP+ +D   W  K  LT+ ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTEHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLDYEEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K N+  Q+              D D++  + L +F    EGM  +  FA +++  R N
Sbjct: 129 ADKHNYMQQFG------------VDNDEDIARTLAMFGAFTEGMQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + ++   E   L TK  ++    +  +   LE  +
Sbjct: 177 KMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERDCL-TKAVKEDIIDICQKTVRLEDNF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+ L+P++   ++P PW++ +I+  +  N
Sbjct: 236 IDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLINGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY +GA
Sbjct: 296 FFEQRATEYSKGA 308


>gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
 gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
          Length = 346

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 19/329 (5%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++N +S +V     + Y WA+ KY     N W P E+ M  D+   K    LT+ E+  
Sbjct: 21  RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPNLTEREQDA 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--G 139
             + +G  A  +S +  +    +  ++++      ++  A +E +H+H++ Y+++SL   
Sbjct: 78  FLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             + E+F  +R  P +  + ++         +  +    ++ + E L    V+ V+ EG+
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFV--------TNGYKAFAENPNVENLLKSIVYDVILEGL 188

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E  Q
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYNTPELAQ 248

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318
             R    +A  LEI +A+  +     G++      Y++F AN R HQ+G + P   Y  N
Sbjct: 249 FVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFDRPFDGYRTN 308

Query: 319 PFPWMS--EVIDLKKEKNFFETRVTEYQQ 345
           P  W+   E +DL K  +FFE +  +Y +
Sbjct: 309 PLRWIKAYEEVDLGK-SDFFEQKSRQYTK 336


>gi|885717|gb|AAA69333.1| C8L [Variola virus]
 gi|885826|gb|AAA69439.1| C8L [Variola virus]
 gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus]
 gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna
           ATCC 29328]
 gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 29328]
          Length = 354

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+   K    L+
Sbjct: 23  IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS ++ YI+
Sbjct: 80  EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+          + L+  + +         K +++ F++ L   Y++
Sbjct: 139 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 193

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E P L+T+
Sbjct: 194 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 252

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G   ++  
Sbjct: 253 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 312

Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            E   P   W+SE  D  K K +FFE + + Y + A ++ D
Sbjct: 313 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
 gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
          Length = 347

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 15/346 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  + V  ++M+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIKD 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAVH
Sbjct: 68  YKM---LPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVH 123

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +     +Y+       K +  L          +    ++   E L 
Sbjct: 124 SQSYSYMLDTICEPQERNAVLYQ------WKEDRHLLERNEFIGNLYNAFQEEKSPEMLA 177

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL     ++ ++K 
Sbjct: 178 CTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELKK 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T E  +K R+M+ E    EI + H  +     GLN      Y+Q++ N RC  +
Sbjct: 238 EEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRGL 297

Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            LEP+++  E       W+S+  +    K +FFE R T Y + + L
Sbjct: 298 ELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343


>gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
 gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
          Length = 347

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+   K    L+
Sbjct: 16  IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS ++ YI+
Sbjct: 73  EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+          + L+  + +         K +++ F++ L   Y++
Sbjct: 132 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 186

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E P L+T+
Sbjct: 187 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 245

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G   ++  
Sbjct: 246 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 305

Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            E   P   W+SE  D  K K +FFE + + Y + A ++ D
Sbjct: 306 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus]
 gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus]
          Length = 333

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT +E+  IK  L FFA+S+
Sbjct: 28  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKHFIKHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 85  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  V +   EG++F   FA I  
Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSASYGERLVAFAAVEGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 244 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQK 316


>gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
 gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
          Length = 320

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  IK  L FFASS+
Sbjct: 14  IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA+WA ++  +               +   +  V +   EG++F   FA I  
Sbjct: 131 TMECVKKKADWARKWISS--------------NKVYGERVVAFAAVEGIFFSGSFAAIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE LH +F   +         HL     ++   +++ +A  
Sbjct: 177 IKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSKEVITSIIIDAVN 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++F+A+R   ++G E +F    NPF +M E I L+
Sbjct: 230 IEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFN-VYNPFSFM-EYISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 288 GKTNFFERRVSEYQK 302


>gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus]
 gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus]
          Length = 319

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R ++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRYIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens]
          Length = 349

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 27/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+++   W+ Y  A  + W   E+ +  D+  W  K  L D ER  IK  L FFA+S+
Sbjct: 41  LFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQK--LNDKERHFIKHVLAFFAASD 98

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D   + E      
Sbjct: 99  GIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRDAKEKHECLTAID 158

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +T KA WAL++              D D+    +  + +   EG++F   F  +  
Sbjct: 159 TMPCVTKKAQWALRWC-------------DPDRASFAERIIAFAAVEGIFFSGSFCAVFW 205

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G++   + I RDE +H +F   + ++++ + P        +    ++ +A  
Sbjct: 206 LKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLP-------VETINALIGDAVT 258

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N+ +  QY++F A+R    +G   L++ T NPF WM E+I L+
Sbjct: 259 IEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-NPFDWM-ELISLQ 316

Query: 331 KEKNFFETRVTEYQQGA 347
            + NFFE RV EY +  
Sbjct: 317 GKTNFFEKRVGEYAKSG 333


>gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
 gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
          Length = 355

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 166/340 (48%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + V  ++M+   + ++N    +KY W    Y  A NN W+P E+ +  D+   K    L 
Sbjct: 24  IQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDI---KDYRNLP 80

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 81  KAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSIQAFQEAVHSQSYSYML 139

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  E+   ++E   + A+     ++   L + +F T   +   E L    V  
Sbjct: 140 DTICEPQERNEVLYQWKEDEHLLARN----EFIGNLYN-AFQT---EKSMEMLVKTIVAN 191

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL    +++ ++K E P L+
Sbjct: 192 YILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKKEQPDLF 251

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+++  + R+M+ E    EI + H  +     GLN      Y+Q++ N RC  +G  P++
Sbjct: 252 TEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNLGFAPIY 311

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           +  E       W+S+  +    K +FFE R T Y + + L
Sbjct: 312 EGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSAL 351


>gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
 gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
          Length = 340

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+ +    K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ ++   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
 gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
          Length = 347

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L 
Sbjct: 16  TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +SL + N+  A+  +++  E    L  Q F+E VHS ++ Y++
Sbjct: 73  ASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  ++   ++E   + A+     ++   L    +     D   E L  + V  
Sbjct: 132 DTICEPQERNDVLYQWKEDEHLLARN----EFIGNL----YNQFQDDKSPEALARVLVAN 183

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K E P L+
Sbjct: 184 YILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELKEEEPELF 243

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q+G EPL+
Sbjct: 244 TPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQLGFEPLY 303

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           +  E       W+S+  +    K +FFE R T Y + + L
Sbjct: 304 EGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343


>gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 1]
          Length = 324

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 28/313 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+     W+ Y    +  W   E+    DL  W   N L  +E+  IK  L FFASS+
Sbjct: 19  MFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQYYIKMILAFFASSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+ L     +   E R +   Q   E +HS T+  +I S   DE E   LF+   
Sbjct: 76  GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDENEKNKLFHSLE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P I  K  WA+++              D    F   L  F  V EG++F   F  I  
Sbjct: 136 HFPCIEKKGKWAMKWIN------------DKKSNFSTRLVAFACV-EGIFFSGAFCSIYW 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE+LH  F + + ++++        K  ++K R ++ EA +
Sbjct: 183 LKKRGIMPGLTFSNELISRDEALHTEFAVHLFHKLE-------KKINKKKIREIIEEAVV 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N+    QY++++A+R   Q+G E +++ T NPF +M E+I L+
Sbjct: 236 IEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIYR-TNNPFDFM-ELISLE 293

Query: 331 KEKNFFETRVTEY 343
           ++ NFFE+RV+EY
Sbjct: 294 QKTNFFESRVSEY 306


>gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
 gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
          Length = 340

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTRDALDYRC--NLTAAEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDATLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISGIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+ ++   K  +M   A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ ++   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDRIYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
          Length = 340

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTRDALDYRCH--LTAAEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVETICDNTDLIYEMEKHDATLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISGIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+ ++   K  +M   A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   I L+ ++   ++P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
 gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
          Length = 354

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 171/341 (50%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+   K    L+
Sbjct: 23  IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS ++ YI+
Sbjct: 80  EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+          + L+  + +         + +++ F++ L   Y++
Sbjct: 139 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEEKSERNFMKALIANYIL 193

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E P L+T+
Sbjct: 194 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 252

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E   + + M+ + +  EI +A   + +   GL+    E Y++++ N R   +G   ++  
Sbjct: 253 EKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 312

Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            E   P   W+SE  D  K K +FFE + + Y + A ++ D
Sbjct: 313 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335710|gb|AAA48294.1| F14 [Vaccinia virus]
          Length = 319

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 146/316 (46%), Gaps = 31/316 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N +T DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQ-YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
            +V  N+       +   E R  Y  R A E  +HS  +  +I +   D  E   LFN  
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFRMAIEN-IHSEMYSLLIDTYVKDSNEKNYLFNAI 129

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P +  KA+WA ++                D     +  + +   EG++F   FA I 
Sbjct: 130 ETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIF 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A 
Sbjct: 176 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAV 228

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L
Sbjct: 229 SIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISL 286

Query: 330 KKEKNFFETRVTEYQQ 345
           + + NFFE RV EYQ+
Sbjct: 287 EGKTNFFEKRVGEYQK 302


>gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
 gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
          Length = 347

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 164/338 (48%), Gaps = 15/338 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           ++V+ +RM+N  + ++N    +KYGW    Y  A NN W+P E+ M  D+   K    L+
Sbjct: 16  IDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDV---KDYRNLS 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    R L F    +S+   N+   +  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 73  GAEKRAYDRTLSFLIFLDSIQTANLPY-VGEYVTANEVNLCLTIQAFQEAVHSQSYSYML 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            S+   E     +Y+            L+  + +           +  + L+ +   Y++
Sbjct: 132 DSICSPEERERILYQ-----WRNDEHLLKRNKFIGDIYNEFQLNKSTHQLLKTMVANYIL 186

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++ E P L+T 
Sbjct: 187 -EGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELRKEEPQLFTV 245

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314
           E   + R M+ E    E+A+    + +   GL       Y++++AN RC  +G E L+  
Sbjct: 246 EAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCENLGFEILYPG 305

Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           Y + P    W+++  +    K +FFE + + Y +   +
Sbjct: 306 YEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSI 343


>gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 27/326 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML   S    L P+++   W+ Y  A  + W   EV +  D+  W +K  L D ER  IK
Sbjct: 1   MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDTK--LNDKERHFIK 58

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  +I +   D  
Sbjct: 59  HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E       +P +  KA WAL++              D D     +  + +   EG++
Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRWC-------------DPDHASFTERLLAFAAVEGIF 165

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G++   + I RDE LH +F   + ++++        K    +
Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLR-------KKLSDVQ 218

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +++  A  +E ++    +P   +G+N+ S  +Y++F A+R   ++G   L+  T NPF
Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM E+I L+ + NFFE RV EY + 
Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302


>gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
 gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
          Length = 340

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV   DD+  +     LT  E+ M         S +S   
Sbjct: 35  KYQWALKLWDLMEANTWFPKEVDTTDDVRDYNF--NLTSAEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +    +  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICENTDLIYEMEKHDDMLRR 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+      G    D+  L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDYISSVYEELA------GEVSDDKLLLA--MVANQILEGIYFYSGFTSIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E   L+ K    K   M   A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERADLFNKRNVDKIYEMFETAGNLEIDWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E+Y+ ++ ++R   IGLE  +   ++P  W+ +      +K NFF
Sbjct: 265 YITDNQIMGFTDDIIEEYIHYLVDQRLLAIGLEKRYD-AKHPIKWVDDFSKFNDQKSNFF 323

Query: 337 ETRVTEYQQGA 347
           E++VT Y +G+
Sbjct: 324 ESKVTNYSKGS 334


>gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa]
          Length = 333

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W+  EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 28  IFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 85  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + YM+F+A+R   ++G + ++  T NP  +M E I L+
Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQK 316


>gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 318

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 26/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           LLP+     W+ Y  A + HW   E+ M  D   W  K  L D ER  +K  L FFA+++
Sbjct: 9   LLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNKK--LNDKERFFLKHVLAFFAAAD 66

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  NI+  +   +   E   +  +Q F E VH+  +  ++     D  E   + N   
Sbjct: 67  VIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILNAIE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + S+  KA WA ++ +  S+             F + +  F +V EG++F   FA I  
Sbjct: 127 HIDSVKQKAAWAQKWIENQSAT------------FAERMVAFAIV-EGVFFSGSFAAIYY 173

Query: 211 LGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           +  + K  + G+    + I RDE LH +F     N+   E   L     + K  +M  EA
Sbjct: 174 IKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPEKNKLS----KTKVLSMFVEA 229

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E  +    +P   +G+N+ S  +Y++F+A+R   ++G +  F  T NPF +M+  I 
Sbjct: 230 VDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMNN-IS 287

Query: 329 LKKEKNFFETRVTEYQQ 345
           L+ + NFFE RV EY++
Sbjct: 288 LEGKTNFFEKRVGEYKR 304


>gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
          Length = 353

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 172/341 (50%), Gaps = 26/341 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +R++   S ++  L  +KY WA + Y +   N W+P ++ +  D   +K+   LTD E+ 
Sbjct: 27  RRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 83

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
                L F    +S+  NNI   +  +++ PE    L  Q F+EA+HS ++QYII S+  
Sbjct: 84  AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 142

Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            E    +++ +RE   +  +  + A  Y + L  P+        D+ F + +   Y++ E
Sbjct: 143 KEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPN--------DKNFSKVIIADYLL-E 193

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY GF     L   N+M+G ++  + I RDE  H+     ++ +I+ ENP  +  E 
Sbjct: 194 AIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
             +  +M  +A   EI + +  +    +G+   + EQY +++AN R   IGL+P+++ + 
Sbjct: 253 --EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYEGFN 310

Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +NP+  +++  D + E     NFFE  VT Y   + +  WD
Sbjct: 311 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351


>gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           ulcerans ATCC 49185]
          Length = 348

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 172/341 (50%), Gaps = 26/341 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +R++   S ++  L  +KY WA + Y +   N W+P ++ +  D   +K+   LTD E+ 
Sbjct: 22  RRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 78

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
                L F    +S+  NNI   +  +++ PE    L  Q F+EA+HS ++QYII S+  
Sbjct: 79  AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 137

Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            E    +++ +RE   +  +  + A  Y + L  P+        D+ F + +   Y++ E
Sbjct: 138 KEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPN--------DKNFSKVIIADYLL-E 188

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY GF     L   N+M+G ++  + I RDE  H+     ++ +I+ ENP  +  E 
Sbjct: 189 AIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 247

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
             +  +M  +A   EI + +  +    +G+   + EQY +++AN R   IGL+P+++ + 
Sbjct: 248 --EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYEGFN 305

Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +NP+  +++  D + E     NFFE  VT Y   + +  WD
Sbjct: 306 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346


>gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
           1 [Apis mellifera]
          Length = 384

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 161/348 (46%), Gaps = 28/348 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N   +  +   E + N + + +L        + P+++   W+ Y  A  + W   EV 
Sbjct: 44  VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W   N LT  E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E   LFN    +P +  KA+WAL +    S+      
Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWINHESAT----- 215

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 216 --------FPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   I ++ P        ++  +++ +A  +E  +  + +P   +G+N     QY++
Sbjct: 268 ACLMFKHI-VQKPSC------ERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIE 320

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           F+A+R   ++G + ++  +ENPF +M E I L+ + NFFE +V EYQ+
Sbjct: 321 FVADRLLVELGCKKIY-MSENPFDFM-EHISLEGKTNFFEKKVGEYQK 366


>gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16]
 gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16]
 gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus]
 gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus]
 gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus]
 gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R ++  A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           3_1_5R]
 gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
 gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
          Length = 344

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++R++   S ++  L  +K+ WA + Y +   N W+P +V +  D   +++   LT  ER
Sbjct: 17  ERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
                 L F    +S+  NN V  I  +++ PE    L  Q F+EA+HS ++QYII S+ 
Sbjct: 74  EAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESIL 132

Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
             E    +++ +R+   +  +  +  Q  Q     +       +D+ F + L   Y++ E
Sbjct: 133 PKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEET-------SDRNFAKVLVANYLL-E 184

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY GF     L   NKMVG ++  + I RDE  H+     +I +IK ENP+ + +E 
Sbjct: 185 SLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNFFQEE- 243

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
             + R M   A   EI +    +    +G+   + E Y +++AN R   IGL P++  +T
Sbjct: 244 --EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPMYDGFT 301

Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +NP+  +    D + +     NFFE  VT Y   + +  WD
Sbjct: 302 KNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 326

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 30/333 (9%)

Query: 18  NVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N+D ++ +L + +    + P+KY   W+ Y       W   E+    D   +K    L  
Sbjct: 3   NLDMNEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFKK---LNQ 59

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FF++S+++V  N+   +   +   E +     Q   E +HS  +   I 
Sbjct: 60  DEQRFIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQID 119

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++  D  E   + N    VP I AK +W L++ +  S  SF T              V  
Sbjct: 120 NIIEDVQERKDILNSIETVPCIKAKTDWMLKWVK--SEESFATR------------MVAQ 165

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ EG++F   F  I  L   N M G+    + I RDE +H ++ I + + ++       
Sbjct: 166 VISEGLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQ------- 218

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  Q+K + M  +A   E  +  E++P   +G+NA   EQY++F+A++   ++G   +F
Sbjct: 219 NKLSQEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIF 278

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           K  +NPF WM E I ++ + NFFE R T+YQ+ 
Sbjct: 279 K-VDNPFTWM-EAISIEGKTNFFEHRPTQYQRA 309


>gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
 gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
          Length = 348

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 171/357 (47%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+      P+   E  ++V  +R+LN   +++N    +KY W    Y  A NN W+P E+
Sbjct: 1   MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D + + +   L+  ER    + L F    +SL + N+   I  +++  E    L  
Sbjct: 61  NLNQDKSDYLN---LSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+E +HS ++ Y++ S+   E     +Y+       K +  L    T     +    +
Sbjct: 117 QTFQECIHSQSYSYMLDSICSPEQRNEILYQ------WKYDEHLLKRNTFIGHLYNEFLE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D++    + +   + EG++FY+GF    +L R  KM G  ++ +YI RDE+ HL    
Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +++ +++ E P L+T    Q  + M+HE    EIA+    +     GLN+   E Y++++
Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290

Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            N R   +GL  L++ Y E P    W+ +  D    K +FFE RVT Y + + ++ D
Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347


>gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula
           bermudensis HTCC2503]
 gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 340

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 151/314 (48%), Gaps = 19/314 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D   W +K  LTD ER ++ +   FF  S+  
Sbjct: 20  PFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWANK--LTDKERNLLTQIFRFFTQSDVE 77

Query: 96  VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
           V  N  +  Y  L  P E R  L   +  E +H   +  ++ ++G+ E E F+ + +  +
Sbjct: 78  VGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEA 135

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++  ++           G ++ +++ L  + VF    EG+  +  FA +++  R 
Sbjct: 136 MAAKHDYLGRF-----------GVEN-ERDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    + + ++   E   L T                LE  
Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARETGAL-TPAVADDIVDCCKTVVDLEDK 242

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V G+     + Y++ IA+ R  Q+GL P+F    +P PW+ E+++  +  
Sbjct: 243 FIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEHA 302

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY +GA
Sbjct: 303 NFFEARATEYSKGA 316


>gi|297209|emb|CAA48969.1| C8L [Variola virus]
 gi|745144|prf||2015436AF C8L gene
          Length = 333

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 28  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 85  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + YM+F+A+R   ++G + ++  T NP  +M E I L+
Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 302 GKTNFFEKRVGEYQK 316


>gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 344

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++R++   S ++  L  +K+ WA + Y +   N W+P +V +  D   +++   LT  ER
Sbjct: 17  ERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
                 L F    +S+  NN V  I  +++ PE    L  Q F+EA+HS ++QYII S+ 
Sbjct: 74  EAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESIL 132

Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
             E    +++ +R+   +  +  +  Q  Q     +       +D+ F + L   Y++ E
Sbjct: 133 PKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEEA-------SDKNFAKVLVANYLL-E 184

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY GF     L   NKMVG ++  + I RDE  H+     +I +IK ENP+ + +E 
Sbjct: 185 SLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNFFQEE- 243

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
             + R M   A   EI +    +    +G+   + E Y +++AN R   IGL P++  +T
Sbjct: 244 --EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPMYDGFT 301

Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +NP+  +    D + +     NFFE  VT Y   + +  WD
Sbjct: 302 KNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus]
 gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R+++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + YM+F+A+R   ++G + ++  T NP  +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502]
 gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis]
          Length = 296

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 29/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W+  E+ +  D   W+S   L D ER  IK  L FFA+S+ +V  N+ +   
Sbjct: 2   YKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFL 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           R +  PE R Y   Q   E +HS T+  +I     D  E   LF     + ++  KA WA
Sbjct: 59  REIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            ++              ++++ F + +  F  V EG+ F   F  I  L +   M G+  
Sbjct: 119 TKWM-------------NSERSFAERIIGFCAV-EGILFSGSFCAIFWLKKRGLMPGLTF 164

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +   +K + P         + + ++ EA  +E  +  +++P 
Sbjct: 165 SNELISRDEGLHADFACLIYKALKFKLP-------APRVQQIISEAVEVERNFLCDSLPV 217

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N+    QY++F+A+R    + +  ++  + NPF WM ++I L+ + NFFE RV E
Sbjct: 218 DLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWM-DLISLQGKTNFFEKRVGE 275

Query: 343 YQQGA 347
           YQ   
Sbjct: 276 YQMAG 280


>gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
 gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
          Length = 351

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 17/317 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
            Q  P +Y WA+E +      HW+P EVP+ +D   W  K  LTD ER ++ +   FF  
Sbjct: 8   KQYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQ 65

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E +  + E
Sbjct: 66  ADVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
              +  K +    Y Q            D D++  + L +F    EG+  +  FA +++ 
Sbjct: 125 YAEMKDKHD----YLQKFGV--------DNDEDIARTLAMFGGFTEGVQLFASFAMLMNF 172

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NKM G+ +   + +RDESLH    I + +    E   L TK  +            L
Sbjct: 173 PRFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKERQCL-TKAVKDDIADQCQTTVRL 231

Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E  +       G V G+ A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  
Sbjct: 232 EDNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGV 291

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFETR TEY + A
Sbjct: 292 EHANFFETRATEYSKAA 308


>gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 387

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 148/318 (46%), Gaps = 29/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W  Y  A  ++W   E+    D+  W   N L+D+E+  IK  L FFA S+
Sbjct: 85  VFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNEKHFIKYILAFFAGSD 141

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  NI       +   E R +   Q+  E VH  T+  +I     +  E   LF   +
Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYIKNSSEKKQLFEAIQ 201

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P I  KA WA+++              D  + F + L  F  V EG++F   F  I  
Sbjct: 202 TIPCIERKAKWAMKWF-------------DKKRPFAERLLAFACV-EGIFFSGSFCAIFW 247

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   + G+    + I RDE +H  F +++ N +K        K  Q     ++ +A  
Sbjct: 248 LKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSQNTIEEIIRDAVS 300

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+N+    +Y++++A+R   Q+G   ++  T+NPF +M E I L 
Sbjct: 301 IEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN-TKNPFDFM-ENISLD 358

Query: 331 KEKNFFETRVTEYQQGAE 348
            + NFFE RV +Y +  E
Sbjct: 359 GKTNFFEKRVGDYGKMDE 376


>gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
 gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
          Length = 346

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 164/343 (47%), Gaps = 25/343 (7%)

Query: 15  KRVNVD------DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           KRV +D        R++N +S +V     + Y WA+ KY     N W P E+ M  D+  
Sbjct: 7   KRVIMDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV-- 64

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    LT+ E+    + +G  A  +S +  +    +  ++++      ++  A +E +H
Sbjct: 65  -KQFPLLTEREQDAFLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIH 122

Query: 128 SHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H++ Y+++SL     + E+F  +R  P +  + ++         +  +    ++ + E 
Sbjct: 123 NHSYSYVLSSLVTKSKQDEVFEFWRNEPILRKRNDFV--------TNGYKAFAENPNVEN 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V+ V+ EG++FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++
Sbjct: 175 LLKSIVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEV 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E P   T E  +  +    +A  LEI +A+  +     G++      Y++F AN R H
Sbjct: 235 LSEYPEYNTPELAEFVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAH 294

Query: 306 QIGLE-PLFKYTENPFPWMS--EVIDLKKEKNFFETRVTEYQQ 345
           Q+G E P   Y  NP  W+   E +DL K  +FFE +  +Y +
Sbjct: 295 QLGFERPFAGYRTNPLRWIKAYEEVDLGK-SDFFEQKSRQYTK 336


>gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
 gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
          Length = 350

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HW+P EVP+ +D+  W SK  L D+ER ++ +   FF  S+  
Sbjct: 23  PFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWASK--LNDNERNLLTQIFRFFTQSDIE 80

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   A  E VH   +  ++ ++G+ E E F  + E  ++
Sbjct: 81  VQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEAM 139

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K N+  ++              D D +  + L +F    EG+  +  FA +++  R N
Sbjct: 140 RDKHNFMQKFGV------------DTDADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   + TK               LE  +
Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVSLEDKF 246

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
              +   G V G+     +QY+++IA+ R  Q+ L  +F   ENP PW+  ++   +  N
Sbjct: 247 IDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEHAN 306

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 307 FFEARATEYSKAA 319


>gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
 gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
          Length = 351

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W  K  L+D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 KDKHDYLQQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDE+LH   GI  +    ++     T   +     M  +   +E A+
Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIVRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +  N
Sbjct: 236 VDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRATEYSKAA 308


>gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
 gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
          Length = 339

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 156/324 (48%), Gaps = 20/324 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP+++   W  Y +A +  W   EV +  D   W +K  L + ER  IK  L FFAS++
Sbjct: 10  ILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCTK--LNERERFFIKHILAFFASAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150
           S+V  N++  +   +   E R +  +Q   E VHS  +  +I     +E    EL N + 
Sbjct: 68  SIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLNAFE 127

Query: 151 EVPSITAKANWALQYTQT------LSSP---SFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +V  +  KA WAL++T++      L +P    + T    +    L    V + + EG++F
Sbjct: 128 DVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEGVFF 187

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  +     M G+    + I RDE LH NF     N+   E   + + E     
Sbjct: 188 SGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYNEYIDERDKMSSAEILD-- 245

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             M  EA  +E  +    +P   +G+N+ +  +Y++F+A+R   ++  +P    T NPF 
Sbjct: 246 --MFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQ-QPKHFNTPNPFN 302

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345
           +M+  I L+ + NFFE RV EY++
Sbjct: 303 FMNN-ISLEGKTNFFERRVGEYKR 325


>gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
 gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W  K  L+D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQYKEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 KDKHDYLAQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDE+LH   GI  +    ++     T   +     M  +   +E A+
Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIIRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +  N
Sbjct: 236 IDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRATEYSKAA 308


>gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
 gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
          Length = 348

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 171/341 (50%), Gaps = 26/341 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +R++   S ++  L  +KY WA + Y +   N W+P ++ +  D   +K+   LTD E+ 
Sbjct: 22  RRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 78

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
                L F    +S+  NNI   +  +++ PE    L  Q F+EA+HS ++QYII S+  
Sbjct: 79  AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 137

Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            E    +++ +RE   +  +  + A  Y + L +P+        D+ F + +   Y++ E
Sbjct: 138 KEIRNSIYDKWREDKILFERNKYIAEMYQRFLENPN--------DENFSKVIVADYLL-E 188

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
            ++FY GF     L   N+M+G ++  + I RDE  H+     ++ +I+ ENP  +  E 
Sbjct: 189 AIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 247

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
             +   M  +A   EI + +  +    +G+   + EQY +++AN R   IGL+P++  + 
Sbjct: 248 --EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYDGFN 305

Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +NP+  +++  D + E     NFFE  VT Y   + +  WD
Sbjct: 306 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346


>gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
 gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
          Length = 350

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W  K  L+D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 KDKHDYLQQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDE+LH   GI  +    ++     T   +     M  +   +E A+
Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIVRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +  N
Sbjct: 236 VDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRSTEYSKAA 308


>gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
 gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
          Length = 345

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 18/317 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +++ WA+ KY     N W P E+ M  D+   K    LT+ E+    + +G  A  +S +
Sbjct: 35  VRFSWAYPKYKRMLGNFWTPFEINMSKDI---KQFPNLTEQEQDTFLKVIGLLALLDS-I 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
             +    +  +L++      ++  A +E VH+H++ Y+++S+     + E+F+ +R  P+
Sbjct: 91  QTDYAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSSIVSKNKQDEVFDYWRTEPT 150

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  + ++     Q  +        ++ + E L    V+ V+ EG++FY+GFA   +L R 
Sbjct: 151 LRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVILEGLFFYSGFAFFYNLARN 202

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KMV  +    YI RDE LH+     +  ++  ENP   T E +         A  LEI 
Sbjct: 203 QKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTAELKVFGTQAFKRAAELEIE 262

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLKK 331
           +  + +     GL     E Y++F+AN+R  Q+G + P   Y  NP  W+   + +DL K
Sbjct: 263 WGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEGYRTNPLRWIVAYQEVDLGK 322

Query: 332 EKNFFETRVTEYQQGAE 348
             +FFE +  +Y + ++
Sbjct: 323 -TDFFEQKSRQYTKTSD 338


>gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta]
          Length = 426

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 28/316 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGLTDDERLMIKRNLGFFASS 92
           + P++Y   WE Y  A  + W   EVP+   D   W  K  L  DE+  I   L FFA+S
Sbjct: 112 IFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDEK--LNSDEKYFISHVLAFFAAS 169

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           + +V  N++    + +   E R +   Q   E +HS  +  +I +   D  E   LFN  
Sbjct: 170 DGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYSLLIETYISDPKEKDFLFNAI 229

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +P +  KA WAL +    S+             F + +  F  V EG++F   FA I 
Sbjct: 230 ETLPCVGKKAKWALNWINHESAT------------FPERVIAFAAV-EGIFFSGSFAAIF 276

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L +   M G+    + I RDE LH +F   +   I I+ P        +  ++++ +A 
Sbjct: 277 WLKKRGVMPGLTFSNELISRDEGLHCDFACLIFKHI-IQKPSF------EHVKSIIMDAV 329

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  + +P   +G+N      Y++F+A+R    +G E ++  +ENPF +M+  I L
Sbjct: 330 EIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGFEKVYN-SENPFSFMN-FISL 387

Query: 330 KKEKNFFETRVTEYQQ 345
           + + NFFE +V EY++
Sbjct: 388 EGKTNFFEKKVGEYKK 403


>gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella
           lenta DSM 2243]
 gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
 gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243]
 gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 347

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L 
Sbjct: 16  TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +SL + N+  A+  +++  E    L  Q F+E VHS ++ Y++
Sbjct: 73  AAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++    +  ++   ++E   + A+     ++   L    +     D   E L  + V  
Sbjct: 132 DTICEPQERNDVLYQWKEDEHLLARN----EFIGNL----YNQFQDDKSPEALARVLVAN 183

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K E P L+
Sbjct: 184 YILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELKEEEPELF 243

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q+G EPL+
Sbjct: 244 APELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQLGFEPLY 303

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           +  E       W+S+  +    K +FFE R T Y + + L
Sbjct: 304 EGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343


>gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter
           litoralis HTCC2594]
 gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 356

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 21/315 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D   W  K  +T+ ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQK--ITEHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + E   +
Sbjct: 70  VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLEYEEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +    Y Q            D D++  + L VF    EGM  +  FA +++  R N
Sbjct: 129 KDKHD----YLQLFGV--------DTDEDIARTLAVFGGFTEGMQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE--- 272
           KM G+ +   + +RDESLH    + + ++  +     +TK  ++    +  ++  LE   
Sbjct: 177 KMKGMGQIVSWSVRDESLHCEGIVRLFHEF-VRERDCYTKAVKEDIIDICQKSVRLEDNF 235

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           I  A E  P    G+     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++  + 
Sbjct: 236 IDLAFEMGP--VSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNGVEH 293

Query: 333 KNFFETRVTEYQQGA 347
            NFFE R TEY +GA
Sbjct: 294 ANFFEQRATEYSKGA 308


>gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 351

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 165/335 (49%), Gaps = 19/335 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+  ++    L+  E+ 
Sbjct: 25  RKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LSGPEKT 81

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   + ++++  E    L  QAF+EAVHS ++ Y++ ++  
Sbjct: 82  AYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYMLDTICS 140

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            E   E+   +++   +  +  +         S             FL+     Y++ EG
Sbjct: 141 PEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALA-------FLKVCVANYIL-EG 192

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++ E P L+T +  
Sbjct: 193 IYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQKEEPQLFTPQNV 252

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +  R M+ E    EIA+ +  +     GLN+     Y+Q++ N RC  +G  P++  + E
Sbjct: 253 ELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCENLGFAPIYDGHKE 312

Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            P    W+S+  +    K +FFE + T Y + + +
Sbjct: 313 EPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 347


>gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 340

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 12/311 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D+  + +KN LTD E+ M         S +S   
Sbjct: 35  KYTWALKLWDMMEGNTWFPKEVDTTKDVIDY-NKN-LTDAEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +    +  
Sbjct: 93  NNLADNINPYITAPEINACLSRQAYEEANHSKSYAVMVEAMCDNTDLIYEMEKHDEVLRR 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D  +E L        + EG++FY+GF  I +L R  +M
Sbjct: 153 KNDYISSVYEELAG--------DVTEEKLVLAMFANQILEGIYFYSGFTAIYALARTGRM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN  K E P L+T   + K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINTTKKERPDLFTDALKAKVYEMFQKAGDLEIEWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336
                  +G      E Y+ ++ + R   +G + L+    +P  W+ +      +K NFF
Sbjct: 265 YITQNQIMGFTDDIIETYIHYLVDDRLTAVGFDKLYN-ASHPIKWVDDFSKFNDQKTNFF 323

Query: 337 ETRVTEYQQGA 347
           E  V+ Y +G+
Sbjct: 324 EGNVSNYSKGS 334


>gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor]
          Length = 321

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 146/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  IK  L FFA+S+
Sbjct: 14  VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I    S   ++  LFN   
Sbjct: 71  GIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  K+ WA ++              +    F + L  F  V EG++F   FA I  
Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +K    +          + +++EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIIKIIINEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++FIA+R   ++G + +F  T NPF +M E I L+
Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 289 GKTNFFEKRVSEYQK 303


>gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 347

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E VH
Sbjct: 66  -KDYPRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   ++  ++   +        K +  L    T     +    +  D   
Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R  
Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295

Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L P F+       W+S+  D    K +FFE R T Y +   L
Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343


>gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 347

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E VH
Sbjct: 66  -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   ++  ++   +        K +  L    T     +    +  D   
Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R  
Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295

Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L P F+       W+S+  D    K +FFE R T Y +   L
Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343


>gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
           strain Muguga]
 gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative
           [Theileria parva]
          Length = 308

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 38/313 (12%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+ Y   WE Y  A  + W   E+    D   W   + L  DER  I 
Sbjct: 10  LLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHW---HRLNKDERHFIT 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   DE 
Sbjct: 67  NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     + ++  KANWA ++                D+    +  V Y   EG+ 
Sbjct: 127 EKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVEGIL 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P       ++ 
Sbjct: 173 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP-------EEA 225

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNA-----PSC-----EQYMQFIANRRCHQIGLE 310
            + ++ EA ++E +Y  +++P   +G+N+       C      QY++F+A+R    +G+ 
Sbjct: 226 VQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQALGVR 285

Query: 311 PLFKYTENPFPWM 323
           P++  T NPF WM
Sbjct: 286 PVYNVT-NPFDWM 297


>gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos
           taurus]
 gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos
           taurus]
 gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus]
          Length = 341

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 29/294 (9%)

Query: 56  PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           P+E V +  D+  W++   L  +ER  I   L FFA+S+ +V  N+V    + +   E R
Sbjct: 55  PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 111

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++   +  
Sbjct: 112 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW---IGD 168

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            + T G +           V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 169 KAATYGER----------VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 218

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +         HL  K  +Q+ + ++  A  +E  +  E +P   +G+N   
Sbjct: 219 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 271

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 272 MKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 323


>gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
          Length = 348

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 26/344 (7%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +++++++   S ++  L  +KYGWA   Y +   N W+P ++ +  D   +   N LT+ 
Sbjct: 19  LNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDRVDY---NNLTNY 75

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+      L F    +S+  NNI   I  +++ PE    L  Q F+EA+HS ++QYII S
Sbjct: 76  EKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSIQTFQEAIHSQSYQYIIES 134

Query: 138 LGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +   E    +++ +RE   +  +  +  + Y   L +P         D+ F + +   Y+
Sbjct: 135 ILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLDNPD--------DKNFARVIVADYL 186

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E ++FY GF     L   N+M+G ++  + I RDE  H+     +I +++ ENP+ + 
Sbjct: 187 L-ESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQQMIKEVQNENPNFFD 245

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +    +   M  +A   EI++ +  +    +G+   + E Y +++AN R   IGL+PL++
Sbjct: 246 ENIIYE---MFEKAVEQEISWTNHIIGGNILGITEKTTESYTKWLANERLKSIGLQPLYE 302

Query: 315 -YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
            Y +NP+  +    D + E     NFFE  VT Y   + ++ WD
Sbjct: 303 GYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGWD 346


>gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe]
 gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small
          Length = 391

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 27/314 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  L  DER  I   L +FA+S+
Sbjct: 78  LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
            +V  N++      +  PE R     Q   E +HS T+  ++ +   +  E    F+   
Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI AKA WAL++              D D  +   L  F  V EG++F   FA I  
Sbjct: 196 TMGSIKAKAKWALRWIN------------DEDSTYAIRLVAFAAV-EGIFFSGSFASIFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++  + ++ EA  
Sbjct: 243 LKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------HLKHRPGRKLLKPIIVEAVD 295

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G +  +  T NPF +M E I L 
Sbjct: 296 IEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVT-NPFDFM-ENISLA 353

Query: 331 KEKNFFETRVTEYQ 344
            + NFFE +V++YQ
Sbjct: 354 GKTNFFEKKVSDYQ 367


>gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus
           NW-LW]
          Length = 321

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DLA WK    L+++E+  IK  L FFA+S+
Sbjct: 14  VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LSNEEQYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I    S   ++  LFN   
Sbjct: 71  GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  K+ WA ++              +    F + L  F  V EG++F   FA I  
Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +K    +       +    +++EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------EIITIIINEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++FIA+R   ++G + +F  T NPF +M E I L+
Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 289 GKTNFFEKRVSEYQK 303


>gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FF +S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGXGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R ++  A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 348

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D   W +   L D ER ++ +   FF  S+  
Sbjct: 23  PFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWAAN--LNDKERNLLTQIFRFFTQSDIE 80

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  ++
Sbjct: 81  VADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 139

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +    + QT           D + +  + L +F    EG+  +  FA +++  R N
Sbjct: 140 RDKHD----FMQTFGV--------DTEADIARTLAMFGGFTEGLQLFASFAMLMNFPRQN 187

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH +  I + +    E   + TK               LE  +
Sbjct: 188 KMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKETGVV-TKAVADDIVQCCETVVGLEDKF 246

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G + G+     +QY++FIA+ R  Q+ L  L+   ENP PW+  ++   +  N
Sbjct: 247 IDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEHAN 306

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 307 FFEARATEYSKAA 319


>gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus]
          Length = 338

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 29/294 (9%)

Query: 56  PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           P+E V +  D+  W++   L  +ER  I   L FFA+S+ +V  N+V    + +   E R
Sbjct: 52  PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 108

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++   +  
Sbjct: 109 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW---IGD 165

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            + T G +           V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 166 KAATYGER----------VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 215

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +         HL  K  +Q+ + ++  A  +E  +  E +P   +G+N   
Sbjct: 216 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 268

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 269 MKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 320


>gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
 gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
          Length = 318

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 26/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+     W+ Y  A + HW   E+ M  D   W +K  L D ER  +K  L FFA+++
Sbjct: 9   LFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWNNK--LNDKERFFLKHVLAFFAAAD 66

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  NI+  +   +   E   +  +Q   E VH+  +  ++     D  E   + N   
Sbjct: 67  VIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILNAIE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + S+  KA WA ++ ++ ++             F + +  F +V EG++F   FA I  
Sbjct: 127 HIDSVKRKATWAQKWIESQTAT------------FAERMVAFAIV-EGVFFSGSFAAIYY 173

Query: 211 LGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           +    K  + G+    + I RDE LH +F     N+   +   L     + K   M  EA
Sbjct: 174 IKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKEDKLS----ESKVLNMFKEA 229

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +E  +    +P   +G+NA S  +Y++F+A+R   ++G E  FK T NPF +M+  I 
Sbjct: 230 VDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMNN-IS 287

Query: 329 LKKEKNFFETRVTEYQQ 345
           L+ + NFFE RV EY++
Sbjct: 288 LEGKTNFFEKRVGEYKR 304


>gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus CB15]
 gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus NA1000]
 gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter
           crescentus CB15]
 gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter
           crescentus NA1000]
          Length = 347

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +DL  W  K  L D ER ++ +   FF  S+  
Sbjct: 21  PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  ++
Sbjct: 79  VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AK +    Y QT           D++ +  + L +F    EG+  +  FA +++  R N
Sbjct: 138 KAKHD----YMQTFGV--------DSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH +  I + +    E   + TK               +E  +
Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVGMEDNF 244

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G + G+     + Y++F+A+ R  Q+ L  ++   ENP PW+  ++   +  N
Sbjct: 245 IDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEHAN 304

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 305 FFEARATEYSKAA 317


>gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe 972h-]
 gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe]
          Length = 391

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 27/314 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   W+ Y  A  + W   E+ +  DL  W +K  L  DER  I   L +FA+S+
Sbjct: 78  LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
            +V  N++      +  PE R     Q   E +HS T+  ++ +   +  E    F+   
Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            + SI AKA WAL++              D D  +   L  F  V EG++F   FA I  
Sbjct: 196 TMGSIKAKAKWALRWIN------------DEDSTYAIRLVAFAAV-EGIFFSGSFASIFW 242

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + +       HL  +  ++    ++ EA  
Sbjct: 243 LKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------HLKHRPGRKVVEAIIVEAVD 295

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  Y  + +P   +G+N     QY++F+A+R    +G +  +  T NPF +M E I L 
Sbjct: 296 IEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVT-NPFDFM-ENISLA 353

Query: 331 KEKNFFETRVTEYQ 344
            + NFFE +V++YQ
Sbjct: 354 GKTNFFEKKVSDYQ 367


>gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  IK  L FF +S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++  R ++  A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
          Length = 346

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +DL  W  K  L D ER ++ +   FF  S+  
Sbjct: 21  PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  ++
Sbjct: 79  VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +    Y QT           D++ +  + L +F    EG+  +  FA +++  R N
Sbjct: 138 KDKHD----YMQTFGV--------DSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH +  I + +    E   + TK               LE  +
Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAV-TKAVADDIVDCCKHVVGLEDKF 244

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G + G+     + Y++FIA+ R  Q+ L  ++   ENP PW+  ++   +  N
Sbjct: 245 IDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEHAN 304

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 305 FFEARATEYSKAA 317


>gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus]
          Length = 374

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 25/320 (7%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + PLKY   W  Y  A  + W   EV +  D+A W+    +TD+ER  I R L FFA+S+
Sbjct: 62  IFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWEK---MTDNERFFISRVLAFFAASD 118

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E +HS  +  +I +   DE E   LFN   
Sbjct: 119 GIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYIRDEKERNILFNAIF 178

Query: 151 EVPSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           EVP I  KA WA++   QT+++P            F + +  F  V  G  F  G   I 
Sbjct: 179 EVPCIAKKAEWAVKMGLQTITAP------------FAERVIAFAAV-GGNIFSLGPVAIP 225

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             G   K  G    + + +    +  + G+  I+ +     H+  K  Q++   ++ +A 
Sbjct: 226 FSGLKKK--GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKLSQERIYYIIRDAV 282

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +E  +  E++P   +G+N     QY++++A+    ++G E + K ++NPF +M E I +
Sbjct: 283 AIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-SKNPFDFM-ENISI 340

Query: 330 KKEKNFFETRVTEYQQGAEL 349
             + NFFE +V+EYQ+   L
Sbjct: 341 DGKTNFFEKKVSEYQRPGVL 360


>gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
 gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
          Length = 347

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 161/342 (47%), Gaps = 17/342 (4%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           G+  VN+  +RM+   + ++N    +KY W    Y  A NN W+P E+ M  D+   K  
Sbjct: 14  GDTEVNL--RRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDI---KDY 68

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + ER    + L F    +S+   N+   I ++++  E    L  Q F+EAVHS ++
Sbjct: 69  PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAVHSQSY 127

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            Y++ ++         + R       K +  L    T     +       D + L  + +
Sbjct: 128 SYMLDTI------CSPVERNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTLLRVMM 181

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I ++K E P 
Sbjct: 182 ANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELKKEEPQ 241

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L++ E  +  + M+ E    EIA+ H  +     GL      +Y++++ N R   +G EP
Sbjct: 242 LFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTSLGFEP 301

Query: 312 LFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           L++ Y E P    W+ +  +    K +FFE + T Y +   L
Sbjct: 302 LYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 343


>gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp.
           8437]
          Length = 342

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N RS +V      ++ WA+  Y +   N W P E+ M +D+  W     L ++E++  
Sbjct: 18  IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQWGR---LAEEEQVAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
           K+ +G  A  +S +  +    +  +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 75  KKIIGLLAFLDS-IQTDYSSKVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133

Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           ++ E+F  ++    +  +  + ++ Y   +  P   T        FL+ + V+ V+ EG+
Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQAFVEKPEPLT--------FLRSI-VYDVILEGL 184

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GFA   +L R  KMV  +    YI RDE LH+   + +  ++  E P L T+E + 
Sbjct: 185 NFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRN 244

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318
                   A  LEI +    +   F G+       Y++F+AN+R H++G E P   Y +N
Sbjct: 245 FVTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKN 304

Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           P  W+    D+ + K +FFE +  +Y +
Sbjct: 305 PMRWVIAYQDVNRGKQDFFEGKSRQYSK 332


>gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus]
          Length = 321

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  IK  L FFA+S+
Sbjct: 14  VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I    S   ++  LFN   
Sbjct: 71  GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  K+ WA ++              +    F + L  F  V EG++F   FA I  
Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFCGSFAAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +K    +            +++EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIITIIINEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++FIA+R   ++G + +F  T NPF +M E I L+
Sbjct: 231 IEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 289 GKTNFFEKRVSEYQK 303


>gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing
           bacterium SS3/4]
          Length = 346

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 7   PLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 64

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E VH
Sbjct: 65  -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 122

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   ++  ++   +        K +  L    T     +    +  D   
Sbjct: 123 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 175 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T    Q  R M+ E    EIA+ H  +     GLN      Y++++ N R  
Sbjct: 235 QKEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 294

Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L P F+       W+S+  D    K +FFE R T Y +   L
Sbjct: 295 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 342


>gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus]
          Length = 321

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  IK  L FFA+S+
Sbjct: 14  VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I    S   ++  LFN   
Sbjct: 71  GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  K+ WA ++              +    F + L  F  V EG++F   FA I  
Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +K    +            +++EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIITIIINEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++FIA+R   ++G + +F  T NPF +M E I L+
Sbjct: 231 IEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 289 GKTNFFEKRVSEYQK 303


>gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 3 [Canis
           familiaris]
          Length = 381

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 41/315 (13%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+
Sbjct: 87  IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL++           G K+A      +  V +   EG++F   FA I  
Sbjct: 204 TMPCVKKKADWALRW----------IGDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 250

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  A  
Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIIINAVR 303

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +G+N    +QY++F+                 ENPF +M E I L+
Sbjct: 304 IEQEFLTEALPVKLIGMNCTLMKQYIEFVFR--------------VENPFDFM-ENISLE 348

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 349 GKTNFFEKRVGEYQR 363


>gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 297

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 28/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   E+ + +DL  W   + LT +ER  +   L FFA+S+ +V  N+     
Sbjct: 2   YKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
             +++PE R +   Q   E +HS T+  +I +   D  E   L N    VP +  KA+WA
Sbjct: 59  TEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++              DA      +  + +   EG++F   F  I  L +   M G+  
Sbjct: 119 LKWC-------------DAGNASFAERMIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + +++  + P       + +   ++  A  +E  +  + +P 
Sbjct: 166 SNELISRDEGLHCDFACLLYSKLVNKLP-------ESRITKIITVAVEIEKEFVSDALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N+     Y++F A+R    +G    +  T NPF WM E+I L+ + NFFE RV E
Sbjct: 219 ELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVGE 276

Query: 343 YQQGA 347
           Y +  
Sbjct: 277 YAKSG 281


>gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
          Length = 347

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E   +V  +RM    + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E VH
Sbjct: 66  -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   ++  ++   +        K +  L    T     +    +  D   
Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R  
Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295

Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L P F+       W+S+  D    K +FFE R T Y +   L
Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343


>gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
 gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
          Length = 352

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +  ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +  D+  
Sbjct: 13  PLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV-- 70

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    LT  ER    + L F    +SL + N+   I  +++  E    L  QAF+E+VH
Sbjct: 71  -KDYPRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVH 128

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++       E+   ++    + A+  +                 +DA + F
Sbjct: 129 SQSYSYMLDTICDPAKRNEILYQWKTDEPLLARNTFIGNLYNEFQE------RRDA-RTF 181

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L+ L   +++ EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 182 LRVLMANFIL-EGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILEL 240

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T E  +  R ML E    EIA+    +     GL     E Y++++ N R  
Sbjct: 241 QKEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWS 300

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L++ Y   P    W+S+  +    K +FFE + T Y +   L
Sbjct: 301 SLGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTAL 348


>gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
           wittichii RW1]
 gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1]
          Length = 350

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W  K  LTD ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++             +T   D D++  + L +F    EG+  +  FA +++  R N
Sbjct: 129 KDKHDY------------LSTFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDE+LH   GI  +    ++     T   +     M  +   +E A+
Sbjct: 177 KMKGMGQIVTWSIRDETLHCE-GIVRLFHAFVKERDCLTASVKDDILDMCQKTVRIEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++  +  N
Sbjct: 236 IDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRATEYSKAA 308


>gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit
           [Cryptosporidium muris RN66]
 gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Cryptosporidium muris RN66]
          Length = 346

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 29/327 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L++ + ++Q++  +    W  Y     + W   E+ +  D+  W+S   L + E+  IK
Sbjct: 30  VLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEKHFIK 86

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGL 140
             L FFA+S+ +V  N+ +   + +   E R Y   Q   E +HS T+  +I    S   
Sbjct: 87  YVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYISDVK 146

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D   LF     +P++  KA WA ++                ++ F + +  F  V EG+ 
Sbjct: 147 DRQMLFEAISHLPAVKTKAKWATKWMNN-------------NRSFAERIIGFCAV-EGIL 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE +H +FG  +   +    P+   +E    
Sbjct: 193 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYGRVQE---- 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E A+  +++P   +G+N+    QY++F+A+R    + +  ++  T NPF
Sbjct: 249 ---IIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT-NPF 304

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM ++I L+ + NFFE RV EYQ   
Sbjct: 305 DWM-DLISLQGKTNFFEKRVAEYQMAG 330


>gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 347

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 158/336 (47%), Gaps = 15/336 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    +KY WA + Y  A NN W+P E+ +  D    K    L   ER 
Sbjct: 21  RRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT---KDYPRLDKAERT 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+  ++  +++  E    L  QAF+E VHS ++ Y++ ++  
Sbjct: 78  AYDKILSFLVFLDSLQSNNLP-SLCEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +    +  D   L    +   + EG++
Sbjct: 137 PEQRNDILYQ------WKTDEHLLRRNTFIGNCYNEFHEKQDLYALMKTCIANFILEGIY 190

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P ++T E  + 
Sbjct: 191 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKELKKEEPEMFTPEKVKV 250

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318
              M+ E    EIA+    +     GLNA     Y+ ++ N R H +G + L++  +   
Sbjct: 251 YEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWHSLGFDYLYEDNQKEP 310

Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
               W+++  D    K +FFE + T Y +   ++ D
Sbjct: 311 EDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346


>gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 347

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 31/349 (8%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + ++ ++M+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L+
Sbjct: 16  IELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI---KDYRKLS 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +E+    + L F    +S+   N+   I  +++  E    L  QA++EA+HS ++ YI+
Sbjct: 73  KEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEAIHSQSYGYIL 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +              + S   + N   Q+       +      D   EF  D   F +V
Sbjct: 132 DT--------------ICSPEERTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFNLV 177

Query: 196 --------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
                    EG++FY+GF    SLGR  KM G  ++ +YI RDE+ HL     ++ ++K 
Sbjct: 178 KTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLELKK 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E  H++T+E     R M+ +    EI +A   +     GL+    E Y++++ N RC  +
Sbjct: 238 EEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCKGL 297

Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           G + +++ Y + P    W+SE  D    K +FFE +V+ Y +   ++ D
Sbjct: 298 GFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346


>gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           denticola ATCC 35405]
 gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           denticola ATCC 35405]
          Length = 351

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 19/335 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+  ++    L+  E+ 
Sbjct: 25  RKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LSIPEKT 81

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   + ++++  E    L  QAF+EAVHS ++ Y++ ++  
Sbjct: 82  AYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYMLDTICS 140

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            E   E+   +++   +  +  +         S             FL+     Y++ EG
Sbjct: 141 PEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALA-------FLKVCVANYIL-EG 192

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++ E P L+T +  
Sbjct: 193 IYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQKEEPQLFTPQNV 252

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +  R M+ E    EIA+    +     GLN+     Y+Q++ N RC  +G  P++  + E
Sbjct: 253 ELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCENLGFAPIYDGHRE 312

Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            P    W S+  +    K +FFE + T Y + + +
Sbjct: 313 EPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAM 347


>gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
 gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
          Length = 349

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVP+ +D+  W S   L D+ER ++ +   FF  ++  
Sbjct: 24  PFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQADIE 81

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L      E +H   +  ++ ++G+ E E F  + E  ++
Sbjct: 82  VQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D+D +  + L +F    EG+  +  FA +++  R N
Sbjct: 141 RDKHDYMGQFG------------VDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPRQN 188

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   + TK               +E  +
Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVNMEDRF 247

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   +  N
Sbjct: 248 IDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEHAN 307

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 308 FFEARATEYSKAA 320


>gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
 gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
          Length = 346

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 25/346 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L 
Sbjct: 15  IDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI---KDYRLLN 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + E+    + L F    +SL   N+   +  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 72  EHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEAVHSQSYSYML 130

Query: 136 TSLG--LDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S+   ++  E+   ++    +  +  +   QY   L         KD+   F++ +   
Sbjct: 131 DSICSPIERDEILYQWKYDEHLLKRNEFIGEQYNAFLEH-------KDSFH-FMKTVIAN 182

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I +++ E P L
Sbjct: 183 YIL-EGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILELQKEEPDL 241

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T +  +  R M+      EIA+    +     GL       Y+ ++ N R   +  EPL
Sbjct: 242 FTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQALNFEPL 301

Query: 313 FK-YTENP--FPWM---SEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+ Y + P    W+   S   D+K +  FFE R + Y + + L+ D
Sbjct: 302 FEDYMQEPESMKWVSIYSNANDIKTD--FFEARSSAYAKSSALEDD 345


>gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. novicida
           U112]
 gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta
           subunit [Francisella novicida U112]
 gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549]
 gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida Fx1]
          Length = 410

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct]
          Length = 445

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 128 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 185

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 186 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 244

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 245 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 290

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 291 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 350

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 351 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 410

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 411 TNFFENRVTEYEVAGLTGSWD 431


>gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate
           reductase beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 410

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548]
 gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548]
          Length = 410

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
          Length = 347

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 169/349 (48%), Gaps = 21/349 (6%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V  +R++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L   ER    + L F    +S+ + N+   +  +++  E    L  Q+F+E VH
Sbjct: 66  -KDYRQLPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123

Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE- 184
           S ++ Y++ ++    +  E+   +++   + A+         T     +    ++  +E 
Sbjct: 124 SQSYSYMLDTIASPDERQEIIFQWKDDEHLLAR--------NTFIGDLYNEFQQEQSREN 175

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FL+ L   Y++ EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL    +++  
Sbjct: 176 FLRVLIANYIL-EGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRD 234

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E ++  R M+ E    EIA+    +     GLN    E Y+ ++ N R 
Sbjct: 235 LRAEEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARA 294

Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
             IGL  L++ + E P    W+S+  +    K +F E R T Y +   L
Sbjct: 295 ESIGLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTAL 343


>gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica LVS]
 gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase
           beta subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 410

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
 gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
          Length = 323

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++G  W  Y  A  + W   EV +  DL  WK+   L  +ER  I   L FFA S+
Sbjct: 16  IFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEERRFISYILAFFAVSD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +  PE R +   Q   E +HS  +  +I +   D  E   LF+  R
Sbjct: 73  GIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTYIDDNNEKKRLFSSMR 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  K+ WAL++    S+P               +  V +   EG++F   FA I  
Sbjct: 133 TMDCVRKKSEWALKWIND-SAP-------------YGERLVAFAAVEGIFFSGSFAAIFW 178

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         +L  K  Q +   ++  A  
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGLHCDFACLLFTN------YLSHKPSQDRVYEIIDSAVS 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +    +G+N+ S  +Y++F+++R    +G    +   ENPF +M E I L+
Sbjct: 233 VETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYN-VENPFSFM-ENISLE 290

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+ YQ+
Sbjct: 291 GKANFFEKRVSNYQK 305


>gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp.
           K31]
 gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31]
          Length = 346

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA E +      HWMP EVP+ +DL  W  K  L D ER ++ +   FF  S+  
Sbjct: 20  PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDIE 77

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  ++
Sbjct: 78  VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQAM 136

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  ++              + + +  + L +F    EG+  +  FA +++  R N
Sbjct: 137 RDKHDFMQKFG------------VETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 184

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   + T E             ++E A+
Sbjct: 185 KMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETKCV-TPEVAADIVECCKSVVIMEDAF 243

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G + G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   +  N
Sbjct: 244 IDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHAN 303

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 304 FFEARATEYSKAA 316


>gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta
           subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 410

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 410

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D11]
          Length = 348

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 37/356 (10%)

Query: 16  RVNVDDKRMLNARSD---------------VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +V VD K++ N   D               +  L  ++Y WA + Y +   N W+P +V 
Sbjct: 2   KVVVDRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q
Sbjct: 62  LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
            F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           
Sbjct: 118 TFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------- 170

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           + +D+ F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+   
Sbjct: 171 EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLF 229

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             ++ +IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y ++
Sbjct: 230 RSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKW 286

Query: 299 IANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
           +AN R   +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 287 LANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342


>gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 347

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 164/341 (48%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +++  + ++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +K    L 
Sbjct: 16  IDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDYKI---LD 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + E+    + L F    +S+    +   +  +++  E    L  Q+F+E++HS ++ YI+
Sbjct: 73  EAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHSQSYSYIL 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+ +   T      L       +  +     D  +  L    +   +
Sbjct: 132 DTICSPEERTEILYQYINDKT------LLERNKYITDQYAGFLNDKTKGNLMHALIANYI 185

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E P L+T+
Sbjct: 186 LEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLKKEQPELFTE 245

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E  ++ R +L      EIA+    +     GL +   E Y++++ N R   +G EPL++ 
Sbjct: 246 EKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATNLGFEPLYEG 305

Query: 316 TEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            +       W+++  D+   K +FFE +VT Y + A ++ D
Sbjct: 306 YDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346


>gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 348

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP EVPM +D+  W +   L D ER ++ +   FF  ++  
Sbjct: 24  PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWAAN--LNDGERNLLTQIFRFFTQADIE 81

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  ++
Sbjct: 82  VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++  Q+              D+D +  + L +F    EG+  +  FA +++  R +
Sbjct: 141 KDKHDYMGQFG------------VDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQS 188

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   + TK               +E  +
Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVIEMEDKF 247

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     + Y++FIA+ R  Q+ L  ++  TENP PW+  ++   +  N
Sbjct: 248 IDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEHAN 307

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 308 FFEARATEYSKAA 320


>gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           vulgatus ATCC 8482]
 gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
 gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           vulgatus ATCC 8482]
 gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
          Length = 349

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D    K   
Sbjct: 15  EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS ++ 
Sbjct: 72  HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           Y++ S+   E     +Y+       K +  L    T     +    +  D   L    + 
Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDGHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L
Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G  PL
Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLGFGPL 304

Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             Y EN        W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV]
 gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV]
          Length = 338

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 31/343 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L+P   GEK  +   + +L        + P++Y   W  Y  A  + W   EV +  D  
Sbjct: 6   LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    L D+ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E V
Sbjct: 65  DWER---LNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +      E   L N    +P +  KA WAL++   ++S   T G +    
Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRW---IASKEATFGER---- 174

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
                  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +  
Sbjct: 175 ------LVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 228

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR- 302
                  HL  +    + R ++ +A  +E  +  E +P   +GLN  +  QY++F+A+R 
Sbjct: 229 -------HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRL 281

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               IG +     T NP  +M+ +I L+ + NFFE +V EYQ+
Sbjct: 282 LVDLIGTKHY--NTANPLDFMT-LISLEGKTNFFEKKVGEYQK 321


>gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
 gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
          Length = 347

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 175/351 (49%), Gaps = 19/351 (5%)

Query: 9   PIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V ++RM+N   +++N    ++Y W  + Y  A NN W+P E+ +  D + 
Sbjct: 8   PLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDKSD 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L++ ER    + L F    +SL + N+   I ++++  E    L  Q F+E +H
Sbjct: 68  YPK---LSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQECIH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++    +  ++   ++    +  +     ++   L +      +KD+   F
Sbjct: 124 SQSYSYMLDTICNPTERNDILYQWKTDEHLLRRN----EFIGNLYNEFVEKQSKDS---F 176

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L+ + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL F  +++ ++
Sbjct: 177 LR-VCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+ +    +   M+ +    EIA+    +     GLN    E Y++++ N R  
Sbjct: 236 KKEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYR 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            +GL  L++ Y + P    W+S+  D    K +FFE R T Y +   ++ D
Sbjct: 296 SLGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346


>gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
          Length = 344

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 22/320 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y WA + Y +   N W+P +V +  D   +++   LT  ER      L F    +S+ 
Sbjct: 34  VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154
            NNI   I  H++ PE    L  Q F+EA+HS ++QYII S+   +    +++ +R+   
Sbjct: 91  TNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKV 149

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  + ++  +  Q           + +D+ F + +   Y++ E ++FY GF     L   
Sbjct: 150 LFERNSFIAKIYQDFID-------EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASR 201

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKMVG ++  + I RDE  H+     ++ +IK + P+ ++ E      +M   A   EIA
Sbjct: 202 NKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIA 258

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE- 332
           +    +    +G+ + + E Y +++AN R   +GLEPLF  + +NP+  +    D + E 
Sbjct: 259 WTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEG 318

Query: 333 ---KNFFETRVTEYQQGAEL 349
               NFFE  VT Y   + +
Sbjct: 319 NVKSNFFEGTVTSYNMSSSI 338


>gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 345

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 150/313 (47%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W  K  L+D ER ++ +   FF  ++  
Sbjct: 12  PFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   +
Sbjct: 70  VQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKEM 128

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++           +F  G+   DQ+  + L +     EG+  +  FA +++  R N
Sbjct: 129 KDKHDYL---------ATFDVGS---DQDIARTLAMMGGFTEGLQLFASFAMLMNFPRFN 176

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH   GI  +     +     TK+ +     +      +E A+
Sbjct: 177 KMKGMGQIVSWSVRDESLHCE-GIIRLFHTFCQERQCLTKQVKDDILNICQRTVRIEDAF 235

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     ++Y+++IA+ R  Q+GL P++   E+P PW++ +++  +  N
Sbjct: 236 IDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVEHAN 295

Query: 335 FFETRVTEYQQGA 347
           FFETR TEY + A
Sbjct: 296 FFETRSTEYSKAA 308


>gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
 gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
          Length = 345

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 163/328 (49%), Gaps = 19/328 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +LN +S +V     +++ WA+  Y +   N W P E+ M  D   + +   LT+ E+   
Sbjct: 21  ILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
           K+ +G  A  +S V  +  +    +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 78  KKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKA 136

Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            + E+F  ++    +  +  + +  Y + + +P+  T        FL+ + V+ V+ EG+
Sbjct: 137 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKT--------FLESI-VYDVILEGL 187

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GFA   +L R  KMV  +    YI RDE LH+    ++  ++ +E P L T+E + 
Sbjct: 188 NFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKT 247

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318
             +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G+E P  +   N
Sbjct: 248 FVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHN 307

Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           P  W+    D+   K +FFE +  +Y +
Sbjct: 308 PMKWIRAYEDVNSGKSDFFEQKSRQYAK 335


>gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida 3523]
          Length = 410

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      + P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++    
Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405


>gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
 gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
          Length = 348

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 163/343 (47%), Gaps = 19/343 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+N  + ++N    LKYGW  + Y  A NN W+P E+ +  DL   K    L 
Sbjct: 17  TDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEINLGQDL---KDYPKLE 73

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
              +  + + L F    +S+   N+   I   ++  E    L  QAF+EAVHS ++ Y++
Sbjct: 74  PAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTIQAFQEAVHSQSYSYML 132

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            S    +   E+   ++E P +  +     ++   L +      T     + ++ L   Y
Sbjct: 133 DSFCSPDQRTEILYQWKEDPRLLKRN----EFIGGLYNEFIEQRTP---VQLMKTLIANY 185

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL     +I +++ E P L+
Sbjct: 186 IL-EGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFRSMILELRKEEPQLF 244

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E +Q  R ML +    EI +    +     GLN      Y++++ N R   I LE L+
Sbjct: 245 TPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYLGNLRAKAIHLEILY 304

Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
              E       W+S+  +    K +FFE R + Y + + LK D
Sbjct: 305 PGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347


>gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
 gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           D4]
 gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           dorei 5_1_36/D4]
 gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
          Length = 349

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D    K   
Sbjct: 15  EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS ++ 
Sbjct: 72  HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           Y++ S+   E     +Y+       K +  L    T     +    +  D   L    + 
Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L
Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G  PL
Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLGFGPL 304

Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             Y EN        W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus]
 gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96]
 gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS]
          Length = 319

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 143/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D+  W   N LT +E+  IK  L FFA+S+
Sbjct: 14  IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYFIKHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WA ++                D     +  + +   EG++F   FA I  
Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL     ++   +++ +A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVISIITDAVS 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N    + Y++F+A+R   ++G + ++    NPF +M E I L+
Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-NPFDFM-ENISLE 287

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV EYQ+
Sbjct: 288 GKTNFFEKRVGEYQK 302


>gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
 gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
          Length = 344

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 22/320 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y WA + Y +   N W+P +V +  D   +++   LT  ER      L F    +S+ 
Sbjct: 34  VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154
            NNI   I  H++ PE    L  Q F+EA+HS ++QYII S+   +    +++ +R+   
Sbjct: 91  TNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKV 149

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  + ++  +  Q           + +D+ F + +   Y++ E ++FY GF     L   
Sbjct: 150 LFERNSFIAKIYQDFID-------EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASR 201

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKMVG ++  + I RDE  H+     ++ +IK + P+ ++ E      +M   A   EIA
Sbjct: 202 NKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIA 258

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE- 332
           +    +    +G+ + + E Y +++AN R   +GLEPLF  + +NP+  +    D + E 
Sbjct: 259 WTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEG 318

Query: 333 ---KNFFETRVTEYQQGAEL 349
               NFFE  VT Y   + +
Sbjct: 319 NVKSNFFEGTVTSYNMSSSI 338


>gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
 gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
          Length = 352

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 163/340 (47%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +  D+   K    L+
Sbjct: 21  LDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV---KDYPRLS 77

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + ER    + L F    +SL + N+   I  +++  E    L  QAF+E+VHS ++ Y++
Sbjct: 78  EAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVHSQSYSYML 136

Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++       E+   ++    + A+  +                 +DA + FL+ L   Y
Sbjct: 137 DTICDPAKRNEILYQWKTDKHLLARNTFIGDLYNEFQE------HRDA-RTFLRVLMANY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I +++ E P L+
Sbjct: 190 IL-EGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSIILELQKEEPQLF 248

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + E     R ML E    EIA+    +     GL     E Y++++ N R   +G   L+
Sbjct: 249 SNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSSLGFGQLY 308

Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           + Y   P    W+S+  +    K +FFE + T Y +   L
Sbjct: 309 EGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTAL 348


>gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
 gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
          Length = 347

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 19/335 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    L+Y W    Y  A NN W+P E+ +  D+   K    LT++ER 
Sbjct: 21  RRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDI---KDYPNLTENERT 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139
              + L F    +S+   N+   I  +++  E    L  Q F+E VHS ++ Y++ S+  
Sbjct: 78  AYNKILSFLVFLDSIQTANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYMLDSICS 136

Query: 140 -LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            ++  ++   ++    +  +         T     +    +  D   L  + +   + EG
Sbjct: 137 PVERNDILYQWKNDAHLLRR--------NTFIGDLYNEFQEKKDDFTLLKVMMANYILEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T E  
Sbjct: 189 IYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMKKELPELFTPEHI 248

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTE 317
           +  + ML E    EIA+ H  +     GL      +Y+Q++ N R   +G +P++   T+
Sbjct: 249 EILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTNLGFDPIYPDQTQ 308

Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            P    W+S+  +    K +FFE + T Y +   L
Sbjct: 309 EPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTAL 343


>gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
 gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
          Length = 340

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 13/331 (3%)

Query: 19  VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++D+++ N     +      KY WA + +     N W P EV    D   ++    LT  
Sbjct: 15  LNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVA 72

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ +
Sbjct: 73  EKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEA 132

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   ++ M +   ++  K ++     + L+      G  D ++  L    V   + E
Sbjct: 133 ICENTDLIYEMEKHDETLREKNDFISSIYEELA------GEVDDNKLLLA--MVANQILE 184

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E   L+    
Sbjct: 185 GVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERADLFNDTN 244

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             K   M  +A  LEI +         +G      E+Y+ ++ ++R   I L+ ++   +
Sbjct: 245 VSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDKIYN-VK 303

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347
           +P  W+ +      +K NFFE++VT Y +G+
Sbjct: 304 HPIKWVDDFSKFNDQKSNFFESKVTNYSKGS 334


>gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis]
          Length = 289

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 144/293 (49%), Gaps = 29/293 (9%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DL  W +   LT +E+  I   L FFA+S+ +V  N+     + +  PE R + 
Sbjct: 3   EVDLSQDLYQWVN---LTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFY 59

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +HS  +  ++ +   D  E   LFN    +P +  KA WA+++ Q  SS SF
Sbjct: 60  GFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQ--SSGSF 117

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                        +  V +   EG++F   F  I  L +   M G+    + I RDE LH
Sbjct: 118 A------------ERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 165

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   + + +K       +K  +++ + ++ +A  +E  +  E +    VG+NA    Q
Sbjct: 166 CDFACLLYSLLK-------SKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMSQ 218

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Y++FIA+R    +G   ++ + ENPF WM ++I L+ + NFFE RV +YQ+ +
Sbjct: 219 YIKFIADRLLVALGHGKMY-HVENPFDWM-DLISLQGKTNFFERRVGDYQKAS 269


>gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus]
          Length = 321

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 144/315 (45%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A  + W   EV +  DL+ WK    L ++E+  IK  L FFA+S+
Sbjct: 14  VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWKK---LNNEEQYFIKNILAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +      E   LFN   
Sbjct: 71  GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEYLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  I  K+ WA ++              +    F + L  F  V EG++F   FA I  
Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +   +K    +       +    ++ EA  
Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------EIITIIIKEAVS 230

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + NPF +M E I L+
Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSINPFDFM-ENISLE 288

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE RV+EYQ+
Sbjct: 289 GKTNFFEKRVSEYQK 303


>gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
          Length = 347

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 163/348 (46%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +   + + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  DL  
Sbjct: 8   PLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLKD 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K+   LT  ER    + L F    +S+   N+   I ++++  E    L  Q F+EAVH
Sbjct: 68  YKN---LTAAERTAYDKILSFLVFLDSIQTANLP-CIAQYITANEVNLCLTIQGFQEAVH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ S+   ++   +   ++E   +  +         T     +    +  D   
Sbjct: 124 SQSYSYMLDSICSPVERDRILYQWKEDEHLLRR--------NTFIGNLYNEFQEKKDDVT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++
Sbjct: 176 LLRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T +     R+ML E    EI +    +     GL       Y++++ N R  
Sbjct: 236 RKEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWS 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   L++ Y E P    W+++  +    K +FFE + T Y + A +
Sbjct: 296 GLGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAI 343


>gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 344

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 168/350 (48%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 351

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 167/347 (48%), Gaps = 23/347 (6%)

Query: 11  QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +AG+  + +  +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+  ++
Sbjct: 16  EAGD--IELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYR 73

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           +   L+  E+    + L F    +S+   N+   I ++++  E    L  QAF+EAVHS 
Sbjct: 74  N---LSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQEAVHSQ 129

Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFL 186
           ++ Y++ ++   E   ++   +++   + A+  +    Y +     S     K A   + 
Sbjct: 130 SYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANY- 188

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   V EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++
Sbjct: 189 --------VLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQ 240

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P ++T    +  R M+ E    EI +    +     GLN      Y++++ N RC  
Sbjct: 241 KEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCEN 300

Query: 307 IGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           +G EPL+   +       W+S+  +    K +FFE + T Y + + +
Sbjct: 301 LGFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 347


>gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 349

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D    K   
Sbjct: 15  EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS ++ 
Sbjct: 72  HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           Y++ S+   E     +Y+       K +  L    T     +    +  D   L    + 
Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L
Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G  PL
Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSSLGFGPL 304

Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             Y EN        W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
 gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
          Length = 349

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 165/349 (47%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V ++R++N   +++N    +KY W  + Y  A NN W+P E+ +  D + 
Sbjct: 10  PLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEINLNQDKSD 69

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L+  E+    + L F    +SL + N+   I ++++  E    L  Q F+E +H
Sbjct: 70  YPR---LSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQTFQECIH 125

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   E     +Y+       K +  L          +       D++   
Sbjct: 126 SQSYSYMLDSICSPEQRNDILYQ------WKTDEHLLKRNEFIGELYNEFVAKQDKQSFL 179

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   + EG++FY+GF    +L R  KM G  ++ +YI RDES HL    +++ +++ 
Sbjct: 180 RVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRNILVELQK 239

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T E  Q  R M++     EIA+ H  +     GLN      Y++++ N R   +
Sbjct: 240 EEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLGNTRFATL 299

Query: 308 GLEPLF-KYTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           G   L+ +Y E P    W+ +  D    K +FFE R + Y +   ++ D
Sbjct: 300 GFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348


>gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 330

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 31/316 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA WA ++    S  SF T              V +   EG++F   FA I  
Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         H +          ++ EA  
Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+
Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQ 309

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE R   YQ+G
Sbjct: 310 GKTNFFERREANYQKG 325


>gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 346

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 21/344 (6%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    +R++N  + ++N    LKY W  + Y  A NN W+P E+ +  D+  ++    L 
Sbjct: 15  IETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDYRE---LD 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +SL    I   +  +++  E    L  Q ++E++HS ++ YI+
Sbjct: 72  KAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHSQSYSYIL 130

Query: 136 TSLGLDEG--ELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            ++   E   E+   Y++   +  +  +   QY     + +           F++ L   
Sbjct: 131 DTICSPEEREEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDN--------FMKALIAN 182

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF+   +LGR  KM G   + +YI RDE+ HL     +I ++K E P +
Sbjct: 183 YIL-EGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKEEPEI 241

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           +T E  +K + ML +    EIA+    +     GLN    E Y+ ++ N R   +G   L
Sbjct: 242 FTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLGFGNL 301

Query: 313 F-KYTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           F +  + P    W+SE  D  + K +FFE R + Y + + ++ D
Sbjct: 302 FDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345


>gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           pseudofirmus OF4]
 gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           pseudofirmus OF4]
          Length = 344

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 156/314 (49%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +++ WA+  Y +   N W P E+ M  D    K    LT+ E+   K+ +G  A  +S V
Sbjct: 34  VRFSWAYPLYKNMLANFWTPFEINMSHDT---KQFQNLTETEQEAFKKIIGLLAFLDS-V 89

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154
             +  L +  +L++      +   +F+E VH+ ++ Y+++SL     + E+F+ ++  P 
Sbjct: 90  QTDYSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFDYWKNDPV 149

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + +  Y +  ++P+  T         L    V+ V+ EG+ FY+GFA   +L R
Sbjct: 150 LKERNEFIVDGYEEFANNPTPDT---------LARSIVYDVILEGVNFYSGFAFFYNLAR 200

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KMV  +    YI RDE LH+    +V  ++  E+P L  +E +   +  L  A  LE+
Sbjct: 201 HQKMVSTSTMINYINRDEQLHVYLFTNVFKELLEEHPELNNREMESFVKQSLTTAVELEL 260

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
            + +  + +   G+ +     Y++FIAN+R  Q+G + +F ++  N F W+    D+   
Sbjct: 261 KWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQLGYDHIFPEHRTNVFKWIKAYEDVNAA 320

Query: 333 K-NFFETRVTEYQQ 345
           K +FFE +  +Y +
Sbjct: 321 KSDFFEQKSRQYAK 334


>gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
 gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
          Length = 311

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 145/306 (47%), Gaps = 28/306 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL   K    L D+E+ 
Sbjct: 29  NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 86  FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF+    +P++  KA WA ++    +S                +  V     E
Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 191

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P       
Sbjct: 192 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 244

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F + +
Sbjct: 245 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF-HAK 303

Query: 318 NPFPWM 323
           NPF WM
Sbjct: 304 NPFNWM 309


>gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus
           salmonis]
          Length = 335

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y  A    W   EV +  DL  W     L  DE+  I   L FFA+S+
Sbjct: 28  MFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWAK---LNKDEKHFISNVLAFFAASD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      +   E R +   Q   E +HS  +  +I +   D+ E   LFN   
Sbjct: 85  GIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDTYIEDDKEKDKLFNSIL 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA WAL++          TG    D+ F   L  F  V EG++F   FA +  
Sbjct: 145 TIECVKKKAEWALRW---------ITG----DKPFATRLVAFAAV-EGIFFSGSFASLFW 190

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE  H +F   + +       HL  K   +    ++ E   
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGSHTDFACLLYS-------HLENKLDPKYVLQIIKEGVE 243

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  +++P G +G+NA   + Y++F+A+     + +E  + +T+NPF +M   I + 
Sbjct: 244 IEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY-HTKNPFNFMDN-ISMT 301

Query: 331 KEKNFFETRVTEYQQ 345
            + NFF+ RV+EYQ+
Sbjct: 302 GKTNFFDKRVSEYQR 316


>gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes
           bacterium D7]
 gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. D7]
          Length = 346

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 15/341 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  ++    L+
Sbjct: 15  IDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIRDYRL---LS 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + ER    + L F    +SL   N+   I  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 72  EAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAVHSQSYSYML 130

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            S+           R+      K +  L          +    +  D   L    +   +
Sbjct: 131 DSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHLMKTIMANYI 184

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I +++ E P L+T 
Sbjct: 185 LEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQKEEPTLFTP 244

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E  +  R ML      EIA+    +     GL       Y+ ++ N R   +  EPL++ 
Sbjct: 245 EKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFSLNFEPLYEG 304

Query: 316 TEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            E       W+S   +    K +FFE + T Y + + ++ D
Sbjct: 305 FETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345


>gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1]
 gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1]
          Length = 328

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 150/325 (46%), Gaps = 26/325 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+  ++ +   P++    W  Y +A   +W   EV +  D+  W+ +  L  DER  I 
Sbjct: 9   LLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHFIS 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+++ LV  N+     + +   E   +   Q   E VH+  +  +I +L  D  
Sbjct: 67  HVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKDVK 126

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WA ++T             D +  F + L  F  V EG++
Sbjct: 127 EQDRLFNAVERMPCIAKKAEWAKRWTH------------DTNASFGERLVAFAAV-EGIF 173

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L     M G+    ++I RDE LH +F   +         H+  K   ++
Sbjct: 174 FSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFKD------HILGKPGYER 227

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  E +P   +G+N      Y++F+A+R    +G  P   + +NPF
Sbjct: 228 VSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGF-PKRYHVKNPF 286

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
            +M E I ++ + NFFE  V++Y++
Sbjct: 287 GFM-ESISMEGKTNFFEKNVSQYKK 310


>gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 152/300 (50%), Gaps = 25/300 (8%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           +P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ +  NN  +  Y ++  P   
Sbjct: 1   LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-IEVNNCYMKHYSNIFKP-TE 56

Query: 115 QYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
             ++  AF   E +H   + Y++ ++G+ E E +  + +   +  K ++  ++ +     
Sbjct: 57  VCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQRFEEC---- 111

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                 K+  +   + L VF    EG+  +  FA +L+  R  KM G+ +   + +RDE+
Sbjct: 112 -----RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDET 166

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-----GL 287
           LH    I + N    EN  +W    +Q+    L+EA  + ++   E +   F      GL
Sbjct: 167 LHTESIIRLFNTFIQENYEIWDDSLKQE----LYEACRIIVSLEDEFINLAFACGDVEGL 222

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           ++   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  NFFE RVTEY + A
Sbjct: 223 SSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAA 282


>gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 410

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      ++P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ANPNTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++    
Sbjct: 325 KFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGNWD 405


>gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 348

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 146/315 (46%), Gaps = 28/315 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W  Y  A  + W   EV +  D + W+    L D+ER  IK  L FFA+S+
Sbjct: 42  IFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWER---LNDNERHFIKHVLAFFAASD 98

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E VHS  +  +I +      E   L N   
Sbjct: 99  GIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEMYSTLIDTYVRSSEEKLRLLNAIE 158

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA WAL++           G + A  E L    V +   EG++F   FA I  
Sbjct: 159 TMPCVKEKAEWALRW---------IAGREAAFGERL----VAFAAVEGVFFSGSFAAIFW 205

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  +    + R ++ +A  
Sbjct: 206 LKKRGLMPGLTFSNELISRDEGLHCDFACLLFK-------HLVQRPSAARVREIVTDAVA 258

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E +P   +GLN  +  QY++F+A+R   ++     +  T NP  +M+ +I L+
Sbjct: 259 IEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLELVGAKHYN-TPNPLDFMN-LISLE 316

Query: 331 KEKNFFETRVTEYQQ 345
            + NFFE +V EYQ+
Sbjct: 317 GKTNFFEKKVGEYQK 331


>gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 410

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
           P  Y WA +  +     HW+  E+ + +D+  WK  NG +T  E+  I   L  F  S+ 
Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
           +T K ++ +      ++P+   G           L +   VF EG+  +  FA +L+  R
Sbjct: 219 MTDKIDFMMD-----ANPNTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE 
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + GL A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++    
Sbjct: 325 KFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADH 384

Query: 333 KNFFETRVTEYQ-QGAELKWD 352
            NFFE RVTEY+  G    WD
Sbjct: 385 TNFFENRVTEYEVAGLTGNWD 405


>gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
 gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
          Length = 349

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 155/338 (45%), Gaps = 19/338 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    ++Y WA + Y  A NN W+P E+ +  D    K    L   ER 
Sbjct: 23  RRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINLAQDT---KDYPRLDKAERA 79

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+   I  +++  E    L  QAF+E VHS ++ Y++ ++  
Sbjct: 80  AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 138

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +       D+  L    V   + EG++
Sbjct: 139 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFHDKRDKFSLMKTCVANFILEGIY 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    +++ ++K E P ++T E  + 
Sbjct: 193 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNILQELKKEEPKMFTPEKVKV 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318
              M+ E    EIA+    +     GLN      Y+ ++ N R H +G   L  Y EN  
Sbjct: 253 YEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGNLRWHSLGFGYL--YDENIQ 310

Query: 319 ---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
                 W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 311 EPENMKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 31/316 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA WA ++    S  SF T              V +   EG++F   FA I  
Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         H +          ++ EA  
Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+
Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQ 309

Query: 331 KEKNFFETRVTEYQQG 346
            + NFFE R   YQ+G
Sbjct: 310 GKTNFFERREANYQKG 325


>gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis 638R]
 gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis 638R]
          Length = 349

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 19/357 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  N   +P    E R+    ++M+   + ++N    ++Y W  + Y  A NN W+P E+
Sbjct: 6   LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEI 61

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    LT  ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 62  NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ S+   E     +Y+       K +  L    T     +    +
Sbjct: 118 QAFQECVHSQSYSYMLDSICSPEERNDILYQ------WKTDEHLLRRNTFIGNCYNEFQE 171

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D   L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 172 NRDGFALMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 231

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I ++K E P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+
Sbjct: 232 NIILELKKEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFL 291

Query: 300 ANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            N R   +G  PL+   +       W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 292 GNLRWSSLGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 346

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 19/343 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V +  ++M+N  + ++N    +KY W  + Y +  NN W+P E+ M  D+  +++   L 
Sbjct: 15  VELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDIKDYRN---LD 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +S+   N+   I  + +  E    L  QA++EA+HS ++ YI+
Sbjct: 72  FHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQEAIHSQSYSYIL 130

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++   E   E+   +R+   +  +     ++   + +      TK+    +++ +   Y
Sbjct: 131 DTIASPEERTEILYQWRDDEHLLNRN----KFIGNIYNDFVENHTKET---YMKTVMGNY 183

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I ++K E   L+
Sbjct: 184 IL-EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQELKKEEVELF 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+E   + + ML E    EI +    +     G+ A   + Y++++ N R   IG   LF
Sbjct: 243 TEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRSRSIGFGNLF 302

Query: 314 KYT---ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
                  N   W+SE  +  + K +FFE +V+ Y + +  + D
Sbjct: 303 DRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345


>gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
          Length = 344

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 348

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 8   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 68  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 177 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 235

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 236 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 292

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 293 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342


>gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
          Length = 350

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 142/313 (45%), Gaps = 17/313 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HWMP E+P+ +DL  W SK  L D ER ++ +   FF  S+  
Sbjct: 24  PFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWASK--LNDRERNLLTQIFRFFTQSDVE 81

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F  + +  ++
Sbjct: 82  VNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLDYQAM 140

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +    Y Q+           D   +  + L +F    EG+  +  FA +++  R N
Sbjct: 141 RDKHD----YMQSFGV--------DTHADICRTLAMFGGFTEGLQLFASFAMLMNFPRHN 188

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   + T+               LE  +
Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TQAVADDIVDCCKTVVGLEDKF 247

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
                  G V G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   +  N
Sbjct: 248 IDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGVEHAN 307

Query: 335 FFETRVTEYQQGA 347
           FFE R TEY + A
Sbjct: 308 FFEARATEYSKAA 320


>gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 348

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 8   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 68  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 177 FAKIIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 235

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 236 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 292

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 293 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342


>gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
 gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
          Length = 344

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis NCTC 9343]
 gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis NCTC 9343]
          Length = 349

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 14/328 (4%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    ++Y W  + Y  A NN W+P E+ +  D    K    LT  ER    + L F
Sbjct: 31  TNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLTPAERTAYDKILSF 87

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
               +SL +NN+   +  +++  E    L  QAF+E VHS ++ Y++ S+   E     +
Sbjct: 88  LVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICSPEERNDIL 146

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           Y+       K +  L    T     +    ++ D   L    +   + EG++FY+GF   
Sbjct: 147 YQ------WKTDEHLLRRNTFIGNCYNEFQENRDGFALMKTLIANYILEGIYFYSGFMFF 200

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
            +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T +  +    M+ E 
Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFTPDKVKVYEEMMREG 260

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSE 325
              EIA+    +     GLN      Y+ F+ N R   +G  PL+   +       W+S+
Sbjct: 261 VKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLGYTPLYEDNRKEPESMHWVSQ 320

Query: 326 VIDLKKEK-NFFETRVTEYQQGAELKWD 352
             +    K +FFE + T Y +   L+ D
Sbjct: 321 YSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
 gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
          Length = 353

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 19/355 (5%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A N    P+      ++V  ++M+N  + ++N    +KY WA + Y  A NN W+P E+ 
Sbjct: 7   AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+   K    L+  E+    + L F    +S+   N+   I  +++  E    L  Q
Sbjct: 67  LNQDV---KDYRKLSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQ 122

Query: 121 AFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF+EAVHS ++ Y++ S+    +   +   +++ P + A+  +            +    
Sbjct: 123 AFQEAVHSQSYSYMLDSICSPQERNAILYQWKDDPHLLARNKFI--------GDLYNDFM 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +  D E L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL   
Sbjct: 175 EHRDGEHLIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLF 234

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             ++ ++K E P L+T E  +  + ML      E+ +A   + +   GL       Y+ +
Sbjct: 235 RSILLELKKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHY 294

Query: 299 IANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           + N R + +G   L+  Y + P    W+S   +    K +FFE + T Y + + L
Sbjct: 295 LGNLRSNALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSAL 349


>gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 296

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 28/305 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   E+ +  DL  W   + L+ +ER  +   L FFA+S+ +V  N+     
Sbjct: 2   YKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNFA 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
             + + E R +   Q   E +HS T+  +I +   D  E   L +    VP +  KA+WA
Sbjct: 59  TEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           LQ+              DA+     +  V +   EG++F   F  I  L +   M G+  
Sbjct: 119 LQWC-------------DANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + ++++ + P     E       ++ +A  +E  +  + +P 
Sbjct: 166 SNELISRDEGLHCDFACLLYSKLQNQLPVARIVE-------IITDAVTIEQEFVQDALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N+    +Y++F A+R    +G    +K   NPF WM E+I L+ + NFFE RV E
Sbjct: 219 ELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVGE 276

Query: 343 YQQGA 347
           Y +  
Sbjct: 277 YAKSG 281


>gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
 gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
          Length = 344

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPL+  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
          Length = 350

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 17/334 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL   K  + L   ER 
Sbjct: 24  KRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL---KDYSKLLPAERT 80

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +S+   N+   +  +++  E    L  Q F+EAVHS ++ Y++ ++  
Sbjct: 81  AYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEAVHSQSYSYMLDTICS 139

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYVVFEGM 199
            E       R+      K +  L          +     D    +F++ L   Y++ EG+
Sbjct: 140 PEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQFMKVLVANYIL-EGI 192

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY+GF    +LGR  KM G A++ +YI RDE+ HL     ++ ++K E P ++T +   
Sbjct: 193 YFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLELKKEAPEMFTPDKVD 252

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318
             R M+ +    EI +    +     GL +     Y++++ N R   +G +PL+  Y + 
Sbjct: 253 VYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTTSLGFDPLYDGYDKE 312

Query: 319 P--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           P    W+S+  +    K +FFE R T Y + + L
Sbjct: 313 PPSMSWVSQYSNANMIKTDFFEARSTAYAKSSAL 346


>gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 392

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 159/340 (46%), Gaps = 28/340 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           SP   G+K  +  D+ +L        + P++Y   W+ Y  A  + W   E+ +  DL  
Sbjct: 55  SPYYLGKKE-DEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHD 113

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W +K  L  DER  I   L +FA+S+ +V  N++      +   E R     Q   E +H
Sbjct: 114 WDNK--LNKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIH 171

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  ++ +   D  E    F+    + SI AKA WAL++ +            D +  
Sbjct: 172 SETYSLLLDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIE------------DPESI 219

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +   L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F   + + 
Sbjct: 220 YAVRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFSH 278

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K    H   K+  ++   ++ EA  +E  Y  + +P   +G+N     QY++F+A+R  
Sbjct: 279 LK----HRPGKKVVER---IIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLL 331

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             +G E  +  T NPF +M E I L  + NFFE +V++YQ
Sbjct: 332 LSLGNEKYYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQ 369


>gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a]
          Length = 342

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 28/322 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +NQ    ++   +  Y       W   E+ + +D+A W   +  ++DE+  I   L FFA
Sbjct: 32  LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
           S + +V  N+ +     +  P+ R +   Q   E++H  T+  +I +   D  +   M R
Sbjct: 89  SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148

Query: 151 ---EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E+P IT KA W              T   D +   L +  V +   EG+ F   F  
Sbjct: 149 SIQEMPIITKKAQW-------------VTAWMDPEVASLAERLVAFTCVEGVQFSGAFCA 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  L +  +  G+      I RDE LH    + + N +K   P     +       +  +
Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPVAVVHD-------IFTD 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  LE  +  E++P   +G+NA +   Y++++++    ++G   LF  T+NPF WM+ +I
Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306

Query: 328 DLKKEKNFFETRVTEYQQGAEL 349
            ++ + NFFE RV EY +   +
Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSM 328


>gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 348

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 8   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 68  DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 123

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 177 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 235

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 236 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERL 292

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPL+  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 293 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342


>gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
 gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
          Length = 368

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 19/348 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +    V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D   
Sbjct: 29  PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDR-- 86

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L+  ER    + L F    +S+   N+  A+  +++  E    L  Q F+EAVH
Sbjct: 87  -KDYPLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144

Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y++ ++   +   ++   ++  P + A+         T     +    KD     
Sbjct: 145 SQSYSYMLDTICEPQTRNDVLYQWKSDPRLLAR--------NTFIGDLYNEFQKDKSPYA 196

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                V   + EG++FY+GF    +LGR +KM G +++ +YI RDE+ HL    ++I ++
Sbjct: 197 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILEL 256

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+++E  +  RTM+ E    EIA+    +     GL       Y+ ++ N RC 
Sbjct: 257 EKEEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCA 316

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            +G   +++ + + P    W+++  +    K +FFE + T Y + + L
Sbjct: 317 SLGWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSAL 364


>gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]
          Length = 360

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 50/339 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+  DL  W S   +TD ER ++ +   FF  S+  V 
Sbjct: 36  RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWASDR-VTDSERALLTQIFRFFTQSDIEVG 94

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           +N  L  Y  +  P   Q ++  AF   E VH   +  ++ +LG+ + E F  +R    +
Sbjct: 95  DNY-LKRYIPIFQPLTVQMMM-AAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEM 151

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AKA++  ++              D   +  + L +F    EGM  +  FA +L+  R N
Sbjct: 152 RAKADYMHEFGV------------DTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHN 199

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH   GI       I+  H W +E    +R++  +  ++++A 
Sbjct: 200 KMNGMGQIVSWSVRDESLHCE-GI-------IKLFHEWNRETGAVTRSVRDD--IVDVAK 249

Query: 276 AHETMPKGFV----------GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-------- 317
               + + FV          G+       Y++++A+ R  Q+ + P+F + E        
Sbjct: 250 TMVKLEENFVDLAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQ 309

Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
              +P PW+ E+++  +  NFFE R TEY + A    WD
Sbjct: 310 LKAHPLPWLVEILNGVEHANFFEQRATEYSKAASRGSWD 348


>gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 347

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 19/357 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  N   +P+   + R+    +RM+   + ++N    ++Y W  + Y  A NN W+P E+
Sbjct: 4   LKRNALFNPMGDTDLRL----RRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEI 59

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL + N+  ++  +++  E    L  
Sbjct: 60  NLTQDT---KDYPKLDKAERTAYDKILSFLVFLDSLQSTNLP-SLTEYVTANEVNLCLHI 115

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ ++   E     +Y+       K +  L    T     +    +
Sbjct: 116 QAFQECVHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLKRNTFIGDLYNEFHE 169

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 170 KRDRYTLVKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 229

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I ++K E P L+T +       M+ E    EIA+    +     GLNA   + Y++++
Sbjct: 230 NIIQELKKEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYL 289

Query: 300 ANRRCHQIGLEPLFKYTENP---FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            N R H +G + L++          W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 290 GNLRWHSLGFDYLYEDNRTEPENMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 344

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPL+  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis YCH46]
 gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis YCH46]
          Length = 349

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 19/357 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  N   +P    E R+    ++M+   + ++N    ++Y W  + Y    NN W+P E+
Sbjct: 6   LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEI 61

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    LT  ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 62  NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ S+   E     +Y+       K +  L    T     +    +
Sbjct: 118 QAFQECVHSQSYSYMLDSICSPEERNDILYQ------WKTDEHLLRRNTFIGNCYNEFQE 171

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D   L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 172 NRDGFALMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 231

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I ++K E P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+
Sbjct: 232 NIILELKKEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFL 291

Query: 300 ANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            N R   +G  PL+   +       W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 292 GNLRWSSLGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
          Length = 352

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +      HW+P EVP+ +D   W SK  L+D ER ++ +   FF  S+  
Sbjct: 23  PFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWASK--LSDSERNLLTQIFRFFTQSDIE 80

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  ++
Sbjct: 81  VQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEAM 139

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K ++              T   D + + L+ L +F    EG+  +  FA +++  R N
Sbjct: 140 RDKHDF------------MGTFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH    I + +    E   L TK  Q            +E  +
Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKAL-TKSVQDDIIDCCKTVVTMEDKF 246

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333
                  G V G+     + Y+++IA+ R  Q+ L  ++    ENP PW+  ++   +  
Sbjct: 247 IDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVEHA 306

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 307 NFFEARATEYSKAA 320


>gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
 gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
          Length = 344

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPL+  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 347

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 29/342 (8%)

Query: 20  DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  D+   K    L+  E
Sbjct: 19  NSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDV---KDYRNLSAAE 75

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R    + L F    +S+   N+   I ++++  E    L  Q F+EAVHS ++ Y++ S+
Sbjct: 76  REAFDKILSFLVFLDSIQTANLP-CIGQYITANEVNLCLTIQGFQEAVHSQSYSYMLDSI 134

Query: 139 G--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-- 194
              ++   +   ++E   +             L   +F     +  QE   D+ +  V  
Sbjct: 135 CSPVERDRILYQWKEDGHL-------------LKRNTFIGNLYNEFQERKDDITLLRVMM 181

Query: 195 ---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++K E P 
Sbjct: 182 ANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELKKEEPG 241

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L+T +  +    ML E    EI +    +     GL       Y++++ N R   +G EP
Sbjct: 242 LFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTGLGFEP 301

Query: 312 LFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           L++ Y + P    W+++  +    K +FFE + T Y + A +
Sbjct: 302 LYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAI 343


>gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 353

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 159/346 (45%), Gaps = 15/346 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +   +V  +RM+   + ++N    LKY WA E Y  A NN W+P E+ +  D+  
Sbjct: 14  PLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEINLSQDI-- 71

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L+  ER    + L F    +S+   N+   +  +++  E    L  Q F+E VH
Sbjct: 72  -KDYPNLSPAERKAYDKILSFLVFLDSIQTANLP-CVGEYITANEVNLCLNIQTFQECVH 129

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +  +  +Y+       K +  L    T     +       D   L 
Sbjct: 130 SQSYSYMLDTICSPDERMDILYQ------WKTDEHLLKRNTFIGECYNEFQVKKDARTLV 183

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   V EG++F++GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ 
Sbjct: 184 KVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIIELRK 243

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E+P L+      + + +L EA   EI +A   +     GLN      Y++++ N R   +
Sbjct: 244 EHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYLGNLRWKSL 303

Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           G  P++   E       W+S+  +    K +FFE R T Y +   L
Sbjct: 304 GYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTAL 349


>gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 347

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 158/338 (46%), Gaps = 15/338 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+   + ++N    ++YGW  + Y  A NN W+P E+ +  D    K    L 
Sbjct: 16  TDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDR---KDYGELL 72

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +S+ + N+   I  +++  E    L  Q F+E VHS ++ Y++
Sbjct: 73  GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 131

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+       K +  L    T     +       D   L  + +   +
Sbjct: 132 DTICSPEKRNEILYQ------WKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMANYI 185

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K E P L+TK
Sbjct: 186 LEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLKEEEPELFTK 245

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314
           E  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   +G + ++  
Sbjct: 246 ENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTGLGFDVVYPG 305

Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           Y + P    W+S   +    K +FFE + T Y +   L
Sbjct: 306 YEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTAL 343


>gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
          Length = 349

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 18/330 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    + Y W  + Y  A NN W+P E+ +  D    K    L   ER    + L F
Sbjct: 31  TNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLDKAERTAYDKILSF 87

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
               +SL +NN+   I  +++  E    L  QAF+E VHS ++ Y++ S+   E     +
Sbjct: 88  LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICSPEERNDIL 146

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           Y+       K +  L    T     +    +  D   L    +   + EG++FY+GF   
Sbjct: 147 YQ------WKTDEHLLKRNTFIGNCYNEFQESQDSFTLMKTLIANYILEGIYFYSGFMFF 200

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
            +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T +  +    M+ E 
Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFTSDRVKVYEAMMREG 260

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-----PFPWM 323
              EI +    +     GLN    E Y+ ++ N R   +G  PL  Y +N        W+
Sbjct: 261 VKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTSLGFTPL--YEDNLKEPESMRWV 318

Query: 324 SEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           S+  +    K +FFE + T Y +   L+ D
Sbjct: 319 SQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
 gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
          Length = 349

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 15/333 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L   ER 
Sbjct: 23  RRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPQAERT 79

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+   I  +++  E    L  Q F+E +HS ++ Y++ ++  
Sbjct: 80  AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECIHSQSYSYMLDTICS 138

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +    +  D+  L    +   + EG++
Sbjct: 139 PEERNDILYQ------WKTDEHLLKRNTFIGDCYNEFQEKRDKFALMKACMANFILEGIY 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T E    
Sbjct: 193 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIVELKQEQPELFTPERIAV 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318
              M+ E    EIA+    +     GL       Y+ ++ N R   +G   L+++ +N  
Sbjct: 253 YEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGNLRWRSLGFGNLYEHNQNEP 312

Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
               W+++  +  K K +FFE + T Y +   L
Sbjct: 313 DDMQWVAQYSNANKVKTDFFEAKSTAYAKSTAL 345


>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera]
          Length = 312

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 29/291 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  D+  W+S   L++ E+  I   L FFA+S+ +V  N+     
Sbjct: 2   YKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARFL 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
             +  PE R +   Q   E +HS  +  ++ +   D  E   LFN    +  +  KA WA
Sbjct: 59  HDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L + Q+                F + L  F  V EG++F   F  I  L +   M G+  
Sbjct: 119 LDWIQS-------------STLFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 164

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + + ++ + P  W     QK   ++HEA  +E  +  E +P 
Sbjct: 165 SNELISRDEGLHCDFACLLYSLLQKQLP--W-----QKVHHIVHEAVEIETQFVCEALPC 217

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
             +G+NA    QY++F+A+R    +G E  +   ENPF WM E I L+  +
Sbjct: 218 ALIGMNATLMSQYIKFVADRLLVALGYERKYN-VENPFDWM-EFISLQCSR 266


>gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 326

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 156/327 (47%), Gaps = 31/327 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+ + +   L P+++   W  Y  A ++ W   EV +  D+  WK    L   E+  I 
Sbjct: 10  LLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWKK---LNPKEKHFIS 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +   D G
Sbjct: 67  NVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD-G 125

Query: 144 E----LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           E    LFN  + +PS+  KA+WA+++ +            D + +F   L  F  V EG+
Sbjct: 126 EQKKFLFNAVKTIPSVKDKADWAIKWIE------------DKNSDFATRLVAFACV-EGI 172

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   FA I  L +   M G+    + I RDE LH  F   +  +        + K+  +
Sbjct: 173 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRR--------YLKQKCK 224

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           + + ++ +A  +E  +  E++P   +G+N     +Y++F+A+     +  E ++ +T NP
Sbjct: 225 RVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPNP 283

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG 346
           F +M E I L  + NFF+ R ++YQ+ 
Sbjct: 284 FDFM-ENISLVGKTNFFDKRESQYQKA 309


>gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 360

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 146/314 (46%), Gaps = 35/314 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++    W+ Y  A  + W   E+ +  DL  W     LTD+ER  IK  L FFA+S+
Sbjct: 66  LFPIQEHDVWQMYKKAEASFWTAEELDLVHDLNDWAK---LTDNERHFIKHVLAFFAASD 122

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D  E  ++ R + 
Sbjct: 123 GIVNENLAMNFSNEVQIPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIE 182

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +I                       K +++  L      +   EG++F   F  +  L +
Sbjct: 183 TIPC------------------VQKKHSNERLLA-----FAAVEGIFFSGSFCSVFWLKK 219

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G++   + I RDE +H +F   + +++  + P       + +   ++ +A  +E 
Sbjct: 220 RGLMPGLSFSNEMISRDEGMHTDFACLMYSKLVNKLP-------ESRVHEIIRDAVAIEH 272

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            +  +++P   +G+N+    QY++F+A+R  + +G+  ++   +NPF WM ++I L+ + 
Sbjct: 273 EFVCDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYN-VKNPFDWM-DMISLQGKT 330

Query: 334 NFFETRVTEYQQGA 347
           NFFE RV EY +  
Sbjct: 331 NFFEKRVGEYSKAG 344


>gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 344

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 14  EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +K  N +    LNAR       +++  L  ++  WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           + +D+ 
Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +
Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R 
Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349
             +GLEPLF  + +NP+  +    D + E     NFFE  VT Y   + +
Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338


>gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
 gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
          Length = 359

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 15/338 (4%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+   + ++N    ++YGW    Y  A NN W+P E+ +  D    K    L 
Sbjct: 28  TDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDR---KDYGELL 84

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER    + L F    +S+ + N+   I  +++  E    L  Q F+E VHS ++ Y++
Sbjct: 85  GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 143

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++   E     +Y+       K +  L    T     +       D   L  + +   +
Sbjct: 144 DTICSPEKRNEILYQ------WKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMANYI 197

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K E P L+TK
Sbjct: 198 LEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLKEEEPELFTK 257

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314
           E  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   +G + ++  
Sbjct: 258 ENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTGLGFDVVYPG 317

Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           Y + P    W+S   +    K +FFE + T Y +   L
Sbjct: 318 YEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTAL 355


>gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
 gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
          Length = 345

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 165/332 (49%), Gaps = 19/332 (5%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++N  S +V     +++ WA+  Y +   N W P E+ M +D+   K  + L   ER  
Sbjct: 20  RIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDV---KQYDKLEPKEREA 76

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             + +G  A  +S +  +  + + R+L++      +   +F+E VH+ ++ Y+++SL   
Sbjct: 77  FDKIIGLLAFLDS-IQTDYSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSSLTTK 135

Query: 142 --EGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             + E+F  ++    +  + ++ A  Y   +S+P+  T        FL  + V+ ++ EG
Sbjct: 136 AKQDEIFEYWKHDKVLRERNDFIAEGYEAFVSNPTPET--------FLHSI-VYDIILEG 186

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + FY+GF+   +L R  KMV  +    YI RDE  H+    ++  ++  E P L +++  
Sbjct: 187 LNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNSEKTH 246

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTE 317
           +  +    +   LEI +A   +     G++    E Y++F+AN+R +++G+E P   Y  
Sbjct: 247 RFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFEGYRN 306

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAE 348
           NP  W+    D+   K +FFE +  +Y + ++
Sbjct: 307 NPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSD 338


>gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
 gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
          Length = 344

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 23/324 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+ WA + Y +   N W+P +V +  D   +++   LT  ER      L F    +S+ 
Sbjct: 34  VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154
            NN+   I  +++ PE    L  Q F+EA+HS ++QYII S+   E    +++ +R+   
Sbjct: 91  TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKV 149

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +  Q  Q     +       +DQ F + L   Y++ E ++FY GF     L   
Sbjct: 150 LFERNRFIAQIYQDFIEET-------SDQNFAKVLIANYLL-ESLYFYNGFNFFYLLASR 201

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKMVG ++  + I RDE  H+     +I +IK           +++ R M   A   EI 
Sbjct: 202 NKMVGTSDVIRLINRDELSHVVLFQKIIREIK---AENHNFFEEEEIRAMFRTAVEQEIL 258

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE- 332
           +    +    +G+   + E Y +++AN R   IGL P++ ++T+NP+  +    D + + 
Sbjct: 259 WTEHIIGNRILGITTETTEAYTKWLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDG 318

Query: 333 ---KNFFETRVTEYQQGAELK-WD 352
               NFFE  VT Y   + +  WD
Sbjct: 319 NVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii]
          Length = 309

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 39/311 (12%)

Query: 43  WEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           W+K++      W   E+ +   DL  W   N LT DER   K  LGFFAS+  +V++N+ 
Sbjct: 18  WKKHVRC---FWTKDEINITSSDLREW---NDLTPDERQFFKCILGFFASTNIIVSDNLA 71

Query: 102 LAIYRHLSNP----ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PS 154
           L   R L++P    E R +   Q   E +HS T+  ++T+   +E E   +   +   P 
Sbjct: 72  L---RFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNELLYSIISWPC 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K+ WA+++              D    + + L  F VV EG+ F + FA I  + ++
Sbjct: 129 LNVKSRWAVKWMN------------DEFATYAERLVAFAVV-EGIMFSSSFAGIYWIKQS 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             + G+ +  ++I RDE LH  F   +  +IK   P         K R ++ E   +E  
Sbjct: 176 GLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLP-------DTKVRKIVLEGCEVEKL 228

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +    + K  +G+N+   E Y+ F+ +     +G E  F    NPFP+M   I ++ + N
Sbjct: 229 FVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFG-VNNPFPFMDN-ISMQGKTN 286

Query: 335 FFETRVTEYQQ 345
           FFE RVTEY +
Sbjct: 287 FFERRVTEYTR 297


>gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 151

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGF 88
           ALWK+  GLTDDER ++ RNLGF
Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGF 151


>gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D12]
          Length = 348

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 23/324 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+ WA + Y +   N W+P +V +  D   +++   LT  ER      L F    +S+ 
Sbjct: 38  VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154
            NN+   I  +++ PE    L  Q F+EA+HS ++QYII S+   E    +++ +R+   
Sbjct: 95  TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKV 153

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +  Q  Q     +       +DQ F + L   Y++ E ++FY GF     L   
Sbjct: 154 LFERNRFIAQIYQDFIEET-------SDQNFAKVLIANYLL-ESLYFYNGFNFFYLLASR 205

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKMVG ++  + I RDE  H+     +I +IK           +++ R M   A   EI 
Sbjct: 206 NKMVGTSDVIRLINRDELSHVVLFQKIIREIK---AENHNFFEEEEIRAMFRTAVEQEIL 262

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE- 332
           +    +    +G+   + E Y +++AN R   IGL P++ ++T+NP+  +    D + + 
Sbjct: 263 WTEHIIGNRILGITTETTEAYTKWLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDG 322

Query: 333 ---KNFFETRVTEYQQGAELK-WD 352
               NFFE  VT Y   + +  WD
Sbjct: 323 NVKSNFFEGTVTSYNMSSSIDGWD 346


>gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 347

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 15/336 (4%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L + 
Sbjct: 18  VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV---KDYRRLHEA 74

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+    + L F    +S+   N+   +  +++  E    L  QAF+EAVHS ++ Y++ S
Sbjct: 75  EKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAFQEAVHSQSYSYMLDS 133

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +   +     +Y+       K +  L          +    +  D   L    +   + E
Sbjct: 134 ICSPQERNDILYQ------WKDDERLLNRNKFIGDLYNDFQEHKDGLHLMKTMMANYILE 187

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++ E PHL+T+E 
Sbjct: 188 GIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQKEEPHLFTEEL 247

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q+ + ML      EI +    +     GL       Y+ ++ N R + +G   L++  E
Sbjct: 248 IQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNLRSNSLGFGSLYEGFE 307

Query: 318 N---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           +      W+S   +    K +FFE R + Y + + L
Sbjct: 308 SEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343


>gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
 gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
          Length = 348

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 164/355 (46%), Gaps = 21/355 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  NT  +P  +G+  V++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 5   LKRNTLFNP--SGD--VDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E     +Y+       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T+E  +    M+ E    EIA+    +     GLN+     Y++++
Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            N R   +G   L+    K  EN   W+ +  +    K +FFE R T Y +   L
Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPEN-MKWVGQYSNANMVKTDFFEARSTAYAKSTAL 344


>gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 348

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 15/336 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    ++Y WA + Y  A NN W+P E+ +  D    K    L   ER 
Sbjct: 22  RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL + N+  ++   ++  E    L  QAF+E VHS ++ Y++ ++  
Sbjct: 79  AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +     + D+  L    +   + EG++
Sbjct: 138 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFYANNDKASLMKTLIANYILEGIY 191

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I+++K E P  +T E  + 
Sbjct: 192 FYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFRNIIHEMKKEEPEYFTPEKVKL 251

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ E    EIA+    +     GLN      Y++++ N R   +G   LF+   E P
Sbjct: 252 YEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYLGNMRWRSLGFGNLFEDNIEEP 311

Query: 320 --FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
               W+S+  +    K +FFE + T Y +   ++ D
Sbjct: 312 ENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 349

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 147/328 (44%), Gaps = 14/328 (4%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    ++Y W  + Y  A NN W+P E+ +  D    K    L + ER    + L F
Sbjct: 31  TNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDEAERTAYDKILSF 87

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
               +SL +NN+   I  +++  E    L  QAF+E VHS ++ Y++ ++   E     +
Sbjct: 88  LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICSPEKRNDIL 146

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           Y+       K +  L    T     +    +  D   L    +   + EG++FY+GF   
Sbjct: 147 YQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIANYILEGIYFYSGFMFF 200

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
            +L R  KM G A++ +YI RDE+ HL     +I ++K E P L+T +  Q    M+ E 
Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRSIILELKKEEPELFTPDKVQIYENMMREG 260

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
              EI +    +     GLN      Y+ ++ N R   +G  PL+++       M  V+ 
Sbjct: 261 VKQEIEWGQYVIGDNIQGLNRQMIADYIHYLGNLRWSSLGNPPLYEHNRKEPESMHWVLQ 320

Query: 329 LKK----EKNFFETRVTEYQQGAELKWD 352
                  + +FFE + T Y +   L+ D
Sbjct: 321 YSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
 gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
          Length = 347

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 15/336 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D    K    L   ER+
Sbjct: 21  RRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDKAERV 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+   +  +++  E    L  QAF+E VHS ++ Y++ S+  
Sbjct: 78  AYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICS 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +    +  +   L    +   + EG++
Sbjct: 137 PEERNDILYQ------WKTDEHLLKRNTFIGNCYNEFQESQNGFALVKTLIANYILEGIY 190

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+  +  + 
Sbjct: 191 FYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFVPDKVKV 250

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318
              M+ E    EIA+    +     GL+    E Y+ ++ N R   +G  PL++  +   
Sbjct: 251 YEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGNLRWKSLGYAPLYEDNQTEP 310

Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
               W+S+  +    K +FFE + T Y +   L+ D
Sbjct: 311 ESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 347

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 15/333 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   S ++N    ++Y W  + Y  A NN W+P E+ +  D+   K    L   ER 
Sbjct: 21  RRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPAAERK 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+   I  +++  E    L  Q F+E VHS ++ Y++ ++  
Sbjct: 78  AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDTICS 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +     + D+  L    V   + EG++
Sbjct: 137 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFQANRDKFCLMKACVANFILEGIY 190

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T E    
Sbjct: 191 FYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVELKQEEPDLFTPEKVAV 250

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317
              M+ E    EIA+    +     GL       Y++++ N R   +G + LF+  +   
Sbjct: 251 YEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWKSLGFDYLFEDNQAEP 310

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
               W+++  +    K +FFE + T Y +   L
Sbjct: 311 ADMQWVAQYSNANMVKTDFFEAKSTAYAKSTAL 343


>gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
 gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
          Length = 352

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 23/332 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++  L  +KY WA + Y     N W+P  V +  D+  +K    LTDDER      L F
Sbjct: 34  TNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQDYKE---LTDDERQAYDEILSF 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELF 146
               +S+   NI   I  ++  PE    L   A++EA+HS ++ Y I S+   E   E++
Sbjct: 91  LVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVVPAEKREEVY 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
             +++ P +  +  + A  Y + L  P+          E   ++ +   + EG++FY GF
Sbjct: 150 YWWKKDPILFERNKYIADIYQKFLEEPTL---------ENYGEVLIGNYLLEGLYFYNGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L   N M G A+  +YI RDE  H+      +  +  E    +    + K   M 
Sbjct: 201 MFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTDEGFKKYLT--KDKIYDMF 258

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             A   E  ++ + +    +G+N  S E Y  +IAN+R   +GLEP+F    NP+  +  
Sbjct: 259 RIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLKALGLEPIFPDRGNPYEHLER 318

Query: 326 VIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           + D   E     NFFE  VT Y Q   ++ WD
Sbjct: 319 IADTGGEANVKANFFEATVTSYNQANAVEGWD 350


>gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
 gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
          Length = 347

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 15/336 (4%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L + 
Sbjct: 18  VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV---KDYRRLREA 74

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+    + L F    +S+   N+   +  +++  E    L  QAF+EAVHS ++ Y++ S
Sbjct: 75  EKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYMLDS 133

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +   +     +Y+       K +  L          +       D   L    +   + E
Sbjct: 134 ICSPQERTDILYQ------WKDDERLLNRNKFIGDLYNDFQTHRDGRHLMKTMMANYILE 187

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++ E P L+T+E 
Sbjct: 188 GIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQKEEPQLFTEEL 247

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            ++ + ML      EI +    +     GL       Y+ ++ N R + +G   L+   E
Sbjct: 248 IEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNLRSNSLGFGSLYDGFE 307

Query: 318 N---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           N      W+S   +    K +FFE R + Y + + L
Sbjct: 308 NEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343


>gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 144/323 (44%), Gaps = 26/323 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA++ +      HW+P E+PM DD+  W  K  +   E+ ++ +   FF  ++  
Sbjct: 12  PFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHK--ICGTEKNLLTQIFRFFTQADVE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V +  +         PE    L   A  E +H   + +++ ++G+ E E     +     
Sbjct: 70  VHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETEYLAFTK----- 124

Query: 156 TAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
                    Y Q      +    K D   E  + L V+    EG+  +  FA +L+  R 
Sbjct: 125 ---------YKQMKEKCEYLKAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRTMLH-EATL 270
           NKM G+ +   Y +RDE+LH N    +     +EN         E ++    M+H E   
Sbjct: 176 NKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLENNIDKFKLEAEIREICNAMVHHEDAF 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +++A+    +     GL A   ++Y+++IAN R  Q+G   +++   NP  W+  V++  
Sbjct: 236 IDLAFEMGDVE----GLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNTV 291

Query: 331 KEKNFFETRVTEYQQGA-ELKWD 352
           +  NFFE + TEY + A +  WD
Sbjct: 292 EHTNFFENKATEYSKAATKGTWD 314


>gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 348

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 21/355 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  NT  +P    E R+    +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 5   LKRNTLFNPSGDIELRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDF---KDYPRLEKAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E     +Y+       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T E  +    M+ E    EIA+    +     GLNA     Y++++
Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            N R   +G   L+    K  EN   W+ +  +    K +FFE + T Y +   L
Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344


>gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 313

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   +E Y  A    W   EV +  D   ++ K  L +D+R  I   LGFF++++
Sbjct: 8   LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +   + N + 
Sbjct: 66  SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  K +WAL++T+               +  L +  V + + EG++F   FA I  
Sbjct: 126 NIPCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           +     M G+    + I RDE +H +F           N  +  K   +    M  EA  
Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVNEKLSYETILDMFKEAVD 226

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    +Y++F+A+R   Q+G +P +    NPFP+M+  I L+
Sbjct: 227 IEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLG-QPKYYNARNPFPFMNN-ISLE 284

Query: 331 KEKNFFETRVTEYQ 344
            + NFFE RV EY+
Sbjct: 285 GKTNFFERRVGEYK 298


>gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium
           japonicum USDA 110]
 gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 360

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 58/364 (15%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G+ RV + D        DV+     +Y WA+E +      HWM  EVP+  DL  W S  
Sbjct: 19  GKGRVGLLDS---TGSYDVD-----RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWASGR 70

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHT 130
            +TD ER ++ +   FF  S+  V +N     Y  +  P   Q ++  AF   E VH   
Sbjct: 71  -VTDSERALLTQIFRFFTQSDIEVGDN-YFKRYIPIFQPLTVQMMM-AAFTNMETVHIDA 127

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +  ++ +LG+ + E F  +R    + AKA++  ++              D+  +  + L 
Sbjct: 128 YALLLKTLGMPKTE-FEAFRGYAQMRAKADYMHEFG------------VDSVADVARTLA 174

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +F    EGM  +  FA +L+  R NKM G+ +   + +RDESLH   GI       I+  
Sbjct: 175 MFGAFTEGMALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCE-GI-------IKLF 226

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV----------GLNAPSCEQYMQFIA 300
           H W +E    +R +  +  ++++A     + + FV          G+       Y++++A
Sbjct: 227 HEWHRETGAVTRPVRDD--IVDVAKTMVKLEENFVELAFGLGKIEGMLPEHIHAYVRYVA 284

Query: 301 NRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           + R  Q+ + P+F + E           +P PW+ E+++  +  NFFE R TEY + A  
Sbjct: 285 DWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVEILNGVEHANFFEQRATEYSKAASR 344

Query: 350 -KWD 352
             WD
Sbjct: 345 GSWD 348


>gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 290

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 31/296 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   EV M  D   + +   LT +E+  IK  L FFA+S+ +V  N+V      +   E 
Sbjct: 7   WTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEA 63

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
           + +   Q   E +HS  +  +I +L  D+ E   LFN    +PSI  KA WA ++    S
Sbjct: 64  KMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--S 121

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
             SF T              V +   EG++F   FA I  L +   M G+    + I RD
Sbjct: 122 DTSFDTRC------------VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 169

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH +F   +         H +          ++ EA  +E  +  E++P   +G+N  
Sbjct: 170 EGLHTDFACLL---------HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCK 220

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              QY++F+A+R    +G + ++  + NPF +M E I L+ + NFFE R T YQ+G
Sbjct: 221 LMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQKG 274


>gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
          Length = 346

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 19/328 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +LN +S +V     +++ WA+  Y +   N W P E+    D   + +   LT+ E+   
Sbjct: 22  ILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
           K+ +G  A  +S+  +    A   +L++          +F+E VH+ ++ Y+++SL    
Sbjct: 79  KKIIGLLAFLDSVQTDYSXRAA-EYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKA 137

Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            + E+F  ++    +  +  + +  Y + + +P+  T        FL+ + V+ V+ EG+
Sbjct: 138 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKT--------FLESI-VYDVILEGL 188

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GFA   +L R  K V  +    YI RDE LH+    ++  ++ +E P L T+E + 
Sbjct: 189 NFYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKT 248

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318
             +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G E P  +   N
Sbjct: 249 FVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHN 308

Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           P  W+    D+   K +FFE +  +Y +
Sbjct: 309 PXKWIRAYEDVNSGKSDFFEQKSRQYAK 336


>gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 346

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 19/343 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  +R++N  + ++N    +KY W    Y +A NN W+P E+ +  D+   K    L+
Sbjct: 15  IELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDV---KDYRILS 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    + L F    +S+   N+   +  +++  E    L  QAF+EAVHS ++ Y++
Sbjct: 72  KAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYML 130

Query: 136 TSLGLDEGELFNMY--REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++   E     +Y  R+   +  +  +                 K  DQ  L    V  
Sbjct: 131 DTICSPEERTSILYQWRDDEHLLRRNKFIGDIYNDFQL------HKTPDQ--LARTMVAN 182

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++ E P L+
Sbjct: 183 YILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELRREQPELF 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E + +   M+ E  L EIA+    +     GL +     Y+ ++AN R   +GL  +F
Sbjct: 243 TPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSANLGLGVIF 302

Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             + E P    W+S+  +    K +FFE + + Y + A ++ D
Sbjct: 303 PGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345


>gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 225

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 11/225 (4%)

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +H   + Y++ ++G+ E E +  + +  ++  K  + L++ ++          K   +
Sbjct: 10  ETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLEFEES---------KKHDKK 59

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
              + L VF    EG+  +  FA +L+  R  KM G+ +   +  RDE+LH N  I + N
Sbjct: 60  HVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLHTNSIIMLFN 119

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANR 302
               EN  +W  EF+++  +       LE  +       G V GL+A     Y++++ANR
Sbjct: 120 TFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVRNYIRYVANR 179

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           R  Q+GLE ++   +NP PW+ E+++  +  NFFE RVTEY + A
Sbjct: 180 RLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224


>gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 358

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 163/339 (48%), Gaps = 50/339 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+ +DL  W S   ++D ER ++ +   FF  S+  V+
Sbjct: 30  RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWASDR-VSDQERNLLTQIFRFFTQSDVEVS 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           +N  L  Y  +  P   Q ++  AF   E +H   +  ++T+LG+   E F+ +R+  ++
Sbjct: 89  DN-YLKRYMPIFQPLEIQMMM-AAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAM 145

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             KA+    Y  T     F  GT     +  + L +F    EGM  +  FA +L+  R N
Sbjct: 146 RDKAD----YMHT-----FGVGTM---ADVSRTLAMFGAFTEGMALFASFAMLLNFPRHN 193

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           KM G+ +   + +RDESLH   GI       I   H W +E    ++ +  +  +L++A 
Sbjct: 194 KMKGMGQIVTWSVRDESLHCQ-GI-------IRLFHEWNRETGALTKPVRDD--ILDVAT 243

Query: 276 AHETMPKGFV----------GLNAPSCEQYMQFIANRRCHQIGLEPL---FKYTE----- 317
               + + FV          G+ A   + Y++++A+ R  Q+ L  L   F+ TE     
Sbjct: 244 TMVGLEEKFVDLAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQ 303

Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
              +P PW+ E+++  +  NFFE R TEY + A +  WD
Sbjct: 304 LRPHPLPWLVEILNGVEHANFFEQRSTEYSKAATQGAWD 342


>gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 313

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 26/314 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   +E Y  A    W   EV +  D   ++ K  L +D+R  I   LGFF++++
Sbjct: 8   LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  + + +   E   +   QA  E VH+  +  +I  L  D+     + N + 
Sbjct: 66  SIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILNAFD 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP +  K +WAL++ +              D+    +  V + + EG++F   FA I  
Sbjct: 126 NVPCVRKKDDWALKWIEN-------------DKATFAERLVAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           +     M G+    + I RDE +H +F           N  +  K   +K   M  EA  
Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVKEKLSYEKILDMFKEAVD 226

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    +Y++F+A+R   Q+G +P +    NPF +M+  I L+
Sbjct: 227 IEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLG-QPKYYNARNPFSFMNN-ISLE 284

Query: 331 KEKNFFETRVTEYQ 344
            + NFFE RV EY+
Sbjct: 285 GKTNFFERRVGEYK 298


>gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 348

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 15/336 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    ++Y WA + Y  A NN W+P E+ +  D    K    L   ER 
Sbjct: 22  RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL + N+  ++   ++  E    L  QAF+E VHS ++ Y++ ++  
Sbjct: 79  AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +     + D+  L    +   + EG++
Sbjct: 138 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFYANNDKASLMKTLMANYILEGIY 191

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I+++K E P  +T E  + 
Sbjct: 192 FYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFRNIIHEMKKEEPEYFTPEKVKV 251

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ E    EIA+    +     GLNA     Y++++ N R   +G   L +   E P
Sbjct: 252 YEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYLGNMRWRSLGFGNLLEDNIEEP 311

Query: 320 --FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
               W+++  +    K +FFE + T Y +   ++ D
Sbjct: 312 ENMRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 348

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  NT  +P    + R+    KRM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 5   LKRNTLFNPSGDTDLRL----KRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E     +Y+       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            N R   +G   L+    K  EN   W+ +  +    K +FFE + T Y +   L
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344


>gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus]
          Length = 419

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 28/299 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+ M  D   W   +  + DE+  +K  L FFAS + +V  NI L     +  P+ 
Sbjct: 132 WVVEEIDMSGDSKDW---DDASSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLS 170
           RQ+   Q   EAVH  ++  +I +   D  E  ++ R +   P I  KA WA ++    +
Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET 248

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           +              L +  V +   EG+ F   F  I  L +  K  G++     I RD
Sbjct: 249 AS-------------LAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH    + +         HL  K  Q++   +   A  +E  +    +P   +G++  
Sbjct: 296 EGLHATASVLIYK-------HLRNKLPQERVHEIFEHAVSVECEFISSALPVALIGISEK 348

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           S  +Y++F+A+   +Q+G + ++    NPF WM ++I L+ + NFFE RV EY +   L
Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYN-CANPFEWM-DMISLQGKTNFFENRVAEYSKPGVL 405


>gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
          Length = 347

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 15/333 (4%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D+   K    L   ER 
Sbjct: 21  RRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPPAERK 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + L F    +SL +NN+   I  +++  E    L  Q F+E VHS ++ Y++ S+  
Sbjct: 78  AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDSICS 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E     +Y+       K +  L    T     +       ++  L    +   + EG++
Sbjct: 137 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFQAHRNKFCLMKACIANFILEGIY 190

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P L+T E    
Sbjct: 191 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNMIIELKQEEPELFTPEKVAI 250

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317
              M+ E    EIA+    +     GL       Y++++ N R   +G + LF+  +   
Sbjct: 251 YEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGNLRWKSLGFDYLFEDNQTEP 310

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
               W+++  +    K +FFE + T Y +   L
Sbjct: 311 TDMEWVAQYSNANMVKTDFFEAKSTAYAKSTAL 343


>gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511]
 gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100]
 gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511]
          Length = 343

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y   +  Y     N+W+P EV M+ D    K  N L+++E+      +G  A+ +S  
Sbjct: 33  IRYPSFYRAYKELTTNYWLPDEVDMKSDA---KQYNHLSEEEKYAFDSIIGLLATLDS-P 88

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++S+          A +EA+H+ ++ Y++ S+    ++  +F   R  P+
Sbjct: 89  QTRFIYNIAEYVSDASVHAITAIIAQQEAIHNESYSYVLASITNLQEQNRVFEEARTHPT 148

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    ++        S+     +   E +    V   + EG+ FY+GFA   +L R 
Sbjct: 149 IIKRNAPIMK--------SYDDFMNNKTPENMVKALVQSSILEGINFYSGFAYFYNLVRQ 200

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  ++I  I  ENP L T E           A  LE A
Sbjct: 201 NKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQTDELNDYVYASFRHAVELEQA 260

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +GL+P+++ +TEN   W+    D   + 
Sbjct: 261 WSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMYQGHTENSMTWIKAYADNFTET 319

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 320 KTDFFEMRNSSYKK 333


>gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella
           denticola F0289]
 gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola F0289]
          Length = 348

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 21/355 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  NT  +P    + R+    +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 5   LKRNTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E     +Y+       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
            N R   +G   L+    K  EN   W+ +  +    K +FFE + T Y +   L
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344


>gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
 gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
          Length = 348

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 160/358 (44%), Gaps = 21/358 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +  NT  +P    + R+    +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 5   LKRNTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D    K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E     +Y+       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
            N R   +G   L+    K  EN   W+ +  +    K +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347


>gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 352

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 23/332 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++  L  +KY WA + Y     N W+P  V +  D+  +K    LT+DER      L F
Sbjct: 34  TNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLDYKE---LTEDERQAYDEILSF 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
               +S+   NI   I  ++  PE    L   A++EA+HS ++ Y I S+   +    ++
Sbjct: 91  LVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVIPPQHRETVY 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
             +++ P +  +  + A  Y + L  P+          E   ++ V   + EG++FY GF
Sbjct: 150 YWWKKDPILFERNKYIADIYQKFLEEPTM---------ENYGEVLVGNYLLEGLYFYNGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L   N M G A+  +YI RDE  H+      +  +  E    +    + K   M 
Sbjct: 201 MFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTDEEFKKYLP--KDKIYEMF 258

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             A   E  ++ + +    +G+N  S E+Y  ++AN+R   +GL+P+F  T NP+  +  
Sbjct: 259 KVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLKALGLDPIFPDTPNPYEHLER 318

Query: 326 VIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           + D   E     NFFE  VT Y Q + ++ WD
Sbjct: 319 IADTGGEGNVKANFFEATVTSYNQASAVEGWD 350


>gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
 gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
          Length = 355

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 19/340 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+   K    L 
Sbjct: 24  TDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDI---KDYPRLP 80

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER    + L F    +S+   N+   I  +++  E    L  Q F+EAVHS ++ Y++
Sbjct: 81  AEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHSQSYSYML 139

Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            ++   +   E+   ++E   +  +  +                TK A +  ++ L   Y
Sbjct: 140 DTICEPQKREEILYQWKEDEHLLLRNEFIGSLYNEFQE------TKSA-RSLVRTLIANY 192

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ ++K E P L+
Sbjct: 193 IL-EGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKEEPQLF 251

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             E  +  R M+ E    EI + H  +     GL       Y++++ N RC  +G E ++
Sbjct: 252 AAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLGFERIY 311

Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           + Y   P    W+ +  +    K +FFE + T Y + + L
Sbjct: 312 EGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSAL 351


>gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 305

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 10/276 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY WA + +     N W P EV    D   ++    LT  E+ M         S +S   
Sbjct: 35  KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +   ++  
Sbjct: 93  NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K ++     + L+         D D   L    V   + EG++FY+GF  I +L RA KM
Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           +G A+  ++I RDE  HL    ++IN ++ E P L+  E   K   M  +A  LEI +  
Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  +G      E+Y+ ++ ++R   I L+ L+
Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLY 300


>gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
 gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
          Length = 349

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 19/343 (5%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +  ++M+N  + ++N    +KY W  E Y +A NN W+P E+ +  DL  +K    L 
Sbjct: 15  IELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLKDYKI---LD 71

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + E+    + L F    +S+   N+   I  +++  E    L  QA++EA+HS ++ Y++
Sbjct: 72  EYEKTAFDKVLSFLIFLDSIQTANLPY-IGEYITANEINLCLTIQAYQEAIHSQSYGYML 130

Query: 136 TSLGLDEGELFNMY--REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            S+   E     +Y  R+   + A+  +            +     + D   L    V  
Sbjct: 131 DSICSPEERTNILYQWRDDEHLLARNKFI--------GDLYNEFQVNKDPYSLVKTMVAN 182

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ +++ E P L+
Sbjct: 183 YILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQNEEPELF 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+E     + M+      EIA+    + +   GL     E Y++++ N R   +    L+
Sbjct: 243 TEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTALNFGKLY 302

Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
             Y E P    W+SE  D    K +FFE + + Y + + +  D
Sbjct: 303 DGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345


>gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 313

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 26/314 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ +   +E Y  A    W   EV +  D   ++ K  L +D+R  I   LGFF++++
Sbjct: 8   LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
           S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +   + N + 
Sbjct: 66  SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  K +WAL++T+                  L +  V + + EG++F   FA I  
Sbjct: 126 NISCVRKKDDWALKWTKNKKLT-------------LAERLVAFAIVEGVFFSGSFAAIFY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           +     M G+    + I RDE +H +F           N  +  K   +    M  EA  
Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVNEKLSYETILDMFKEAVD 226

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  + +P   +G+NA    +Y++F+A+R   Q+G +P +    NPFP+M+  I L+
Sbjct: 227 IEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLG-QPKYYNARNPFPFMNN-ISLE 284

Query: 331 KEKNFFETRVTEYQ 344
            + NFFE RV EY+
Sbjct: 285 GKTNFFERRVGEYK 298


>gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 407

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 41/296 (13%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           H +  +V +  DL  W+S   L DDER  I   L FFA+S+ +V  N+V    + +   E
Sbjct: 132 HLLWLQVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTE 188

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS  +  +I +   +  E   LFN    +P +  KA+WAL +    
Sbjct: 189 ARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNW---- 244

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                  G + A      +  V +   EG++F   FA I  L +   M G+    + I R
Sbjct: 245 ------IGNQKAS---YGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 295

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   +         HL  K   Q    ++  A  +E  +  E +P   +G+N 
Sbjct: 296 DEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNC 348

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              ++Y++FI                 ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 349 QLMKRYIEFIYR--------------AENPFDFM-ENISLEGKTNFFEKRVGEYQR 389


>gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
 gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
          Length = 348

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 148/325 (45%), Gaps = 34/325 (10%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   ++ Y +   N W   E+ MQDD+  W S + +  D  L I   L   AS +SL 
Sbjct: 38  IAYPQMYDLYQALLANFWKAQEINMQDDIKQWDSLSSVEKDVFLRINTQL---ASLDSLQ 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154
              +  A+  ++++   +      + +EAVH+ ++ YI++SL    ++ E FN  +  P 
Sbjct: 95  TPTMSQAM-DYVTDSSFKAIFAVISQQEAVHTESYSYILSSLVSVSEQNERFNQAKSDPV 153

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD--------LFVFYVVFEGMWFYTGFA 206
           +  +    L                DA +EF Q+        L V  +  EG++FY GFA
Sbjct: 154 VQKRNELIL----------------DAYEEFRQNPTPQNLFKLSVNSINLEGIYFYAGFA 197

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               L R  KM+  +    YI RDE  H  F    I  +  ENP L T E  Q   T + 
Sbjct: 198 FFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPELHTDENIQYIYTTID 257

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  LE  +A   +     GL+     +Y++++AN+R  Q+GL+ L++   NP PW+   
Sbjct: 258 KAVQLEKEWAQYILA-DIEGLDLVEFGEYVEYLANKRLRQLGLDNLYEERSNPMPWIQVF 316

Query: 327 IDL---KKEKNFFETRVTEYQQGAE 348
            D      + +FFE +   Y + ++
Sbjct: 317 GDDMMNDTKSDFFEQKSRTYTKVSQ 341


>gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 26/228 (11%)

Query: 127 HSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H   + +++ ++G+ E E   F  Y+E+            Y Q      F   +K   ++
Sbjct: 1   HVAAYSHLLDTIGMPESEYSAFMKYKEMKD-------KYDYMQ-----GFNVNSK---ED 45

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             + + VF    EG+  +  FA +L+  R NKM G+ +   + +RDE+LH N  I +  +
Sbjct: 46  IAKTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKE 105

Query: 245 IKIENPHLWT----KEFQQKSRTML-HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
              ENP +WT    KE  +  R ++ HE   +++A+    M     GL A   + Y++FI
Sbjct: 106 FIKENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPME----GLTAQEVKDYIRFI 161

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           ANRR  Q+GLEP++   +NP  W+  +++  +  NFFE R TEY + +
Sbjct: 162 ANRRLIQLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKAS 209


>gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1]
 gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1]
          Length = 419

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 28/299 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+ +  D   W+  +    DE+  +K  L FFAS + +V  NI L     +  P+ 
Sbjct: 132 WVVEEIDLSGDSKDWEDASS---DEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLS 170
           RQ+   Q   EAVH  ++  +I +   D  E  ++ R +   P I  KA WA ++    +
Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET 248

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           +              L +  V +   EG+ F   F  I  L +  K  G++     I RD
Sbjct: 249 AS-------------LAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH    + +   +K   P       +++   +   A  +E  +    +P   +G++  
Sbjct: 296 EGLHATASVLIYKHLKNRLP-------RERVHEIFKHAVSVECEFISSALPVALIGISEK 348

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           S  +Y++F+A+   +Q+G + ++    NPF WM ++I L+ + NFFE RV EY +   L
Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYN-CANPFEWM-DMISLQGKTNFFENRVAEYSKPGVL 405


>gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 277

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 28/276 (10%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT +E+  IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  
Sbjct: 11  LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSK 70

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +L  D+ E   LFN    +PSI  KA WA ++    S  SF T              
Sbjct: 71  LIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------ 116

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 117 VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--------- 167

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H +          ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G +
Sbjct: 168 HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEK 227

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 228 KIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261


>gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
 gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
          Length = 342

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 137/321 (42%), Gaps = 28/321 (8%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           NQ    +Y   +  Y       W   E+ + +D+  W      + DE+  I   L FFAS
Sbjct: 33  NQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECWDKS---SSDEQHFIIHILAFFAS 89

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNM 148
            + +V  N+ +     +  P+ R +   Q   E++H   +  +I +       + ++   
Sbjct: 90  LDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTYVKNSQQQSKILRS 149

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
            +E+P I  KA W              T   D +   L +  V +   EG+ F   F  I
Sbjct: 150 VQEMPIIRKKAQW-------------VTSWMDPETCSLAERLVAFTCVEGVQFSGAFCAI 196

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L +  +  G+      I RDE LH    + + N +K   P     +       +  +A
Sbjct: 197 YWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPVAVVHD-------IFGQA 249

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           T +E  +  E +P   +G+NA +   Y+++I++    ++G   LF  ++NPF WM+ +I 
Sbjct: 250 TTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKLFN-SKNPFEWMT-MIG 307

Query: 329 LKKEKNFFETRVTEYQQGAEL 349
           ++ + NFFE RV EY +   +
Sbjct: 308 MEGKSNFFEGRVAEYSKAGSM 328


>gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
 gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
          Length = 341

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 149/328 (45%), Gaps = 27/328 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           +LP++    W    +A +  W   E  +  D   W+ K  L   ER  +K  L FFAS++
Sbjct: 11  ILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRHK--LCVQERFFLKHILAFFASAD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH-----TFQYIITSLGLDEGELFNM 148
           ++V  N++  +   +   E R +  +Q   E VHS       F+YI  S   +  +L N 
Sbjct: 69  TIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNS--EERNKLLNA 126

Query: 149 YREVPSITAKANWALQYTQT-----------LSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +  I  KA WAL++T++           L         K    +  + +  F +V E
Sbjct: 127 FDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIV-E 185

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  +     M G+    + I RDE LH +F     N     N  L     
Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIPINEKLSP--- 242

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q+  +M  EA  +E  +    +P   +G+NA    +Y++F+A+R   ++  +P    T 
Sbjct: 243 -QQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELR-QPKHFNTP 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           NPF +M+  I L+ + NFFE RV EY++
Sbjct: 301 NPFNFMTN-ISLEGKTNFFERRVGEYKR 327


>gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796]
          Length = 306

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           F   FA I  L +   M G+    + I RDE LH +F   +   +K
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLK 288


>gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3]
          Length = 306

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           F   FA I  L +   M G+    + I RDE LH +F   +   +K
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLK 288


>gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13]
          Length = 296

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 18/218 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LFN    +P I  KA WAL++ Q            DAD  F + L  F  + EG++
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFA 280


>gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
 gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
          Length = 346

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 26/331 (7%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++N    +KY W  + Y  A NN W+P E+ +  D    K    L + ER    + L F
Sbjct: 28  TNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDT---KDYPHLDEAERTAYDKILSF 84

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
               +S+   N+   +  +++  E    L  Q F+E VHS ++ Y++ ++   E     +
Sbjct: 85  LIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVHSQSYSYMLDTICSPEQRNEIL 143

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE------FLQDLFVFYVVFEGMWFY 202
           Y+          W     + L   +F  G  +  QE      F++ L   Y++ EG++FY
Sbjct: 144 YQ----------WKTD-ERLLKRNTFIGGCYNDFQEHKDFFRFMKVLIANYIL-EGIYFY 191

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E P ++T+E      
Sbjct: 192 SGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKKERPDMFTEEKVASYA 251

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL---FKYTENP 319
            ML E    EI +    +     GL       Y+ ++ N R   +   PL   F      
Sbjct: 252 EMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNLDFPPLYPGFDTEPED 311

Query: 320 FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
             W+S   +    K +FFE R T Y +   L
Sbjct: 312 MAWVSAYSNANMVKTDFFEARSTAYAKSTAL 342


>gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1]
 gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1]
          Length = 346

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 21/319 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y   +  Y    +N W+P  + + +D+  + +    T +  L +   +G  ++ +S +
Sbjct: 35  IRYPQMYTIYKQIRSNFWIPQRISLVEDVRQFPNLPKRTQEAYLDV---IGQLSTLDS-I 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153
              +VL   R LS P  +      A +EA H  ++ Y+++S+  D   + E+F+  +   
Sbjct: 91  QTRLVLEFGRFLSEPTYQPIAANIAQQEATHEESYSYVLSSVVPDTNKQNEVFDKAKTNE 150

Query: 154 SITAKANWALQYTQT-LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            +  + +   +Y Q  + +P+         Q F + L V  VV EG++FY+ F    +L 
Sbjct: 151 DVLKRNDRVYKYYQEFVDNPT--------PQTFFRAL-VACVVLEGIYFYSAFTFFYNLA 201

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R + MVG +    YI RDE  H  F   V+  +  E P L T+E       M+ EA  LE
Sbjct: 202 RNHLMVGTSTMINYIQRDEVAHAYFFSQVLRYLMAERPELHTEENVNFIYDMMQEAADLE 261

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL--- 329
           I Y+ + +     GL+    E Y++ + NRR   +GL+ ++   EN  PWM    D    
Sbjct: 262 IEYSQKIL-HDIPGLDLEELEGYIKSLCNRRLRGVGLDDIYAGVENSMPWMIAFDDGSNN 320

Query: 330 KKEKNFFETRVTEYQQGAE 348
           + + + FE +   Y++  E
Sbjct: 321 QTKSDMFEQKSRNYKKVDE 339


>gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 347

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 156/346 (45%), Gaps = 15/346 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+       +V ++RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV-- 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
            K    L+  E+    + L F    +S+   N+   +  +++  E    L  QAF+EA+H
Sbjct: 66  -KDYRRLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEALH 123

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   +     +Y+       K +  L          +       D   L 
Sbjct: 124 SQSYSYMLDSICSSQERNDILYQ------WKNDARLLERNKFIGDLYNDFITHHDGIHLM 177

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++ 
Sbjct: 178 KTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQK 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T    ++ + ML      EI +    +     GL      +Y+ ++ N R   +
Sbjct: 238 EEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRSTSL 297

Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349
           G   L++ Y + P    W+S   +    K +FFE R + Y + + L
Sbjct: 298 GFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343


>gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
          Length = 349

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    ++        ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIME--------AYDEFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHEAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E M +G  G++      Y+++ AN+    +G+  L+  ++EN   W+    D   + 
Sbjct: 267 WSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A]
 gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A]
          Length = 354

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 37/339 (10%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P ++ +  D+  +   + LT+DER      L +
Sbjct: 36  TNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQDVTDY---SNLTEDERYAYDGILSY 92

Query: 89  FASSESLVANNIVLAIYRHLSN----PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
               +S+   NI      HL N    PE    +  Q  +E +H+ ++QYII ++   +  
Sbjct: 93  LTFLDSIQTCNI-----PHLKNSITAPEVSLCMAEQISQEGMHNQSYQYIIETIVPPDRR 147

Query: 143 GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +++  +RE   + ++  + A  Y + +  P+       A+  F   +  F  + EG++F
Sbjct: 148 NQVYEFWREDKVLRSRCEFIAKIYQKYIDDPT-------AENYFTALMADF--LLEGLYF 198

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GF    +L     M G A+ ++ I RDE  H+     +I + +   PH   + ++   
Sbjct: 199 YNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSTEQIYE--- 255

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTEN 318
             M   A   E  + +  +    +G+   S EQY +++AN R   IGLEPL+   ++T++
Sbjct: 256 --MFDTAVNHECRWTNHIVGSNILGITESSTEQYTKYLANIRLRSIGLEPLYTGEEFTKS 313

Query: 319 PFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           P+  +    D KK+     NFFE+ VT Y   + +  WD
Sbjct: 314 PYSHLERFSDTKKDGHTKANFFESTVTSYVMSSGVSGWD 352


>gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c]
 gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 269

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y  A  + W   EV +  DL+ W   + L DDE+  IK  L FFA+S+ +V  N+V    
Sbjct: 2   YKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERFS 58

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E VHS  +  +I +   D  E   LFN    +P I  KA+WA
Sbjct: 59  QEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADWA 118

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++  + S+             F + +  F  V EG++F   FA I  L +   + G+  
Sbjct: 119 LKWISSNSA------------NFAERIVAFAAV-EGIFFSGSFASIFWLKKRGLLPGLTF 165

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + N +  + P+        +   +L EA ++E  +  + +P 
Sbjct: 166 SNELISRDEGLHTDFACLMYNYVVQKPPN-------SRVIEILKEAVVIEKDFLTDALPV 218

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             +G+N     QY++F+A+R  +++  E  +   +NP
Sbjct: 219 RLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNP 254


>gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
 gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
          Length = 355

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P  + +  D+  + +   LTDDER      L +
Sbjct: 37  TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 93

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   +   ++ PE    +  Q  +E +H+ ++QYII ++   E   +++
Sbjct: 94  LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETIIPPERRTQVY 152

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + +R    +  +  + A  Y + +  P+         + +   L   Y++ EG++FY GF
Sbjct: 153 DFWRTDKVLKERCEFIASLYQKYIDHPT--------SENYFVALMADYLL-EGLYFYNGF 203

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L     M G A+ ++ I RDE  H+     +I + +   PH   + +      M 
Sbjct: 204 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVDQIYD-----MF 258

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322
             A   E  + +  +    +G+   S EQY +++AN R   IGL+PL+   KY ++P+  
Sbjct: 259 DRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIRLRSIGLDPLYPDIKYNKSPYTH 318

Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 319 LERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353


>gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 336

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 29/301 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA WA ++    S  SF T              V +   EG++F   FA I  
Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         H +          ++ EA  
Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +  E++P   +G+N     QY++F+A+R    +G   ++ +  +   W + V   K
Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTHSISWKTSVCKAK 311

Query: 331 K 331
           +
Sbjct: 312 Q 312


>gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
 gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
          Length = 344

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P  + +  D+  + +   LTDDER      L +
Sbjct: 26  TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 82

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   +   ++ PE    +  Q  +E +H+ ++QYII ++   E   +++
Sbjct: 83  LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETIIPPERRTQVY 141

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + +R    +  +  + A  Y + +  P+         + +   L   Y++ EG++FY GF
Sbjct: 142 DFWRTDKVLKERCEFIASLYQKYIDIPT--------SENYFVALMADYLL-EGLYFYNGF 192

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L     M G A+ ++ I RDE  H+     +I + +   PH   + +      M 
Sbjct: 193 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVDQIYD-----MF 247

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322
             A   E  + +  +    +G+   S EQY +++AN R   IGL+PL+   KY ++P+  
Sbjct: 248 DRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIRLRSIGLDPLYPDIKYNKSPYTH 307

Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 308 LERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342


>gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca
           mulatta]
          Length = 704

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 142/331 (42%), Gaps = 58/331 (17%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 411 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 467

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 468 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 527

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WAL++           G K+A      +  V + 
Sbjct: 528 YIKDPKEREFLFNAIETMPCVKKKADWALRW----------IGDKEAT---YGERVVAFA 574

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE          +NQI         
Sbjct: 575 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEV--------SLNQI--------- 617

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
                                         +G+N    +QY++F+A+R   ++G   +F+
Sbjct: 618 --------------------IGXXXXXXXXIGMNCTLMKQYIEFVADRLMLELGFSKVFR 657

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 658 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 686


>gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
 gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
          Length = 417

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 34/330 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+ +S+   + P+KY   W+ Y     N+W   EV +  D+  W   N L+DD+R  I 
Sbjct: 101 ILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDW--NNHLSDDDRNFIM 158

Query: 84  RNLGFFASSESLVANNIV--LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             L FFA+++ +V  NI   L     +   EC  Y  + A E A H   +  ++T+   D
Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAEC-AYGFQYAMENA-HGEMYSLMLTTFVKD 216

Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           +    +L N  + +PSI  KA+W  ++ ++             D+ +   L  F +V EG
Sbjct: 217 DALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-EG 262

Query: 199 MWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           ++F   FA I  L     + M G+    Q+I RDE+ H+     + + +   N  L    
Sbjct: 263 VFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSLL---NNRLKESV 319

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             Q     +         + ++++P   +G+N+    QY++++A+R    +G    F   
Sbjct: 320 VYQIIDEAIEIEE----EFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFN-V 374

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +NPF +M + ID+  + NFFE R   Y   
Sbjct: 375 DNPFEYMKK-IDVFVKANFFEKRNDAYSNA 403


>gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus
           iheyensis HTE831]
 gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 347

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 22/314 (7%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           ++ Y     N+W   EV M  D+  + + +    D  L I   L    + ++  A    L
Sbjct: 43  YKMYKRLVGNYWQADEVNMSSDVKQFSTLSKEEQDAYLKIIGLLSTLDAPQTRTA----L 98

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKAN 160
            I  + ++P  +  +   A +EAVH+ ++ Y+++S+    ++ E F + R    +  K N
Sbjct: 99  LISLYATDPSVQSIMAVIAQQEAVHNESYSYVLSSVVSWNEQNEAFQLGR-TDELLLKRN 157

Query: 161 WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
             L  QY   + +PS          E +    V+  + EGM+FY+GFA    L R NKMV
Sbjct: 158 EQLTEQYNAFVDNPSM---------ENMLKTLVYTSLLEGMFFYSGFAFFYHLARQNKMV 208

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G +    YI RDE  H  F  ++      ENP     EF         ++  LEI ++H 
Sbjct: 209 GTSTMISYINRDELEHGRFITELFRATLEENPSHNNAEFIDWIYDRFQQSVELEIEWSHY 268

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNF 335
            + K   G++    + Y+++ AN+    +GLE L+ ++ ENP  W+   +D     + +F
Sbjct: 269 VLNK-LEGIDMDDMDGYIKYRANKMLRMMGLEELYPQHVENPMKWVRAYVDNFDGTKTDF 327

Query: 336 FETRVTEYQQGAEL 349
           FE +  +Y + ++L
Sbjct: 328 FEQKSRQYTKTSDL 341


>gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sp. AT1b]
 gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b]
          Length = 346

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 22/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y    +N W+P E+ M  D+  W     LT+ E+   KR +G  +  +S V
Sbjct: 34  IAYPQFYTIYKQLLSNFWIPDEISMSKDMQQWPQ---LTEREQDAFKRIIGLLSILDS-V 89

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +L      S+      L   A +E VH+ ++ Y+++SL    ++  +FN+ ++   
Sbjct: 90  QTRYILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLAEQNRIFNIAKDDEM 149

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +  +  + L  Y     +P+     K           V  V+ EG+ FY+GFA   +L R
Sbjct: 150 VMKRNQFILDLYEAFRETPNAENFAKS---------LVASVILEGINFYSGFAYFYNLAR 200

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSRTMLHEATLLE 272
             KMVG +    YI RDE  H  F   ++  +  ENP +    +F Q     + EA  LE
Sbjct: 201 HQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQFVYDTMAEAVDLE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK- 330
           I +  E + +   GL+      Y++++AN+R   IGL  L++ + E+  PW+    D   
Sbjct: 261 IEWC-EYVLRDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDEDVMPWIRAYSDDSL 319

Query: 331 --KEKNFFETRVTEY 343
              + +FFE +   Y
Sbjct: 320 NATKSDFFEQKSRSY 334


>gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
 gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
          Length = 349

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 20/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D   +     L+++ER      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKGDAKQYPE---LSEEERYAYDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  +  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIFELARTHPT 154

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           I  +    +  Y   L   +  T  K   Q           + EG+ FY+GFA   +L R
Sbjct: 155 IIKRNQPIMDAYDDFLEHKTGETLVKSLIQS---------SILEGINFYSGFAYFYNLVR 205

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G  +   +I RDE  H  F  +VI  I  ENP L T E    +      A  LE 
Sbjct: 206 QNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAYTHDAFRHAVELET 265

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LK 330
            ++ E M +G  G++      Y+++ AN+    +G+  L+  ++EN   W+    D   +
Sbjct: 266 IWSEEVM-EGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKAYADNFTE 324

Query: 331 KEKNFFETRVTEYQQ 345
            + +FFE R + Y++
Sbjct: 325 TKTDFFEMRNSSYKK 339


>gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
 gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
          Length = 347

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 22/320 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           L Y   ++ Y     N+W   EV M  D+   K    L++ E+    + +   A+ +S  
Sbjct: 37  LAYPHWYKTYKRLLGNYWQSDEVNMSTDV---KQFPLLSEKEQETFLKIISLLATLDSSQ 93

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLD-EGELFNMYREVPS 154
              I+LA   + ++P  +  L   A +EAVH+ ++ YI++S+  LD + E F + R+ P 
Sbjct: 94  TRTILLASL-YATDPSIQSILAVIAQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDP- 151

Query: 155 ITAKANWAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           +  K N  L  QY      P         D E +    V+  + EG++FY+GFA   +L 
Sbjct: 152 VLLKRNKKLMEQYNAFAQQP---------DVEDIVKTLVYSTLLEGLFFYSGFAFFYNLA 202

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKMVG +    YI RDE  H  F  ++I  +  E+P L T  F         E+  LE
Sbjct: 203 RQNKMVGTSTMISYINRDELEHGRFISELIRAVLSEHPELNTPAFSDWVYARFRESVDLE 262

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--L 329
             ++ E + +   G++      ++++ AN+    IGL  L+ ++ ENP  W+    D   
Sbjct: 263 TEWS-EYVLQDVEGIDLEEMAGFIKYRANKMLRMIGLSELYPEHVENPMKWIRAYADNFD 321

Query: 330 KKEKNFFETRVTEYQQGAEL 349
             + +FFE +   Y + ++L
Sbjct: 322 ATKTDFFEQKSRSYTKVSDL 341


>gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus]
          Length = 384

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P KY WA +  +     HW+ TEV ++DD+  WKS   LT  E+  I   L  F   +  
Sbjct: 76  PFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQLDVE 134

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVP 153
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E   F  Y+E+ 
Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEMT 194

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
                    L + +++   +     +   +  L          EG+  +  F  +L+  +
Sbjct: 195 D-------KLDFMKSMDVSTIPNLARSLFKAVLN---------EGVSLFAAFVMLLAFQK 238

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE 
Sbjct: 239 RGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELEF 298

Query: 274 AY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
           A+   A    P    GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 299 AFIDLAFSYCP-ALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 358 GADLTNFFENHVTEYETGG 376


>gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
 gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
          Length = 258

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 50/295 (16%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   EV + +D   WK    L  +E+  +   L FFA+S+ +V  N+V    + +  PE 
Sbjct: 3   WTTEEVDLGED---WKDWQKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIPEA 59

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
           + +   Q   E +HS  +  +I +   D  E   LFN  + +P +  KA+WAL++  +  
Sbjct: 60  KCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS-- 117

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      D+    +  V +   EG++F   FA I    +   + G+    + I RD
Sbjct: 118 -----------DESTFAERLVAFAAVEGIFFSGSFAAIFWFKKRGLLPGLTFSNELISRD 166

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH +F   + + +    P         + + ++ +A  LE  Y  E +P   +G+NA 
Sbjct: 167 EGLHCDFACLLFSHLNHPTP-------VSRIQEIIRDAVRLEEEYLSEALPVALIGMNAR 219

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              QY+QF+A+R   ++                        + NFFE RV EYQ+
Sbjct: 220 LMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQK 250


>gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 343

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+P E+PM  D + +     L  +E+   K N+G  A  +S+     V  + R+ ++ 
Sbjct: 47  NHWIPDEIPMSKDASQFPV---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++SL  D+   E+F  ++  P +  +  +     Q  
Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSDQEQKEIFEYWKNDPVLLERNTFISDIYQEF 162

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    +   Q F Q + V  ++ EG++FY+ FA   +L R  KM+  ++   YI R
Sbjct: 163 RD-------EQNPQTFFQAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+  + P L TKE       M++ A  LE  +AH T+ K   G++ 
Sbjct: 215 DENQHCYFFAEVFKQLLSDFPELNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDL 273

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y++++AN R   +G++  ++  + N  PW+    D  L   K +FFE +   Y
Sbjct: 274 NELSDYIKYMANMRLRLLGMDKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331


>gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans]
          Length = 346

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 141/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    K    L+  E+      +G  A+ +S  
Sbjct: 36  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---KQYGELSAREKNAYDSIIGLLATLDS-P 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 92  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLADQNRVFEIARTHPT 151

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I A+    +Q        ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 152 IVARNQPIMQ--------AYDDFMREKTAETLLRSLIQSSILEGINFYSGFAYFYNLVRQ 203

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L T E           A  LE  
Sbjct: 204 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDYVHQAFEHAIRLETE 263

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E +  G  G++     QY+++ AN+    +G+E L+   ++N  PW+    D   + 
Sbjct: 264 WSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNVMPWIKAYADNFTET 322

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 323 KTDFFEMRNASYKK 336


>gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes EGD-e]
 gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes Finland 1988]
 gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL R2-561]
 gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 10403S]
 gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes LO28]
 gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e]
 gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes L99]
          Length = 349

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria
           monocytogenes Clip81459]
 gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-175]
 gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL S4-378]
 gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 1816]
 gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 220]
 gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 349

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua
           Clip11262]
 gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262]
          Length = 349

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIM--------AAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL J1-023]
          Length = 349

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMT--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes J0161]
 gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
 gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
          Length = 349

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 144/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D   + +   L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3]
 gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 048L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent
           virus]
          Length = 376

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 148/326 (45%), Gaps = 11/326 (3%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D     P +Y   ++K+ +  + HW   E+ MQDD+  W   N L++ E+  + + L F
Sbjct: 48  ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  VA   V  + +    PE R  L      EA+H  ++ ++I++L L +   +  
Sbjct: 106 FTQGDVDVAVGYVQYL-QLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDVT-YQE 163

Query: 149 YREVPSITAKANWAL--QYTQTLSSPSFTT---GTKDADQEFLQDLFVFYVVFEGMWFYT 203
           + +  ++  K  +    ++  T     F     G     +E    + +F    EG+  ++
Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSR 262
            F  +L+  R   M  + +  Q+ + DE+ H N  +++ + + +EN  H+     + + R
Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
               +   LE  +       G    L A   + Y+++I NRR   +G  PL+   ENP P
Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA 347
           W+ ++++     NFFE + TEY + +
Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKAS 369


>gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
 gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
          Length = 304

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 34/307 (11%)

Query: 17  VNVDDKRMLNA------RSDVNQ--LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +NV+D R+ N       + ++ +  + P+++   W  Y  A  + W   EV +  DL  W
Sbjct: 19  INVNDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHW 78

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS
Sbjct: 79  ER---LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHS 135

Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  +I +   +  E   LFN    +P +  KA+WAL++       S  T T      F
Sbjct: 136 EMYSLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI------SHKTAT------F 183

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
            + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 184 AERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYV 242

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
            ++ P       + +   ++ +A  +E  +  E +P   +G+N    ++Y++F+A+R   
Sbjct: 243 -VQKPT------EDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLV 295

Query: 306 QIGLEPL 312
           ++G + +
Sbjct: 296 ELGCKKV 302


>gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL N1-067]
 gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL S4-171]
          Length = 349

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQKRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVDLETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
 gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
          Length = 352

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 29/335 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P  + +  D+  + +   LTDDER      L +
Sbjct: 34  TNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQDVTDYAN---LTDDERYAYDGILSY 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   E   +++
Sbjct: 91  LTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVY 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
             +R    +  +  + A  Y + +  P+       ++  F+  +  F  + EG++FY GF
Sbjct: 150 EFWRTDTVLKDRCEFIAKLYQKYIDDPT-------SENYFIALMADF--LLEGLYFYNGF 200

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L     M G A+ ++ I RDE  H+     +I + +   PH   + ++     M 
Sbjct: 201 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MF 255

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322
             A   E  + +  +    +G+   S E+Y +++AN R   IGLEPL+   KY ++P+  
Sbjct: 256 DMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYNKSPYTH 315

Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 316 LERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
 gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
          Length = 349

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L+++E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPNLSEEEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    ++        ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIME--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHEAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D   + 
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R + Y++
Sbjct: 326 KTDFFEMRNSSYKK 339


>gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
 gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
          Length = 355

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 31/336 (9%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87
           +++ QL  ++Y WA   Y     N W+P  + +  D+   W     LTD+ER      L 
Sbjct: 37  TNLMQLNDVRYNWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTDEERYAFDGILS 92

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDE-GEL 145
           +    +S+   NI   +   ++ PE    +  Q  +E +H+  +QY+I T + L++  ++
Sbjct: 93  YLTFLDSIQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLEKRNQV 151

Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           ++ +R    + A+  + A  Y + + +PS         + +   L   Y++ EG++FY G
Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYIDTPSI--------ENYFVALMADYLL-EGLYFYNG 202

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F    +L     M G A+ ++ I RDE  H+     +I +     PH   + ++     M
Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQRIIVEAMETFPHSVEQIYE-----M 257

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321
              A   E  + +  +    +G+   S EQY +++AN R + IGL+PL+   KY ++P+ 
Sbjct: 258 FDTAVQHECRWTNHIVGDNILGITESSTEQYTKYLANHRLNTIGLKPLYEDEKYKKSPYS 317

Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
            +    D KK+     NFFE  VT Y   + +  WD
Sbjct: 318 HLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353


>gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
 gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
          Length = 359

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 30/358 (8%)

Query: 7   LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   E   +V+++ +     +++ QL  ++Y WA   Y     N W+P ++ +  D+
Sbjct: 18  INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT DER      L +    +S+   NI   +   ++ PE    +  Q  +EA
Sbjct: 78  VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133

Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQT-LSSPSFTTGTKDAD 182
           +H+ ++QY+I ++   +    ++  +R    +  +  +  ++ Q  + +P+       ++
Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYIDNPT-------SE 186

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             F+  L  F  + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I
Sbjct: 187 NYFVALLADF--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +     PH   + ++     M   A   E  + +  + +  +G+   S EQY +++AN 
Sbjct: 245 PEAMQTFPHSVEQIYE-----MFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANA 299

Query: 303 RCHQIGLEPLF---KYTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL-KWD 352
           R   IGL+PL+   +Y+++P+  +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 300 RLRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357


>gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97]
          Length = 317

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 33/275 (12%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A E R+  + +R +        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 73  LEAEEPRLQENPQRFV--------LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D +  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +   
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 286

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               HL  +        ++ EA  +E  +  + +P
Sbjct: 287 ----HLNYRPDPNAVEAIITEAVTIEQEFLTDALP 317


>gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 343

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+P E+PM  D + +     L  +E+   K N+G  A  +S+     V  + R+ ++ 
Sbjct: 47  NHWIPDEIPMSKDASQFPM---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++SL    ++ E+F  ++  P +  +  +     Q  
Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSEQEQKEIFEYWKNDPVLLERNTFISAIYQEF 162

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    +   Q F Q + V  ++ EG++FY+ FA   +L R  KM+  ++   YI R
Sbjct: 163 RD-------EQNPQTFFQAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+  + P L TKE       M++ A  LE  +AH T+ K   G++ 
Sbjct: 215 DENQHCYFFAEVFKQLLADFPELNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDL 273

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y++++AN R   +G++  ++  + N  PW+    D  L   K +FFE +   Y
Sbjct: 274 NELSDYIKYMANMRLRLLGMDKAYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNY 331


>gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
 gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
          Length = 355

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 31/336 (9%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87
           +++ QL  ++Y WA   Y     N W+P  + +  D+   W     LT+DER   +  L 
Sbjct: 37  TNLMQLNDVRYTWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTEDERYAFEGILS 92

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDE-GEL 145
           +    +S+   NI   +   ++ PE    +  Q  +E +H+  +QY+I T + L+   E+
Sbjct: 93  YLTFLDSVQTCNIP-HLKASVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLERRSEV 151

Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           ++ +R    + A+  + A  Y + ++ P+           +   L   Y++ EG++FY G
Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYINQPNI--------DNYFTALMADYLL-EGLYFYNG 202

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F    +L     M G A+ ++ I RDE  H+     +I +     PH   K ++     M
Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKIIAEAMQTFPHSVDKVYE-----M 257

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321
              A   E  + +  +    +G+   S EQY +++AN R   IGL+PL+   KY ++P+ 
Sbjct: 258 FDTAVHHECRWTNHIVGDNILGITESSTEQYTKYLANIRLKAIGLKPLYADEKYQKSPYS 317

Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
            +    D KK+     NFFE  VT Y   + +  WD
Sbjct: 318 HLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353


>gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 30/293 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 66  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 122

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 123 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 182

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA WA ++    S  SF T              V +   EG++F   FA I  
Sbjct: 183 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 228

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         H +          ++ EA  
Sbjct: 229 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 279

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           +E  +  E++P   +G+N     QY++F+A+R    +G + ++  +  PF +M
Sbjct: 280 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-TPFDFM 331


>gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 343

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 152/312 (48%), Gaps = 20/312 (6%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           ++ Y     NHW+P+E+PM  D   ++    LT  E+   K+ +G  A  +S+   N V 
Sbjct: 39  YKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTAQEQETYKKIIGLLAVLDSM-QTNFVT 94

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160
            +  + ++            +E +H+ ++ Y+++S+   E   E+F  +++   +  +  
Sbjct: 95  DVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLSSITNYEVQKEVFEYWKKDEILLERNL 154

Query: 161 WALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  + Y +    P+  T        F + + V  ++ EG++FY+GFA    L R  KM+G
Sbjct: 155 FIAELYQRFRDEPTPAT--------FFEAV-VADMILEGIFFYSGFAFFYHLARQQKMLG 205

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
            ++   YI RDE+ H  F  +V   +  + P L T E  Q     + +A  LE  +AH  
Sbjct: 206 TSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNTSERIQYVYDTIDQAVKLEEKWAHYV 265

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID--LKKEK-NFF 336
           + +   G++     +Y++FIAN+R   +GL+P ++  +N  PW+    D  L + K +FF
Sbjct: 266 LNQ-IDGIDLDDFSRYIRFIANKRLKTMGLQPAYEGVDNCMPWIRPFSDEALNQTKTDFF 324

Query: 337 ETRVTEYQQGAE 348
           E +   Y + ++
Sbjct: 325 EAKSRTYAKVSD 336


>gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
 gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
          Length = 384

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P KY WA +  +     HW+ TEV ++DD+  WKS   L+  E+  I   L  F   +  
Sbjct: 76  PFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQLDVE 134

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVP 153
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E   F  Y+E+ 
Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEMT 194

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
                    L + +++   +     +   +  L          EG+  +  F  +L+  +
Sbjct: 195 D-------KLDFMKSMDVSTIPNLARSLFKAVLN---------EGVSLFAAFVMLLAFQK 238

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE 
Sbjct: 239 KGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELEF 298

Query: 274 AY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
           A+   A    P    GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 299 AFIDLAFSYCP-ALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 358 GADLTNFFENHVTEYETGG 376


>gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus]
          Length = 274

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 27/280 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  IK  L FFASS+
Sbjct: 14  IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 71  GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA+WA ++  +               +   +  V +   EG++F   FA I  
Sbjct: 131 TMECVKKKADWARKWISS--------------NKVYGERVVAFAAVEGIFFSGSFAAIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           + +   M G+    + I RDE LH +F   +         HL     ++   +++ +A  
Sbjct: 177 IKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSKEVITSIIIDAVN 229

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +E  +    +P   +G+N     QY++F+A+R   ++G E
Sbjct: 230 IEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCE 269


>gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
 gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
          Length = 374

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 25/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA E      N HW   E+ + DD+  WK    L D E+  I + L  F   +  
Sbjct: 73  PFHYPWAVELRSLHENMHWTEKEISLADDVTDWKI-GKLLDVEKKFITQILRLFTQLDVS 131

Query: 96  VA---NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           V    +N  + I++   N E R  L   A  E  H   +  +  +LGL E + ++ + + 
Sbjct: 132 VGQLYHNTFIPIFK---NNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKY 187

Query: 153 PSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             +T K ++ +   T T+ + +F+               V  V  EG+  +  F  +L+ 
Sbjct: 188 KQMTDKTDFMSDMRTDTIGNVAFS--------------LVKAVYNEGVSLFAAFVMLLNF 233

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R   M G+ +  ++ +RDE++H+     +   I  E P + TK+F +   T+  E   L
Sbjct: 234 QRFGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKAVETLQQEVLKL 293

Query: 272 EIAYAHET-MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E A+     +      L       Y+++I  RR  Q+GL       +NP  W+S +I  +
Sbjct: 294 ETAFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTD-LQNPILWVSWLISGR 352

Query: 331 KEKNFFETRVTEYQQGA 347
              NFFE RVTEY  G 
Sbjct: 353 DVTNFFENRVTEYDVGG 369


>gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 29/335 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y W+   Y     N W+P  + +  D+  +     LTD+ER      L +
Sbjct: 37  TNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDVTEY---GHLTDEERYAYDGILSY 93

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   +   ++ PE    +  Q  +EA+H+ ++QY+I ++   +  GE++
Sbjct: 94  LTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQSYQYLIETIIPSDRRGEVY 152

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + +R    +  +  + A  Y Q +         K   + +   L   Y++ E ++FY GF
Sbjct: 153 DFWRTDKVLKDRCEFIASLYQQYID--------KQTTESYFIALLADYLL-ESLYFYNGF 203

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L     M G A+ ++ I RDE  H+     +I +     PH   + ++     M 
Sbjct: 204 IFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMAIFPHSVEQIYE-----MF 258

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322
             A   E  + +  +    +G+   S EQY +++AN R   IGLEPL+   KY ++P+  
Sbjct: 259 DSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIRLKAIGLEPLYREEKYNKSPYNH 318

Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           +    D KKE     NFFE  VT Y   + L  WD
Sbjct: 319 LERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353


>gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 343

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+  E+PM  D   +     L  +E+   K N+   A  +S+     V  + R+ ++ 
Sbjct: 47  NHWIADEIPMAKDAQQFAL---LDPEEQRTFKINISLLAVLDSM-QTMFVGDVKRYFTDS 102

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++S+    ++ E+F  ++  P +  +  +     Q  
Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNF 162

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    +   Q F + L V  ++ EG++FY+ FA   +L R  KM+G ++   YI R
Sbjct: 163 RD-------EPTPQSFFEAL-VADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQR 214

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+ I+ P L TKE    +   +  A  LE  +AH T+ K   G++ 
Sbjct: 215 DENQHCYFFAEVFKQLLIDYPELNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDL 273

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y+++IAN+R   +GLE  +   + N  PW+    D  L   K +FFE +   Y
Sbjct: 274 NELSDYIKYIANKRLTLMGLEKAYAGVDINCMPWIKPFSDEALNATKTDFFEAKSRNY 331


>gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group]
          Length = 244

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 26/240 (10%)

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQ 167
            E R +   Q   E +HS  +  ++ +    G ++  LF     VP++  KA+WA+++  
Sbjct: 7   AEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADWAMRWI- 65

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  + F + L  F  V EG++F   F  I  L +   M G+    + I
Sbjct: 66  ------------DGGERFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELI 112

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE LH +F   + + ++        K  + + R ++ +A  +E  +  + +P   VG+
Sbjct: 113 SRDEGLHCDFACLLYDLLR-------GKLDEARVREIVADAVDIEREFVCDALPVALVGM 165

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 166 NGDLMSQYIEFVADRLLMALGCKKMYN-VANPFDWM-ELISLQGKTNFFEKRVGDYQKAS 223


>gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
 gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
          Length = 347

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 142/310 (45%), Gaps = 14/310 (4%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   ++ Y +   N W   E+ MQDD+  W        D  L I   L    S ++  
Sbjct: 37  IAYPHMYDLYQTLLANFWKAQEINMQDDIKQWAELTPAEQDVFLRINTQLASLDSLQTPT 96

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
            + ++     ++++P  +      A +EAVH+ ++ Y+++SL +++ E    ++E     
Sbjct: 97  MSQVM----DYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSL-VNQQEQTRRFQE----- 146

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           AK +  +Q    +   ++    +    + L +L V  +  EG++FY GFA    L R  K
Sbjct: 147 AKEDPLIQRRNDVILSAYERFRQHPSPQHLFELAVQSLNLEGVYFYAGFAFFYHLARQQK 206

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M+  +    YI RDE  H  F    +  +  ++P L T+E  Q     +  A  LE  +A
Sbjct: 207 MMKTSTMISYIQRDEMQHAYFMSQFVRILLTDHPELNTRENVQYVYDAMASAAGLEQEWA 266

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM---SEVIDLKKEK 333
              +     G++      Y++++ N+R  Q+GL  LF   +NP PW+   S+ +  + + 
Sbjct: 267 -AVILADIDGIDLGEFNGYVEYLVNKRLRQLGLSNLFPERDNPMPWIHVFSDTMMNQTKS 325

Query: 334 NFFETRVTEY 343
           +FFE +   Y
Sbjct: 326 DFFEQKSRSY 335


>gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36]
 gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36]
          Length = 352

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 23/278 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P E+ M++D  +W S   +  D  L +   L    S +       +L + R  +N 
Sbjct: 57  NFWRPVEIKMKEDEKMWDSLTPIEQDTFLRVGTALACLDSLQV----KAILEVIRFTTNS 112

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQT 168
                    A +EA H+ ++ YI +SL     + + FN   + P +  +    L  Y   
Sbjct: 113 ALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRNKLVLDVYEDF 172

Query: 169 LSSPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
             +PS            LQ+LF   V  +  EG++FY+GFA    L    KM+  +    
Sbjct: 173 AENPS------------LQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMKSSTMIS 220

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           YI RDE  H  F   +I ++  ENP L T+E  Q     L EA   E  +A E +     
Sbjct: 221 YIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEIL-ADIE 279

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           GL+    + Y++++AN+R  Q+G++ +++   NP PW+
Sbjct: 280 GLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWI 317


>gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-003]
          Length = 336

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 21/307 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +      A  LE  
Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEK 333
           ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W+    D     
Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYAD----- 320

Query: 334 NFFETRV 340
           NF ET+ 
Sbjct: 321 NFTETKT 327


>gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sibiricum 255-15]
 gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum
           255-15]
          Length = 347

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 143/316 (45%), Gaps = 20/316 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y    +N W+P E+ M  D+  W   N L++ E+   KR +G  +  +S V
Sbjct: 35  IAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRIIGLLSILDS-V 90

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +L      S+      L   A +E VH+ ++ Y+++SL    ++  +F++ ++   
Sbjct: 91  QTRYILESAMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLSEQNRIFDIAKDDDM 150

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  + L   +   +        D   E      V  +V EG+ FY+GFA   +L R 
Sbjct: 151 VMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGINFYSGFAFFYNLARH 202

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEI 273
            KMVG +    YI RDE  H  F   ++  +  E+P +     F +        A  LEI
Sbjct: 203 QKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTKFVYATFERAVDLEI 262

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK-- 330
            ++ E + +   GL+      Y++++AN+R   IGL+ L++ + E+  PW+    D    
Sbjct: 263 EWS-EYVLRDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDEDVMPWIRAYSDDSMN 321

Query: 331 -KEKNFFETRVTEYQQ 345
             + +FFE +   Y +
Sbjct: 322 ATKSDFFEQKSRSYAK 337


>gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
          Length = 354

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D   +     L+  E+      +G  A+ +S  
Sbjct: 44  IPYPSFYRAYKELSTNFWIPDEVDMKSDARQYGE---LSAREKNAFDSIIGLLATLDS-P 99

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 100 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHPT 159

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 160 ILRRNAPIMA--------AYDDFMREKTAETLLRALIQSSILEGINFYSGFAYFYNLVRQ 211

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  +VI  I  ENP L T E           A  LE  
Sbjct: 212 NRMAGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDELADYVHLAFRHAIELETQ 271

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L+ + T+N  PW+    D   + 
Sbjct: 272 WTGEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIESLYTETTDNVMPWIRAYADNFTET 330

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 331 KTDFFEMRNASYKK 344


>gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
 gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 352

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 27/334 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P  + +  D+  + +   LTDDER      L +
Sbjct: 34  TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDVTDYAN---LTDDERYAYDGILSY 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   +   +++
Sbjct: 91  LTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPDRRTQVY 149

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           + +R    +  +  +  +  Q            DA  E      +   + EG++FY GF 
Sbjct: 150 DFWRTDKVLKDRCEFIAKLYQKY--------IDDATPENYFIALMADFLLEGLYFYNGFI 201

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
              +L     M G A+ ++ I RDE  H+     +I + +   PH   + ++     M  
Sbjct: 202 YFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MFD 256

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
            A   E  + +  +    +G+   S E+Y +++AN R   IGLEPL+   KY ++P+  +
Sbjct: 257 MAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYNKSPYTHL 316

Query: 324 SEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
               D KKE     NFFE  VT Y   + +  WD
Sbjct: 317 ERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus
           flavithermus WK1]
 gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus
           WK1]
          Length = 345

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 23/321 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY   ++ Y     N W P E+ M DD+  W   + L++ ER      +G  +  +S V
Sbjct: 34  IKYSHFYDIYKMLLGNFWTPFEINMSDDIKQW---HALSERERDAFLHIIGLLSILDS-V 89

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
             N + A+  ++++P  +        +E VH+ ++ Y++ S+    ++   F M R  P 
Sbjct: 90  QPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYVLASIEKLSEQHRAFEMARTNPH 149

Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           I  +    ++ Y      P+  T  +           V  +V EG+ FY+GFA   +L R
Sbjct: 150 IYKRNEHVIRVYEAFREQPTVETFCR---------ALVASLVLEGINFYSGFAFFYNLAR 200

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSRTMLHEATLLE 272
             KM+  +    YI +DE  H  F   ++  +  ENP +     F       + EA   E
Sbjct: 201 NQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQIDENGAFSAWIYDYIDEAIRYE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM----SEVID 328
             ++   + +   G++    E+Y++++ N+R   +GL+  +   EN  PW+     E ++
Sbjct: 261 TEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDDRYDADENSMPWIRVFSDENVN 319

Query: 329 LKKEKNFFETRVTEYQQGAEL 349
           L K  +FFE R   Y +  ++
Sbjct: 320 LGK-TDFFEARPRSYTKTTDV 339


>gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 238

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 25/227 (11%)

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS T+  +I +   D  E   +F     VPS+  KA WAL +               
Sbjct: 2   ENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIND------------ 49

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D  F + L  F  V EG+ F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 50  -DNCFSERLIAFACV-EGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACL 107

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + N +       +T+   ++   ++  A  +E  +  E++P   +G+N+    +Y++F+A
Sbjct: 108 LYNMMH------YTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVA 161

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +R    +G   L+  T NPF WM ++I L+ + NFFE RV EYQ+G 
Sbjct: 162 DRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGG 206


>gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
 gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
          Length = 321

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 33/329 (10%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y WA   Y     N W+P  + +  D+  +     LTDDER      L +    +S+ 
Sbjct: 11  VRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDSVQ 67

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154
             NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   E   +++  +R    
Sbjct: 68  TCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTDKL 126

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSL 211
           +  +  +  +  Q           K  D    ++ F+  +   + EG++FY GF    +L
Sbjct: 127 LRDRCEFIAKLYQ-----------KYIDDATTENYFIALMADFLLEGLYFYNGFIYFYNL 175

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G A+ ++ I RDE  H+     +I + +   PH   + ++     M   A   
Sbjct: 176 ASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MFDMAVNY 230

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVID 328
           E  + +  +    +G+   S E+Y +++AN R   IGLEPL+   KY+++P+  +    D
Sbjct: 231 ECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSD 290

Query: 329 LKK----EKNFFETRVTEYQQGAELK-WD 352
            KK    + NFFE  VT Y   + L  WD
Sbjct: 291 TKKAAHTKANFFEATVTSYVMSSGLTGWD 319


>gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
 gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
          Length = 346

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 33/316 (10%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           HW+  E  + DD+  W++++  +DDER  IK  L  F   + +VA+N          N E
Sbjct: 36  HWVKQEAELGDDVNDWRNRS--SDDERSFIKEILTVFTQGDVVVADNYKSIFIPAFKNNE 93

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSS 171
              +L+  A  E +H   +     + GL +  +F  +RE   +  + +  A QY      
Sbjct: 94  VSNWLVGVAAREVIHQDAYAMANETFGLPD-SMFGRFREYQEMRERNDLMATQY-----D 147

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN---------KMVGIAE 222
           PS   G        L    V     EG+     FA +L   R +         +  G+ +
Sbjct: 148 PSMVEG--------LAMGLVHTTFNEGVCLMGAFANLLQFNRFDVPGFNGYRGRYKGLTK 199

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             ++ +RDE +H+     +  ++  E+P L T E +++   +       E  +      K
Sbjct: 200 INKWSLRDEGIHVEGSSLLYRKVMGEHPWLMTDEHKKQVYDLARAVVAAEDLFLDLAFKK 259

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI---DLKKEKNFFETR 339
             + +     + Y++++ NRR  Q+G + +F+    P PW+ E++     K++ NFFETR
Sbjct: 260 YQLTMTKDESKAYVRYMMNRRLLQLGHKAIFEVQGIPCPWIEEILGGAGGKRDSNFFETR 319

Query: 340 VTEYQQG----AELKW 351
           V  YQ       EL W
Sbjct: 320 VDNYQASGALVGELDW 335


>gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 346

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D   +   +G    E+      +G  A+ +S  
Sbjct: 36  IPYPSFYRAYKELSTNFWIPDEVDMKADARQYGELSGR---EKNAYDSIIGLLATLDS-P 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 92  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLPNQNRVFELARTHPT 151

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   ++ R 
Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  ENP L T E           A  LE  
Sbjct: 204 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQAFEHAIELETQ 263

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E +  G  G++     +Y+++ AN+    +G+E L+   T+N  PW+    D   + 
Sbjct: 264 WSSEVL-DGIDGIDVEEMTRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 323 KTDFFEMRNASYKK 336


>gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis]
          Length = 214

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 20/219 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A ++   LLP+KY   +E Y  A  ++W   EV +  D+  W+    LTDDER  + 
Sbjct: 4   ILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWRK---LTDDERHFVS 60

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+     + +  PE R +   Q+  EAVHS  +  ++     D  
Sbjct: 61  YVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIRDPD 120

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF+    +P +  KA WA+++ +  SS  F             +  V Y   EG+ 
Sbjct: 121 ERDLLFHAVDTIPCVQKKAQWAMKWIE--SSSCFA------------ERLVAYACVEGIH 166

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           F   F  I  L +   M G+    + I RDE LH +F  
Sbjct: 167 FSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFAC 205


>gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
 gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
          Length = 352

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 37/339 (10%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P ++ +  D+  +   + LTD ER      L +
Sbjct: 34  TNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVTDY---HNLTDSERRAFDGILSY 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   N+   I   ++ PE    +  Q  +E +H+ ++QY+I ++   +    ++
Sbjct: 91  LTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGMHNQSYQYMIETIIPSDRRSAVY 149

Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPS----FTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           + +R    +  +  + A  Y + + +P+    FTT   D              + EG++F
Sbjct: 150 DFWRTDKVLRDRCEYIASNYQRYIDNPTPENYFTTLVAD-------------YLLEGLYF 196

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GF    +L     M G A+ ++ I RDE  H+     +I +      H     ++   
Sbjct: 197 YNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPEAMATFDHSVDHIYE--- 253

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318
             M+  A   E  + +  +    +G+   S E Y +++AN R   IGLEPL+K   Y ++
Sbjct: 254 --MVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRLQAIGLEPLYKGDQYKKS 311

Query: 319 PFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           P+  +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 312 PYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350


>gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
 gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
          Length = 343

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+  E+PM  D   +     L  +E+   K N+   A  +S+     V  + R+ ++ 
Sbjct: 47  NHWIADEIPMSKDAQQFPR---LDPEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++S+    ++ E+F  ++  P +       L+  Q +
Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVL-------LERNQFI 155

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S+         + Q F + + V  ++ EG++FY+ FA   +L R  KM+  ++   YI R
Sbjct: 156 SNIYQNFRDNPSPQSFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+  + P L TKE        +  A  LE  +AH T+     G++ 
Sbjct: 215 DENQHCYFFAEVFKQLLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 273

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y+++IANRR   +GLE  ++  + N  PW+    D  L   K +FFE +   Y
Sbjct: 274 NELSDYIKYIANRRITMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331


>gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 349

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 95  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    +D   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 II-KRNAPIM-------GAYEDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETV 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 326 KTDFFEMRNASYKK 339


>gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 30/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W  Y    +  W   EV M  D+  W++   +   +R   K+ L FF  ++
Sbjct: 14  IFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVVAD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+   
Sbjct: 71  EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + P I   A W  Q+   + +              L +  V +   EG+ F   F  I  
Sbjct: 131 KHPIIRKMAQWVQQWMDPVKNS-------------LGERLVGFAAVEGILFQNHFVAIQF 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA  
Sbjct: 178 LKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------EKIIHKILKEAVE 231

Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           L    I+YA +       G +     QY+++  +  C  +  + ++K  ENPFP M++  
Sbjct: 232 LVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYK-VENPFPQMTKFF 290

Query: 328 DLKKEK-NFFETRVTEYQ 344
             + EK NFFE R T+YQ
Sbjct: 291 LNEVEKTNFFELRPTQYQ 308


>gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus
           Benin 97/1]
          Length = 327

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%)

Query: 34  LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K L +    W   EV M  D+  W++   +   +R   K+ L FF  
Sbjct: 14  IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148
           ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+ 
Sbjct: 69  ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             + P I   A W  Q+              D D+  L +  V +   EG+ F   F  I
Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 175

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA
Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEA 229

Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             L    I YA +       G +     QY+++  +  C  +  + ++K   NPFP M++
Sbjct: 230 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288

Query: 326 VIDLKKEK-NFFETRVTEYQ 344
               + EK NFFE R T+YQ
Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308


>gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus
           OURT 88/3]
 gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75]
 gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1]
          Length = 334

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%)

Query: 34  LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K L +    W   EV M  D+  W++   +   +R   K+ L FF  
Sbjct: 21  IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148
           ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+ 
Sbjct: 76  ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             + P I   A W  Q+              D D+  L +  V +   EG+ F   F  I
Sbjct: 136 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 182

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA
Sbjct: 183 QFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEA 236

Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             L    I YA +       G +     QY+++  +  C  +  + ++K   NPFP M++
Sbjct: 237 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 295

Query: 326 VIDLKKEK-NFFETRVTEYQ 344
               + EK NFFE R T+YQ
Sbjct: 296 FFLNEVEKTNFFELRPTQYQ 315


>gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803]
 gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803]
          Length = 355

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 154/336 (45%), Gaps = 31/336 (9%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87
           +++ QL  ++Y WA   Y     N W+P  + +  D+   W     LT++ER      L 
Sbjct: 37  TNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDVTDYW----NLTNEERYAFDGILS 92

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145
           +    +S+   NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   E   ++
Sbjct: 93  YLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQSYQYMIETIIPTEKRDKV 151

Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +  +R    +  +  + A+ Y + +  P+         + +   L   Y++ EG++FY G
Sbjct: 152 YEFWRTDRVLKERCEYIAMLYQKYVDHPT--------QENYFIALMADYLL-EGLYFYNG 202

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F    +L     M G A+ ++ I RDE  H    + +  ++  E   ++T    Q    M
Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSH----VRLYQKLIPEAMQVFTHSTDQIYE-M 257

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321
             +A   E  + +  +    +G+   S EQY +++AN R   IGL+PL+   +Y ++P+ 
Sbjct: 258 FDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSRLRAIGLDPLYTDARYGKSPYT 317

Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
            +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 318 HLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353


>gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius]
          Length = 246

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W S   L D+ER  I   L FFA+S+
Sbjct: 13  IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS---LKDEERYFISHVLAFFAASD 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 70  GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDFLFNAIE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +  KA+WAL +           G K+A      +  V +   EG++F   FA I  
Sbjct: 130 TMPCVKKKADWALNW----------IGDKNAQ---YGERVVAFAAVEGIFFSGSFASIFW 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   +         HL  K  ++  + ++  A  
Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSEETVKKIIVNAVA 229

Query: 271 LEIAYAHETMPKGFVGL 287
           +E  +  + +P   +G+
Sbjct: 230 IEQEFLTDALPVKLIGM 246


>gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
 gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
          Length = 370

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+  E+PM  D   +     L  +E+   K N+   A  +S+     V  + R+ ++ 
Sbjct: 74  NHWIADEIPMSKDAQQFPR---LDPEEQRTFKINISLLAVLDSM-QTMFVGDVKRYFTDS 129

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++S+    ++ E+F  ++  P +       L+  Q +
Sbjct: 130 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVL-------LERNQFI 182

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S+         + Q F + + V  ++ EG++FY+ FA   +L R  KM+  ++   YI R
Sbjct: 183 SNIYQNFRDNPSPQSFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 241

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+  + P L TKE        +  A  LE  +AH T+     G++ 
Sbjct: 242 DENQHCYFFAEVFKQLLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 300

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y+++IANRR   +GLE  ++  + N  PW+    D  L   K +FFE +   Y
Sbjct: 301 NELSDYIKYIANRRITMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 358


>gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
 gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
          Length = 343

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           NHW+  E+PM  D   + +   L  +E+   K N+   A  +S+     V  + R+ ++ 
Sbjct: 47  NHWIADEIPMSKDAQQFPT---LDSEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                      +E VH+ ++ Y+++S+  D+   E+F  ++  P +       L+  Q +
Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSDQEQKEIFEYWKHDPVL-------LERNQFI 155

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S          + Q F + + V  ++ EG++FY+ FA   +L R  KM+  ++   YI R
Sbjct: 156 SDIYQNFRDNPSPQTFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE+ H  F  +V  Q+  + P L ++E        +  A  LE  +AH T+     G++ 
Sbjct: 215 DENQHCYFFAEVFKQLLKDFPELNSQENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 273

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343
                Y+++IANRR   +GLE  ++  + N  PW+    D  L   K +FFE +   Y
Sbjct: 274 NELGDYIKYIANRRITMMGLEKAYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331


>gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA WA
Sbjct: 6   KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQWA 65

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++              D  + F + L  F  V EG++F   F  I  L +   M G+  
Sbjct: 66  LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +P 
Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV E
Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-AANPFDWM-ELISLQGKTNFFEKRVGE 222

Query: 343 Y 343
           Y
Sbjct: 223 Y 223


>gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small
          Length = 334

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%)

Query: 34  LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K L +    W   EV M  D+  W++   +   +R   K+ L FF  
Sbjct: 21  IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148
           ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+ 
Sbjct: 76  ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             + P I   A W  Q+              D D+  L +  V +   EG+ F   F  I
Sbjct: 136 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 182

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA
Sbjct: 183 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------EKIIHKILKEA 236

Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             L    I YA +       G +     QY+++  +  C  +  + ++K   NPFP M++
Sbjct: 237 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 295

Query: 326 VIDLKKEK-NFFETRVTEYQ 344
               + EK NFFE R T+YQ
Sbjct: 296 FFLNEVEKTNFFELRPTQYQ 315


>gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus]
          Length = 192

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 22/198 (11%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KA+WALQ+              D +  F + L  F  V EG++F   
Sbjct: 17  LFNAIETLPYVKRKADWALQWIS------------DTNSTFAERLVAFAAV-EGIFFSGS 63

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH NF   + +Q++        K    + + +
Sbjct: 64  FAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQ-------KKPSADRVKDI 116

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G+  +++  ENPF +M 
Sbjct: 117 ITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLGIPKVYE-AENPFDFM- 174

Query: 325 EVIDLKKEKNFFETRVTE 342
           E I L+ + NFFE RV E
Sbjct: 175 EFISLEGKTNFFEKRVAE 192


>gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA WA
Sbjct: 6   KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQWA 65

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++              D  + F + L  F  V EG++F   F  I  L +   M G+  
Sbjct: 66  LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +P 
Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV E
Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRVGE 222

Query: 343 Y 343
           Y
Sbjct: 223 Y 223


>gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA WA
Sbjct: 6   KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQWA 65

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++              D  + F + L  F  V EG++F   F  I  L +   M G+  
Sbjct: 66  LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +P 
Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV E
Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-AANPFDWM-ELISLQGKTNFFEKRVGE 222

Query: 343 Y 343
           Y
Sbjct: 223 Y 223


>gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
 gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
          Length = 347

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 24/352 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N +++ +     ++V  L   +YGWA   Y +   + W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DYAN---LIPGERRALKGILSYLNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+    ++ E+++ +++   +  +  +   Y Q L++           + 
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN-------NPTGEN 177

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +   L   Y++ EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 178 YYMALIGDYLL-EGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +  +      + +   + H     EI + +       +G++  S E Y +++AN R 
Sbjct: 237 ATTKFSYS-----EDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291

Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352
             IG+  ++   ENP+    W       K +  FFET VT Y Q   +K WD
Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343


>gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M12]
 gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 349

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 140/315 (44%), Gaps = 20/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95
           + Y   +  Y     N W+P EV M+ D    K + G L+  E+      +G  A+ +S 
Sbjct: 39  IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 93

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153
                +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P
Sbjct: 94  PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 153

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +I  +    +Q        ++    ++   E L    +   + EG+ FY+GFA   +L R
Sbjct: 154 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 205

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N+M G  +   +I RDE  H  F  +VI  I  ENP L T             A  LE 
Sbjct: 206 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 265

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330
            +  E +  G  G++     +Y+++ AN+    +G+E L+ + T+N  PW+    D   +
Sbjct: 266 QWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIETLYTETTDNVMPWIRAYADNFTE 324

Query: 331 KEKNFFETRVTEYQQ 345
            + +FFE R   Y++
Sbjct: 325 TKTDFFEMRNASYKK 339


>gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp.
           ATCC 51142]
 gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 347

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 156/350 (44%), Gaps = 25/350 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N + + +     ++V  L   +YGWA   Y +    +W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DYVN---LIPGERRALKGILSYLNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+    ++ E+++ +++   +  +  +   Y QTL+            + 
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD-------NPCGET 177

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +   L   Y++ EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 178 YFMALIGDYLL-EGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATL-LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            K +        + +   T L   T+  EI + +       +G++  S E Y +++AN R
Sbjct: 237 AKTKF------SYSEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLR 290

Query: 304 CHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              IG+  ++   ENP+    W       K +  FFET VT Y Q   +K
Sbjct: 291 LKAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340


>gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 349

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSSREKNAYDSIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 95  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    +D   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 II-KRNAPIM-------GAYEDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 326 KTDFFEMRNASYKK 339


>gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   + +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus]
          Length = 219

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 22/201 (10%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KA+WAL +   +SS     G +           V +   EG++F   
Sbjct: 23  LFNAIDNLPCVKKKADWALNW---ISSKQANFGER----------VVAFAAVEGIFFSGS 69

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +         +L  K  Q++   +
Sbjct: 70  FASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEI 122

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + EA L+E  +  + +P   +G+N     QY++F+A+R   ++G++ ++  T+NPF +M 
Sbjct: 123 IREAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM- 180

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
           E I L+ + NFFE +V EYQ+
Sbjct: 181 EFISLEGKTNFFEKKVGEYQK 201


>gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 347

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFELARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    +D   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYDDFLRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 357

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 29/323 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA+E +    N HW+ TE+ MQ D+  W +KN LTD E+ +I   L  FA +E+ 
Sbjct: 12  PFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDW-NKN-LTDQEKNVIGDILKGFAQTETE 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           V N     I +    PE +  ++ QAF   E +H+  + Y+   LGLD    F+ + E  
Sbjct: 70  VGNYWSEMIPKWFPIPEIK--MMGQAFGSFETIHAAAYSYLNDILGLDN---FHAFLEDD 124

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            I  K        ++L     +   K   +E  + + +F    EG+  ++ FA +LS  +
Sbjct: 125 VIMNK-------LKSLMDVRNSDHGKYNKEEIARSVALFSAAAEGVQLFSSFAVLLSFRK 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
           +N++ G+ +Q  + +RDESLH   G  +      EN  L  KE  ++S   ++    L +
Sbjct: 178 SNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKGL--KEIVERS---VYHGVDLAL 232

Query: 274 AYAHETMPKGFVGLNAPSCEQ-----YMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
                 + K F G +  + ++     +M+  AN +  ++G    +       +   W   
Sbjct: 233 KNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFYI 292

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I  +++ +FF+ R T Y +  E
Sbjct: 293 TISGEQQTDFFDNRETGYSKPNE 315


>gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 347

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    +D   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. B100]
 gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris]
          Length = 347

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    +D   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia
           psychrerythraea 34H]
 gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea
           34H]
          Length = 376

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A W+S   LTD E+ +   NL +    +S+ A ++   +   +S PE 
Sbjct: 49  WRPEEVDVSKDRADWQS---LTDSEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------T 166
             ++   AF E +HS ++ +I+ +L  + GE+F+     P+I  +A+   ++       T
Sbjct: 106 ETWVETWAFSETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILKRASSIAKFFDDVILTT 165

Query: 167 QTLSSPSFTT-----GTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217
           Q L S    T      T +     L++     V      E + FY  FA   +      +
Sbjct: 166 QLLQSQGEGTYEVEGKTVEVSTRKLKERLFLAVCSVNALEAIRFYVSFACSFAFAERELL 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPH--LWTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N  +   ++P   + ++E + +   +  +    E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNNWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLNA    QY+++I+N+R   IG    F    NP PWM+
Sbjct: 286 EWAQYLFKDGSMIGLNADILNQYIEYISNQRLTAIGFGAPFDIKSNPLPWMN 337


>gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 124

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           YIMRDE LH +FGI V  QI +E          Q  R M  E    E AYA   +    +
Sbjct: 1   YIMRDEVLHASFGIRVAKQIMLEEN---IAPDPQAIREMWDECEAAEDAYAGYILRDPIL 57

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G +        +++ANRR  QIGL   +   E   PW+ E  +L+KEKNFFET VTEYQ 
Sbjct: 58  GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117

Query: 346 GAELKWD 352
           G  L WD
Sbjct: 118 GGALNWD 124


>gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa 9a5c]
 gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa Temecula1]
 gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           9a5c]
 gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           Temecula1]
          Length = 346

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 20/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95
           + Y   +  Y     N W+P EV M+ D    K + G L+  E+      +G  A+ +S 
Sbjct: 36  IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153
                +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P
Sbjct: 91  PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 150

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +I  +    +Q        ++    ++   E L    +   + EG+ FY+GFA   +L R
Sbjct: 151 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 202

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N+M G  +   +I RDE  H  F  +VI  I  ENP L T             A  LE 
Sbjct: 203 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 262

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330
            +  E +  G  G++     +Y+++ AN+    +G++ L+ + T+N  PW+    D   +
Sbjct: 263 QWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNVMPWIRAYADNFTE 321

Query: 331 KEKNFFETRVTEYQQ 345
            + +FFE R   Y++
Sbjct: 322 TKTDFFEMRNASYKK 336


>gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M23]
 gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23]
 gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 349

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 20/315 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95
           + Y   +  Y     N W+P EV M+ D    K + G L+  E+      +G  A+ +S 
Sbjct: 39  IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 93

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153
                +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P
Sbjct: 94  PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 153

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +I  +    +Q        ++    ++   E L    +   + EG+ FY+GFA   +L R
Sbjct: 154 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 205

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N+M G  +   +I RDE  H  F  +VI  I  ENP L T             A  LE 
Sbjct: 206 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 265

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330
            +  E +  G  G++     +Y+++ AN+    +G++ L+ + T+N  PW+    D   +
Sbjct: 266 QWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNVMPWIRAYADNFTE 324

Query: 331 KEKNFFETRVTEYQQ 345
            + +FFE R   Y++
Sbjct: 325 TKTDFFEMRNASYKK 339


>gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia R551-3]
 gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 346

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D   +   N     E+      +G  A+ +S  
Sbjct: 36  IPYPSFYRAYKELSTNFWIPDEVDMKLDARQYGELNAR---EKNAYDSIIGLLATLDS-P 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 92  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLSNQNRIFEIARTHPT 151

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   ++ R 
Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  ENP L T E           A  LE  
Sbjct: 204 NRMNGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQSFEHAIELETQ 263

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E +  G  G++     +Y+++ AN+    +G+E L+   T+N  PW+    D   + 
Sbjct: 264 WSSEVL-DGIDGIDVDEMVRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 323 KTDFFEMRNASYKK 336


>gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia K279a]
 gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain
           [Stenotrophomonas maltophilia K279a]
          Length = 346

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D   +   N     E+      +G  A+ +S  
Sbjct: 36  IPYPSFYRAYKELSTNFWIPDEVDMKLDARQYGELNAR---EKNAYDSIIGLLATLDS-P 91

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 92  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLPNQNRIFEIARTHPT 151

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   ++ R 
Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  ENP L T E           A  LE  
Sbjct: 204 NRMNGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQSFEHAIELETQ 263

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           ++ E +  G  G++     +Y+++ AN+    +G+E L+   T+N  PW+    D   + 
Sbjct: 264 WSSEVL-DGIDGIDVDEMVRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 323 KTDFFEMRNASYKK 336


>gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 34/320 (10%)

Query: 34  LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K L +    W   EV M  D+  W++   +   +R   K+ L FF  
Sbjct: 14  IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148
           ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+ 
Sbjct: 69  ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             + P I   A W  Q+              D  +  L +  V +   EG+ F   F  I
Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEGILFQNHFVAI 175

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA
Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------EKIIHKILKEA 229

Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             L    I+YA +       G +     QY+++  +  C  +  + ++K   NPFP M++
Sbjct: 230 VELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288

Query: 326 VIDLKKEK-NFFETRVTEYQ 344
               + EK NFFE R T+YQ
Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308


>gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
 gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
          Length = 387

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 75  PFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270
           KM G+ +  ++ +RDE++H+     +   +  E P + TK+      +   R    E   
Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELEEAF 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328
           +++A+  E  P    GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 347

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 65

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           N    E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G 
Sbjct: 1   NGAGMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGG 60

Query: 348 ELKWD 352
            L WD
Sbjct: 61  ALSWD 65


>gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira
           crunogena XCL-2]
 gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 377

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 55  WRPEEIDLSSDRGEYA---NLPEHEKHVFISNLKYQTLLDSVQGRSPNVALLPLVSIPEL 111

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + +   S+T   +  +  T
Sbjct: 112 ETWIETWSFSETIHSRSYTHIIRNIVSDPSLVFDDIVANEEIVKRAISVTVYYDKLINLT 171

Query: 167 QTLSSPSFTTGTKDA-DQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + +      T DA  +E    LF+  V   V E + FY  FA   S    + M G A+
Sbjct: 172 NRMYAEEIDLETNDAFRKEIKTALFLTIVSVNVLEAIRFYVSFACSFSFAERSLMEGNAK 231

Query: 223 QYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEIAYAHE 278
             + I RDE+LHL+    +IN +    ++P +    KE ++K   +  EA   E  +A  
Sbjct: 232 IIKLIARDEALHLSGTQHLINILSEGKDDPEMMEIAKENEEKVYEIFREAAEQEKEWADY 291

Query: 279 TMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
               G  +GLNA   + Y+++I N R   I L P+F+   NP PWM+
Sbjct: 292 LFKDGSMIGLNASILKDYVEYITNTRIKAIKLNPIFENKSNPLPWMN 338


>gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           A   + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 AFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
 gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506]
 gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
          Length = 387

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 75  PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270
           KM G+ +  ++ +RDE++H+     +   +  E P + TK+      +   R    E   
Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELEEAF 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328
           +++A+  E  P    GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata]
          Length = 335

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 30/327 (9%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N R  V  + P+KY   W  Y       W   ++ +  D+  W++   L+  ++    
Sbjct: 12  MENKRRFV--MFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQKEFFG 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141
             L   + ++++V  NIV      L NPE + +   Q   E ++   +  ++ +L   +D
Sbjct: 67  NYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALFTSVD 126

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF    +   + AK+ WA ++                D+    +  V     EG++ 
Sbjct: 127 NIPLFKAVCQQEEVKAKSEWAHRWVFD-------------DESLYAERLVASAAREGIFM 173

Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
              FA +  L +    M G+A    +I RD   + +F   +         HL TK   + 
Sbjct: 174 SGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLF-------AHLKTKPNPKI 226

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E A+   +MP   +G++    +QY++ +A++     G E  +  T NPF
Sbjct: 227 IEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT-NPF 285

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
           P+M E   + K  NFFE +V++YQ+ +
Sbjct: 286 PFMEEATSIGK-TNFFEKKVSDYQKAS 311


>gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
 gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
          Length = 347

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 388

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 44/327 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D A +     LTD ++ +   NL +    +S+      +A   + S PE 
Sbjct: 58  WRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQGRAPGMAFIPYCSLPEL 114

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
              +    F E +HS ++ YII ++  D  ELF+      +I ++A           N+A
Sbjct: 115 EGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILSRAESVTKSYDDFINYA 174

Query: 163 LQYTQT------LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            +Y Q+      + S   +  T+   +++L        + EG+ FY  FA   + G    
Sbjct: 175 HEYDQSNAWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGIRFYVSFACSFAFGENKL 234

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT------------KEFQQKSRTM 264
           M G A+    I RDES HL     V+ Q  ++N   WT            +E Q+    M
Sbjct: 235 MEGSAKILSLIARDESQHL-----VLTQQILKN---WTEGKDDPEMKEIAEEEQETVEQM 286

Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321
                  E A+A+    +G  +GLN      Y+++IANRR   IGL+P++      NP P
Sbjct: 287 FKACVDEEKAWANYLFKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYDQPLRNNPLP 346

Query: 322 WMSEVIDLKKEKNF-FETRVTEYQQGA 347
           W    ++ K ++N   ET +  Y  G 
Sbjct: 347 WTEHWLNSKGQQNAPQETEIESYVVGG 373


>gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 347

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 34/320 (10%)

Query: 34  LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           + P+++   W W K L +    W   EV M  D+  W++   +   +R   K+ L FF  
Sbjct: 14  IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKSQREFYKQILAFFVV 68

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148
           ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+ 
Sbjct: 69  ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             + P I   A W  Q+              D  +  L +  V +   EG+ F   F  I
Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEGILFQNHFVAI 175

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
             L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA
Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------ERIIHKILKEA 229

Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
             L    I YA +       G +     QY+++  +  C  +  + ++K   NPFP M++
Sbjct: 230 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288

Query: 326 VIDLKKEK-NFFETRVTEYQ 344
               + EK NFFE R T+YQ
Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308


>gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
 gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
          Length = 344

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 33/337 (9%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++ QL  ++Y WA   Y     N W+P ++ +  D+  +   + LT  ER      L +
Sbjct: 26  TNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDVTDY---SNLTPAERYAYDGILSY 82

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
               +S+   NI   I   ++ PE    +  Q  +E +H+ ++QYII ++   E   +++
Sbjct: 83  LTFLDSVQTCNIP-HIKSSITAPEVSLCMAEQISQEGMHNQSYQYIIETVIPTEHRSKVY 141

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYT 203
             +R    +  +  +   + Q           K  D    ++ FV  +   + EGM+FY 
Sbjct: 142 EFWRTDKVLRDRCEFVASFYQ-----------KYVDNPTPENYFVSLLADFLLEGMYFYN 190

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF    +L     M G A+ ++ I RDE  H+     +I       P+   + ++  +  
Sbjct: 191 GFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPMAMDVFPYSSEQIYEMFATA 250

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
           + HE       + +  +    +G+   S E Y +++AN R   IGL+PL+K   Y ++P+
Sbjct: 251 VEHEC-----RWTNHIVGNDILGITERSTEHYTKYLANIRLRSIGLDPLYKGENYQKSPY 305

Query: 321 PWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
             +    D KK+     NFFE  VT Y   + +  WD
Sbjct: 306 SHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342


>gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 347

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAINLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6]
 gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 376L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6]
          Length = 360

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 36/342 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N   P  Y   + K+     +HW+P+EVPM DD+  W  KN L D++R  +     FF  
Sbjct: 8   NYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDW--KNRLNDNQRDFLTNIFRFFTQ 65

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMY 149
            +  VA+            PE    +   A  E VH   + Y++ +LG+ E     F MY
Sbjct: 66  GDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEATYKEFLMY 125

Query: 150 REVPSITAKANWALQYTQT---LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            E+     K ++  +++ +   L        T+D +      + +F    EGM  ++ FA
Sbjct: 126 EEMKD---KQDYIKKFSDSRHILGKGEENLTTEDKEH-IAAGIALFSGFTEGMQLFSTFA 181

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------PHLWTKEFQ 258
            +L       M G+ +   + + DE+ H    I++      EN        P +  +   
Sbjct: 182 MLLIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVY 241

Query: 259 QKSRTM--LHEATLLEIAYAHETMP------------KGFVGLNAPSCEQYMQFIANRRC 304
           + ++ M  L EA +  +   ++  P            K F GL     + Y+++IA+RR 
Sbjct: 242 KIAKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRL 301

Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           + +G + +F    Y  NP P +  +I+     NFFE R T+Y
Sbjct: 302 NLMGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDY 343


>gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 347

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   E           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 388

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +++   L+ +++ +   NL +    +S+      +A   + S PE 
Sbjct: 59  WRPEEVSLQKDRSDYQT---LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
              +    F E +HS ++ YII ++  D GE+F+   +  ++  +A           N A
Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHA 175

Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
            +Y       L+    TTG  D   E  + L+       + EG+ FY  FA   + G   
Sbjct: 176 HEYDNGQMWNLARDGHTTGMYDR-HELKRKLYRAVANVNILEGIRFYVSFACSFAFGENK 234

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLE 272
            M G A+    I RDES HL    +++ + K  ++P +    KE +   + M       E
Sbjct: 235 LMEGSAKILSLIARDESQHLVITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEE 294

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329
             +A     +G  +GLN      Y+++IANRR   IGL+P+F      NP PW    ++ 
Sbjct: 295 KVWADYLFKQGSMIGLNDRLLHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNS 354

Query: 330 KKEKNFF-ETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 355 KGQQNAPQETEIESYVVGG 373


>gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 240

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 19/216 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y +A  + W   E+ +  D A W+    LTD ER  I R L FFA+S+
Sbjct: 23  IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
            +V  N+       +  PE R +   Q   E VHS  +  +I +   D  E    F+   
Sbjct: 80  GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 139

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   I  KA+WAL++    +SP            F   L  F  V EG+ F   FA I  
Sbjct: 140 QFECIKKKADWALRWIDDRNSP------------FPVRLIAFAAV-EGIMFSGSFAAIFW 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           L +   M G+    + I RDE LH +F   +   IK
Sbjct: 187 LKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK 222


>gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 241

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 23/207 (11%)

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  LF     +P +  KA+WAL++              D+   F + L  F  + EG++
Sbjct: 39  EKSHLFRAIETIPCVKKKADWALKWI-------------DSSDSFAERLLAFACI-EGIF 84

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   ++ Q+    P       ++ 
Sbjct: 85  FSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFAC-LLYQMLNNKPD------EEV 137

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++ EA  +E  +  +++P   VG+NA     Y++++A+     +G+ P    T NPF
Sbjct: 138 VRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFTSLGM-PKEYNTANPF 196

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347
            WM E+I L+ + NFFE RV EYQ+  
Sbjct: 197 DWM-ELISLQGKTNFFEKRVGEYQKAG 222


>gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus
           floridanus]
          Length = 343

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 46/315 (14%)

Query: 5   TGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +GLS  +A +K       N + + +L    +   + P++Y   W+ Y  A  + W   EV
Sbjct: 40  SGLSKTKAVQKVQLKEEFNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEV 99

Query: 60  PMQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           P+   D   W+ K  L  DER  I   L FFA+S+ +V  N++    + +   E R +  
Sbjct: 100 PLHKLDKKDWEEK--LNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYG 157

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175
            Q   E +HS  +  +I +   D  E   LFN    +PS+  KANWAL +          
Sbjct: 158 FQIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH------- 210

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                                E   F      I  L +   M G+    + I RDE LH 
Sbjct: 211 ---------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHC 249

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           +F   +   I ++ P        ++ ++++ +A  +E  +  + +P   +G+N      Y
Sbjct: 250 DFACLMFKHI-VQKPSF------ERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSY 302

Query: 296 MQFIANRRCHQIGLE 310
           ++F+A+R    +G E
Sbjct: 303 IEFVADRLFVALGFE 317


>gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
 gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
          Length = 286

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 28/299 (9%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M DD+  W  K  +   E+ ++ +   FF  ++  V +  +         PE    L   
Sbjct: 1   MADDVQDWHHK--ICSTEKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           A  E +H   + +++ ++G+ E E   F  YR++           +Y +           
Sbjct: 59  ANMETIHIAAYAHLLDTVGMPETEYLAFTKYRQMKE-------KCEYLKAFKM------- 104

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D+  E  + L V+    EG+  +  FA +L+  R NKM G+ +   Y +RDE+LH N  
Sbjct: 105 -DSPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSI 163

Query: 239 IDVINQIKIENPHLWTK---EFQQKSRTMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQ 294
             +     +EN     K   E ++    M+H E   +++A+    +     GL A   ++
Sbjct: 164 TKLFRTFLLENDIDKLKLEAEIREICDAMVHHEDAFIDLAFEMGDVE----GLKASEVKE 219

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           Y+++IAN R  Q+G   +++   NP  W+  V++  +  NFFE + TEY + A +  WD
Sbjct: 220 YIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278


>gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 347

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 37  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 93  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQ 264

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 324 KTDFFEMRNASYKK 337


>gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus
           1]
          Length = 378

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 138/319 (43%), Gaps = 34/319 (10%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P  Y WA E      N HW   E+ + DD++ WK+   LT  E+  I + L  F   +  
Sbjct: 74  PFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQLDVS 132

Query: 96  VAN---NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYR 150
           V +   NI + I++   N E R  L   A  E  H   +  +  +LGL E E   F  Y+
Sbjct: 133 VGHIYHNIFIPIFK---NNELRNMLCSFACREGTHQQAYALLNDTLGLPETEYSTFLNYK 189

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+ + T   N     T  LS  + +               +  V  EG+  +  FA +L+
Sbjct: 190 EMTNKTIYMN--DMKTDNLSEIALS--------------LIKAVYNEGVVLFASFAMLLN 233

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R   M G+ +  ++ +RDE++H+     +      E   + T+EF    R +  E   
Sbjct: 234 FQRFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQ 293

Query: 271 LE-----IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG-LEPLFKYTENPFPWMS 324
           LE     + + + T  KG   L   +   Y+++I  RR  Q+G LE       NP  W+S
Sbjct: 294 LETDFIILLFTNITEIKGLTKLCMIN---YVKYILQRRTEQLGLLESTEVLLTNPIDWIS 350

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +I  +   NFFE RVTEY
Sbjct: 351 WLIAGRNITNFFENRVTEY 369


>gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 282

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 38  KYGWAWEKYLSACNNHW-----MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           KY WA    L    + W      P EV   DD+  +     LT  ++ M         S 
Sbjct: 35  KYTWA----LKLLGSLWKQIPGFPKEVDTTDDVRDYAC--NLTTAKKRMYDLVWSQLISM 88

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +S   NN+   I  +++ PE    L RQA+EEA HS ++  ++ ++  +   ++ M +  
Sbjct: 89  DSFQTNNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKYD 148

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++     + L+         +   E L    V   + EG++FY+GF  I +L 
Sbjct: 149 DVLRKKNDYISSVYEELAG--------EVTDEKLLLAMVANQILEGVYFYSGFTAIYALA 200

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           RA KM+G A+  ++I RDE  HL    ++IN ++ E P L+T E + K   M  +A  LE
Sbjct: 201 RAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTSEVEAKIYEMFKKAGDLE 260

Query: 273 IAYAHETMPKGFVGLNAPSCEQ 294
           I +         +G      E+
Sbjct: 261 IEWGKYITGNQIMGFTDDIIEE 282


>gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 28/240 (11%)

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163
           H+S  E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA WAL
Sbjct: 9   HVS--EARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQWAL 66

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           ++              D  + F + L  F  V EG++F   F  I  L +   M G+   
Sbjct: 67  RWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFS 112

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +P  
Sbjct: 113 NELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDALPCA 165

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
            VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV EY
Sbjct: 166 LVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRVGEY 223


>gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 349

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N W+P EV M+ D    +  N L+  E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154
               +  +  ++++P           +E +H+ ++ Y++ S+ GL D+  +F + R  P+
Sbjct: 95  QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  K N  +         ++    ++   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+M G  +   +I RDE  H  F  ++I  I  EN  L   +           A  LE  
Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQ 266

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331
           +  E +  G  G++     +Y+++ AN+    +G+E L++   +N  PW+    D   + 
Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325

Query: 332 EKNFFETRVTEYQQ 345
           + +FFE R   Y++
Sbjct: 326 KTDFFEMRNASYKK 339


>gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 394

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 138/319 (43%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +K+   LT +++ +   NL +    +S+      +A   + S PE 
Sbjct: 65  WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 121

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
              +      E +HS ++ YII ++  D  E+F+   + P I ++A    +    L    
Sbjct: 122 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSE 181

Query: 170 -----------SSPSFTTGTKDADQEFLQDLF--VFYV-VFEGMWFYTGFAQILSLGRAN 215
                      ++     GT D  +E  + L+  V  V + EG+ FY  FA   + G   
Sbjct: 182 HEFDSGNAWKFAAEGHPAGTYDR-KELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELK 240

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLE 272
            M G A+    I RDES HL     +I + +  +     +   E +     M   A   E
Sbjct: 241 VMEGSAKIISLIARDESQHLVLTQQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEE 300

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDL 329
            A+A      G  +GLN     QY++F ANRR   IGL+P++  +   NP PW    ++ 
Sbjct: 301 KAWAQYLFKNGSMIGLNEKLLGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNS 360

Query: 330 KKEKNFF-ETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 361 KGQQNAPQETEIESYVIGG 379


>gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++ Y  NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus]
 gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus]
          Length = 387

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 75  PFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270
           KM G+ +  ++ +RDE++H+     +   +  E P + T++      +   R    E   
Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELEEAF 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328
           +++A+  E  P    GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis]
 gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis]
          Length = 224

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 20/224 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P+K+   WE Y     + W   E+ +  D+  W +K  L +DE+  IK
Sbjct: 7   ILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNTK--LNEDEKYFIK 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   DE 
Sbjct: 65  HILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF+     P+I  KA WAL++ ++ S              F + L  F  V EG++
Sbjct: 125 EKDKLFHAIEVFPAIKRKAEWALKWIESDS--------------FAERLIAFAAV-EGIF 169

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F   F  I  L +   M G+    + I RDE +H +F + + N 
Sbjct: 170 FSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHIHNH 213


>gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 134/318 (42%), Gaps = 30/318 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+++   W  Y    +  W   EV M  D+  W++   +   +R   K+ L FF  ++
Sbjct: 14  IFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVVAD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++    R +   E   +   QA +E VHS  +   + +L  DE E   +F+   
Sbjct: 71  EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + P I   A W  Q+              D  +  L +  V +   EG+ F   F  I  
Sbjct: 131 KHPIIKKMAQWVRQWM-------------DPARNSLGERLVGFAAVEGILFQNHFVAIQF 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L   N M G+    ++I RDE +H +F   +I+      P       ++    +L EA  
Sbjct: 178 LKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEAVE 231

Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           L    I YA +       G +     QY+++  +  C  +  + ++    NPFP M++  
Sbjct: 232 LVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYN-VGNPFPQMTKFF 290

Query: 328 DLKKEK-NFFETRVTEYQ 344
             + EK NFFE R T+YQ
Sbjct: 291 LNEVEKTNFFELRPTQYQ 308


>gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
          Length = 378

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 51  WRPEEVDVTQDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 107

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D G +F+       I  +A+   QY   L   +
Sbjct: 108 ETWIETWSFYETIHSRSYTHIIRNIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTT 167

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT D +        +   + L++  +   V E + FY  FA   +      M
Sbjct: 168 QLYQQFGEGTHDINGNKVTLTLRGLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLM 227

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     +IN +    ++P +     E   +S  +   A   E 
Sbjct: 228 EGNAKIIRFIARDEQLHLVGTQHMINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEK 287

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN    E Y++FI N R   IGL PLF    NP PWMS
Sbjct: 288 AWASYLFKDGSMLGLNKQIIEDYVEFITNERMAGIGLPPLFDKRSNPLPWMS 339


>gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 226

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 28/226 (12%)

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  +I +L  D+ E   LFN    +PSI  KA WA ++    S  SF T    
Sbjct: 10  ENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC-- 65

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                     V +   EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 66  ----------VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 115

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +         H +          ++ EA  +E  +  E++P   +G+N     QY++F+A
Sbjct: 116 L---------HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVA 166

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +R    +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 167 DRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210


>gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 345

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 135/310 (43%), Gaps = 28/310 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+ Y   W  Y     + W    V ++ DL  W     +TD+ER  I   L F A+S 
Sbjct: 50  IFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDWMR---MTDEERHFISYILAFLAASN 106

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V+ N+V    + +   E R +   Q   E +HS  +  +I +   D  E   L N   
Sbjct: 107 GIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKDPKEKETLINATE 166

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P +   A+W L++              D+   F + L  F  V +G++       I  
Sbjct: 167 TMPCVKKMADWVLKWIT------------DSKATFGERLVTFAAV-KGIFLSGNVPSITW 213

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M+G+    + I RDE LH +F   +         HL  K        ++ +A  
Sbjct: 214 LTKRGLMLGLTFSNELIFRDEGLHTDFACLLFK-------HLDQKPPLTVITHIICKAVT 266

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +E  +    +    VG++     +Y++F+A+R  +++G   +++ + NPFP+M +++  +
Sbjct: 267 IEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAVYR-SSNPFPFM-DLLSQQ 324

Query: 331 KEKNFFETRV 340
            + N FE RV
Sbjct: 325 GKTNGFEKRV 334


>gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           sediminis HAW-EB3]
 gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 376

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D A W+    LT+ E+ +   NL +    +S+ A ++   +   +S PE 
Sbjct: 49  WRPEEIDISKDRADWQR---LTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------T 166
             ++   AF E +HS ++ +I+ +L  + GE+F+     P+I  +A    +Y       T
Sbjct: 106 ETWVETWAFSETIHSRSYTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKYFDDVILTT 165

Query: 167 QTLSSPS-----FTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217
           Q L S           T +     L++     V      E + FY  FA   +      +
Sbjct: 166 QLLQSQGEGSYEVNGETIEVSARKLKERLYLAVCSVNALEAIRFYVSFACSFAFAERELL 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHL--WTKEFQQKSRTMLHEATLLE 272
            G A+  + I RDE+LHL+ G   I ++     ++P +    +E ++  R +  +    E
Sbjct: 226 EGNAKIIKLIARDEALHLS-GTQHILKLWANGNDDPEMVEVCQELREAGRQVFLDVVEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLNA   +QY+++I+N R   IG E  F    NP PW++
Sbjct: 285 KEWADYLFKDGSMIGLNAEILKQYIEYISNNRMEAIGYEAPFAIKNNPLPWIN 337


>gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 386

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +++   L+D+++ +   NL +    +S+      +A   + S PE 
Sbjct: 57  WRPEEVSLQKDRSDYQT---LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162
              +    F E VHS ++ YII ++  D  E+F+   +   + ++A+            A
Sbjct: 114 EACMTVWEFMEMVHSRSYTYIIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQA 173

Query: 163 LQYTQT----LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
            QY  +    L+    T G  +  +E  + L+       + EG+ FY  FA   + G   
Sbjct: 174 HQYDGSTMWDLAREGHTAGQYER-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 232

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHLWT--KEFQQKSRTMLHEATLLE 272
            M G A+    I RDES HL    +++ + K  ++P +    KE Q     M       E
Sbjct: 233 LMEGSAKILSLIARDESQHLVITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEE 292

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329
             +A     +G  +GLN      Y+++IANRR   IGL+P+F      NP PW    ++ 
Sbjct: 293 KMWADYLFKQGSMIGLNDRLLHNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNS 352

Query: 330 KKEKNF-FETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 353 KGQQNAPQETEIESYVVGG 371


>gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog
           virus]
          Length = 387

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 75  PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYVEM 192

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270
           KM G+ +  ++ +RDE++H+     +   +  E P + TK+      +   R    E   
Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELEEAF 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328
           +++A+  E  P     L     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 300 VDLAF-QECGP--VCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus]
          Length = 387

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 25/319 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 75  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 134 VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R  
Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRRG 239

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270
           KM G+ +  ++ +RDE++H+     +   +  E P +  ++      +   R    E   
Sbjct: 240 KMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELEEAF 299

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328
           +++A+  E  P    GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
 gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
          Length = 255

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 26/207 (12%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG+  ++A E  +  +  R +        L PLKY   W+ Y  A  + W   E+ +  D
Sbjct: 70  TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E
Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ +            D 
Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DK 227

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           D  F Q L  F  V EG++F   FA I
Sbjct: 228 DSTFAQRLVAFAAV-EGIFFSGSFASI 253


>gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 247

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 29/233 (12%)

Query: 109 SNPECRQYLLRQA-FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
           ++ E + Y  R+A +  A HS+TF         ++  +F     +PS+  KA WAL +  
Sbjct: 19  TSTETKHY--REALYATAEHSNTF----IEDAQEKERIFEAIETIPSVQHKAEWALAWIN 72

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D     +  V Y   EG+ F   F  +  L +   M G+    + I
Sbjct: 73  --------------DDNCFAERLVAYACVEGILFSGSFCALFWLKKRGLMPGLTFSNELI 118

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE LH +FG  + N +K      +T+  +++   ++  A  +E  +  + +P G +G+
Sbjct: 119 SRDEGLHTDFGCLLYNMLK------FTRLPEERVEDIVRSAVNVEREFITDALPVGLIGM 172

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           NA    +Y++F+A+R    +G   ++  + NPF WM+ +I L+ + NFFE RV
Sbjct: 173 NAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT-MISLQGKTNFFEKRV 223


>gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa
           Indica Group]
          Length = 233

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 26/256 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D   W +   L+ DER  +   L FFA+S+
Sbjct: 1   MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVSHVLAFFAASD 58

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ E   LF    
Sbjct: 59  GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA+WA+++              D  + F + L  F  V EG++F   F  I  
Sbjct: 119 TVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIFFSGSFCAIFW 164

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++        K  + + + ++ +A  
Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESRVQEIVADAVD 217

Query: 271 LEIAYAHETMPKGFVG 286
           +E  +  + +P   VG
Sbjct: 218 IEREFVCDALPVALVG 233


>gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  + F + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++ Y  NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-208]
          Length = 284

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 15/278 (5%)

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++ E+      +G  A+ +S      +  I  ++++P         A +E +H+ ++ 
Sbjct: 7   ALSEQEKYAFDAIIGLLATLDS-PQTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYS 65

Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           Y++ S+    ++  +F + R  P+I  +    +         ++     +   E L    
Sbjct: 66  YVLASITNLQEQNRVFELARTHPTIIKRNEPIMD--------AYDDFMNNKTGETLVKAL 117

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +   + EG+ FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP
Sbjct: 118 IQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENP 177

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L T E  + +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+ 
Sbjct: 178 ELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIP 236

Query: 311 PLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
            L+  +++N   W+    D   + + +FFE R + Y++
Sbjct: 237 ELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274


>gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
 gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
          Length = 369

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 19/285 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D    K    L ++E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDLQRDR---KDFIALPENEKHIFLSNLKYQTLLDSVQGRSPNVAFLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   AF E VHS ++ +II ++  +  ++F      P I  +A + +  Y Q ++  
Sbjct: 106 ETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIERAESISGYYDQLIAGV 165

Query: 173 SFTTGTKDADQE--------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                + + D+E         L    V   V E + FY  FA   +     +M G A+  
Sbjct: 166 QKYHLSSETDRESQLHELKRLLLLTMVSVNVLEAIRFYVSFACSFAFAEGARMEGNAKLI 225

Query: 225 QYIMRDESLHLNFGIDVINQIKI---ENPHLW--TKEFQQKSRTMLHEATLLEIAYAHET 279
           + I RDE+LHL+ G + I +  +   ++P +     E Q   R +  +A   E A+A+  
Sbjct: 226 KLIARDEALHLS-GTEFILRQWLHGGDDPQMQIVADEEQATIRQIFEDAAEQEKAWANYL 284

Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
              G  +GLNA    QY++++ ++R   + L P++   +NP PWM
Sbjct: 285 FNDGSMIGLNAEILHQYIEYLTDQRLDALSLSPIYGRRDNPLPWM 329


>gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 387

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D   ++    LT +++ +   NL +    +S+      +A   + S PE 
Sbjct: 58  WRPEEVSLQKDRGDYQQ---LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPEL 114

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAK----ANWA 162
              +    F E +HS ++ YII ++  D  E+F       N+ +   S+T       N A
Sbjct: 115 EGCINVWQFMEMIHSRSYTYIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDA 174

Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
            +Y        +      GT D  +E  + L+       + EG+ FY  FA   + G   
Sbjct: 175 HEYDSGNAWKFAREGHPAGTLDR-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 233

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKS--RTMLHEATLLE 272
            M G A+    I RDES HL     ++ +    ++P +     ++KS  + M       E
Sbjct: 234 LMEGSAKILSLISRDESQHLVITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEE 293

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDL 329
            A+A     +G  +GLNA     Y+++IANRR   IGL+P++      NP PW    ++ 
Sbjct: 294 KAWADYLFKEGSMIGLNARLLNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNS 353

Query: 330 KKEKNFF-ETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 354 KGQQNAPQETEIESYVIGG 372


>gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain
           [Arabidopsis thaliana]
          Length = 243

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 23/193 (11%)

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T KA WA+++              +  Q F + +  F  V EG++F   F  I  L + 
Sbjct: 51  VTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIFFSGSFCSIFWLKKR 96

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             M G+    + I RDE LH +F   + + ++       TK  + + + ++ +A  +E  
Sbjct: 97  GLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKFDEDRLKAIVCDAVEIERE 149

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +  + +    VG+N     QY++F+A+R    +G   ++  T NPF WM E+I L+ + N
Sbjct: 150 FVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTN 207

Query: 335 FFETRVTEYQQGA 347
           FFE RV EYQ+ +
Sbjct: 208 FFEKRVGEYQKAS 220


>gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 581

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 46/304 (15%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P+ +   WE Y  A    W   EV +  D++ W+    LT DER  I   L FFA+S+ +
Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152
           V  N+       +   E R +   Q   E +HS  +  ++ +   D+ E   LFN     
Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             I AKA+W L++    ++P            F + L     V EG++F + FA I  L 
Sbjct: 438 KFIKAKADWCLRWISDHNAP------------FSERLAAVAAV-EGIFFSSSFAAIFWLK 484

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +   + G+    + I R                         K  + +   +++E+ L+E
Sbjct: 485 KRGLLPGLTHSNELISR-------------------------KPAESRITEIINESVLVE 519

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +  E++P   +G+N     +Y++F+A+    ++G    +  T+N F +M E I ++ +
Sbjct: 520 QDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKNLFDFM-ENISIEGK 577

Query: 333 KNFF 336
            NFF
Sbjct: 578 TNFF 581


>gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 388

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 37/323 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +++   LT +++ +   NL +    +S+      +A   + S PE 
Sbjct: 59  WRPEEVSLQKDRSDYQT---LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
              +    F E +HS ++ YII ++  D  E+F+   +  ++ ++A           N A
Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSA 175

Query: 163 LQY----TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
            ++    T  L+     TGT +  +E  + L+       + EG+ FY  FA   + G   
Sbjct: 176 HEFDNCQTWDLARQGHLTGTYER-KELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 234

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQK-------SRTMLHE 267
            M G A+    I RDES HL    +++ N  K ++  +     ++K        RT+  E
Sbjct: 235 LMEGSAKILSLIARDESQHLVITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEE 294

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSE 325
            T     +   +M    +GLN      Y+++IANRR   IGL+P+F      NP PW   
Sbjct: 295 KTWANYLFREGSM----IGLNDRLLHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQH 350

Query: 326 VIDLKKEKNF-FETRVTEYQQGA 347
            ++ K ++N   ET +  Y  G 
Sbjct: 351 WLNSKGQQNAPQETEIESYVVGG 373


>gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 395

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +K+   LT +++ +   NL +    +S+      +A   + S PE 
Sbjct: 66  WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
              +      E +HS ++ YII ++  D  E+F+   +   I ++A         L    
Sbjct: 123 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAE 182

Query: 170 -----------SSPSFTTGTKDADQEFLQDLF--VFYV-VFEGMWFYTGFAQILSLGRAN 215
                      ++     GT D  +E  + L+  V  V + EG+ FY  FA   + G   
Sbjct: 183 HEFDSGNAWKFAAEGHPAGTYDR-KELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELK 241

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRT--MLHEATLLE 272
            M G A+    I RDES HL     +I + +  ++  +     ++KS    M   A   E
Sbjct: 242 VMEGSAKIISLIARDESQHLVLTQQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDL 329
            A+A      G  +GLN     QY++F ANRR   IGL+P++  +   NP PW    ++ 
Sbjct: 302 KAWASYLFKNGSMIGLNEKLLGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNS 361

Query: 330 KKEKNF-FETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 362 KGQQNAPQETEIESYVIGG 380


>gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae]
          Length = 345

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N+R  V  + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I 
Sbjct: 29  MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L    SS++LV   ++      L NPE + +   Q   E +HS  +  ++ +   D  
Sbjct: 84  NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEVYSMMVDAFFKDPK 143

Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF     +P +  KA +  ++                D     +  V +   EG++ 
Sbjct: 144 NIPLFKEIANLPEVKHKAAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              +A +  L     M G+A   + I RD   + +F   +         HL TK   +  
Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    NPF 
Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M +V    K   FFE +V++YQ+ +++
Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329


>gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
 gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
          Length = 283

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 26/290 (8%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +EA+H+ ++QY
Sbjct: 7   LTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQSYQY 65

Query: 134 IITSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I ++   E  GE+++ +R    +  +  + A  Y Q +         K   + +   L 
Sbjct: 66  LIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYID--------KQTTESYFIALV 117

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
             Y++ E ++FY GF    +L     M G A+ ++ I RDE  H+     +I +      
Sbjct: 118 ADYLL-ESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMATFS 176

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H   + ++     M   A   E  + +  +    +G+   S EQY +++AN R   IGLE
Sbjct: 177 HSVEQIYE-----MFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAIGLE 231

Query: 311 PLF---KYTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           PL+   KY ++P+  +    D KKE     NFFE  VT Y   + L  WD
Sbjct: 232 PLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281


>gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L  F  V EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++        K  +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLR-------KKLGEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L  F  V EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++        K  +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLR-------KKLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1]
 gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain
 gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1]
          Length = 579

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 36/303 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           ++ W  TE+  + D+  W+    ++++ER  +++ L FFA  ++LV + I +        
Sbjct: 91  SSSWQQTEIDAESDIPTWEQ---ISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPL 146

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR--EVPSITAKANWALQY 165
           PEC+ ++  Q   E VH   +   + +L  D+    +L N Y+  E   I  K +W    
Sbjct: 147 PECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKKVDW---L 203

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            + +S  + + G          ++ V  V  E + F   FA +L   RA  M  +    +
Sbjct: 204 GKIISVENDSRG----------EMVVGQVCTEAIMFAASFAILLKF-RAPYMRALVLGNE 252

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           +I RDE+LH  F  +++ ++  + P        ++   +L EAT +E+ +A   +P+G  
Sbjct: 253 FIRRDETLHFRFYAELL-RLMPDRPS------DERIAELLTEATEIELEFAEYVVPEGVK 305

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF-----KYTENPFPWMSEVIDLKKEKNFFETRV 340
            +      Q+++   N+ C  + + P++         +P  +M+  ++ +++ NFFE + 
Sbjct: 306 YITKDRLIQHVKANTNQVCEMLDINPIYFDQKGNVLLSPLLYMN-TLESEQKINFFEGKA 364

Query: 341 TEY 343
           TEY
Sbjct: 365 TEY 367


>gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL F2-515]
          Length = 267

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 15/265 (5%)

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
           +G  A+ +S      +  I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 3   IGLLATLDS-PQTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 61

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +         ++     +   E L    +   + EG+ FY+
Sbjct: 62  RVFELARTHPTIIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYS 113

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 114 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 173

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 174 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 232

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 233 IKAYADNFTETKTDFFEMRNSSYKK 257


>gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo
           sapiens]
          Length = 172

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 9   VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 61

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G  
Sbjct: 62  HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS 121

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 122 KVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 154


>gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
 gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
          Length = 336

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 18/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    E   +  N++W+ TE     D+  +K     T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E  V       IY  +   E     +  A  E  H   + +++  LG+ E   F  
Sbjct: 75  IAQIEVQV-KTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             +VP+I  + ++  +Y +   S        D  QE++  L +F    E +  ++ F  +
Sbjct: 132 VTDVPAIEERIDYLDEYLEKSES--------DDTQEYVMSLLLFSTFVEHVSLFSQFLIM 183

Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            S  +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +    +
Sbjct: 184 TSFDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQ 243

Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +  L     + +++   N+    +G+EP+F+  E+      W 
Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
            E I + K+ +FF  R T Y + A+
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328


>gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA 
Sbjct: 4   LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           WAL++              D  +   + L  F  V EG++F   F  I  L +   M G+
Sbjct: 64  WALRWM-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  + +
Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE RV
Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKRV 220

Query: 341 TEY 343
            EY
Sbjct: 221 GEY 223


>gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 378

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 24/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L  +E+ +   NL +    +S+ + +  +A    +S PE 
Sbjct: 49  WRPEEIDVSKDKIDFAK---LLPNEKHIFISNLQYQILLDSVQSRSPNIAFLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---S 170
             ++   +F E +HS ++ +II ++  + G +F+   ++  I  +A    ++   L   +
Sbjct: 106 ENWIETWSFSETIHSRSYTHIIRAIVNEPGIVFDDIMKIDEIIQRAESVSKHYNELIKCT 165

Query: 171 SPSFTTGT---KDADQEFLQDLFVF----YV------VFEGMWFYTGFAQILSLGRANKM 217
                 G    K  D+E L DL+      Y+      + E + FY  FA   +      M
Sbjct: 166 QAYLLHGIGKFKVQDKEILIDLYCLKKQLYLTIMSVNILEAVQFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +    ++P +    KE +++  TM  EA   E 
Sbjct: 226 EGNAKIIRMIARDEALHLTGTQHILNLMSDGKDDPDMKKIAKECEKEVITMFKEACEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
            +A      G  +GLNA   +QY+++I N R   + L P+F    NP PW++  +D
Sbjct: 286 DWAEYLFRDGSMIGLNAKMLKQYLEYITNVRMKALNLSPVFDECINPLPWINHWLD 341


>gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 386

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D A +     LT ++R +   NL +    +S+      +A   + S PE 
Sbjct: 57  WRPEEVSLQKDRADYAQ---LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
              +    F E +HS ++ YII ++  +  ++F+   +   I  ++           N A
Sbjct: 114 EACMNVWEFMEMIHSRSYTYIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHA 173

Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
            QY       L+     TG  D  +E  + L+       + EG+ FY  FA   + G   
Sbjct: 174 HQYDTGTMWELAKDGHYTGQYDR-RELKRKLYRAVANVNILEGIRFYVSFACSFAFGELK 232

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRT--MLHEATLLE 272
            M G A+    I RDES HL    +++ N    ++P +     +++     M  +    E
Sbjct: 233 LMEGSAKILSLIARDESQHLVITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEE 292

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329
            A+A      G  +GLN     QY+++IANRR   IGL+P++      NP PW    ++ 
Sbjct: 293 KAWAEYLFKDGSMIGLNDRLLSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNS 352

Query: 330 KKEKNF-FETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 353 KGQQNAPQETEIESYVIGG 371


>gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FF +S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L  F  V EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++        K  +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLR-------KKLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 205

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +PSI  KA WA ++    S  SF T              V +   EG++F   
Sbjct: 13  LFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGS 58

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +         H +          +
Sbjct: 59  FAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDI 109

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M 
Sbjct: 110 VREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM- 167

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
           E I L+ + NFFE R   YQ+G
Sbjct: 168 ENISLQGKTNFFERREANYQKG 189


>gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 211

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 28/216 (12%)

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +L  D+ E   LFN    +PSI  KA WA ++    S  SF T              
Sbjct: 5   LIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------ 50

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 51  VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--------- 101

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H +          ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G +
Sbjct: 102 HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEK 161

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 162 KIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195


>gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c]
 gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2;
           AltName: Full=Ribonucleotide reductase R2 subunit 2;
           AltName: Full=Ribonucleotide reductase small subunit 2
 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
 gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae]
 gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae]
 gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c]
 gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB]
 gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO]
          Length = 345

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N+R  V  + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I 
Sbjct: 29  MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +   D  
Sbjct: 84  NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143

Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF     +P +  KA +  ++                D     +  V +   EG++ 
Sbjct: 144 NIPLFKEIANLPEVKHKAAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              +A +  L     M G+A   + I RD   + +F   +         HL TK   +  
Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    NPF 
Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M +V    K   FFE +V++YQ+ +++
Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329


>gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 210

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 22/208 (10%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KANWAL +    S+                +  V +   EG++F   
Sbjct: 10  LFNAIETLPCVRKKANWALNWINHESAT-------------FPERVVAFAAVEGIFFSGS 56

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +   I ++ P        ++ +++
Sbjct: 57  FAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHI-VQKPSF------ERVKSI 109

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + +A  +E  +  + +P   +G+N      Y++F+A+R    +G E ++  +ENPF +M 
Sbjct: 110 VMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFSFM- 167

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + I +  + NFFE +V EY++   ++ D
Sbjct: 168 DFISMMGKTNFFEKKVGEYKKFGVMEED 195


>gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
 gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
          Length = 376

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D    K    L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDLSTDR---KDFAALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   +F E +HS ++ +II ++  D  ++F+       IT +A    +Y   L    
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVISDPSKVFDDIVSNEYITKRAESVTKYYDDLIEGV 165

Query: 173 SFTTGTKDADQEF--------LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
           ++     + D E         L+DL            V E + FY  FA   +     KM
Sbjct: 166 TYYQNLGEGDHEINGETIHVSLRDLKRKLYLTMASVNVLEAIRFYVSFACSFAFAERTKM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHLW--TKEFQQKSRTMLHEATLLE 272
            G A+  + I RDE+LHL  G   + QI     ++P +     E +++   +  EA   E
Sbjct: 226 EGNAKIIKLIARDEALHLT-GTQHMMQIWALGKDDPEMGEIANECKKQVIEIFREAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N+R   IGL+ +F+  +NP PW++
Sbjct: 285 KDWAEYLFKDGSMIGLNKDILCQYVEYITNQRLGAIGLDNIFETRQNPIPWIN 337


>gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 397

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 28/301 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D   +++   L  +++ +   NL +    +S+      +A   + S PE 
Sbjct: 68  WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPEL 124

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
              +    F E +HS ++ YII ++  D  E+F+       +     S+TA  +  ++  
Sbjct: 125 EACMEVWGFMEMIHSRSYTYIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSA 184

Query: 167 QTLS-----------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           Q              SPS     KD  ++  + +     + EG+ FY  FA   + G   
Sbjct: 185 QQWGTGNMWQEDFRQSPSSQWEIKDVKRKLYRAV-ANVNILEGIRFYVSFACSFAFGELK 243

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHL--WTKEFQQKSRTMLHEATLLE 272
            M G A+    I RDE+ HL    +++N+  + ++P +    KE ++ +      A   E
Sbjct: 244 LMEGSAKIISLIARDENQHLAITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEE 303

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329
             +A      G  +GLN    +QY++++ANRR   IGL+P +    + NP PW    I  
Sbjct: 304 KRWADYLFKDGSMIGLNDKLLQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISS 363

Query: 330 K 330
           K
Sbjct: 364 K 364


>gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 395

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 28/293 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D A ++    L  +++ +   NL +    +S+      +A   + S PE 
Sbjct: 66  WRPEEVSLQKDRADYQQ---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
              +      E VHS ++ +II ++  D   +F+       +     S+TA  +  LQ  
Sbjct: 123 ESAMNIWQTMEMVHSRSYTHIIKNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAA 182

Query: 167 QTLS-----------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
                          SP+     KD  ++  + +   Y++ EG+ FY  FA   + G   
Sbjct: 183 HMYDTGNMWKEDWKDSPTAKWELKDLKRKLYRAVANVYIL-EGIRFYVSFACSFAFGENK 241

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLE 272
            M G A+    I RDES H+    +++N+ K  ++P +    +E ++    M ++    E
Sbjct: 242 LMEGNAKIISLIARDESQHMTITQNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPW 322
           + +A      G  +GLNA   ++Y+++ ANRR   IGL+P F    + NP PW
Sbjct: 302 VIWADYLFRDGSMIGLNAKLLQKYVEWTANRRMKSIGLKPTFDAPLSNNPLPW 354


>gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
           ANKA]
 gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium
           berghei]
          Length = 158

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 9/151 (5%)

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P      
Sbjct: 1   EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------ 54

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F ++
Sbjct: 55  -EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 113 KNPFNWM-DLISLQGKTNFFEKRVADYQKSG 142


>gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2]
          Length = 384

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 28/302 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D   +++   L  +++ +   NL +    +S+      +A   + S PE 
Sbjct: 53  WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
              +   +F E +HS ++ Y+I ++  D  E+F+       I ++A    +      + +
Sbjct: 110 EACMEVWSFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEA 169

Query: 174 FTTGT----KDADQEFLQDLFVFYV---------------VFEGMWFYTGFAQILSLGRA 214
              G     +D D+     L V  +               + EG+ FY  FA   + G  
Sbjct: 170 QGWGQSNLWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGEL 229

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHL--WTKEFQQKSRTMLHEATLL 271
             M G A+    I RDE+ HL    +++N   K ++P +    KE +Q +  M  +    
Sbjct: 230 KVMEGSAKIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNE 289

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVID 328
           E  +A      G  +GLN     QY++++ANRR   IG++P++      NP PW    I 
Sbjct: 290 EKMWAEYLFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWIS 349

Query: 329 LK 330
            K
Sbjct: 350 SK 351


>gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 388

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 27/318 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +++   L++ ++ +   NL +    +S+      +A   + S PE 
Sbjct: 59  WRPEEVSLQKDRSDYQT---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAKANWALQYT 166
              +    F E +HS ++ YII ++  + G++F       N+     S+T   +  +++ 
Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHA 175

Query: 167 QTLSSPSFTTGTKDADQ-------EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216
                 +     ++  Q       E  + L+       + EG+ FY  FA   + G    
Sbjct: 176 HQYDGSTMWDLAREGHQGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKL 235

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPH--LWTKEFQQKSRTMLHEATLLEI 273
           M G A+    I RDES HL    +++ +  + ++P   L  +E Q     M       E 
Sbjct: 236 MEGSAKILSLIARDESQHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEK 295

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLK 330
           A+A+     G  +GLN      Y+++IANRR   +G++P++      NP PW    ++ K
Sbjct: 296 AWANYLFRDGSLIGLNDRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSK 355

Query: 331 KEKNF-FETRVTEYQQGA 347
            ++N   ET +  Y  G 
Sbjct: 356 GQQNAPQETEIESYVVGG 373


>gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small
           chain [Hydra magnipapillata]
          Length = 363

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 45/322 (13%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95
           K+   W+ Y    + +W   E+   +D       + L  D+ +   IKR L FFA ++S+
Sbjct: 57  KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149
           V  NI     + LS    ++  +   F+   E  HS  +  ++  +  D     EL N +
Sbjct: 112 VNINI----KKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           + V SI     WA ++  +     ++               V + +FEG+ F   FA I 
Sbjct: 168 KTVASIKRMIQWAQRWINSKRRIGYSI--------------VVFCIFEGLMFSGAFAGIY 213

Query: 210 SLGRA---NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            L +    + M G+ +    I +DE +H  FG  +   I      ++   F++    M  
Sbjct: 214 WLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCVIYTFI------IYRLSFEEICELM-K 266

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP--FPWMS 324
           EA  +  ++  + +    +G+N      Y++++A+R    +G E +F  T+ P  F +M 
Sbjct: 267 EAVEICKSFTKDAICVDMIGMNVELMYNYIEYVADRLMVYLGYEKIF-MTKIPDQFQFMD 325

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
            +  L K+ NFFE R TEYQ+ 
Sbjct: 326 TIGFLNKD-NFFERRATEYQKA 346


>gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789]
 gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291]
 gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118]
 gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796]
 gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 345

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 29/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N+R  V  + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I 
Sbjct: 29  MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +   D  
Sbjct: 84  NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143

Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF     +P +  K  +  ++                D     +  V +   EG++ 
Sbjct: 144 NIPLFKEIANLPEVKHKTAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              +A +  L     M G+A   + I RD   + +F   +         HL TK   +  
Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    NPF 
Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M +V    K   FFE +V++YQ+ +++
Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329


>gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13]
          Length = 328

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 29/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M N+R  V  + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I 
Sbjct: 12  MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +   D  
Sbjct: 67  NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 126

Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF     +P +  K  +  ++                D     +  V +   EG++ 
Sbjct: 127 NIPLFKEIANLPEVKHKTAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 173

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              +A +  L     M G+A   + I RD   + +F   +         HL TK   +  
Sbjct: 174 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 226

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    NPF 
Sbjct: 227 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 285

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M +V    K   FFE +V++YQ+ +++
Sbjct: 286 FMEDVATAGK-TTFFEKKVSDYQKASDM 312


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 40/350 (11%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           QA +++ N+ +KR+         L P +Y   ++   +  +++W+ TE     D+  +K+
Sbjct: 96  QAQKRKTNIFEKRI--------NLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKT 147

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
           +  +TD ER  IK  +   +  E  V       IY  +  PE        A  E  H+  
Sbjct: 148 R--ITDVERSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEVGAVGATFAESEVRHADA 204

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           + +++  LGL++   F + ++ P +  +    +QY +T    +      + ++E+ + + 
Sbjct: 205 YSHLLEILGLNKE--FKLLKKKPVMMKR----VQYLET----ALKNAKSEDNKEYSESIL 254

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           +F +  E +  ++ F  I++  +   M+ GI+   +   ++E +H +FGID+I  IK EN
Sbjct: 255 LFSLFIEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAEN 314

Query: 250 PHLWTKEFQQKSRTMLHEATLLE------IAYAHET--MPKGFVGLNAPSCEQYMQFIAN 301
           P  +  E     + M  EA   E      I  A E   +PK  V        ++++   N
Sbjct: 315 PEWFDAEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVN-------EFIKDRFN 367

Query: 302 RRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +    IG+EP+F+  E       W  + I   K  +FF  R   Y + A+
Sbjct: 368 KSLTSIGIEPVFEVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQ 417


>gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
 gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
          Length = 377

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D    K    L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDLSSDR---KDFLNLAEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+       IT +A+   +Y   L    
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKV 165

Query: 174 --FTT-----------GTKDADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANK 216
             + T           G  D   + L+  L+V      V E + FY  FA   +      
Sbjct: 166 NLYNTLGLGVHNVPGKGEVDVSMKALKKALYVTLASVNVLEAIRFYVSFACSFAFAERTL 225

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +    ++P +    +E +Q+   +  EA   E
Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHMLNLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQE 285

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLNA    QY+++I+N R   +GLEP F+   NP PW++
Sbjct: 286 KEWAKYLFKDGSMIGLNAEILGQYVEYISNVRMQAVGLEPAFETKSNPIPWIN 338


>gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 296

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 26/271 (9%)

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-- 159
           +A   + S PE    +L   F E +HS ++ YII ++  D  E+F+   E   I  +A  
Sbjct: 12  MAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILEDEKILDRASS 71

Query: 160 ---------NWALQYTQT----LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYT 203
                    N A QY  +    L+      G  D  +E  + L+       + EG+ FYT
Sbjct: 72  VTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDR-RELKRKLYRAVANVNILEGIRFYT 130

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHL--WTKEFQQK 260
            FA   + G    M G A+    I RDES HL    +++N+ +  ++P +    KE Q  
Sbjct: 131 SFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEMDIIAKEEQSW 190

Query: 261 SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TE 317
             +M   A   E  +A      G  +GLN      Y+++IANRR   I ++P+F      
Sbjct: 191 VMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICIKPMFDIPAKN 250

Query: 318 NPFPWMSEVIDLKKEKNFF-ETRVTEYQQGA 347
           NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 251 NPLPWTEHWLNSKGQQNAPQETEIESYVIGG 281


>gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
 gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
          Length = 377

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D    K    L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDLSSDR---KDFQHLEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--- 170
             ++   +F E +HS ++ +II ++  + G +F+   E   IT +A    ++   L    
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLV 165

Query: 171 ------SPSF--TTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216
                  P      G  D +   +   + L++  V   V E + FY  FA   +      
Sbjct: 166 GLYNTLGPGIHNVPGKGDVNVNLKALKKALYLTMVSVNVLEAIRFYVSFACSFAFAERTL 225

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +    ++P +    KE + ++  +  EA   E
Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQE 285

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLNA    QY+++I N R   IGL P F+   NP PW++
Sbjct: 286 KEWASYLFKDGSMIGLNAQILGQYVEYITNIRMQAIGLLPTFETKHNPIPWIN 338


>gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
 gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
          Length = 361

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 22/284 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D    +    L + E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 48  WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E++H+ ++ +II ++  +  E+ +     P I  +A    +Y   L S S
Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164

Query: 174 --FTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
             +  G +    E  + L++  +   V E + FY  FA   +      M G A+  + I 
Sbjct: 165 LEYQQGKQVDMYELRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIA 224

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYAHETM------- 280
           RDE+LHLN    ++  +  E+     +++Q  ++T   E   + E AY  E         
Sbjct: 225 RDEALHLNGTQHILTLLVKEH-----EDYQTITQTCKDEIYDIFESAYEQERAWIDYLFK 279

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
               +GLN     QY+Q+I + R   IGLEP+F  T+NP PW++
Sbjct: 280 DGSMIGLNKEILTQYLQYITDIRMSAIGLEPVFN-TKNPIPWIN 322


>gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC1]
          Length = 361

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 22/284 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D    +    L + E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 48  WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E++H+ ++ +II ++  +  E+ +     P I  +A    +Y   L S S
Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164

Query: 174 --FTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
             +  G +    E  + L++  +   V E + FY  FA   +      M G A+  + I 
Sbjct: 165 LEYQQGKQVDMYELRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIA 224

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYAHETM------- 280
           RDE+LHLN    ++  +  E+     +++Q  ++T   E   + E AY  E         
Sbjct: 225 RDEALHLNGTQHILTLLVKEH-----EDYQTITQTCKDEIYDIFESAYEQERAWIDYLFK 279

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
               +GLN     QY+Q+I + R   IGLEP+F  T+NP PW++
Sbjct: 280 DGSMIGLNKEILTQYLQYITDIRMSAIGLEPVFN-TKNPIPWIN 322


>gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 336

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    +   +  N++W+ TE     D+  +++    T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E  V       IY  +   E     +  A  E  H   + +++  LG+ E   F  
Sbjct: 75  IAQIEVQV-KTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             +VP+I  +  +  +Y +   S        D  QE++  + +F    E +  ++ F  +
Sbjct: 132 VTDVPAIEDRIEYLDKYLEKSES--------DDKQEYVMSILLFSTFVEHVSLFSQFLIM 183

Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +S  +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +     
Sbjct: 184 MSFDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQR 243

Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +  L     + +++   N+    +G+EP+F+  +       W 
Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
            E I + K+ +FF  R T Y + A+
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328


>gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila
           melanogaster]
          Length = 214

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 25/221 (11%)

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E R +   Q   E VHS  +  +I +   D  +   LFN    +P++  KA+WAL +   
Sbjct: 13  EARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSW--- 69

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +SS S   G +           + +   EG++F   FA I  L +   M G+    + I 
Sbjct: 70  ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 119

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F + +         HL  +  +++   ++ +A  +E  +  + +P   +G+N
Sbjct: 120 RDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMN 172

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
                QY++F+A+R   ++G+  ++  T+NPF +M E+I L
Sbjct: 173 CDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISL 211


>gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 377

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  +   +F+   E   I  +A    +Y   L + +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALIAAT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G   AD        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGNHSADGVPFTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRTGQDDPEMAEIAVECEQECFDIFKSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL P ++  T+NP PW++
Sbjct: 286 DWADYLFKDGSMIGLNKQILCQYVEYITNLRMSAVGLRPAYEGATQNPIPWIN 338


>gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
 gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit;
           Contains: RecName: Full=Aae nrdB intein; AltName:
           Full=Aae RIR2 intein
 gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
          Length = 696

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 17/220 (7%)

Query: 29  SDVNQLLPLKYGWAWEKY-LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           +++ +L  +KY WA++ Y L    N W+P E+ M +D   +++   L+D E+   +  L 
Sbjct: 34  TNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQYET--VLSDYEKRAYELVLS 91

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145
           F  + +S   + ++    R ++ PE    +  Q F+E+VH++++Q+I+ S+   +   E+
Sbjct: 92  FLIALDSFQVD-MLKEFGRMITAPEVEMAITAQEFQESVHAYSYQFILESVVDPVKADEI 150

Query: 146 FNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +N +RE   +  +     + Y + +  P+        ++ F++     Y++ E ++FY+G
Sbjct: 151 YNYWREDERLLERNKVIAELYNEFIRKPN--------EENFIKATIGNYIL-ESLYFYSG 201

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           FA   +LGR  KM    +Q +YI RDE   +  G +V+ +
Sbjct: 202 FAFFYTLGRQGKMRNTVQQIKYINRDELCFIE-GTEVLTK 240



 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           ++Y G    +S+ + N +V   +    +    + H+    ++IN ++ ENP L+T E ++
Sbjct: 546 FYYKGKVYCVSVPKGNIVVRYKDS---VCIAGNCHVTLFRNIINTLRKENPELFTPEIEK 602

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTEN 318
                   A   EI +         +G+N    E+Y++++ N R  QIG +P++ + TEN
Sbjct: 603 WIVEYFKYAVNEEIKWGQYVTQNQILGINDVLIERYIKYLGNLRITQIGFDPIYPEVTEN 662

Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351
           P  W+ E   +   K +FF+ +   Y +  ELKW
Sbjct: 663 PLKWIDEFRKINNTKTDFFQAKPQTYSKANELKW 696


>gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
 gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
          Length = 376

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 39/343 (11%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61
           NN  L P+  G+  VNV       AR DV      KY   +EK +    +  W P EV +
Sbjct: 11  NNACLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L D E+ +   NL +    +S+   +  +A    +S PE   ++   +
Sbjct: 57  SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------S 170
           F E +HS ++ +II ++  D   +F+   +   I  +A    QY   L            
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGE 173

Query: 171 SPSFTTG-----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                 G     T+   ++ L    V   V E + FY  FA   +    N M G A+  +
Sbjct: 174 GTHIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    ++  ++  +++P +    +E +Q +  +  +A   E  +A     
Sbjct: 234 LIARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            G  +GLN     QY+++I N R   + L P +    NP PWM
Sbjct: 294 DGSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWM 336


>gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%)

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P    KA+WAL +           G + A      +  V +   EG++F   FA I  L 
Sbjct: 10  PHRWKKADWALNWI----------GNQKAS---YGERVVAFAAVEGIFFSGSFAAIFWLK 56

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +   M G+    + I RDE LH +F   +         HL  K   Q    ++  A  +E
Sbjct: 57  KRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIE 109

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +  E +P   +G+N    ++Y++F+A+R   ++G   +++  ENPF +M E I L+ +
Sbjct: 110 QEFLTEALPVKLIGMNCQLMKRYIEFVADRLLLELGFAKIYR-AENPFDFM-ENISLEGK 167

Query: 333 KNFFETRVTEYQQ 345
            NFFE RV EYQ+
Sbjct: 168 TNFFEKRVGEYQR 180


>gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 251

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA WA ++    S  SF T              V +   EG++F   FA I  
Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG 238
           L +   M G+    + I RDE LH +F 
Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFA 228


>gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB]
          Length = 229

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER  I 
Sbjct: 78  LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   D  
Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195

Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167
           E   LFN    +P I  KA WAL++ Q
Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222


>gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
 gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
          Length = 252

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y  A  + W   EV +  DL  W   N L D+ER  + R L FFA+S+
Sbjct: 102 MFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERYFVSRVLAFFAASD 159

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++      + +PE + +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 160 GIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVKDPQEADFLFNAIE 219

Query: 151 EVPSITAKANWALQYTQ 167
            +P IT KA WA+++ Q
Sbjct: 220 NIPCITKKAEWAIKWIQ 236


>gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 378

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 26/297 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   + L  +E+ +   NL +    +S+      +A    +S PE 
Sbjct: 49  WRPEEIDVSKDKIDF---SKLLPNEKHIFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-------LQYT 166
             ++   +F E +HS ++ +II ++  + G +F+   +   I  +A  A       ++YT
Sbjct: 106 ENWIETWSFSETIHSRSYTHIIRAIINEPGVIFDDIMKTDEIIQRAESASKHYDGLIKYT 165

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVF----YV------VFEGMWFYTGFAQILSLGRANK 216
           Q       T   K  ++E   DL+      Y+      + E + FY  FA   +      
Sbjct: 166 QAYLLHG-TGKLKIQEEEVSIDLYCLKKQLYLTIMSVNILEAVRFYVSFACSFAFAERKV 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +      L     +KE Q +  TM  EA   E
Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMSSGKDDLDMQKISKECQDEVITMFREACEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             +A      G  +GLNA   +QY+++I N R   + L  +F    NP PW++  +D
Sbjct: 285 KDWAEYLFRDGSMIGLNAQILKQYLEYITNVRMKALNLSLIFDECTNPLPWINHWLD 341


>gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
 gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
          Length = 387

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 29/319 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +     LT++++ +   NL +    +S+      +A   + S PE 
Sbjct: 58  WRPEEVSLQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 114

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE-------VPSITAKANWALQYT 166
              +    F E +HS ++ +II ++  +  ++F+   E         S+T   +  +Q+ 
Sbjct: 115 EACMTVWEFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHA 174

Query: 167 QT--------LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
           Q         L+      G  D  +E  + L+       + EG+ FY  FA   + G   
Sbjct: 175 QEYGNGTMWELAKEGHVAGQYDR-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 233

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLE 272
            M G A+    I RDE+ HL    +++N+ +  ++P +    KE +     M       E
Sbjct: 234 LMEGSAKILSLIARDENQHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEE 293

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329
             +A      G  +GLN      Y+++IANRR   IGL+P++      NP PW    ++ 
Sbjct: 294 KRWADYLFKDGSMIGLNDRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNS 353

Query: 330 KKEKNF-FETRVTEYQQGA 347
           K ++N   ET +  Y  G 
Sbjct: 354 KGQQNAPQETEIESYVVGG 372


>gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
 gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 337

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 26/317 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY W    Y     N W P+EV    +    K+   LTD+E+ + K      + ++S  A
Sbjct: 34  KYRWDSNIYDLMNANTWFPSEVNTSTE---KKNFEALTDNEQSIYKMTFAQLSFNDS--A 88

Query: 98  NNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
               L+ +R L+N    + ++  Q  +E  HS ++  ++ + G  E E+FN+Y+   ++ 
Sbjct: 89  QEEYLSDFRRLANNRLVKSVISLQIMQEVNHSKSYAVLLDACGNSE-EVFNLYKYDAALN 147

Query: 157 AK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            K    A Q+ + +   S       AD+  L  +    V  EG++F  GF+ I  LG  +
Sbjct: 148 KKNLQVAEQFAKYIDGGS-------ADKMLLSAMAS--VNLEGIYFLLGFSYIYLLG--D 196

Query: 216 KMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           K+ G  +  ++I RDE + HL    ++   I+ EN ++ T       + M+ +A  +E+ 
Sbjct: 197 KVPGARDMIKFIARDELNTHLPLFANIFKTIQKEN-NIATSTIDAAYK-MIQDAVKIELE 254

Query: 275 YAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF--PWMSEVIDLKK 331
           Y H  + +   +G+     EQ +   AN R  +IGL+P+F  +   +    +++ +++ +
Sbjct: 255 YGHYLLDQFPIMGVTHELMEQTVYNYANDRLKKIGLDPIFDESATTYLQKLVTKHLEMNE 314

Query: 332 EK-NFFETRVTEYQQGA 347
            K NFFE+ V+ Y + +
Sbjct: 315 VKSNFFESNVSNYAKSS 331


>gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 347

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 15/304 (4%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P EV M  D   W ++  + + E+ +    +G  A  +S+      +A Y ++ +   
Sbjct: 52  WIPDEVSMSKDKVQWATE--MNEMEQELFLNAIGILAVLDSIATYFDNVAAY-YIRDSAI 108

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  +   A  E +H+ ++ YI++S+      L    R       K N  +     L    
Sbjct: 109 KALMAFVAAMETIHNESYTYILSSVSSKAVSLDVFER------PKKNEFMIRRNKLMMDL 162

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           F    ++   E      V     EG+ F  GF       R  KM G     QYI RDE  
Sbjct: 163 FDEFIQNPTPETFAKGLVAMSGLEGLCFVNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMK 222

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H  F   ++  I  + P L T+EF +       E   LE  +  E + K    ++    +
Sbjct: 223 HSYFQTILVRDILTQYPELNTEEFSEFVYDFFTELVQLEREFC-EDLYKNTPDIDIEEVK 281

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVIDLKKEK-NFFETRVTEYQQGAELK 350
           +Y+ + AN     +GL+ +F   +NP PW++  +  +L   K +FFE +   Y +  E K
Sbjct: 282 EYIGYRANLILDNLGLDQIFSAKKNPMPWITAFDPDNLNNTKRDFFEDKEVNYGKANEQK 341

Query: 351 --WD 352
             WD
Sbjct: 342 NDWD 345


>gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter sp. 638]
          Length = 376

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T +++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +   A L E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GLE  FK   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYIEYITNIRMQAVGLELPFKTRSNPIPWIN 337


>gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
 gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
          Length = 376

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D    K    + + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDLSTDR---KDFMNMPEHEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             +    AF E +HS ++ +II ++  +  E+F+     P I  +A+   +         
Sbjct: 106 ETWFETWAFSETIHSRSYTHIIRNIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLS 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                      T+    + T  ++  ++    L V   V E + FY  FA   +      
Sbjct: 166 SVHSIHGEGLHTVDGKVYDTSMRNLKKKLYLTL-VSINVLEAIRFYVSFACSFAFAERAI 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +    ++P      KE +Q    +  EA   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A     +G  +GLNA     Y+++I N R   + LE +F   +NP PWM+
Sbjct: 285 KDWAQYLFREGSMIGLNAQILSDYVEYITNVRMKALNLEEIFPARQNPLPWMN 337


>gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp.
           MWYL1]
 gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1]
          Length = 377

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D    K    L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDLSTDR---KDFQRLEEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ------ 167
             ++   +F E +HS ++ +II ++  D  ++F+       IT +A+   +Y        
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPTKIFDDIVTNEEITKRADSVSKYYDRLIEMV 165

Query: 168 ----TLSSPSFTT---GTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANK 216
               T+   +F     G+ +     L+      +    V E + FY  FA   +      
Sbjct: 166 NLYNTMGMGTFDVPGRGSIEISMPKLKKALYLTIASVNVLEAIRFYVSFACSFAFAERTL 225

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +    ++P +     E Q + R +  EA   E
Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHMLNLMASGKDDPEMAVIAAECQDEVRQIFIEAAEQE 285

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLNA    QY+++I N R   +GLE  F    NP PW++
Sbjct: 286 KEWATYLFKDGSMIGLNAQILGQYVEYITNVRMQAVGLETCFATKHNPIPWIN 338


>gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 342

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 19/290 (6%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           ++ Y     NHW+P+E+PM  D + +     L  + +   KR +G  A  +S+     V 
Sbjct: 38  YKLYRVLIGNHWIPSEIPMNVDKSDFPM---LPTNTQNTFKRIIGLLAVLDSM-QTMFVG 93

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKAN 160
            +  +L++            +E +H+ ++ Y+++SL    ++ E+F  ++  P I  K N
Sbjct: 94  DVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSSLVSYTEQLEIFEYWKNDP-ILLKRN 152

Query: 161 WALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
             ++  Y     SPS  T  K           V  +V EG++FY  FA   +L R  KM+
Sbjct: 153 LFIRDAYQAFRESPSPETFFK---------ALVADMVLEGIFFYAAFAFFYNLARDQKML 203

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
             ++   YI RDE+ H  F  ++  Q+ I+ P L T++ +      + EA   E  +A E
Sbjct: 204 ATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTEQNKTFVYNFMDEAVRHETEWA-E 262

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
            +  G  G++      Y++ IAN R   +GL   ++   N  PW+    D
Sbjct: 263 YVLDGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEGVSNTMPWIRPFSD 312


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 28/341 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +A E++ N+ +KR+         L P +Y    E   +  +++W+ TE     D+  +K+
Sbjct: 98  RALERKTNIFEKRI--------NLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT 149

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129
             GL++ ER  IK  +   A S+  VA       ++  L  PE        A  E  H  
Sbjct: 150 --GLSEVERSAIKNTM--LAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHD 205

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            + +++  LGL+E   F   ++ P I  +    + Y +T    S      D D+E+ + +
Sbjct: 206 AYSHLLEILGLNEE--FKELKKKPVIMKR----VHYLET----SLKHAKSDDDREYTESI 255

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
            +F +  E +  ++ F  I++  +   M+ GI+   +   ++E +H +FG+D+IN IK E
Sbjct: 256 LLFALFIEHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKE 315

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQI 307
           NP  + +E     + M   +   E         KG +  L      ++++   N+    I
Sbjct: 316 NPEWFDEEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAI 375

Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           GLE LF   E       W  + I   K  +FF  R   Y +
Sbjct: 376 GLEKLFDIDEALLQETEWFDDEIIGTKHGDFFVKRSINYSK 416


>gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           woodyi ATCC 51908]
 gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908]
          Length = 376

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 39/343 (11%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61
           N+  L P+  G+  VNV       AR DV      KY   +EK +    +  W P EV +
Sbjct: 11  NDARLEPMFLGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +
Sbjct: 57  SKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+   E   I  +A+   +Y  TL   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAEYYDTLIKLTQAFHLLGE 173

Query: 177 GTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   D        +E  + L++  +   V E + FY  FA   +      M G A+  +
Sbjct: 174 GTHMIDGRELIVTKREIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    +I   Q   ++P +    KE +Q++  +  +A   E  +A     
Sbjct: 234 LIARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKECEQQAYDIFVKAAEQEKEWARYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            G  +GLN     QY+++I N R   + L+  +    NP PWM
Sbjct: 294 DGSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQITNPLPWM 336


>gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
 gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
          Length = 376

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++   GL D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQ---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160
             ++   AF E +HS ++ +II ++  D   +F+       I ++A              
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMT 165

Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
             W L  + T  ++  S T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHQVNGKSITINLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----E 272
           M G A+  + I RDE+LHL     ++N ++         E  ++SR   ++  +L    E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R H +GL+  FK   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYIEYITNIRMHAVGLDLPFKTRSNPIPWIN 337


>gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 322

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AYA E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
 gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
          Length = 347

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 13/302 (4%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P EV M  D   W ++  + + E+ +    +G  A  +S+      +A Y ++ +   
Sbjct: 52  WIPDEVSMSKDKVQWATE--MNEMEQELFLNAIGILAVLDSIATYFDNVAAY-YIRDSAI 108

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  +   A  E +H+ ++ YI++S+      L    R       K N  +     L    
Sbjct: 109 KALMAFVAAMETIHNESYTYILSSVSSKAVSLDVFER------PKKNEFMIRRNKLMMDL 162

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           F    ++   E      V     EG+ F  GF       R  KM G     QYI RDE  
Sbjct: 163 FDEFIQNPTPETFAKGLVAMSGLEGLCFVNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMK 222

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H  F   ++  I  + P L T+EF +       E   LE  +  E + K    ++    +
Sbjct: 223 HSYFQTILVRDILTQYPELNTEEFSEFVYDFFTELVQLEREFC-EDLYKNTPDIDIEEVK 281

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVIDLKKEK-NFFETRVTEYQQGAELK 350
           +Y+ + AN     +GL+ +F   +NP PW++  +  +L   K +FFE +   Y +  E K
Sbjct: 282 EYIGYRANLILDNLGLDQIFAAKKNPMPWITAFDPDNLNNTKRDFFEDKEVNYGKANEQK 341

Query: 351 WD 352
            D
Sbjct: 342 ND 343


>gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 394

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 26/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D A ++    L  +++ +   NL +    +S+      +A   + S PE 
Sbjct: 65  WRPEEVSLQKDRADYQQ---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 121

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
              +      E VHS ++ +II ++  D  ++F+       +     S+T   +  LQ  
Sbjct: 122 ESAMNIWQTMEMVHSRSYTHIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAA 181

Query: 167 QTLSSP-SFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216
           Q   +  S+    ++ D      +E  + L+       + EG+ FY  FA   + G    
Sbjct: 182 QEWGAGNSWEHALEEVDSAKWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRT--MLHEATLLEI 273
           M G A+    I RDES H+    ++IN+ K  ++P +     Q+++    M  +    EI
Sbjct: 242 MEGNAKIISLIARDESQHMTITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEI 301

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPW 322
            +A      G  +GLNA   ++Y+++ ANRR   IG++ +F    + NP PW
Sbjct: 302 IWADYLFRDGSMIGLNAKLLQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPW 353


>gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea
           ananatis AJ13355]
          Length = 376

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I A+A    QY        
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T  ++  S T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHQVNGKSVTVSLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A L E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFETRSNPIPWIN 337


>gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 377

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 29/295 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLD-----------------EGELFNMYREVPSIT 156
             ++   +F E +HS ++ +II ++  D                  G++   Y E+ S T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIKRAGDISRYYDELISAT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215
              +   + T T+   + T   +D  ++    L +  V   E + FY  FA   +     
Sbjct: 166 NDYHRLGEGTHTVDGKTITINLRDLKKKLY--LCIMSVNALEAIRFYVSFACSFAFAERE 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLL 271
            M G A+  + I RDE+LHL     ++N ++   ++P +    KE + +   +   A   
Sbjct: 224 LMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAKESEAECFDIFKRAAEQ 283

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
           E  +A      G  +GLN     QY+++I N R + +GLE  +   T+NP PW++
Sbjct: 284 EKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMNAVGLEHAYTGATQNPIPWIN 338


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 48/354 (13%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            + +++ N+ +KR+         L P +Y    E   +  +++W+ TE     D+  +K 
Sbjct: 95  HSKDRKHNIFEKRI--------NLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFKV 146

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129
           +  L+  ER +IKR +   A S+  V+       IY  +  PE        A  E  H  
Sbjct: 147 R--LSHPEREVIKRTM--LAISQIEVSVKTFWGNIYTKMPKPEIGSVGATFAESEVRHHD 202

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            + +++  LGL++   F+   E P I  +  +           +      + ++E+ + +
Sbjct: 203 AYSHLLEILGLNDE--FSKLEENPDIMTRVRYL--------ESALKHANSEDNKEYSESI 252

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
            +F +  E +  ++ F  I+S  +   M+ GI+   +   ++E LH NFGID+I  IK E
Sbjct: 253 LLFSLFIEHVSLFSQFLIIMSFNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQE 312

Query: 249 NPHLWTKEFQQKSRTML-----HEATLLEIAYAH---ETMPKGFVGLNAPSCEQYMQFIA 300
           NP  + +E+QQ  RT+       E+ +++  YA    + +PK           Q  +FI 
Sbjct: 313 NPSWFNEEYQQSVRTLCLQAFKSESKIIDWIYAEGELDFIPKA----------QVKEFIK 362

Query: 301 NR---RCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NR       I +E +F+  E       W  + I   K  +FF  R   Y + ++
Sbjct: 363 NRFNQSLQSIDIEKVFEIDEKLLEKTEWFDDEIIGTKHGDFFVKRSINYNKRSK 416


>gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp.
           HTCC2999]
          Length = 376

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 30/299 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++   GL+D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQGRSPNIALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +I+ +L  D   +F    E   I  +A    +Y   L    
Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKRRAADISKYYDDLI--- 162

Query: 174 FTT--------GTKDAD--------QEFLQDLFVF---YVVFEGMWFYTGFAQILSLGRA 214
           F T        GT + +        +E  + L++        E + FY  FA   +    
Sbjct: 163 FATQLWQTQGEGTHEVNGETHIINMRELKKKLYLCMNSVNALEAIRFYVSFACTFAFAER 222

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATL 270
             M G ++  + I RDE+LHL     V+N      ++P +    KE +Q++R +   A  
Sbjct: 223 ELMEGNSKIIRLIARDENLHLTSTQHVLNLWAKGKDDPEMAEIAKECEQEARDIFLNAVQ 282

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
            E  +A      G  +GLN      Y+++IAN+R   IGL   F  + NP PWM+  ++
Sbjct: 283 QEKEWAAFLFNNGSMIGLNEEILCSYVEYIANQRMAAIGLGQPFDVSSNPLPWMNNYLN 341


>gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01]
          Length = 381

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 37/323 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + +++   L  +++ +   NL +    +S+      LA   + S PE 
Sbjct: 52  WRPEEVSLQKDRSDYQN---LRPEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPEL 108

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
              +    F E +HS ++ +II +L     E+F+       I  +A      + T S  S
Sbjct: 109 ESCMEVWGFMEMIHSRSYTHIIKNLYPQPEEVFSTILSDSKIMERAK-----SVTESYDS 163

Query: 174 FTTGTKDADQ-------------------EFLQDLF--VFYV-VFEGMWFYTGFAQILSL 211
           F       D                    E  + LF  V  V + EG+ FY  FA   + 
Sbjct: 164 FINAAHHYDNGNGWKFAKEGVPASQAERYELKRKLFRAVMTVNILEGIRFYVSFACSFAF 223

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK---SRTMLHEA 268
           G    M G A+    I RDE+ HL    ++IN  +  +     K + ++   + ++   A
Sbjct: 224 GELKVMEGSAKIISLIARDENQHLFLTQNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAA 283

Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSE 325
              E A+A      G  +GL+      Y+++IANRR   IG++P+++     NP PWM  
Sbjct: 284 VDQEKAWAQYLFKTGSMIGLSEKLLCNYVEWIANRRMKAIGIKPIYEIPANSNPLPWMDH 343

Query: 326 VIDLKKEKNFF-ETRVTEYQQGA 347
            +  K  +N   ET +  Y  G 
Sbjct: 344 WLKSKGVQNAPQETEIESYIVGG 366


>gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
 gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 34/321 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y W+   Y     N W P+EV   ++    K  + LTD+E+ + K      + ++S  A
Sbjct: 34  RYKWSVNLYDLMNANTWFPSEVNTANE---KKHFDLLTDNEQAIYKLTFAQLSFNDS--A 88

Query: 98  NNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
               L+ +R L+N    +  L  Q  +E  HS ++  ++ + G +  E+F++Y+   ++ 
Sbjct: 89  QEEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG-NSDEVFDLYKHDAALN 147

Query: 157 AK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            K    A Q+ + +   S       A++  L  +    V  EG++F  GF+ I  LG  +
Sbjct: 148 RKNQRIANQFARYIDGNS-------AEEMLLSAMAS--VNLEGIYFLLGFSYIYVLG--D 196

Query: 216 KMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           K+ G  +  ++I RDE + HL    ++   I  EN          K+  M+ EA  +E+ 
Sbjct: 197 KVPGARDMIKFIARDEINTHLPLFANIFKTIYKENK--IPASIVDKAYEMIQEAVDIELE 254

Query: 275 YAH---ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID--L 329
           Y     E  P   +GL     E+ +   AN R ++IGLEP+F+  E P  ++ ++++  L
Sbjct: 255 YGKYLLENYP--IMGLTDELMEKTVYNYANDRLNKIGLEPIFE--ETPQTYLQKLVEKHL 310

Query: 330 KK---EKNFFETRVTEYQQGA 347
           K      NFFE+ V  Y + +
Sbjct: 311 KMNDVRSNFFESNVANYAKNS 331


>gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103]
 gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103]
          Length = 387

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 60  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 116

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I A+A    QY        
Sbjct: 117 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 176

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T  ++  S T   +   ++    L     + E + FY  FA   +      
Sbjct: 177 SYWHLLGEGTHQVNGKSVTVSLRALKKQLYICLMSVNAL-EAIRFYVSFACSFAFAEREL 235

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A L E
Sbjct: 236 MEGNAKIIKLIARDEALHLTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQE 295

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 296 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFETRSNPIPWIN 348


>gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki]
          Length = 322

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E + +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus
           flagellatus KT]
 gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Methylobacillus flagellatus KT]
          Length = 377

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++   GL + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162
             ++   AF E +HS ++ +II ++  D   +F+      +I A+A+           + 
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVARASDISAYYDDLIHYT 165

Query: 163 LQYTQTLSSPSFTTG-TKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217
           + Y+Q         G TK  +   L+ L    +    + E + FY  FA   +      M
Sbjct: 166 MLYSQLGKGDHVINGETKTVNLRELKKLLYLCLMSVNILEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P       E Q +   M   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNIMRSGQDDPEFAGIASELQDECFEMFKRAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F   + NP PW++
Sbjct: 286 KWADYLFKDGSMIGLNRDILCQYVEYITNNRMASVGLSAAFPNAKNNPIPWIN 338


>gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           E33L]
 gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           E33L]
 gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis]
 gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 322

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 384

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K  +   +E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGMHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +    +E Q++   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 187

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG+ FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T
Sbjct: 25  ILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQT 84

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF- 313
           +E  + +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+ 
Sbjct: 85  EELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYP 143

Query: 314 KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
            +++N   W+    D   + + +FFE R + Y++
Sbjct: 144 GHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177


>gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
 gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
          Length = 322

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E+++ KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIVYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           W3-18-1]
 gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           putrefaciens CN-32]
 gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. W3-18-1]
 gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella putrefaciens CN-32]
 gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200]
          Length = 376

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 28/293 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDY---NDLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + R    I    +  ++ T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILRRATDIAEYYDHLIKLT 165

Query: 167 QTLSSPSFTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215
           Q  +   F  GT   D E L        + L++  +     E + FY  FA   +     
Sbjct: 166 QVFNL--FGAGTHLIDGEELVVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERK 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLL 271
            M G A+  + I RDE+LHLN    ++N  Q   ++P +     + QQ++  +  +A   
Sbjct: 224 LMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDPEMGEIAAQCQQEAYDLFLKAAEQ 283

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           E  +A      G  +GLN     QY++FI N+R   + L   +  + NP PWM
Sbjct: 284 EKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPESTNPLPWM 336


>gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Ames]
 gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Sterne]
 gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis
           str. A2012]
 gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis str. Al Hakam]
 gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. A1055]
 gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Kruger B]
 gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Vollum]
 gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Australia 94]
 gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis CI]
 gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Ames]
 gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Sterne]
 gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus
           anthracis]
 gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bacillus thuringiensis str. Al Hakam]
 gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus]
 gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 322

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
 gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
          Length = 322

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
 gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi]
 gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
          Length = 322

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 376

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 28/298 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    LTD E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSIT--------AK 158
             ++   +F E +HS ++ +I+ +L  D  E+F        + R    I+        A 
Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165

Query: 159 ANWALQY--TQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215
             W  Q     T++  ++T    +  ++    L +  V   E + FY  FA   +     
Sbjct: 166 QLWQTQGEGVHTVNGTAYTINMYELKKKLY--LCMNSVNALEAIRFYVSFACTFAFAERK 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLL 271
            M G ++  + I RDE+LHL+    ++N      ++P +    +E ++++R +   A   
Sbjct: 224 LMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAQECKEEARAIFMNAVEQ 283

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           E  +A      G  +GLN     QY+++IAN+R   IGL+  F  + NP PWM+  ++
Sbjct: 284 EKEWADYLFKTGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFDISSNPLPWMNNYLN 341


>gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
 gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
          Length = 378

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   NGL D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 51  WRPEEVDVSRDRIDY---NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y  TL   +
Sbjct: 108 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMT 167

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   +        +   + L++  +     E + FY  FA   +      M
Sbjct: 168 NYYHMFGEGTHTCNGKQITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E + +   +  +A   E 
Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEK 287

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 288 EWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 339


>gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
 gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLDEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A L E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella
           violacea DSS12]
 gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           violacea DSS12]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 143/343 (41%), Gaps = 39/343 (11%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61
           NN  L P+  G+  VNV       AR DV      KY   +EK +    +  W P EV +
Sbjct: 11  NNARLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L D E+ +   NL +    +S+   +  +A    +S PE   ++   +
Sbjct: 57  SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------S 170
           F E +HS ++ +II ++  D   +F+   E   I  +A    QY   L            
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGE 173

Query: 171 SPSFTTG-----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                 G     T+   ++ L    V   V E + FY  FA   +    N M G A+  +
Sbjct: 174 GTHIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    ++  ++   ++P +    KE +Q +  +  +A   E  +A     
Sbjct: 234 LIARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            G  +GLN     QY+++I N R   + L   +    NP PWM
Sbjct: 294 DGSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWM 336


>gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           piezotolerans WP3]
 gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           piezotolerans WP3]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + S   L   E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSKDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRATDIAAYYDKLIRLS 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G+   D E ++         L++  V   V E + FY  FA   +    N M
Sbjct: 166 QACQLLGEGSHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERNVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    ++  +    ++P +    KE +Q +  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFVKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N R   + LE  +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQSNPLPWM 336


>gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni]
          Length = 322

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           B4264]
 gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
 gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus]
 gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus]
 gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus]
 gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           B4264]
 gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
          Length = 322

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
 gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
          Length = 322

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A L E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 14579]
 gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
 gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 14579]
 gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis]
 gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni]
 gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis]
 gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
          Length = 322

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae]
          Length = 213

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 20/211 (9%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           WE Y     + W   E+ +  D   W+S   LT  E+  IK  L FFA+S+ +V  N+  
Sbjct: 6   WEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVLENLAG 62

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKA 159
                +  PE R +   Q   E +HS T+  +I        ++ ++ N    +P++  KA
Sbjct: 63  QFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPAVAEKA 122

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WA+Q+ Q  +S             F + L  F  V EG+ F   F  I  L +   M G
Sbjct: 123 KWAVQWMQRENS-------------FTERLVAFAAV-EGILFSGSFCAIYWLKKRGLMPG 168

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +    + I RDE LH +F   +  +++   P
Sbjct: 169 LTFSNELISRDEGLHADFACLIYRKLQNHLP 199


>gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
 gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+  E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium
           profundum SS9]
 gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit
           [Photobacterium profundum SS9]
          Length = 377

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 33/297 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A    +Y        
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRAGDISKYYDDLIAAT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213
                      T++  + T   +    E  + L+V  +     E + FY  FA   +   
Sbjct: 166 SDYHRLGEGKHTVNGETITVNLR----EIKKKLYVCMMSVNALEAIRFYVSFACSFAFAE 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEAT 269
              M G A+  + I RDE+LHL     ++N +  + ++P +    +E QQ+   +  EA 
Sbjct: 222 REVMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQQECFDLFKEAA 281

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             E  +A      G  +GLN     QY+++I N R   +GLE  +    +NP PW++
Sbjct: 282 EQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLEQAYPGANQNPIPWIN 338


>gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
 gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P        A +E    + V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PQV------AKKELYMAM-VASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIYTS--IGL-VEE 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti]
 gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota]
 gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis]
 gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus]
 gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae]
 gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 322

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 376

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     +D  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
 gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
          Length = 377

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  +   +F+   E   I  +A    +Y   L S +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALISAT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G+  A+         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGSHSANGVPFTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAAECEQECFDIFKAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL P +   T+NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYDGATQNPIPWIN 338


>gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 376

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A L E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
 gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
          Length = 324

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 137/317 (43%), Gaps = 18/317 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   A  E
Sbjct: 10  LKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFRV--NCTDAERSVIKKTMLAIAQVE 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V       IY  L  PE     +  A  E  H   + +++  LGL++   F    E+P
Sbjct: 68  VAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERIEEIP 124

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  +  +       L+S    TG++D ++ F   + +F +  E +  ++ F  +LS  +
Sbjct: 125 ALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIMLSFDK 176

Query: 214 ANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
             K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA   E
Sbjct: 177 HEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAYDAE 236

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVID 328
                     G +  L  P  + +++   N     + ++P+F+          W  E I 
Sbjct: 237 QKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYEEIL 296

Query: 329 LKKEKNFFETRVTEYQQ 345
           L K  +FF  R T Y +
Sbjct: 297 LTKGNDFFSKRSTSYSK 313


>gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
 gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
          Length = 376

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L + +
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILKRARDISSYYDELINLT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT            ++  + L++  +     E + FY  FA   +      M
Sbjct: 166 NLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 286 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337


>gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           weihenstephanensis KBAB4]
 gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
 gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
          Length = 322

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis HI4320]
          Length = 376

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L + +
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT            ++  + L++  +     E + FY  FA   +      M
Sbjct: 166 NLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 286 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337


>gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae]
 gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi]
          Length = 322

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 377

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSHDRIDYQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  + G++F+                  Y ++   T
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNNPGQVFDDIVTNEQILKRAGSISCFYDDLIEAT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           A  N   + T +++    T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 ALYNLHGEGTHSVAGQMRTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +   + E +Q    +  EA + E
Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEISAECEQACFEIFKEAAIQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R + +GL+P F    +NP PW++
Sbjct: 285 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGAKQNPIPWIN 338


>gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           tasmaniensis Et1/99]
 gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           tasmaniensis Et1/99]
          Length = 376

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160
             ++   AF E +HS ++ +II ++  D   +F+       I ++A              
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165

Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
             W L  + T  ++  + T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHQVNGKTITVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    KE +Q+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R + +GL+  FK   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337


>gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai]
 gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri]
 gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana]
 gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis]
          Length = 322

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 344

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 129/329 (39%), Gaps = 41/329 (12%)

Query: 36  PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGF 88
           P  Y WA E   + A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 17  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+   F
Sbjct: 77  FTEMDRTVGEGYT-KLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKAF 135

Query: 147 NMYREVPSI-------TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             Y+E+             A+W+             TG                   EG+
Sbjct: 136 ASYKEMRDKLEVMGENRIDASWSEPLQAACILAQLLTG-------------------EGV 176

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             +  F  +L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q
Sbjct: 177 GLFGAFTVLLNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQ 236

Query: 260 KSRTMLHEATLLEIAY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + R ++ +    E+ Y   A E  P+    L      +Y+ ++   R  +  L    +  
Sbjct: 237 EIRYLIEDYREAEVKYLVLAFEKGPQH--DLTFEQTVEYIDYLCRLRLFECELLKEHQVG 294

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           ENP PWM  +I+  +  NFFE +VT+Y  
Sbjct: 295 ENPLPWMEWMINAARHDNFFEKKVTDYSH 323


>gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 376

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I  +A    QY        
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T +++  + T   +D  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHSVNGKTITVNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
 gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
          Length = 339

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 129/330 (39%), Gaps = 41/330 (12%)

Query: 36  PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGF 88
           P  Y WA E   + A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 12  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+   F
Sbjct: 72  FTEMDRTVGEGYT-KLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKAF 130

Query: 147 NMYREVPSI-------TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             Y+E+             A+W+             TG                   EG+
Sbjct: 131 ASYKEMRDKLEVMGENRIDASWSEPLQAACILAQLLTG-------------------EGV 171

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             +  F  +L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q
Sbjct: 172 GLFGAFTVLLNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQ 231

Query: 260 KSRTMLHEATLLEIAY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + R ++ +    E+ Y   A E  P+    L      +Y+ ++   R  +  L    +  
Sbjct: 232 EIRYLIEDYREAEVKYLVLAFEKGPQH--DLTFEQTVEYIDYLCRLRLFECELLKEHQVG 289

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           ENP PWM  +I+  +  NFFE +VT+Y   
Sbjct: 290 ENPLPWMEWMINAARHDNFFEKKVTDYSHS 319


>gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii ATCC 27126]
          Length = 376

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    LTD E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKAN---WAL 163
             ++   +F E +HS ++ +I+ +L  D  E+F        + R    I+   +   +A 
Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165

Query: 164 QYTQTLSSPSFTT-GTKDADQ--EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217
           Q  QT      T  G        E  + L++        E + FY  FA   +      M
Sbjct: 166 QLWQTQGEGVHTVNGVAHTINMYELKKKLYLCMNSVNALEAIRFYVSFACTFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265
            G ++  + I RDE+LHL+    ++N        LW K            E ++++R + 
Sbjct: 226 EGNSKIIRLIARDENLHLSSTQHILN--------LWAKGKDDPEMAQIAEECKEEARAIF 277

Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             A   E  +A      G  +GLN     QY+++IAN+R   IGL+  F+ + NP PWM+
Sbjct: 278 MNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFEISSNPLPWMN 337

Query: 325 EVID 328
             ++
Sbjct: 338 NYLN 341


>gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
 gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
          Length = 322

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA    +Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIYTS--IGL-VDD 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05
           cluster bacterium]
          Length = 319

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 22/277 (7%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +
Sbjct: 6   LLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTH 65

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------SSPSFTTGTKDADQ 183
           II ++  + G +F+   +   I  +A    ++   L                   K+AD 
Sbjct: 66  IIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGKNADV 125

Query: 184 EFL---QDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
           +     + L++  +   + E + FY  FA   +      M G A+  + I RDE+LHL  
Sbjct: 126 DLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLTG 185

Query: 238 GIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              ++N ++   ++P +    KE + +   M  EA   E  +A      G  +GLNA   
Sbjct: 186 TQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLNADIL 245

Query: 293 EQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID 328
           +QY+++I N R + +GL+P+F ++  NP PW++  +D
Sbjct: 246 KQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLD 282


>gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
 gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
          Length = 377

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  +   +F+   E   I  +A    +Y   L + +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVKRAGDISKYYDDLITVT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G   A+        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYNRFGEGNHSANGIPFTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q    +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMVEIATECEQDCFDLFKAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL P ++  T+NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYEGATQNPIPWIN 338


>gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 376

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++S +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNSKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB]
 gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB]
          Length = 376

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I A+A    +Y   L   +
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165

Query: 174 -----FTTGT-KDADQEFLQDLFVF----YVVF------EGMWFYTGFAQILSLGRANKM 217
                   GT K  D++ +  L       Y+        E + FY  FA   +      M
Sbjct: 166 NYWHQLGEGTHKVNDKQVVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A L E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 286 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
 gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
          Length = 322

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA    +Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VDD 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
 gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
          Length = 322

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 377

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINDPAVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G    + E +        + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGKHQLNDETINVSLTELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++  +++       +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGLDDFTFLQIAEECKQQCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP + K T NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPKATSNPIPWIN 338


>gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           protein [Aeromonas veronii B565]
 gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Aeromonas veronii B565]
          Length = 393

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 65  WRPEEVDVSRDRIDYQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 121

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++     ++F+                  Y ++   T
Sbjct: 122 ETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILKRAGSISHFYDDLIEAT 181

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           A  N   + T T++    T   ++  ++    L     + E + FY  FA   +      
Sbjct: 182 ALYNLHGEGTHTVAGREVTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 240

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E +Q    +  EA + E
Sbjct: 241 MEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEIAAECEQACFEIFKEAAIQE 300

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+P F  T +NP PW++
Sbjct: 301 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMSAVGLQPAFAGTKQNPIPWIN 354


>gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
 gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
          Length = 324

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 18/317 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   A  E
Sbjct: 10  LKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFRV--NCTDAERSVIKKTMLAIAQVE 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V       IY  L  PE     +  A  E  H   + +++  LGL++   F    E+P
Sbjct: 68  VAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERIEEIP 124

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  +  +       L+S    TG++D ++ F   + +F +  E +  ++ F  +LS  +
Sbjct: 125 ALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIMLSFDK 176

Query: 214 ANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
             K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA   E
Sbjct: 177 HEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAYDAE 236

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVID 328
                     G +  L  P  + +++   N     + ++P+F+          W  E + 
Sbjct: 237 QKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYEEVL 296

Query: 329 LKKEKNFFETRVTEYQQ 345
           L K  +FF  R T Y +
Sbjct: 297 LTKGNDFFSKRSTSYSK 313


>gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
 gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
          Length = 322

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F    + P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIVTSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 377

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   + L+  E+ +   NL +    +S+   +    +   +S PE 
Sbjct: 49  WRPEEIDVSKDRLDF---SNLSVHEQHIFLSNLKYQTLLDSIQGRSPNAVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  ++F+   + P I  +A    ++   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKVFDDIVDNPFILERATGIAKFYDELYQLS 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G    D + ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 QLYNLYGEGRHVIDGKPVEVNLRLLKTKLYLCLVAINVLEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN  Q   ++P +    ++ QQ++  +  +A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMQWGKDDPDMVEIAQDCQQQAIEIFKDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
           A+A      G  +GLN     QY+++I N R   IGL P+F   + NP PW++
Sbjct: 286 AWAKYLFKNGSMIGLNENILVQYVEYITNLRMDAIGLPPIFAAIKNNPIPWIN 338


>gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
 gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
          Length = 340

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +F +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
 gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
          Length = 377

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT +   E          + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGTHNIKGEEVKVNLYDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q    +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I+N R   +GL+  + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWIN 338


>gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 10987]
 gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           ATCC 10987]
          Length = 322

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp.
           SN2]
          Length = 376

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    LTD E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +I+ +L  D  E+F        + R    I+   +  +  T
Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165

Query: 167 QTLSSPSFTTGTKDADQ------EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217
           Q   +      T D         E  + LF+        E + FY  FA   +      M
Sbjct: 166 QLWQTQGEGVHTVDGVPHTINMYELKKKLFLCMNSVNALEAIRFYVSFACTFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G ++  + I RDE+LHL+    ++N      ++P +    ++ ++++R +   A   E 
Sbjct: 226 EGNSKIIRLIARDENLHLSSTQHILNLWARSKDDPEMAQIAQDCKEEARAIFMNAVEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN      Y+++IAN+R   IGL+  F+ + NP PWM+
Sbjct: 286 EWADYLFKTGSMIGLNKEILCSYVEYIANQRMTAIGLDAPFEISSNPLPWMN 337


>gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis]
 gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae]
 gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto]
 gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 322

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
 gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
          Length = 377

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +    GL D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++ +D   +F+       I  +A    +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNISVDPSSIFDDIVRNKHILERAQDISKYYDELIELT 165

Query: 174 -----FTTGTKDADQ--------EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G  + +         E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QFYEMFGEGVHNVNGREIKVSIYELKKRLYLCLMAVNVLEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +    ++P +     E + +   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNIMSSGADDPEMAHIASELKNQCFELFKSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GLE  F  + +NP PW++
Sbjct: 286 AWAEYLFKDGSMIGLNKEILIQYVEYITNIRMSAVGLEEAFPQSKQNPIPWIN 338


>gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 322

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 19/294 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E+   KR LG     ++      +  +  H+ N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQTTYKRVLGGLTLLDTKQGGEGMPLVLVHIENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+   + P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGIITGYYRKLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAP 290
           S+H  F   +  QI  E      ++ Q++++ +L E   +E AY  E     G VG    
Sbjct: 196 SIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIYASIGLVG---- 251

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
              +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 252 EVNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
 gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
          Length = 376

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I A+A    +Y   L   +
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165

Query: 174 -----FTTGTKDA-DQEFLQDLFVF----YVVF------EGMWFYTGFAQILSLGRANKM 217
                   GT    D++ +  L       Y+        E + FY  FA   +      M
Sbjct: 166 NYWHQLGEGTHQVNDKQVVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A L E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 286 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-66c26]
 gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CIP 107932]
 gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-76w55]
 gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-97b34]
 gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-37x79]
 gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile CD196]
 gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile R20291]
 gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CD196]
 gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile R20291]
          Length = 323

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 23/298 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++     N + 
Sbjct: 34  WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170
           +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  L QY  T  
Sbjct: 91  KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENT-- 148

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      +QE L    V  V  E   FY+GF   L L    KMV   E    I+RD
Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ESLH  +   +  +I      +  K  ++K  ++L+     EI Y +    +   GL   
Sbjct: 199 ESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRES--GLEKE 256

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               ++++ ANR    +G E L+     NP   ++ +    K  +FF T+   YQ+G 
Sbjct: 257 VV-NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312


>gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
 gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
          Length = 339

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    ES+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
 gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
          Length = 322

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+RDE
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E      +GL    
Sbjct: 196 SIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304


>gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  I++P +    +E +Q    +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GLE  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLELPFQTRSNPIPWIN 337


>gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + L  F  V EG++F   F  I  L +   M G+    + I R E LH +F   + + 
Sbjct: 98  FAERLIAFACV-EGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 156

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P  W     QK   ++HEA  +E  +  E +P   +G+ A     Y++F+ +R  
Sbjct: 157 LQKQLP--W-----QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 209

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             +G E  +   ENPF WM E I L+   NFF+ R+ +YQ+ +
Sbjct: 210 VALGYERKYN-VENPFDWM-EFIFLQGNANFFQRRMGDYQKAS 250


>gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas atlantica T6c]
 gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 40/304 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    L++ E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             +    +F E +HS ++ +I+ +L  D   +F+   E   I  +A       +  + YT
Sbjct: 106 ETWTETWSFFETIHSRSYTHILRNLFGDPSSIFSDIVENEQIKKRAADISKYYDDLIFYT 165

Query: 167 QTLSSPSFTTGTKDADQEFLQ------DLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217
           Q   +    T T + ++  +        LF+        E + FY  FA   +      M
Sbjct: 166 QLWQTLGEGTHTINGEEHVVTMRTLKIKLFLCMNSVNALEAIRFYVSFACTFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265
            G ++  + I RDE+LHL     ++N        LW K            E+++++  + 
Sbjct: 226 EGNSKIIRLISRDENLHLTSTQHILN--------LWAKGKDDPEMAEIALEYKEEATNIF 277

Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A   E  +A      G  +GLN     QY++FIAN R   IGL+  F    NP PWM+
Sbjct: 278 LDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLDQPFDIKNNPLPWMN 337

Query: 325 EVID 328
             ++
Sbjct: 338 NYLN 341


>gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
 gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
          Length = 375

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    ES+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
 gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
          Length = 377

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHLLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDESLHLN    +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDESLHLNGTQHMINLLRNGQDDFIFMQIAEEVKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPKAYPEATTNPIPWIN 338


>gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 376

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y  TL   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKKLYICLMSVNALEAVRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL      +N ++   ++P +     E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 286 DWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWIN 337


>gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 376

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   ++S   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDISKDRIDYQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLS-- 170
             ++   +F E +HS ++ +II ++      +F+       I  +A + ++ Y   +   
Sbjct: 106 ETWVETWSFFETIHSRSYTHIIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLT 165

Query: 171 ------SPSFTTGTKDAD----QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                  P   T  K+       E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 NYYHILGPGIHTINKNIVAVNLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDESLHL+    ++N  Q   ++P +   +  +Q +S  +   A   E 
Sbjct: 226 EGNAKIIRFIARDESLHLSATQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +AH     G  +GLN     QY+++I N R   IGL+  F    N  PW++
Sbjct: 286 MWAHYLFKDGSMIGLNKEILCQYIEYITNIRMQAIGLKAPFHIKANVIPWIN 337


>gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 841

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + L  F  V EG++F   F  I  L +   M G+    + I R E LH +F   + + 
Sbjct: 670 FAERLIAFACV-EGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 728

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P  W     QK   ++HEA  +E  +  E +P   +G+ A     Y++F+ +R  
Sbjct: 729 LQKQLP--W-----QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 781

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             +G E  +   ENPF WM E I L+   NFF+ R+ +YQ+ +
Sbjct: 782 VALGYERKYN-VENPFDWM-EFIFLQGNANFFQRRMGDYQKAS 822


>gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 378

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 51  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+   E   I  +A     +   L   +
Sbjct: 108 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISGFYDDLIEMT 167

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   +        ++  + L++  +     E + FY  FA   +      M
Sbjct: 168 NYYHMFGEGTHTCNGKQVTVSLRQLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +  +A   E 
Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVQAAEQEK 287

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 288 EWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 339


>gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
          Length = 377

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   I A+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEYIIARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K  +   +E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGVHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +    +E Q++   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPIGFEGANQNPIPWIN 338


>gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 376

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
          Length = 340

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVAFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
           Group P6(1)22
          Length = 340

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
 gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
          Length = 319

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 133/302 (44%), Gaps = 24/302 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110
           +HW+P EV    D   W+    L+ +E+   K  L FFA  + LV  N+V    + +S+ 
Sbjct: 27  SHWIPEEVDTSKDAQDWQL---LSKEEKSFAKLILAFFAQFDGLVVENLVRHFQQEVSSF 83

Query: 111 -PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
             E   + + QA  E +H+ T+  +I  L       +  +      SI   A+W  ++  
Sbjct: 84  AKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIADWVEKWM- 142

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              +P+            L +  + +   EG+ F   FA +     +N++ G+    ++I
Sbjct: 143 ---NPAVP----------LPERIIAFAALEGVIFTGAFAAVYYFTISNRLKGLRTANEWI 189

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE+LH  F  +V+    ++   ++ +  Q++   +L  A      +   ++    V +
Sbjct: 190 SRDEALHKKFA-EVLYNFLVDELKVFERVSQERCHEILTSAIEAVTDFIKYSLRLDNVNI 248

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +A     YM+   +     +  E ++   EN   +M  +I L+ + NFFE  +T+Y +G 
Sbjct: 249 DADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVITDYSKGM 306

Query: 348 EL 349
           ++
Sbjct: 307 DM 308


>gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 376

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   AF E +HS ++ +II ++  D   +F+       + +    I+A  +  ++ T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165

Query: 167 ----------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                      T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGVGRHTVNGKTITVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 376

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
 gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
          Length = 340

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 388

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 40/307 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D + ++S   L  +++ +   NL +    +S+      +A   + + PE 
Sbjct: 59  WRPEEVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPEL 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
              +    F E +HS ++ YII ++  +  E+F+   +   I  +AN     + T S   
Sbjct: 116 EGAMNVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILKRAN-----SVTASYDD 170

Query: 174 FTTGTKDADQ-------------------EFLQDLFVFYV---VFEGMWFYTGFAQILSL 211
           F    ++  Q                   E  + L+       + EG+ FY  FA   + 
Sbjct: 171 FINDAQEYGQGRMWEKDWKDSPSSQWTIHELKRKLYRAVANVNILEGIRFYVSFACSFAF 230

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRT----MLH 266
           G    M G A+    I RDE+ HL    +++ N +  ++P +  K+   + R     M  
Sbjct: 231 GELKLMEGSAKIISLISRDENQHLVLTQNILKNWMNGDDPEM--KQIADEERNNVIGMFR 288

Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWM 323
            A   E  +A      G  +GLN     QY+++IAN+R   +G +P++      NP PW 
Sbjct: 289 NAVEEEKEWAEYLFSGGSMIGLNDKLLNQYVEWIANKRMKALGFDPIYDQPLRNNPLPWT 348

Query: 324 SEVIDLK 330
              I  K
Sbjct: 349 QHWISSK 355


>gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile 630]
 gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-63q42]
 gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile ATCC 43255]
 gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Clostridium difficile]
          Length = 323

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 25/299 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++     N + 
Sbjct: 34  WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170
           +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  L QY  T  
Sbjct: 91  KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENT-- 148

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      +QE L    V  V  E   FY+GF   L L    KMV   E    I+RD
Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ESLH  + I ++ Q   ++     KE  ++K  ++L+     EI Y +    +   GL  
Sbjct: 199 ESLHGKY-IGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRES--GLEK 255

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                ++++ ANR    +G E L+     NP   ++ +    K  +FF T+   YQ+G 
Sbjct: 256 EVV-NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312


>gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans]
 gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans]
          Length = 668

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 25/225 (11%)

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D+ E   LFN       I AKA+W L++    ++P        
Sbjct: 448 ENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------- 499

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
               F + L  F  V EG++F + FA I  L +   + G+    + I     LH N    
Sbjct: 500 ----FSERLAAFAAV-EGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHPNCFFS 553

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
             N  +   P       + +   +++E+ L+E  +  E++P   +G+N     +Y++F+A
Sbjct: 554 TFNLQRRRKPA------ESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVA 607

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +    ++G    +  T+NPF +M E I ++ + NFFE RV+EYQ+
Sbjct: 608 DLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650


>gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 245

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 29/237 (12%)

Query: 16  RVNVDDKRM--------LNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +V VD K++        LNAR       +++  L  ++Y WA + Y +   N W+P +V 
Sbjct: 2   KVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q
Sbjct: 62  LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
            F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q           
Sbjct: 118 TFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------- 170

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           + +D+ F + +   Y++ E ++FY GF     L   NKMVG ++  + I RDE  H+
Sbjct: 171 EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHV 226


>gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 393

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 66  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354


>gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 376

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412]
 gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302]
 gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Escherichia coli O157:H7 str. EDL933]
 gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor
           [Escherichia coli]
 gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           dysenteriae Sd197]
 gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           boydii Sb227]
 gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
 gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
 gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           042]
 gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412]
 gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302]
 gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           ETEC H10407]
 gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 3431]
 gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli STEC_7v]
 gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 3594-74]
 gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 376

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           APEC O1]
 gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 420

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 93  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381


>gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
 gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
          Length = 359

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 89  ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 148

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 149 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 207

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 208 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 267

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 268 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 320


>gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
 gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
          Length = 377

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   S   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGSHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338


>gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863]
 gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 393

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 66  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354


>gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
 gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
          Length = 375

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
 gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
          Length = 377

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 25/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N LT  E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-------YT 166
             ++   +F E +HS ++ +I+ +L  D  E+F        I  +AN   +       YT
Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVINDQIKLRANDISRYYDDLIFYT 165

Query: 167 QTLSSPSFTTGTKDADQ------EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217
           Q   +      T D ++      E  + LF+        E + FY  FA   +      M
Sbjct: 166 QLWQTHGEGKITVDGEEHNVTRRELKKKLFLCINSVNALEAIRFYVSFACTFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE++HL     +IN  Q   ++P +    +E   ++  +   A   E 
Sbjct: 226 EGNAKIIRLIARDENVHLTSTQHMINLWQDGEDDPEMAEIAEELADEAYEIFMTAVKQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327
            +AH     G  +GLN     QY+++IAN R   IG + P  +   NP PWM++ +
Sbjct: 286 QWAHYLFRDGSMIGLNESMLCQYVEYIANLRMQAIGYDAPFPEQRSNPLPWMNKYL 341


>gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 377

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L    
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMT 165

Query: 170 ------SSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                    + T   +D      E  + L+V  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGTHTINGEDVKISLHELKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338


>gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina
           loihiensis L2TR]
 gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR]
          Length = 377

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 33/298 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N LT  E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDF---NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-------YT 166
             ++   +F E +HS ++ +I+ +L  D  E+F        I  +AN   +       YT
Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYT 165

Query: 167 QTLSSPSFTTGTKDA----------DQEFLQDLFVF---YVVFEGMWFYTGFAQILSLGR 213
           Q L     T G  D            +E  + LF+        E + FY  FA   +   
Sbjct: 166 QLLQ----THGEGDVVVEGKTHTVTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAE 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEAT 269
              M G A+  + I RDE++HL     ++N  Q   ++P +    +E +  +  +   A 
Sbjct: 222 RELMEGNAKIIKLIARDENVHLTSTQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAV 281

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325
             E  +AH     G  +GLN     QY+++IAN R   IG + P      NP PWM++
Sbjct: 282 KQEKQWAHYLFKDGSMIGLNESMLCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNK 339


>gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 393

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 66  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354


>gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 376

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L    
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMT 165

Query: 170 ------------SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                        +    T    A ++ L    +     E + FY  FA   +      M
Sbjct: 166 NYYHQLGEGVHNVAGKIVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    KE +QK   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKDILCQYIEYITNIRMQAVGLKLPFETRSNPIPWIN 337


>gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM02]
 gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM03]
 gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-HPM05]
          Length = 348

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 144/337 (42%), Gaps = 31/337 (9%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +++  L  +KY WA   +     N W+P    +  D+  + +   +  + R      L +
Sbjct: 28  TNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDINNYVT---MPPNMRRAFDGMLSY 84

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDEGE-LF 146
               +SL    ++  +   ++ PE    +  Q  +E VHS ++ YII T +  D+ + ++
Sbjct: 85  LTFLDSL-QTRVLPLLMPVITAPEVSICMGEQLSQEQVHSQSYAYIIETVIPTDKRDYIY 143

Query: 147 NMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            ++RE P +  +  +    Y + +   +    T     +FL          EG++F+ GF
Sbjct: 144 ELWREDPVLLKRCEYIQNLYDRYIHEMTMENYTISMVSDFL---------LEGIYFFPGF 194

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               ++     M   A+  + I RDE  HL    ++I     E   +W  +   +   + 
Sbjct: 195 RLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIRTGLAEGTLMWDTD---EIIDLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322
            +A   EI +    +  G  G+NA + EQY +++ N R   IGL  +F   +Y+ NP+  
Sbjct: 252 RKAAEYEIEWGLH-IGLGVNGINATTIEQYAKYLCNIRARAIGLPTVFEGRQYSRNPYAH 310

Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQGAEL--KWD 352
           +         D     NFFE+ V  Y+  A++   WD
Sbjct: 311 LERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346


>gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 376

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKAVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
 gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
          Length = 393

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 66  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354


>gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W]
 gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           CFT073]
 gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           sonnei Ss046]
 gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           UTI89]
 gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           536]
 gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI39]
 gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LF82]
 gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
 gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE15]
 gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W]
 gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli ABU 83972]
 gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
 gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
 gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli EPECa14]
 gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli E128010]
 gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           sonnei 53G]
 gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LT-68]
 gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1180]
 gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1357]
 gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli RN587/1]
 gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
 gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
 gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
 gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
           [Escherichia coli AA86]
 gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           dysenteriae 155-74]
 gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 4343-70]
 gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-671]
 gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2747-71]
 gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71]
 gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri VA-6]
 gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-272]
 gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-304]
 gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-227]
          Length = 376

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 405

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 78  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 134

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 135 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 194

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 195 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 253

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 254 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 313

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 314 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 366


>gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
          Length = 420

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 93  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381


>gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 389

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora CFBP1430]
 gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 376

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160
             ++   AF E +HS ++ +II ++  D   +F+       I ++A              
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165

Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
             W L  + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHQVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    KE +Q+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R + +GL+  FK   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILWQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337


>gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
 gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
          Length = 376

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 124/294 (42%), Gaps = 28/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y        
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLT 165

Query: 166 ----------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
                      Q        T  K   Q +L  + V     E + FY  FA   +     
Sbjct: 166 NLYHMYGEGEHQVKGKTVHVTLRKLKKQLYLCLMSVN--ALEAIRFYVSFACSFAFAERE 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLL 271
            M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  EA   
Sbjct: 224 LMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAEECEQECYDLFVEAAEQ 283

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           E  +A     +G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 284 EKEWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337


>gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
 gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
 gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482]
 gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
          Length = 389

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 2457T]
 gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 301]
 gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
          Length = 389

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 449

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 122 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 178

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 179 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 238

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 239 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 297

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 298 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 357

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 358 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 410


>gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
          Length = 449

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 122 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 178

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 179 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 238

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 239 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 297

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 298 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 357

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 358 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 410


>gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
          Length = 376

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G    D++ ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 KLYDLHGEGIYQIDEQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++   ++P +    +  Q+++  +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A+     G  +GLN     QY++FI N R   IGL  +F+   NP PW++
Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337


>gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 377

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y        
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++    +    D  ++    L     + E + FY  FA   +      
Sbjct: 166 NDYHRYGEGTHTINGEEVSIKLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     +IN ++            +E +Q+   +  EA   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 285 KEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWIN 338


>gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
          Length = 389

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
 gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
          Length = 376

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSKDRIDYQQ---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  E+F+       I  +A     Y   L + +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINAT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   + E +        + L++  V   V E + FY  FA   +      M
Sbjct: 166 QQLHQLGEGTHVVNGETIVVSQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +    ++P +   + E  Q+++ +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN      Y+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSDYIEYITNTRMAAVGLPKAFEVKSNPLPWIN 337


>gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 5 str. 8401]
 gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri
           2002017]
          Length = 453

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 126 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 182

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 183 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 242

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 243 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 301

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 302 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 361

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 362 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 414


>gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
          Length = 420

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 93  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381


>gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 389

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
 gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 389

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 62  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350


>gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 376

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRVDFEN---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++      +F+   +   I  +A+   +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVTKQPELIFDDIVDNDKIKERADEVTRYYDDLIEYT 165

Query: 174 -----FTTGTKDA-DQEFLQDLF---------VFYV-VFEGMWFYTGFAQILSLGRANKM 217
                +  G     DQ  + +LF         +  V + E + FY  FA   +      M
Sbjct: 166 SIYNLYGEGKHQINDQTVVINLFELKKKLYRAIMSVNILEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     + +++S  M   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHMLNIMQDGQDDPEMAIVAAQLREESIEMFRTAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F  T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNVRMSAVGLPQQFSITSNPIPWIN 337


>gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 376

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+   T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  +     ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 384

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGVHQVGGKTVVVKLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+P F  + +NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKDILCQYVEYITNHRMIAVGLDPAFPASNQNPIPWIN 345


>gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
 gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
          Length = 375

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           pyrifoliae Ep1/96]
 gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae Ep1/96]
 gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae DSM 12163]
 gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp.
           Ejp617]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160
             ++   AF E +HS ++ +II ++  D   +F+       I ++A              
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165

Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
             W L  + T  ++  + T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHQVNGKTVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +    KE +Q+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R + +GL+  FK   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337


>gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
 gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
          Length = 388

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 60  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 116

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 117 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 176

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   S   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 177 QYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 236

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 237 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 296

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 297 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 349


>gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           succinogenes 130Z]
 gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes
           130Z]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYQVDGKECAVTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFEARSNPIPWIN 337


>gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide
           reductase 1) (B2 protein) (R2 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                  + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 NHYQLFGEGTHQIAGKTITASLRGLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    KE +Q+   +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQQCYDLFVQAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 337


>gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 377

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLSAGFEGANQNPIPWIN 338


>gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS185]
 gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS195]
 gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185]
 gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195]
          Length = 386

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 59  WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   + +E+ S    I A  +  +Q T
Sbjct: 116 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 175

Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D  +  +      + L++  +     E + FY  FA   +      M
Sbjct: 176 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 235

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 236 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 295

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY++FI N+R   + L   +    NP PWM
Sbjct: 296 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEITNPLPWM 346


>gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
 gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
          Length = 372

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 26/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---FASSESLVANNIVLAIYRHLSN 110
           W P EV +  D   ++    L  +E+ +   NL +     S +    N ++L I   +S 
Sbjct: 49  WRPEEVDVSQDRIDYQK---LPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPI---VSI 102

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           PE   ++   +F E +HS ++ +II ++  D   +F+       I A+A    QY   L 
Sbjct: 103 PELETWIETWSFSETIHSRSYTHIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQ 162

Query: 171 SPS-----FTTGTKDADQEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKMV 218
             +     F  G+    +  L++L        +     E + FY  FA   +      M 
Sbjct: 163 QLTALWQLFGEGSHAGHEISLRELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLME 222

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEIA 274
           G A+  + I RDE+LHL     ++N +    ++P +     E +Q+ + +  +A   E  
Sbjct: 223 GNAKIIRLIARDEALHLTGTQHMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKD 282

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +A      G  +GLN      Y+++I N R   +GL+  FK   NP PW++
Sbjct: 283 WADYLFKDGSMIGLNKQILCGYVEYITNIRMQAVGLDAPFKGATNPIPWIN 333


>gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis]
          Length = 197

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 20/204 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V ++ +L    D   + P+KY   WE Y  A  + W   EV +  D   W++   LT DE
Sbjct: 8   VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWEA---LTADE 64

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S 
Sbjct: 65  RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LF+    +P +  KA WAL++              D  + F Q +  F  V
Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRWI-------------DGGKSFAQRVVAFACV 171

Query: 196 FEGMWFYTGFAQILSLGRANKMVG 219
            EG++F      I  L +   M G
Sbjct: 172 -EGIFFSGVSCSIFWLKKRGLMPG 194


>gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica ST-640]
 gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica 020-06]
          Length = 377

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFRLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali
           symbiont]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D  ++F+       I A+A    +Y        
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T  ++  S T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 NYWHLLGEGTHQVAGKSVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
 gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +F +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RD +LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116]
          Length = 377

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLW---TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++  ++  L+    +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFLFMQIAEEEKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATSNPIPWIN 338


>gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA 1090]
 gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae 35/02]
 gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI18]
 gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA6140]
 gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA19]
 gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae MS11]
 gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID18]
 gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID1]
 gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID24-1]
 gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID332]
 gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae NCCP11945]
          Length = 377

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 376

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +K    L   E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDLSRDRADFKK---LPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D  E+F+      SI  +A+    Y  +     
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQ 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +        +E  + LF+  V   V E + FY  FA   +      M
Sbjct: 166 CYYNLLGEGTHMINDVPVVVNMRELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NPHL--WTKEFQQKSRTMLHEATLLE 272
            G A+  + I RDE+LHL  G   + QI  E   +P +     E + +   +   A   E
Sbjct: 226 EGNAKIIKLIARDEALHLT-GTQQMIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLNA     Y+++I N R    G + +F  T+NP PWM+
Sbjct: 285 KEWAKFLFRDGSMIGLNADILGDYVEYITNVRLKASGYKNVFPTTQNPLPWMN 337


>gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI2]
 gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
 gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain
           [Neisseria gonorrhoeae FA 1090]
 gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
          Length = 384

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++P +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-23m63]
 gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
 gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
          Length = 323

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 33/303 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++     N + 
Sbjct: 34  WLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170
           +  L      E +H+ ++  I  +L    +  ELF      P++  KA+  L QY  T  
Sbjct: 91  KAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLVLAQYENT-- 148

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      +QE L    V  V  E   FY+GF   L L    KMV   E    I+RD
Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198

Query: 231 ESLHLNFGIDVINQI-----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           ESLH  +   +  +I     K++   L  K +    R M +E     I Y    + K  V
Sbjct: 199 ESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRESGLEKEVV 258

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                    ++++ ANR    +G E L+     NP   ++ +    K  +FF T+   YQ
Sbjct: 259 --------NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQ 309

Query: 345 QGA 347
           +G 
Sbjct: 310 KGV 312


>gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS223]
 gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223]
 gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678]
          Length = 376

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   + +E+ S    I A  +  +Q T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 165

Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D  +  +      + L++  +     E + FY  FA   +      M
Sbjct: 166 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY++FI N+R   + L   +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEITNPLPWM 336


>gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Nepal516]
 gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Antiqua]
 gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CO92]
 gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 376

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  +     +D  ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +++  ++P +    +E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWIN 337


>gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
 gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLT 165

Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   + E          + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGTHTINGEEVTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWIN 338


>gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           halifaxensis HAW-EB4]
 gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis
           HAW-EB4]
          Length = 376

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A+   +Y   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAKYYDHLIKLS 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G+ + D E ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 QAYHLLGEGSHEIDGEIIEVTTREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +  I Q   ++P +    KE +Q +  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N R   +     +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNETILCQYVEYITNERMKSVNFASPYAEQTNPLPWM 336


>gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           pealeana ATCC 700345]
 gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC
           700345]
          Length = 376

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +FN   E   I  +A+    Y   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILKRASDIANYYDHLIKLS 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G+ + D E ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 QAYHLLGEGSHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    ++  +    ++P +    KE +Q +  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFIKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N R   +     +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNETILCQYVEYITNERMKAVNFASPYAEQTNPLPWM 336


>gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
 gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMT 165

Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   + E          + L+V  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGTHQINGEEVTIKLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338


>gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
 gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 33/297 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A    +Y        
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRAGDISKYYDDLIAAT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213
                      T++  + T   +    E  + L+V  +     E + FY  FA   +   
Sbjct: 166 SDYHRLGEGKHTVNGETITVNLR----EIKKKLYVCMMSVNALEAIRFYVSFACSFAFAE 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEAT 269
              M G A+  + I RDE+LHL     ++N +  + ++P +    +E QQ+   +  EA 
Sbjct: 222 RELMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQQECFEIFKEAA 281

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             E  +A      G  +GLN     QY+++I N R   +GL+  +    +NP PW++
Sbjct: 282 EQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLDQAYPGANQNPIPWIN 338


>gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio
           sp. Ex25]
 gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
 gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. Ex25]
 gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q    +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338


>gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-4]
 gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-7]
 gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-4]
 gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-7]
          Length = 376

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + R    I    +  ++ T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT 165

Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D +      +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILTIMQAGKDDPEMGEIAAECQQEAYNLFLKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N+R   + L   +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQSNPLPWM 336


>gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITA--------K 158
             ++   +F E +HS ++ +II ++  D   +F+       + +    I+A         
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 159 ANWAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            N+ L  + T  ++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 NNYQLFGEGTHQIAGKTITVSLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFSEGSMIGLNRDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 337


>gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 380

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 53  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 110 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMT 169

Query: 174 -----FTTGTKD--------ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT          + +E  + L++  +     E + FY  FA   +      M
Sbjct: 170 NYYHMFGEGTHTFGGKQIVVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E +++   +  +A   E 
Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 290 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 341


>gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
 gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
          Length = 384

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           ++  +     +D  ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYYNLLGEGEHRVNGKTIVVSLRDLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E +     +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F   T+NP PW++
Sbjct: 292 KEWAEYLFKDGSMIGLNKDILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWIN 345


>gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
 gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
          Length = 380

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 53  WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L   +
Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 169

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G    D + ++         L++  V   V E + FY  FA   +      M
Sbjct: 170 KLYDLHGEGVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++   ++P +    +  Q+++  +   A   E 
Sbjct: 230 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A+     G  +GLN     QY++FI N R   IGL  +F+   NP PW++
Sbjct: 290 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 341


>gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 7169]
 gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
 gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis O35E]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G    D + ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 KLYDLHGEGVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++   ++P +    +  Q+++  +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A+     G  +GLN     QY++FI N R   IGL  +F+   NP PW++
Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337


>gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
 gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   S   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338


>gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1]
 gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1]
 gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small
          Length = 303

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 122/298 (40%), Gaps = 30/298 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ T++P+ DD    K    L++ E    +    F ++++ LV  N+  ++    +  
Sbjct: 22  NRWLETDLPLGDD---AKDVAALSEPELEFYRFLFAFLSAADDLVNVNLG-SLSELFTQK 77

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165
           +   Y + Q   E VHS  +  I   L L  G+     R V       +I  K  W    
Sbjct: 78  DILHYYIEQECIEVVHSRVYSAI--QLMLFRGDAAARERYVRAALRDEAIRRKVEW---- 131

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       ++ A+   + + ++  ++ EG++F + FA I  L   N  V   +   
Sbjct: 132 ----------LDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVVTCQSND 181

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           +I RDE++H +    + N    + P        Q    +  EA  +E  +     P+  +
Sbjct: 182 FISRDEAIHTSASCCIYNNYLGDAPRPDEARIHQ----LFAEAVEIECEFLRARAPRDSL 237

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
            L+ P+   Y+++ A+R    IG  PLF        +   ++  +K  NFFE R T Y
Sbjct: 238 LLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNFFERRSTNY 295


>gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
 gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D    Q  L++L        +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYTVDGKEYQVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E QQ++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A+     G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWANYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWIN 337


>gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
 gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   +   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVELQDECFKLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338


>gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
 gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L+V  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q    +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPMAYPEATSNPIPWIN 338


>gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 166 QYYNLLGEGMHNVGGKLVTVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++P +     E Q +   +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
 gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
          Length = 384

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   +   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345


>gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia
           pestis KIM 10]
 gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 391

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 64  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 120

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 121 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 180

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  +     +D  ++    L     + E + FY  FA   +      
Sbjct: 181 SYYHLLGEGTHQVNGKTVVVKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 239

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N +++  ++P +    +E QQ+   +   A   E
Sbjct: 240 MEGNAKIIKMIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQE 299

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 300 KEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWIN 352


>gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
 gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
          Length = 375

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +  +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSHTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 381

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   ++    L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 54  WRPEEIDVSQDRTDYQK---LPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 110

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 111 ETWIETWSFSETIHSRSYTHIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMT 170

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++S + T   +   ++    L     + E + FY  FA   +      
Sbjct: 171 SYYHLLGEGTHHINSETITVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 229

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     +IN ++   ++P +    KE Q     +  +A   E
Sbjct: 230 MEGNAKIIKLIARDEALHLTGTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQE 289

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 290 KEWATYLFRDGSMIGLNKDILCQYIEYITNIRMQAVGLALPFKIRSNPIPWIN 342


>gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
 gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
          Length = 375

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +  +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSXTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 46P47B1]
 gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 12P80B1]
 gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 101P30B1]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G    D + ++         L++  V   V E + FY  FA   +      M
Sbjct: 166 KLYDLHGEGIYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++   ++P +    +  Q+++  +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A+     G  +GLN     QY++FI N R   IGL  +F+   NP PW++
Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337


>gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS155]
 gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella baltica OS155]
          Length = 376

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   + +E+ S    I A  +  +Q T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 165

Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D  +  +      + L++  +     E + FY  FA   +      M
Sbjct: 166 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY++FI N+R   + L   +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYLEITNPLPWM 336


>gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q    +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338


>gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus 10329]
          Length = 377

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTT 165

Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E ++         L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVINGETVKISLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q    +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338


>gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 384

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   +   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345


>gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           arcticus 273-4]
 gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter arcticus 273-4]
          Length = 377

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEVDVSRDRMDY---GNLSSHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++    F E +HS ++ +II ++  D   +F+   +   I  +A    +Y        
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSS 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++    T   K   ++    L    V+ E + FY  FA   +      
Sbjct: 166 SLYNLYGAGTHTINGKQITVDLKSLKKQLYLCLMAVNVL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++I  ++P +    KE  ++S  +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F K   NP PW++
Sbjct: 285 KEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPKSKSNPIPWIN 338


>gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio
           salmonicida LFI1238]
 gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio
           salmonicida LFI1238]
          Length = 377

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRIDY---NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +I+ ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQAT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGTHTVNGEEIIVSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P       E +Q    +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A+     G  +GLN     QY+++I N R   +GL   +   T+NP PW++
Sbjct: 286 EWANYLFKDGSMIGLNKDILCQYVEYITNLRMKAVGLSGAYDGATQNPIPWIN 338


>gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
          Length = 384

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   +   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVELQDECFELFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345


>gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 5216-82]
          Length = 376

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T    +  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLCELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia floridanus]
 gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus
           Blochmannia floridanus]
          Length = 376

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDISKDRIDYQS---LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++      +F+       I  +A + ++ Y   +   
Sbjct: 106 ETWVETWSFFETIHSRSYTHIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLT 165

Query: 173 SF-------------TTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216
           ++             TT T +   E  + L++  +   V E + FY  FA   +      
Sbjct: 166 NYYYTLGIGKHRVNNTTITVNL-HELKKKLYLCLISVNVLEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWTKEF--QQKSRTMLHEATLLE 272
           M G A+  ++I RDESLHLN    ++N ++   ++P +       Q++S  +   A   E
Sbjct: 225 MEGNAKIIRFIARDESLHLNATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +AH     G  +GLN     QY+++I N R   IGL+  F    N  PW++
Sbjct: 285 KTWAHYLFKDGSMIGLNKEILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWIN 337


>gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
 gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
          Length = 394

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 26/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +Q D A ++    L D ++ +   NL +    +S+      +A   + S PE 
Sbjct: 65  WRPEEVSLQKDRADYQV---LNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPEL 121

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172
              +      E VHS ++ +II ++  D  ++F+   +   I ++A      Y + L + 
Sbjct: 122 EGAMNIWQTMEMVHSRSYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAA 181

Query: 173 SFTTGTKDADQEF---------LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANK 216
                 K  +            L DL            + EG+ FY  FA   + G    
Sbjct: 182 QEWGAGKQWEHALEGVDNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLEI 273
           + G A+    I RDES H+    +++N+ K  ++P +    KE ++    M  +    E 
Sbjct: 242 LEGSAKIIGLIARDESQHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEK 301

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPW 322
            +A      G  +GLN     +Y+++ ANRR   IGL+ +F    + NP PW
Sbjct: 302 LWAEYLFKDGSIIGLNDKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPW 353


>gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAQ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G+   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +   N  P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 286 AWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIPWIN 337


>gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAQ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G+   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +   N  P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 286 AWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIPWIN 337


>gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +F +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E +  Y  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRAYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported]
           - Buchnera sp. (strain APS)
 gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 24/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L D+E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++      +F+      +I  +A N ++ Y + ++  
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLT 165

Query: 173 SF----------TTGTK-DADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+            G K   +  FL+  L++  +   V E + FY  FA   +      M
Sbjct: 166 SYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +      EN      E ++++  +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A      G  +GLN     QY+++I N R H IG +  FK   NP PW+++
Sbjct: 286 KWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWIND 338


>gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 384

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEVDLSRDRMDYAK---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   AF E +HS ++ +II ++  D   +F+   +   I A+A       N  ++YT
Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYNDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +++   T   ++  ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYFNLLGEGKHLINNKEITISLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E   +   +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRNGTDDPEMAEIAAELHDECVALFKKAAAQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F K  +NP PW++
Sbjct: 292 KEWAAYLFKDGSMIGLNKDILGQYVEYITNLRMSAVGLPQAFPKALQNPIPWIN 345


>gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           bovienii SS-2004]
 gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164
             ++   +F E +HS ++ +II ++  D   +F+       + +    I+   +  ++  
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVANEQILKRAKDISGYYDVLIEMT 165

Query: 165 -YTQTLSSPSFTTGTKD------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
            Y   L   ++    K+      A ++ L    +     E + FY  FA   +      M
Sbjct: 166 NYYHQLGEGTYNVAGKNITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIARECEQQCYDLFVQAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 337


>gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  S T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGTHQVNGQSVTVSLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYVEYITNIRMQAVGLGAPFKTRSNPIPWIN 337


>gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
          Length = 139

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEA 268
           ++    KM  +    + ++ DESLHL  GI+ I  I  ENP +    +F +  R  + +A
Sbjct: 2   AMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIIDA 61

Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             LE+ Y         + G++    E YM++IA+RR  ++G +P F   +NP  ++ +  
Sbjct: 62  VELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE- 120

Query: 328 DLKKEKNFFETRVTEY 343
           D+KK  NFFE   TEY
Sbjct: 121 DVKKLTNFFEVSSTEY 136


>gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 376

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164
             ++   +F E +HS ++ +II ++  D   +F+       + +    I+A  +  ++  
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
            Y   L   S     K      +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 337


>gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae
           ATCC 23330]
          Length = 384

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 39/300 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L D E+ +   NL +    +S+   +  +     +S PE 
Sbjct: 56  WRPEEVDLSRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   AF E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q          T++    T   ++  ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYFNLLGEGKHTVNGKEITISLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLN----------FGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
           M G A+  + I RDE+LHL            G+D ++  +I        E Q +   +  
Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDLDMAEI------AAELQDECFELFK 285

Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
           +A   E  +A      G  +GLN     QY+++I N R   +GL+  F + T+NP PW++
Sbjct: 286 KAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLQAAFPQATQNPIPWIN 345


>gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3]
 gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3]
 gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3]
 gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
          Length = 306

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 35/300 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+ ++  ++DD   ++  + LT+DE +  +    F ++++ LV  N+  ++ +  S 
Sbjct: 27  SNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVNLG-SLTQLFSQ 82

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166
            +   Y + Q   E VH+  +  I   L   +  L   Y  V    PSI  K  W  +  
Sbjct: 83  KDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEE-- 140

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY-Q 225
                       K  D   + + ++  ++ EG++F + FA I  L R N +  +  Q+  
Sbjct: 141 ------------KVRDNPSVAEKYILMILIEGIFFVSSFAAIAYL-RNNGLFVVTCQFND 187

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H +    + N    E P +       +   +  EA  +E A+     PK  +
Sbjct: 188 LISRDEAIHTSASCCIYNNYVPEKPAI------TRIHQLFSEAVEIECAFLKSHAPKTRL 241

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNFFETRVTEY 343
            +N  +  QY++F A+R    I +  LF     ++ FP    + D  K  NFFE   T Y
Sbjct: 242 -VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFMIAD--KNTNFFERHSTSY 298


>gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
 gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
          Length = 376

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYGLYGEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337


>gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 359

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 24/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L D+E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 32  WRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++      +F+      +I  +A N ++ Y + ++  
Sbjct: 89  ETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLT 148

Query: 173 SF----------TTGTK-DADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+            G K   +  FL+  L++  +   V E + FY  FA   +      M
Sbjct: 149 SYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELM 208

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +      EN      E ++++  +   A   E 
Sbjct: 209 EGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEK 268

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A      G  +GLN     QY+++I N R H IG +  FK   NP PW+++
Sbjct: 269 KWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWIND 321


>gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
 gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
          Length = 376

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                ++ GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYGLYSEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +      L      +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337


>gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 377

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSHDRIDFQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++     ++F+                  Y ++   T
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILKRAGSISHFYDDLIEAT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           A  N   + T  ++    T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 ALYNLHGEGTHRVAGRDVTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E +Q    +  EA + E
Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMRSGQDDPEMAEIAAECEQACFELFKEAAIQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R + +GL+P F    +NP PW++
Sbjct: 285 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGAKQNPIPWIN 338


>gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
 gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
          Length = 376

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYGLYGEGTYTVDGKKCVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337


>gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri
           ES114]
 gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
 gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Vibrio fischeri ES114]
 gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
          Length = 377

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSGDRIDY---NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  +   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQAT 165

Query: 174 -----FTTGT--------KDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT          + +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGTHVLNGQEITISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDESLHL     ++N ++   ++P       E +Q+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDESLHLTSTQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A+     G  +GLN     QY+++I N R   +GL   ++  T+NP PW++
Sbjct: 286 QWANYLFKDGSMIGLNKDILCQYVEYITNLRMKAVGLNSAYEGATQNPIPWIN 338


>gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4]
 gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4]
          Length = 320

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 30/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ T++P+ DDL   K    L   ER   +    F ++++ LV  N+  + A++   +
Sbjct: 39  NRWLDTDLPISDDL---KDVAKLAPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 92

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
             +   Y + Q   E  HS  +  I   L L   +     R V S+       L+ +   
Sbjct: 93  QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDATARARYVASVVKDVAIDLKVSWL- 149

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    K  + + + + ++  ++ EG++F + FA I  L   N  V   +    I R
Sbjct: 150 -------QAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISR 202

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFV 285
           DE++H N    + N         +   F++ + T ++    EA  +E  +     PK   
Sbjct: 203 DEAIHTNASCCIYNN--------YLGGFEKPAPTRIYALFSEAVNIECEFLLSHAPKSTH 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R T Y 
Sbjct: 255 LLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERRSTAYS 313


>gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus CMCP6]
 gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus YJ016]
 gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Vibrio vulnificus MO6-24/O]
 gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus CMCP6]
 gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016]
 gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 377

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G         K +  E  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGEHVVNGETIKVSLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   +   T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWIN 338


>gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 376

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 126/304 (41%), Gaps = 40/304 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    L++ E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             +    +F E +HS ++ +I+ +L  D   +F    E   I  +A       +  + YT
Sbjct: 106 ETWTETWSFFETIHSRSYTHILRNLFGDPSSIFADIVENEQIKKRAADISKYYDDLIFYT 165

Query: 167 QTLSSPSFTTGTKDADQEFLQ------DLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217
           Q   +    T   + ++  +        LF+        E + FY  FA   +      M
Sbjct: 166 QLWQTLGEGTHNINGEEHVVTMRSLKVKLFLCMNSVNALEAIRFYVSFACTFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265
            G ++  + I RDE+LHL     ++N        LW K            E++Q++  + 
Sbjct: 226 EGNSKIIRLISRDENLHLTSTQHILN--------LWAKGKDDPEMAEIAIEYKQQATDIF 277

Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A   E  +A      G  +GLN     QY++FIAN R   IGL   F    NP PWM+
Sbjct: 278 LDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLGQPFDIKNNPLPWMN 337

Query: 325 EVID 328
             ++
Sbjct: 338 NYLN 341


>gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae Rd KW20]
 gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 86-028NP]
 gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus
           influenzae F3047]
 gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB)
           [Haemophilus influenzae Rd KW20]
 gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae 86-028NP]
 gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.4-21]
 gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus influenzae 10810]
 gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2866]
 gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2846]
 gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3047]
 gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 376

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYGLYGEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337


>gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
 gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
          Length = 405

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 78  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 134

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y        
Sbjct: 135 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 194

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 195 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 253

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E
Sbjct: 254 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 313

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 314 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 366


>gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 320

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 30/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ T++P+ DDL   K    L   ER   +    F ++++ LV  N+  + A++   +
Sbjct: 39  NRWLDTDLPISDDL---KDVAKLAPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 92

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
             +   Y + Q   E  HS  +  I   L L   +     R V S+       L+ +   
Sbjct: 93  QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDATARARYVASVVKDVAIDLKVSWL- 149

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    K  + + + + ++  ++ EG++F + FA I  L   N  V   +    I R
Sbjct: 150 -------QAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISR 202

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFV 285
           DE++H N    + N         +   F++ + T ++    EA  +E  +     PK   
Sbjct: 203 DEAIHTNASCCIYNN--------YLGGFEKPAPTRIYALFSEAVNIECEFLLSHAPKSSH 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R T Y 
Sbjct: 255 LLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERRSTAYS 313


>gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 396

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 69  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 125

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y        
Sbjct: 126 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 185

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 186 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 244

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E
Sbjct: 245 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 304

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 305 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 357


>gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 400

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 28/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 73  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 129

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 130 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMT 189

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215
           +  +   + T  ++  +     ++  ++    L V  V   E + FY  FA   +     
Sbjct: 190 SYYHLLGEGTHQVNGKTVVVNLRELKKQLY--LCVMSVNALEAIRFYVSFACSFAFAERE 247

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLL 271
            M G A+  + I RDE+LHL     +IN ++   ++P +    +E QQ+   +   A   
Sbjct: 248 LMEGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQ 307

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           E  +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 308 EKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 361


>gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
 gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
          Length = 384

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 56  WRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWSFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L         K    +++E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYFNLLGVGEHRVNGKTIVVSERELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWTK---EFQQKSRTMLHEATLLE 272
            G A+  + I RDE+LHL     ++N ++   E    W +   E Q +   +  +A   E
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRGGAEGAE-WAEIAAELQNECFELFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+P F K T+NP PW++
Sbjct: 292 KEWAEYLFKDGSMIGLNKDILCQYVEYITNARMLAVGLQPAFEKATQNPIPWIN 345


>gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 376

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y        
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
 gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++      +F+       I+ +A+    Y   L +  
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTTYYDDLINSV 165

Query: 174 -----FTTGTKDADQE-FLQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217
                +  G  D + E  + +LF      Y+      + E + FY  FA   +      M
Sbjct: 166 SLYNLYGEGKHDINGETVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     + ++++  M  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCREEAIKMFVDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IGL   F    NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFDNNSNPIPWIN 337


>gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
 gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
          Length = 381

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 53  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 169

Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                F  G    + E     ++DL        +     E + FY  FA   +      M
Sbjct: 170 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+S  +  +A   E 
Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +     NP PW++
Sbjct: 290 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 342


>gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 377

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 165

Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                F  G    + E     ++DL        +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGQHQINGETVNISMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+S  +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +     NP PW++
Sbjct: 286 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 338


>gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
          Length = 377

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 165

Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                F  G    + E     ++DL        +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+S  +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +     NP PW++
Sbjct: 286 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 338


>gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
 gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
          Length = 381

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 53  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 169

Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                F  G    + E     ++DL        +     E + FY  FA   +      M
Sbjct: 170 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+S  +  +A   E 
Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +     NP PW++
Sbjct: 290 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 342


>gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           ANA-3]
 gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. ANA-3]
          Length = 391

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 64  WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 120

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + R    I    +  ++ T
Sbjct: 121 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT 180

Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D +      +   + L++  +     E + FY  FA   +      M
Sbjct: 181 QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 240

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 241 EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEK 300

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N+R   + L   +    NP PWM
Sbjct: 301 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAELSNPLPWM 351


>gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 376

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVAQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   +        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYNLFGEGTYKVEGKECKVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           A+A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 AWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
 gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
          Length = 381

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 27/298 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W  TE+ ++ D   W +   L  D + +   NL +   ++S ++     AI   +S PE 
Sbjct: 47  WTETEISLEADKKQWPN---LPRDIQEITLLNLAWQTQTDSFISRAPEAAIMPLVSRPEL 103

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL---------- 163
              L + ++ E +HS  +  II ++  D  E  +   +     A+   ++          
Sbjct: 104 EGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELFDELYLLG 163

Query: 164 QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           QY           T     F    ++   + L   F  Y + E M FY  FA   +L   
Sbjct: 164 QYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFACTFALAEN 222

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           + + GIA+  Q I +DE+LH      +I  +  +       E   K+ T L +    EI 
Sbjct: 223 DILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEALAKAPTQLLKTLKTEIE 282

Query: 275 YAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWMSEVID 328
           + H     +  +GLNA   E+Y+ F+       IG+E    L   T+NP PW+   +D
Sbjct: 283 WGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVITKNPIPWIMNWLD 340


>gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 420

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 93  WRPEEVDVSRDRIDFQA---LPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 149

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 209

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 210 SYWHLLGEGTHNVNGKTVTVNLRTLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 268

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQE 328

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 329 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381


>gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 376

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 30/295 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDS 165

Query: 174 -----FTTGTKDADQEFLQDLFV--------FYV------VFEGMWFYTGFAQILSLGRA 214
                +  GT + D    QD  V         Y+        E + FY  FA   +    
Sbjct: 166 QLYTLYGEGTYNVDG---QDCVVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAER 222

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATL 270
             M G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A  
Sbjct: 223 KLMEGNAKIIKFIARDEALHLTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAE 282

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            E  +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 283 QEKEWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae
           Ech1591]
 gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591]
          Length = 376

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++   GL + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  + T    +  ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGTHQVNGKTVTINLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337


>gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 377

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQ----T 168
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A + A  Y      T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEEILKRAKDIAFYYDDLIKLT 165

Query: 169 LSSPSFTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G  + + E          + L+V  +     E + FY  FA   +      M
Sbjct: 166 ADYHRYGEGNHNINGEDVKISLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFEFMQIAEECKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWIN 338


>gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 380

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 29/296 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +K  L D ER +   NL +    +S+   +  + +    S PE 
Sbjct: 49  WRPEEVDISQDRIDYMTK--LADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPEL 106

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   AF E +HS ++ +II  +  D  E+F+       +     S++A+ +   Q  
Sbjct: 107 ETWIETWAFSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMV 166

Query: 167 -----------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
                      + L +  F        ++  + L V     E + FY  FA   + G   
Sbjct: 167 CAREHLGEDEFERLYASEFDGKPYPMQRQLFRTL-VSVNALEAIRFYVSFACTFAFGERK 225

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA- 274
            + G A+  + I RDE+LH      ++  ++     L  K+  ++    +++ T+L++A 
Sbjct: 226 LLEGNAKIMRLIARDEALHCEGTERMLRNMRNGREGLLWKQIAEEEEPFVYQ-TMLDVAE 284

Query: 275 ----YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
               +A      G  +GLNA   +QY+++  N    ++ L PLF   T +P PWM+
Sbjct: 285 QEMRWADYLFKDGSMIGLNAKILKQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMN 340


>gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
 gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
          Length = 377

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165

Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  G         K +  +  + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATSNPIPWIN 338


>gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
          Length = 375

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 26/291 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV +  D   +++   L + E+ +   NL +    ES+   +  +A+   +S PE   
Sbjct: 50  PEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELET 106

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAK 158
           ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T+ 
Sbjct: 107 WVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSY 166

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
            +   + T T++  + T   ++  ++    L     + E + FY  FA   +      M 
Sbjct: 167 WHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELME 225

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIA 274
           G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E  
Sbjct: 226 GNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKD 285

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 286 WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586]
 gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586]
          Length = 376

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGFYDELIELT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++S + T    +  ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGTHQINSKTVTVNLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQIAEECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337


>gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 66  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E + FY  FA   +      
Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E + +   +  +A   E
Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQE 301

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354


>gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 420

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 93  WRPEEVDVSRDRIDFQA---LPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 149

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 209

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 210 SYWHLLGEGTHNVNGRTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 268

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQE 328

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 329 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381


>gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2]
 gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2]
 gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid
           herpesvirus 2]
 gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2]
 gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2]
 gi|194346388|gb|ACF49570.1| UL40 [synthetic construct]
 gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2]
 gi|237626230|gb|ACR02753.1| UL40 [synthetic construct]
 gi|237626404|gb|ACR02926.1| UL40 [synthetic construct]
          Length = 343

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 31/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W  TE  + DDL   +  + LT++ER   +    F ++++ LV  NI  +L ++   S
Sbjct: 63  NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
             +   Y   Q   EAVHS  +  I   L     L   E        P+I +K +W  + 
Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDWLNKR 176

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               SS              + + ++  ++ EG++F   FA I  L   N  V   +   
Sbjct: 177 VIECSS--------------IAEKYILMILIEGIFFSASFAAIAYLRINNLFVVTCQINN 222

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H+     +      +N  +  K    + + +  EA  +E A+     P+   
Sbjct: 223 LISRDEAIHVEASCCIF-----KNYLMGPKPSIGRVQELFKEAVQIECAFLRTAAPRNSQ 277

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            L+  +   Y+++ A+R   ++ + P++   +    +   ++      NFFE R T Y 
Sbjct: 278 LLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNFFERRNTAYS 336


>gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2001_A]
 gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2004_A]
          Length = 450

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   ++S +  T D  +MIK  L +   ++SL + +IV      ++N + 
Sbjct: 52  WSEDEIRLHQDRMDFESVDQSTYD--VMIK-TLSWQYEADSLASRSIVTLFAPFITNSDL 108

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170
            Q +LR +  EA+HS T+  II     +  ++F      ++V   + K   A    +TL 
Sbjct: 109 SQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTERSYKIAEAFSKLKTLG 168

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +  +T   +   ++ ++++ +  +V     E M F   FA   +L      +G+A   Q 
Sbjct: 169 A-RYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALAEREIFLGVASLVQK 227

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG 283
           IM DE++H      +IN +      +W K F+      + ++      E++++     +G
Sbjct: 228 IMIDETIHTRMDEAIINILL--GDEVWLKTFEDIKPDIKEIVDSVYKQELSWSEYIFSEG 285

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
              VGLN    ++++Q+ +     ++G+E P      NP PWM   +D+
Sbjct: 286 RSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLDI 334


>gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
          Length = 377

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQ----T 168
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A + A  Y      T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEEILKRAKDIAFYYDDLIKLT 165

Query: 169 LSSPSFTTGTKDADQE----FLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G  + + E     L DL        +     E + FY  FA   +      M
Sbjct: 166 ADYHRYGEGNHNINGEDVKISLHDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFAFMQIAEECKQECFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWIN 338


>gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_D]
 gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_C]
 gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_B]
 gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_A]
 gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2005_A]
          Length = 450

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   ++S +  T D  +MIK  L +   ++SL + +IV      ++N + 
Sbjct: 52  WSEDEIRLHQDRMDFESVDQSTYD--VMIK-TLSWQYEADSLASRSIVTLFAPFITNSDL 108

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170
            Q +LR +  EA+HS T+  II     +  ++F      ++V   + K   A    +TL 
Sbjct: 109 SQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTERSYKIAEAFSKLKTLG 168

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +  +T   +   ++ ++++ +  +V     E M F   FA   +L      +G+A   Q 
Sbjct: 169 A-RYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALAEREIFLGVASLVQK 227

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG 283
           IM DE++H      +IN +      +W K F+      + ++      E++++     +G
Sbjct: 228 IMIDETIHTRMDEAIINILL--GDEVWLKTFEDIKPDIKEIVDSVYKQELSWSEYIFSEG 285

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
              VGLN    ++++Q+ +     ++G+E P      NP PWM   +D+
Sbjct: 286 RSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLDI 334


>gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
 gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
          Length = 360

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV + +D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---S 170
             ++   +F E +HS ++ +II ++  +   +F+       I  +AN    Y   L   +
Sbjct: 89  ETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIKRANDIAGYYDDLIQAT 148

Query: 171 SPSFTTGTKD----------ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S     G  +          + +E  + L++  +     E + FY  FA   +      M
Sbjct: 149 SDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 208

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    KE +Q    +   A   E 
Sbjct: 209 EGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKECEQVCFDLFKNAAEQEK 268

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+P ++   +NP PW++
Sbjct: 269 EWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGANQNPIPWIN 321


>gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           cryohalolentis K5]
 gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter cryohalolentis K5]
          Length = 377

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEVDVSKDRMDF---GNLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++    F E +HS ++ +II ++  D   +F+   +   I  +A    +Y        
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSS 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T T++    T   K   ++    L    V+ E + FY  FA   +      
Sbjct: 166 SLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++I  ++P +    KE  ++S  +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F  ++ NP PW++
Sbjct: 285 KEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWIN 338


>gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
 gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
          Length = 375

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E +  Y  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336


>gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus
           hirsutus]
          Length = 249

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 26/233 (11%)

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V +N+V    + +  PE R +   Q     +HS  +  +I SL  D  E   +FN    
Sbjct: 1   IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL-FVFYVVFEGMWFYTGFAQILS 210
           VP +  K +W L+              + AD      L  V +   EG++F  G A I  
Sbjct: 61  VPCVKKKKDWVLR--------------RIADDRVTFPLKVVAFATVEGIFFAGGAAAIFW 106

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     M G+    + I + ESL+ +F   +  ++ ++ P +      ++   ++ EA +
Sbjct: 107 LQEKGVMPGLTLSNELIRKGESLYTDFACLLFKRL-VQRPSV------EEITEIIREAVI 159

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           +E  ++ + +P   +G++      Y++F+A+R    +    +F    NPF +M
Sbjct: 160 IEQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFG-VPNPFGFM 211


>gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 129PT]
 gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 2336]
 gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Haemophilus somnus 129PT]
 gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336]
          Length = 376

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYGLYGEGTYTVDGKACKVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
 gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
          Length = 323

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W   + LTD+ERL+  R        +++      +++     
Sbjct: 31  VNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF E+VH+ ++  I ++L              P I     W+ +     
Sbjct: 88  TPHEEAVLTNIAFMESVHAKSYSSIFSTLA-----------STPEIDEAFRWSRENRNLQ 136

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +         D    + +   +   + E   FY+GF   + L    ++   A+  + I+R
Sbjct: 137 AKAGLIVERYDGQDPYKKK--IASTLLESFLFYSGFYWPMYLSAHARLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  IE  P    +E +  +  +L E    E+ Y H+      VGL 
Sbjct: 195 DEAVH-GYYIGYKYQRSIETLPEEKREELKAFTFELLFELYENEVEYTHDLYDA--VGL- 250

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345
           A   ++++ + AN+    +G EP+F   T N  P +   +    ++N  FF    + Y  
Sbjct: 251 AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSALSPNSDENHDFFSGSGSSYVI 310

Query: 346 G 346
           G
Sbjct: 311 G 311


>gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio cholerae LMA3894-4]
          Length = 377

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 165

Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E +               +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++            +E +Q+S  +  EA   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +   T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 338


>gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           oneidensis MR-1]
 gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           oneidensis MR-1]
          Length = 376

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + R    I    +  ++ T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNHEILRRATDIAEFYDHLIKLT 165

Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q        T   D +      +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QIYHLLGEGTHVIDGEPVEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  I Q   ++P +     E QQ++  +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMGEIAIECQQEAYNLFLKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N+R   + L   +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQTNPLPWM 336


>gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 376

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   AF E +HS ++ +II ++  D   +F+       I A+A    +Y        
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMT 165

Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                    T  ++  + T   + A ++ L    +     E + FY  FA   +      
Sbjct: 166 NYWHLLGEGTHQVAGKTVTVDLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++        KE   + R     +  +A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           MJ-1236]
 gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae MJ-1236]
          Length = 381

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 53  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 169

Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E +               +     E + FY  FA   +      M
Sbjct: 170 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++            +E +Q+S  +  EA   E 
Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +   T NP PW++
Sbjct: 290 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 342


>gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
          Length = 375

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 48  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS +F +II ++  D   +F+                  Y E+  +T
Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T T++  + T   ++  ++    L     + E +  Y  FA   +      
Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAEREL 223

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RD +LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 224 MEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336


>gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O395]
 gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
 gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
          Length = 389

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 61  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 117

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 118 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 177

Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E +               +     E + FY  FA   +      M
Sbjct: 178 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 237

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++            +E +Q+S  +  EA   E 
Sbjct: 238 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 297

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +   T NP PW++
Sbjct: 298 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 350


>gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 359

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   AF E +HS ++ +II ++      +F+       I+ +A+   +Y   L +S 
Sbjct: 89  ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 148

Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217
           S      +   E      + +LF      Y+      + E + FY  FA   +      M
Sbjct: 149 SLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 208

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     Q +     M  +A   E 
Sbjct: 209 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 268

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IG    FK   NP PW++
Sbjct: 269 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNNSNPIPWIN 320


>gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 336

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 137/322 (42%), Gaps = 18/322 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    +   +  N++W+ TE     D+  +K     T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E  V       IY  +   E     +  A  E  H   + +++  LG+  G+ F  
Sbjct: 75  IAQIEVQV-KTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGI-TGD-FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             EVP++  +  +               G  D  + ++  + +F +  E +  ++ F  +
Sbjct: 132 VTEVPAVKDRIEYL--------DECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIM 183

Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            S  +   K  GIA   +   ++E +H  FG+++++ I+ ENP L+  EF+ + R     
Sbjct: 184 TSFDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRR 243

Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +  L      ++++   N+    +G+ P+F+  ++      W 
Sbjct: 244 AYEAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345
            E I + K+ +FF  R T Y +
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNK 325


>gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           enterocolitica W22703]
          Length = 376

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 337


>gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
          Length = 323

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W   + LTD+ERL+  R        +++      +++     
Sbjct: 31  VNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF E+VH+ ++  I ++L              P I     W+ +     
Sbjct: 88  TPHEEAVLTNIAFMESVHAKSYSSIFSTLA-----------STPEIDEAFRWSRENRNLQ 136

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +         D    + +   +   + E   FY+GF   + L    ++   A+  + I+R
Sbjct: 137 AKARLIVERYDGQDPYKKK--IASTLLESFLFYSGFYWPMYLSAHARLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  IE  P    +E +  +  +L E    E+ Y H+      VGL 
Sbjct: 195 DEAVH-GYYIGYKYQRSIETLPEEKREELKAFTFELLFELYENEVEYTHDLYDA--VGL- 250

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345
           A   ++++ + AN+    +G EP+F   T N  P +   +    ++N  FF    + Y  
Sbjct: 251 AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSALSPNSDENHDFFSGSGSSYVI 310

Query: 346 G 346
           G
Sbjct: 311 G 311


>gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis MC58]
 gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria
           meningitidis H44/76]
 gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M13399]
 gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis CU385]
 gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240013]
 gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis H44/76]
 gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240355]
 gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M04-240196]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form
           gamma [Homo sapiens]
          Length = 139

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 9/119 (7%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DE LH +F   +         +L  K  +++ R ++ +A  +E  +  E +P G +G+N
Sbjct: 14  QDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMN 66

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 67  CILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 123


>gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 376

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   AF E +HS ++ +II ++      +F+       I+ +A+   +Y   L +S 
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 165

Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217
           S      +   E      + +LF      Y+      + E + FY  FA   +      M
Sbjct: 166 SLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     Q +     M  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IG    FK   NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNNSNPIPWIN 337


>gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis MC58]
 gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha153]
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 376

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWIN 337


>gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis Z2491]
 gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis Z2491]
 gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 166 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDF---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++   +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L    
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLT 165

Query: 170 ------SSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                        G ++ +       + L++  +     E + FY  FA   +      M
Sbjct: 166 NDYHRYGEGKHVIGGEEVNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++            +E +Q+   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  + + T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338


>gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
 gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis FAM18]
 gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis FAM18]
 gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis N1568]
 gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis OX99.30304]
 gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M6190]
 gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M0579]
 gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis ES14902]
 gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis 961-5945]
 gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis G2136]
 gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240149]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 166 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338


>gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis alpha710]
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis 053442]
 gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis 053442]
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L       G K      +   + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 376

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   AF E +HS ++ +II ++      +F+       I+ +A+   +Y   L +S 
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 165

Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217
           S      +   E      + +LF      Y+      + E + FY  FA   +      M
Sbjct: 166 SLYNLYGEGKHEINGKTVIINLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     Q +     M  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IGL   F+   NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENNSNPIPWIN 337


>gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           amazonensis SB2B]
 gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella amazonensis SB2B]
          Length = 391

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D ER +   NL +    +S+   +  +A    +S PE 
Sbjct: 64  WRPEEVDVSRDKIDF---GKLPDHERHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 120

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + +    I+A  +  ++ T
Sbjct: 121 ETWIETWSFSETIHSRSYTHIIRNIVNDPSSVFDDIVVNEEILKRAGDISAYYDELIKLT 180

Query: 167 QTLSSPSFTTGTKD---------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           Q        T T D         A ++ L    +     E + FY  FA   +      M
Sbjct: 181 QIYHLHGEGTHTVDGHVVDVTVRALKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 240

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF----QQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    ++N ++         E     QQ++  +   A   E 
Sbjct: 241 EGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDAEMAEIAIECQQEAYDLFLRAAEQEK 300

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N+R   + L   +  + NP PWM
Sbjct: 301 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYPESTNPLPWM 351


>gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
 gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter
           turicensis z3032]
          Length = 376

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 286 EWAEYLFQGGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWIN 337


>gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 395

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 144/374 (38%), Gaps = 67/374 (17%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y   + K+     +HW+P EVPM DD+  W   N L D+++  +     FF   +  
Sbjct: 12  PFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDW--NNRLDDNQKKFLTNIFRFFTQGDVD 69

Query: 96  VANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
           VA         +    PE   ++   A  EAVH   + ++I +LG+ E   +  + E   
Sbjct: 70  VAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPEST-YREFLEYHE 128

Query: 155 ITAKANWALQYTQ----TLSSPSFTTGTKDADQEFL--------QDLFVFY--------- 193
           +  K ++  ++      +L   SF T         +         D+ V++         
Sbjct: 129 MKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLLPAVML 188

Query: 194 ---------------------VVFEG----MWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                                 +F G    M  ++ F  +LS      M G+ +   + +
Sbjct: 189 ASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQIVSWSI 248

Query: 229 RDESLHLNFGIDVINQIKIEN---------------PHLWTKEFQQKSRTMLH-EATLLE 272
            DE+ H +  I +      EN               P +     ++ +  M+  E   + 
Sbjct: 249 VDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLEDEFIN 308

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLKK 331
           +AY      + F+ ++    +QY++FIAN+R   +  + P  + ++NP P    +I+   
Sbjct: 309 LAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIMINAPI 368

Query: 332 EKNFFETRVTEYQQ 345
             NFFE R T+Y +
Sbjct: 369 NTNFFENRSTDYAR 382


>gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 343

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 31/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W  TE  + DDL   +  + LT++ER   +    F ++++ LV  NI  +L ++   S
Sbjct: 63  NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
             +   Y   Q   EAVHS  +  I   L     L   E        P+I +K +W  + 
Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDWLNKR 176

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               SS              + + ++  ++ EG++F   FA I  L   N  V   +   
Sbjct: 177 VIECSS--------------IAEKYILMILIEGIFFSASFAAIAYLRINNLFVVTCQINN 222

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H+     +      +N  +  K    + + +  EA  +E A+     P    
Sbjct: 223 LISRDEAIHVEASCCIF-----KNYLMGPKPSIGRVQELFKEAVQIECAFLRTAAPHNSQ 277

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            L+  +   Y+++ A+R   ++ + P++   +    +   ++      NFFE R T Y 
Sbjct: 278 LLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNFFERRNTAYS 336


>gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha275]
          Length = 345

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   E   ITA+A       +  ++YT
Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172

Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           Q           +     T   +   ++    L    V+ E + FY  FA   +      
Sbjct: 173 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++  +++  +     E Q +   +  +A   E
Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   +NP PW++
Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis
           glossinidius str. 'morsitans']
 gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDGLIELT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+S  +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTSTQHMLNLMRSGEDDPEMAEIARECQQESYDLFLLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F    NP PW++
Sbjct: 286 EWASYLFRDGSMIGLNKDILCQYVEYITNIRMQSVGLDLPFATRSNPIPWIN 337


>gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYTVDGKECVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 DWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMRSGEDDPEMAAIAEECKQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  FK   NP PW++
Sbjct: 286 EWAEYLFQGGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWIN 337


>gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYTVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 DWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           loihica PV-4]
 gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella loihica PV-4]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 41/344 (11%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61
           NN  L P+  G+  VNV       AR D+      KY   +EK +    +  W P EV +
Sbjct: 11  NNALLEPMFLGQS-VNV-------ARYDIQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +
Sbjct: 57  SKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY---------------- 165
           F E +HS ++ +II ++  D   +F+   +   I  +A+    Y                
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGE 173

Query: 166 -TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            T  ++  +    T+ A ++ L    +   V E + FY  FA   +      M G A+  
Sbjct: 174 GTHEINGKTVEVTTR-AIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHLN    ++   Q   ++P +    KE +Q +  +  +A   E  +A    
Sbjct: 233 RLIARDEALHLNSTQHILKLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
             G  +GLN     QY+++I N R   + L   +    NP PWM
Sbjct: 293 KDGSMIGLNEQILCQYVEYITNERMKSVNLVSPYADQSNPLPWM 336


>gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 384

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +     +S PE 
Sbjct: 56  WRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   AF E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYILARAEDIACYYDDLIEYT 172

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   + T   K  +    E  + L++  +   V E + FY  FA   +      M
Sbjct: 173 QYFNLLGEGTHTVNGKIVEVSLHELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-W---TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  +    W    ++ QQ+   +  +A   E 
Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRGGSEGTEWAQIAQDLQQECFDLFVKAAEQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F K T+NP PW++
Sbjct: 293 EWASYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLPVAFPKSTQNPIPWIN 345


>gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337


>gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
 gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 89  ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 148

Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E +               +     E + FY  FA   +      M
Sbjct: 149 NDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 208

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++            +E +Q+S  +  EA   E 
Sbjct: 209 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 268

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +   T NP PW++
Sbjct: 269 EWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTATTNPIPWIN 321


>gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5]
 gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria
           phage T5]
          Length = 381

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 27/305 (8%)

Query: 47  LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYR 106
           L A +  W  TE+ ++ D   W +   L  + + +   NL +   ++S ++     AI  
Sbjct: 40  LLARSQFWTETEISLEADKKQWPN---LPREIQEITLLNLAWQTQTDSFISRAPEAAIMP 96

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--- 163
            +S PE    L + ++ E +HS  +  II ++  D  E  +   +     A+   ++   
Sbjct: 97  LVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELF 156

Query: 164 -------QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  QY           T     F    ++   + L   F  Y + E M FY  FA 
Sbjct: 157 DELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFAC 215

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
             +L   + + GIA+  Q I +DE+LH      +I  +  +       E   K+   L +
Sbjct: 216 TFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAVAKAPAQLLK 275

Query: 268 ATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWM 323
               EI + H     +  +GLNA   E+Y+ F+       IG+E    L   T+NP PW+
Sbjct: 276 TLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVITKNPIPWI 335

Query: 324 SEVID 328
              +D
Sbjct: 336 MNWLD 340


>gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + ++ Y   + S 
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILKRARDISVYYDDLIEST 165

Query: 173 SF----TTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
            +      GT   + +     L+DL        +     E + FY  FA   +      M
Sbjct: 166 GYYHLLGEGTHQVNGKTVIVNLRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E + +   +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECETQCYDLFVQAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 DWASYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWIN 337


>gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT + D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGTYNVDGQECTVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWASYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
 gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y   L   +
Sbjct: 89  ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQLT 148

Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    + E +               +     E + FY  FA   +      M
Sbjct: 149 NDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 208

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++            +E +Q+S  +  EA   E 
Sbjct: 209 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 268

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GLEP +   T NP PW++
Sbjct: 269 EWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTATTNPIPWIN 321


>gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164
             ++   +F E +HS ++ +II ++  D   +F+       + +    I+A  +  ++  
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
            Y   L   S     K      +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E Q +   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQSQCYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRSNPIPWIN 337


>gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus parainfluenzae T3T1]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYTVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFGARSNPIPWIN 337


>gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
 gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAKANWALQ-- 164
             ++   +F E +HS ++ +II ++  D   +F       N+ R    I+   +  ++  
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMT 165

Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
            Y   L   +     K  +    E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 GYYHLLGEGTHQVNGKTVNVSLYELKKKLYMCLMSVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +    ++P +    KE +++S  +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +G+   F+   NP PW++
Sbjct: 286 EWADYLFRDGSMIGLNRDILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWIN 337


>gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella
           tarda FL6-60]
          Length = 376

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   + S 
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIEST 165

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
            +      GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 GYYHLLGEGTHQINGKPVSVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E + +   +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAGYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWIN 337


>gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   + + +        + L+V  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQGVGLSLPFQTRTNPIPWIN 337


>gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYAVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFGARSNPIPWIN 337


>gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 377

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   +   I  +A+    Y   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMDNEHILQRASDIAHYYDELYQNS 165

Query: 174 -----FTTGT-------KDAD-QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT       K  D ++  + L++  V   V E + FY  FA   +      M
Sbjct: 166 QLYSLFGPGTHMVNGEQKHVDLRKLKKQLYLCLVAVNVLEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN +    ++P +    ++ +++S  +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMINILASGKDDPEMAEIAEDCREESIEIFRKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL  +F  ++ NP PW++
Sbjct: 286 EWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPSIFPDSKSNPIPWIN 338


>gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   ++S   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDISKDRIDFQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++      +F+       I  +A     Y   L   +
Sbjct: 106 EIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   G    +         E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 SYYHILGPGIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    ++N ++   ++P +   + E QQ+S  +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A+     G  +GLN     QY+++I N R   IGL   F    N  PW++
Sbjct: 286 NWANYLFKDGSMIGLNKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWIN 337


>gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVIVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFATRTNPIPWIN 337


>gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae L20]
 gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    D    Q  L++L        +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL    +++N I    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     +Y+++I N R   +GL   F  + NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFAASSNPIPWIN 337


>gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y  +  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              +   + T  ++  S T       ++    L     + E + FY  FA   +      
Sbjct: 166 GYYHLLGEGTHQVNGKSVTVDLHSLKKQLYICLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337


>gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    D    Q  L++L        +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL    +++N I    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     +Y+++I N R   +GL   F  + NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFAASSNPIPWIN 337


>gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5]
 gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5]
          Length = 315

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 122/302 (40%), Gaps = 39/302 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110
           N W+ TE P+ DD    K    L+  E    +    F ++++ LV  N+ L     L + 
Sbjct: 35  NRWLETEFPLADDA---KDVARLSGAELEFYRFLFAFLSAADDLV--NVNLGNLSELFTQ 89

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166
            +   Y + Q   E VHS  +  I   L  ++      Y E     P++  K +W  +  
Sbjct: 90  KDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGYVEDALSDPAVRRKVDWLER-- 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                       + A  E + + +V  ++ EG++F + FA I  L   N  V   +    
Sbjct: 148 ------------RVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTCQTNDL 195

Query: 227 IMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I RDE++H      + N  +  E P         + R +  EA  +E  +     P+G  
Sbjct: 196 ISRDEAVHTTASCCIFNNYLGGERPP------PDRVRKLFREAVEIEREFIWSRAPRGSH 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVT 341
            L+  +   Y+++ A+R    I L PLF      T+ P   M+     +K  NFFE R T
Sbjct: 250 ILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLALMTA----EKHTNFFERRST 305

Query: 342 EY 343
            Y
Sbjct: 306 TY 307


>gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   + + +        + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337


>gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
 gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFATRTNPIPWIN 337


>gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
 gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
          Length = 381

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 29/297 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDFMN---LPSHEQHIFISNLKYQTLLDSIQGRSPNMALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   +F E +HS ++ +I+ +L  D  E+F        I  +A+   QY   L  + 
Sbjct: 106 ETWIETWSFSETIHSRSYTHILRNLFTDPSEVFEDIVTNVEIQKRASDIAQYYDALIHAV 165

Query: 173 SFTT--GTKDADQEFL---------------QDLFVFYV---VFEGMWFYTGFAQILSLG 212
            F    G + +  E+L               + L++        E + FY  FA   +  
Sbjct: 166 QFMQLHGLEQSKIEYLDLDGNPEKLTLRVIKKKLYLCMCSINALEAIRFYVSFACSFAFA 225

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEA 268
             + + G A+  + I RDE+LHLN    ++N      ++P +     E   K R +   A
Sbjct: 226 ERDLLEGNAKIIKLIARDEALHLNSTQQILNIWADGKDDPEMAEIAIECHAKGRDIFLTA 285

Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
              E  +A      G  +GLN     QY+++I+N R   IG E  F+   NP PW++
Sbjct: 286 AAQEKEWAAYLFKDGSMIGLNEVILCQYVEYISNVRMQAIGYEAPFEIKNNPIPWIN 342


>gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   + + +        + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337


>gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165

Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   + + +        + L++  +     E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337


>gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
 gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSCDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   +    ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGRHQVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I+N R   +GLE  FK   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYISNIRMQAVGLELPFKTRSNPIPWIN 337


>gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas
           ingrahamii 37]
 gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychromonas ingrahamii 37]
          Length = 381

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 29/297 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDFLN---LPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +I+ +L  +  E+F        I  +A + +  Y   + + 
Sbjct: 106 ETWIETWSFSETIHSRSYTHILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYDALIHAT 165

Query: 173 SFTT--GTKDADQEFL---------------QDLFVFYV---VFEGMWFYTGFAQILSLG 212
            F    G +  D +++               + L++        E + FY  FA   +  
Sbjct: 166 QFMQLHGLEQTDIDYINLENQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFACSFAFA 225

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQ--QKSRTMLHEA 268
             + + G A+  + I RDE+LHLN    ++N      ++P +     +   + R +  +A
Sbjct: 226 ERDLLEGNAKIIKLIARDEALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGREIFLQA 285

Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
              E  +A      G  +GLN     QY+++IAN R   IG  P F+   NP PW++
Sbjct: 286 AQQEKDWAKYLFKDGSMIGLNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIPWIN 342


>gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 369

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   W+ Y  A  + W   EV +  DL  W+S   L DDER  I   L FFA+S+
Sbjct: 14  IFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERFFISHVLAFFAASD 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V    + +   E R +   Q   E +HS  +  +I +   +  E   LFN   
Sbjct: 71  GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIE 130

Query: 151 EVPSITAKANWALQY 165
            +P +  KA+WAL +
Sbjct: 131 TLPCVKKKADWALNW 145


>gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 376

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    D    Q  L++L        +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL    +++N I    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     +Y+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFATASNPIPWIN 337


>gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Dickeya dadantii 3937]
 gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Dickeya dadantii 3937]
          Length = 376

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   AF E +HS ++ +II ++  D   +F+                  Y E+  +T
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +  +   + T  ++  +      +  ++    L     + E + FY  FA   +      
Sbjct: 166 SYYHLLGEGTHQVNGKTVNINVYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAKIAEECQQQCYDLFVLAAQQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337


>gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus]
 gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus]
          Length = 280

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 24/281 (8%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131
           LT  E+  +K  L FFA  + +V  N+V    + +S+   E   + + QA  E +H+ T+
Sbjct: 7   LTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAANELIHNETY 66

Query: 132 QYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF-LQ 187
             +I +L        +  +     PSI   ANW  ++                D+   L 
Sbjct: 67  MNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWM---------------DRRIPLP 111

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG+ F   FA I      N++ G+ +  ++I +DE+LH  F   V   I +
Sbjct: 112 ERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFAEAVYRYI-V 170

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           +    + +  Q++ + +L  A      + H+ +    V ++A     YM+  A+     +
Sbjct: 171 DVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNAADGLAFSL 230

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G E  F  +++   +M  +I +  + NFFE  V +Y +G E
Sbjct: 231 GYEKFFN-SDSSLDYML-LIGMDNKTNFFEEVVADYAKGLE 269


>gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 376

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    D    Q  L++L        +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL    +++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     +Y+++I N R   +GL   F  + NP PW++
Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFATSSNPIPWIN 337


>gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus
           nasoniae]
          Length = 378

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 51  WRPEEIDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164
             ++   +F E +HS ++ +II ++  +   +F+       + +    I+A  +  ++  
Sbjct: 108 ETWVETWSFSETIHSRSYTHIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELT 167

Query: 165 -YTQTLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
            Y   L   S T   K    +  E  + L++  +     E + FY  FA   +      M
Sbjct: 168 SYYHLLGEGSHTINGKSVIISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    KE ++    +  +A   E 
Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEK 287

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 288 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLKLPFETRSNPIPWIN 339


>gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii
           Ech703]
 gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703]
          Length = 376

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEG----------ELFNMYREVPSITAKANWAL 163
             ++   +F E +HS ++ +II ++  D            E+    R++     +     
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRARDISGFYDELIELT 165

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF------EGMWFYTGFAQILSLGRANKM 217
            Y   L   +     K  D    Q     Y+        E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGTHQVNGKTVDINVYQLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAKVAEECQQQCYDLFVMAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337


>gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 376

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  +   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +     E + FY  FA   +      M
Sbjct: 166 QLYSLYGEGTYTVDGKECVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 DWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337


>gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
 gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSKDRLDFQA---LPEHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172
             ++   AF E +HS ++ +II ++      +F+       I+ +A+    Y   L +S 
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQSPELIFDDIVSNDKISERADAVTTYYDDLINSV 165

Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217
           S      +   E      + +LF      Y+      + E + FY  FA   +      M
Sbjct: 166 SLYNLYGEGKHEINGKTVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273
            G A+  + I RDE+LHL+    ++N  Q   ++P +     Q +     M  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVQAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IGL   F+   NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENNSNPIPWIN 337


>gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           ducreyi 35000HP]
 gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus
           ducreyi 35000HP]
          Length = 376

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                +  GT   D        +   + L++  +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGTYQVDGKACAVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     ++N I    ++P +     E QQ++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLAGTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     +Y+++I N R   +GL   F    NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKEILVKYVEYITNIRMQSVGLPLPFATQSNPIPWIN 337


>gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 376

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDLSRDYIDFQ---NLPQHEKHIFVSNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++      +F+   +  +I  +A    +Y   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIANRAKDIAKYYDDLIELT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  G    +         E  + L++  +     E + FY  FA   +     KM
Sbjct: 166 SYWHLFGEGKHTINGKKIKIDLHELKKKLYLCLISVNALEAIRFYVSFACSFAFAEREKM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +      E     +KE  ++   +    +  E 
Sbjct: 226 EGNAKIIRLIARDEALHLTSTQHILNILHNDKNNEGMSDISKECYEECYHLFIRVSDQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   IGL   FK   NP PW++
Sbjct: 286 IWAKYLFQNGSMLGLNQEILSQYIEYITNIRMKAIGLPSPFKILSNPIPWIN 337


>gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 328

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 25/298 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P EVP+  D+  W     L++ ER++ KR L      ++   N+ + ++     N + 
Sbjct: 39  WLPEEVPISKDIPSWSQ---LSESERVLYKRVLAGLTLLDTKQGNDGIPSMMELTENFQR 95

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWAL-QYTQTL 169
           +  L      E +H+ ++  I T+L L + E+ +++    E P +  KA   L QY  T 
Sbjct: 96  KAVLSFMGTMEEIHAKSYSSIFTTL-LSKQEINDLFVWIEEEPLLQNKAKLVLRQYKNTH 154

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +          +            V  E   FY+GF   L L    KM+   E    I+R
Sbjct: 155 TPKGLYMSMATS------------VFLESFLFYSGFFYPLFLAGQGKMISSGEIISLILR 202

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DESLH  + I ++ Q K    H   K E ++K  ++L E  L+E    +  +     GL 
Sbjct: 203 DESLHGKY-IGLLAQEKFNEFHYDDKNELKEKVYSLLKE--LMENEEKYTKLLYEGSGLE 259

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                 ++++ AN     +G E  +K        ++ +    K  +FF T+   YQ+G
Sbjct: 260 EQVI-NFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNGYQKG 316


>gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 337

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 39/305 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P EVP+  D+  W     LT+ ER++ KR L      ++   N+ + ++     N + 
Sbjct: 45  WLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSMMDLTENFQR 101

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170
           +  L      E +H+ ++  I T+L L + E+ +++    E P +  KA   L+  + + 
Sbjct: 102 KAVLSFMGTMEEIHAKSYSSIFTTL-LSKHEIDDLFLWIEEEPLLQNKAKIVLRQYKNVE 160

Query: 171 SPS---FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            P     +  T               V  E   FY+GF   L L    KM+   E    I
Sbjct: 161 DPKSLYMSMATS--------------VFLESFLFYSGFFFPLYLAGQGKMIASGEIISLI 206

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT------LLEIAYAHETMP 281
           +RDESLH  + I ++ Q K+       +EF    R  L +A       L+E    +  M 
Sbjct: 207 LRDESLHGKY-IGLLAQEKL-------REFSYDDRNELKDAVYRLLKELMENEEKYTRML 258

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +GL       ++++ AN     +G E  +K        ++ +    K  +FF T+  
Sbjct: 259 YEGLGLEDQVI-NFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGN 317

Query: 342 EYQQG 346
            YQ+G
Sbjct: 318 GYQKG 322


>gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella
           ictaluri 93-146]
 gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 376

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETT 165

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                   GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 GYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E   +   +  +A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 286 EWAGYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLPLPFETRSNPIPWIN 337


>gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula]
          Length = 206

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D+  W +   L+D E+  I   L FFA+S+
Sbjct: 31  MFPVRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWAT---LSDSEKHFISHVLAFFATSD 87

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +  PE R +   Q   E +HS  +  ++ +   D  E   LFN   
Sbjct: 88  GIVLENLAARFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDSREKHKLFNAIE 147

Query: 151 EVPSITAKANWALQYTQTLSS 171
            +P +  KA WAL +  + +S
Sbjct: 148 NLPCVARKAEWALSWINSSTS 168


>gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
 gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
          Length = 380

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L D E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 53  WRPEEVDVARDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 109

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     Y  TL   +
Sbjct: 110 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMT 169

Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   +        +   + L++  +     E + FY  FA   +      M
Sbjct: 170 NYYHMFGEGTHTFEGKEITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWTKEFQQKSRT--MLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     + +     +  +A   E 
Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEK 289

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A     +G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 290 EWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 341


>gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 322

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 28/304 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W+P ++P+ +DLA W +   LTD ER M  R        ++  A    +A+      
Sbjct: 31  GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
           P     L   AF E+VH+ ++  I ++L         F      P +  KA   + Y + 
Sbjct: 88  PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQIVVDYYRG 147

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
             + +    +               V+ E   FY+GF   +      K+   A+  + I+
Sbjct: 148 DDALARKAAS---------------VMLESFLFYSGFYLPMYWASHGKLTNTADLIRLII 192

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGFVGL 287
           RDE++H  + I    +  +E      ++  ++    L E     E+AYA +   +  VG 
Sbjct: 193 RDEAVH-GYYIGYKCRKALERLDASARDAHRRYTYALLETLYANEVAYAADLYDE--VGW 249

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVTEYQ 344
            A     YM+F AN+    +G EP+F+ +E    P +   +D    +N  FF    + Y 
Sbjct: 250 TA-EVVSYMRFNANKALANLGYEPMFRASECQVNPAILSALDPGAGENHDFFSGSGSAYV 308

Query: 345 QGAE 348
            G +
Sbjct: 309 IGKQ 312


>gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 359

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 32  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 89  ETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMT 148

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              +   + T  ++  + T   + A ++ L    +     E + FY  FA   +      
Sbjct: 149 GYYHLLGEGTHQVNGKTVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 207

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E
Sbjct: 208 MEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 267

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F+   NP PW++
Sbjct: 268 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFETRSNPIPWIN 320


>gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 376

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160
             ++   +F E +HS ++ +II ++  D   +F+       I  +A              
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEEILKRAKDISGYYDDLIEMS 165

Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
             W L  + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E +Q+   +   A   E
Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEVAVECEQQCYDLFVLAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFQTRSNPIPWIN 337


>gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
 gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
          Length = 324

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 32/322 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    +   +   + W+ +EV    D+  + S   LT  E+ ++K++L   A  E  
Sbjct: 12  PFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHSH--LTTGEKDVVKKSLLAIAQIEVA 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V  +    +Y+HL  PE        A  E  HS  +  ++  LG +    F    EVP+I
Sbjct: 70  V-KSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVVEVPAI 126

Query: 156 TAKANW---ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  +   AL++T+            +  ++++  L +F ++ E +  ++ FA +LS  
Sbjct: 127 KKRIAYLTEALEHTKA-----------EDPKDYVSSLILFSILIENVSLFSQFAIVLSFN 175

Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266
           R    M  ++    +   DE +H N GI +INQI+ E P  + +E  +K     +R++  
Sbjct: 176 RFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSIEV 235

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
           E  +L+  + +  +      +N  +   +M+F  +     IGL   +  T     P  W 
Sbjct: 236 EEEILDWIFENGQLE----NINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWF 291

Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345
            E +      +FF  R  +Y +
Sbjct: 292 EEEVFANSLDDFFARRPVDYTK 313


>gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
 gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
          Length = 381

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 27/298 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W  TE+ ++ D   W     L  + + +   NL +   ++S ++     AI   +S PE 
Sbjct: 47  WTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFISRAPEAAIMPLVSRPEL 103

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL---------- 163
              L + ++ E +HS  +  II ++  D  E  +   +     A+   ++          
Sbjct: 104 EGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELFDELYQLG 163

Query: 164 QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           QY           T     F    ++   + L   F  Y + E M FY  FA   +L   
Sbjct: 164 QYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFACTFALAEN 222

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           + + GIA+  Q I +DE+LH      +I  +  +       E   K+   L +    EI 
Sbjct: 223 DILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAVAKAPAQLLKTLKTEIE 282

Query: 275 YAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWMSEVID 328
           + H     +  +GLNA   E+Y+ F+       IG++    L   T+NP PW+   +D
Sbjct: 283 WGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPVITKNPIPWIMNWLD 340


>gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 329

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 139/318 (43%), Gaps = 19/318 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +   +  
Sbjct: 15  EIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAISQI 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E  V       +Y +   PE           E  H   + +++  LGL+E  +F   R+ 
Sbjct: 73  EVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLNE--MFRNVRQY 129

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            +I A+    ++Y +     +F      + Q+F+  L +F +  E +  ++ F  ++S  
Sbjct: 130 KAIMAR----IEYME-----AFMRKKDVSQQDFVLSLVMFSLFVEHISLFSQFVIMMSFN 180

Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
           +  N   GI+   +   ++E +H  FGI + + ++ E P L+T EF  + + +  +A   
Sbjct: 181 KHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQAFNA 240

Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVI 327
           E A        G +  L+  + E Y+    N     +GLEP++  +        W    I
Sbjct: 241 EKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWFDIEI 300

Query: 328 DLKKEKNFFETRVTEYQQ 345
              KE +FF  R T+Y +
Sbjct: 301 LSTKETDFFNKRSTDYSK 318


>gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
 gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
          Length = 389

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+       A+   +S+P  
Sbjct: 58  WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 114

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +
Sbjct: 115 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKT 174

Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217
                       F+ G K A  E ++ L++  +V+   E + FY  FA   +  +  + M
Sbjct: 175 RLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 234

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     +I Q+++  +   W K   E +Q++  +  E    E 
Sbjct: 235 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 294

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
            +A      G   GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++
Sbjct: 295 EWATHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 352


>gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
 gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
          Length = 379

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+       A+   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKT 164

Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217
                       F+ G K A  E ++ L++  +V+   E + FY  FA   +  +  + M
Sbjct: 165 RLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 224

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     +I Q+++  +   W K   E +Q++  +  E    E 
Sbjct: 225 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 284

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
            +A      G   GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++
Sbjct: 285 EWAGHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 342


>gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           sp. PRwf-1]
 gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter sp. PRwf-1]
          Length = 377

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L+  E+ +   NL +    +S+   +  + +   +S PE 
Sbjct: 49  WRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A+    Y   L   S
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHS 165

Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
                F  GT   + E          + L++  +   V E + FY  FA   +      M
Sbjct: 166 QLYSLFGPGTHIVNGEEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN +    ++P +   + +   +S  +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL  +F  ++ NP PW++
Sbjct: 286 EWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWIN 338


>gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum]
          Length = 230

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 19/181 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W  Y  A  + W   EV +  D   W+S   L   ER  I   L FFA+S+
Sbjct: 52  LFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---LKVGERHFISYVLAFFAASD 108

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N++    + +  PE R +   Q   E +HS  +  +I +   D  E   LFN   
Sbjct: 109 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 168

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +  +  KA WAL +              D+   F + L  F  V EG++F   FA I  
Sbjct: 169 NLTCVAKKAQWALDW------------IGDSKSTFAERLVAFAAV-EGVFFSGSFAAIFW 215

Query: 211 L 211
           L
Sbjct: 216 L 216


>gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
 gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
          Length = 376

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDY---NALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMT 165

Query: 173 SFTTGTKDADQEFLQDLFVFYV---------------VFEGMWFYTGFAQILSLGRANKM 217
           S+     + + +      V  +                 E + FY  FA   +      M
Sbjct: 166 SYYHLLGEGNHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWIN 337


>gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           frigidimarina NCIMB 400]
 gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 376

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 28/293 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDF---GNLPEHEQHIFLSNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYII------TSLGLDE-----------GELFNMYREVPSIT 156
             ++   +F E +HS ++ +II       SL  D+           G++   Y ++ ++T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSLVFDDIVQNDEILKRAGDIAAYYDDLINLT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215
              N   + T  ++    T  ++   +     L +  V   E + FY  FA   +     
Sbjct: 166 QINNLLGEGTHIINGKEITVNSRILKKSLY--LCMMSVNALEAIRFYVSFACSFAFAERR 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHLW--TKEFQQKSRTMLHEATLL 271
            M G A+  + I RDE+LHLN    I  + Q   ++P +     E +Q++  +  +A   
Sbjct: 224 VMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMGEIAAECKQEAYDLFVKAAEQ 283

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           E  +A      G  +GLN     QY++FI N+R   + L   +    NP PWM
Sbjct: 284 EKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVHLPQPYDEQSNPLPWM 336


>gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 383

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 56  WRPEEIDVSRDRIDYQN---LPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPEL 112

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 113 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 172

Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   +        +E  + L++  +     E + FY  FA   +      M
Sbjct: 173 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 232

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E 
Sbjct: 233 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 292

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 293 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWIN 344


>gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1]
 gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus
           1]
 gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus
           1]
          Length = 355

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 31/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W  TE  + DDL   +    L++DE+   +    F ++++ LV  NI  +L+++   +
Sbjct: 75  NRWTETEFVIADDL---EDVGKLSEDEKNFYRFLFTFLSAADDLVNLNIDSLLSLF---T 128

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSITAKANWALQY 165
             +   Y   Q   EAVHS  +  I   L  ++     E        P+I +K  W  + 
Sbjct: 129 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAILSKLEWLERR 188

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               +S              + + ++  ++ EG++F   FA I  L   N  V   +   
Sbjct: 189 VAECTS--------------IAEKYILMILIEGIFFTASFAAIAYLRVNNLFVVTCQINN 234

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H+     +      +N     K    +  T+  EA  LE  +     P+   
Sbjct: 235 LISRDEAIHVEASCCIF-----KNYLAGPKPTTARIHTLFKEAVRLECEFLRTAAPRTSN 289

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            +N  +   Y+++ A+R    + + P++   + P  +   ++      NFFE R T Y 
Sbjct: 290 IINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERRNTAYS 348


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 148/348 (42%), Gaps = 42/348 (12%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC-NNHWMPTEVPMQDDLALWK 69
           QA  ++ N+ +KR+         L P +Y  A   Y+ A  +++W+ +E     D+  +K
Sbjct: 100 QARNRKTNIFEKRI--------NLKPYEYP-ALNDYVDAIRHSYWIHSEFNFTSDIQDFK 150

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           ++  LT  E+  IK  +   +  E  V +     IY  +  PE        A  E  H  
Sbjct: 151 TR--LTVVEQNAIKNTMLAISQIEVAVKS-FWGEIYNKMPKPEIGAVGATFAESEVRHHD 207

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            + +++  LGL+    F   ++ P I  +    + Y +T    +      + ++E+ + +
Sbjct: 208 AYSHLLEILGLNNE--FKHLKKKPVIMKR----VHYLET----ALKNAKSEDNKEYAESI 257

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
            +F +  E +  ++ F  I++  +   M+ G++   +   ++E++H +FGID+I  IK E
Sbjct: 258 LLFSLFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAE 317

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEI--------AYAHETMPKGFVGLNAPSCEQYMQFIA 300
           NP  +  E  +  R +  EA   E         A   E +PK  +        ++++   
Sbjct: 318 NPTWFDAEHNEIVRELCREAFASESELVDWIFEAGELEFLPKDVIN-------EFLKNRF 370

Query: 301 NRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
           N     IG+E +F   E       W  + I   K  +FF  R   Y +
Sbjct: 371 NNSLESIGIEKVFDVDETLLTQTEWFDDEIIGTKHGDFFVKRSINYSK 418


>gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9]
 gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 321

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 34/301 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ T++P+ DDL   K    LT  ER   +    F ++++ LV  N+  + A++   +
Sbjct: 40  NRWLDTDLPISDDL---KDVAKLTPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
             +   Y + Q   E  HS  +  I   L L   +     R V SI   A    +    L
Sbjct: 94  QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDAAARARYVASIIGDAAIK-RKVAWL 150

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
            +     G+       + + ++  ++ EG++F + FA I  L   N  V   +    I R
Sbjct: 151 QAKVRECGS-------VAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISR 203

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287
           DE++H            I N +L   E  +  R   +  EA  +E  +     P+    L
Sbjct: 204 DEAIHTR------ASCCIYNNYLGGFEKPEPKRIYELFSEAVNIECEFLLSHAPQNSHLL 257

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +      Y+++ A+R   +IGL PLF      T  P  +M+    ++K  NFFE R T Y
Sbjct: 258 DIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMT----VEKHTNFFERRSTAY 313

Query: 344 Q 344
            
Sbjct: 314 S 314


>gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus]
          Length = 181

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144
           L FFA S+ +V  N+V   Y  +   E R +   QA  E +H+  +  +I +L  +E E 
Sbjct: 7   LAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLIPNEDEQ 66

Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             +F+ +   P IT K  WA Q+ +              +  F++ L  F VV EG+ F 
Sbjct: 67  RSIFSSFMTTPGITEKTRWAKQWLE------------RENLSFVERLVAFAVV-EGLLFS 113

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             FA I  L +   M G+    + I RDE LH +F 
Sbjct: 114 GSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFA 149


>gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 244 QIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           QI IEN H    L  K  +++ + ++ ++  +E  +  + +P   VG+N+    QY++F+
Sbjct: 102 QIAIENIHSEILLRNKLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFV 161

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           A+R    +G   ++  + NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 162 ADRLLGALGYGKMYNVS-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 207



 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W++   LT D
Sbjct: 3   SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           E+  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS   
Sbjct: 60  EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEIL 113


>gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
 gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
          Length = 324

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 18/297 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ +E+    D   + S   L+ +E+  IKR+L   A  E  V +     +Y HL  PE 
Sbjct: 30  WVHSEIDFTADTQDFHSH--LSTNEKESIKRSLLAIAQIEVNVKS-FWGNLYNHLPKPEF 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  A  E  HS  +  ++  LG +    F    E+P I  +  +         S +
Sbjct: 87  NGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVIEIPVIKKRIAYL--------SNA 136

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232
                 D  + +++ L +F ++ E +  ++ FA ILS  R    M  ++    +   DE 
Sbjct: 137 LKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILSFTRFQGVMKNVSNIIAWTSIDEQ 196

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
           LH N GI +IN+IK E P    +  +Q+   ++ E+  +E          G    +N   
Sbjct: 197 LHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESINIEDEILGWIFENGDLEHINRRD 256

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              +M++  +    QIG + L+  +E   +P  W  E I      +FF  R  EY +
Sbjct: 257 LLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEEEIFANSLDDFFAKRPVEYTK 313


>gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
 gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
          Length = 399

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 72  WRPEEIDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 128

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   
Sbjct: 129 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 188

Query: 173 SF----TTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S+      GT   + + +        + L++  +     E + FY  FA   +      M
Sbjct: 189 SYYHLLGEGTHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 248

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E 
Sbjct: 249 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEK 308

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL   FK   NP PW++
Sbjct: 309 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWIN 360


>gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1]
 gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1]
          Length = 321

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 26/297 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ T++P+ DDL   K    LT  ER   +    F ++++ LV  N+  + A++   +
Sbjct: 40  NRWLDTDLPISDDL---KDVAKLTPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
             +   Y + Q   E  HS  +  I   L L   +     R V SI   A    +    L
Sbjct: 94  QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDAAARARYVASIIGDAAIG-RKVAWL 150

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
            +     G+       + + ++  ++ EG++F + FA I  L   N  V   +    I R
Sbjct: 151 QAKVRECGS-------VAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISR 203

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287
           DE++H            I N +L   E  +  R   +  EA  +E  +     P+    L
Sbjct: 204 DEAIHTR------ASCCIYNNYLGGFEKPEPKRIYELFSEAVNIECEFLLSHAPQYSHLL 257

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +  +   Y+++ A+R   +IGL PLF   +    +    + ++K  NFFE R T Y 
Sbjct: 258 DIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMTVEKHTNFFERRSTAYS 314


>gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CP220]
          Length = 369

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 33/312 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   EV    D A +   N L +  +    R L      +S+    ++  I   ++NPE 
Sbjct: 48  WQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPEL 104

Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
              +   Q FE + HS ++ +I+ S+  +  ++F+   E+P +       L+   ++S P
Sbjct: 105 EVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPEL-------LELADSISKP 157

Query: 173 ---------SFTTGTKDADQEFLQ--DLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GI 220
                     +  G  D ++  ++  ++ V   + EG+ FY+GFA I S+  +  ++   
Sbjct: 158 YEEAFEAVTKYHLGLIDTEEVKVKVLNMLVEINILEGVRFYSGFATIWSMHYSQGLMERT 217

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENP-----HLWTKEFQQKSRTMLHEATLLEIAY 275
            +  Q I RDE+LHL    ++I +I   +P     + W       +   L EA   E  +
Sbjct: 218 GKILQLICRDENLHLAITQNLI-KILSRSPEEGFINAWNSIKDNITDRYL-EAADQEFKW 275

Query: 276 AHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEK 333
                 KG F+G+     + Y++++ N+R   IG + +F  + +NP PW+   I+  K +
Sbjct: 276 IDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVETYINYDKNE 335

Query: 334 NF-FETRVTEYQ 344
               E+ +T Y+
Sbjct: 336 VLPQESEITNYK 347


>gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1]
          Length = 331

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 32/300 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110
           N W+ T++P+ DD+   K    L++ E    +    F ++++ LV  N+ L     L + 
Sbjct: 50  NRWLETDLPIGDDI---KDITTLSESELDFYRFLFTFLSAADDLV--NLNLGNLSELFTQ 104

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166
            +   Y + Q   E VHS  +  I   L   + E    Y +     P +  K  W     
Sbjct: 105 KDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEWL---- 160

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                      T+  + E + + ++  ++ EG++F   FA I  L   N  +   +    
Sbjct: 161 ----------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTNDL 210

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE++H      + N           K   ++  ++  EA  LE  +     P+    
Sbjct: 211 ISRDEAIHTTASCCIYNNYLPAQ----IKPSTERIHSLFREAVELECEFISTCAPRCSNL 266

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP-FPWMSEVIDLKKEKNFFETRVTEYQ 344
           LN      Y+++ A+R    I + P+F     +P FP    VI+  K  NFFE   T Y 
Sbjct: 267 LNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMVIE--KHTNFFEKHSTTYS 324


>gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii
           NCTC 11218]
          Length = 377

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDYAK---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A     +   L   +
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMT 165

Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                F  GT + + E +               +     E + FY  FA   +      M
Sbjct: 166 NDYHRFGEGTHELNGETVHVSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     +IN ++  +++       +E +Q+   +  +A   E 
Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   +GL+  +   T NP PW++
Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPSATTNPIPWIN 338


>gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
 gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
          Length = 379

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 26/298 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+       A+   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKT 164

Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217
                       F  G K A  E ++ L++  +V+   E + FY  FA   +  +  + M
Sbjct: 165 RLYQNALEEYHEFGEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 224

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     +I Q+++  +   W K   E +Q++  +  E    E 
Sbjct: 225 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 284

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
            +A      G   GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++
Sbjct: 285 EWAAHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 342


>gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
 gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
          Length = 331

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 32/300 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110
           N W+ T++P+ DD+   K    L++ E    +    F ++++ LV  N+ L     L + 
Sbjct: 50  NRWLETDLPIGDDI---KDVTTLSESELDFYRFLFTFLSAADDLV--NLNLGNLSELFTQ 104

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166
            +   Y + Q   E VHS  +  I   L   + E    Y +     P +  K  W     
Sbjct: 105 KDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW----- 159

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                      T+  + E + + ++  ++ EG++F   FA I  L   N  +   +    
Sbjct: 160 ---------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTNDL 210

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE++H      + N           K   ++  ++  EA  LE  +     P+    
Sbjct: 211 ISRDEAIHTTASCCIYNNYLPAQ----IKPSTERIHSLFREAVELECEFISTCAPRCSNL 266

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP-FPWMSEVIDLKKEKNFFETRVTEYQ 344
           LN      Y+++ A+R    I + P+F     +P FP    VI+  K  NFFE   T Y 
Sbjct: 267 LNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMVIE--KHTNFFERHSTTYS 324


>gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
 gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
          Length = 324

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 33/278 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + +
Sbjct: 25  TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSDQERQTLNLVFGGLTTLDTLQSQDGM 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++   + N +    L    F E+VH+ ++  I  +L        N   E+ +I   A +
Sbjct: 80  ASLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADS 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  + TGT    +       +  V  E   FY+GF   L     NKM+ 
Sbjct: 132 NEFLQYKANRINDIYQTGTPLEKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    QI     P   +   Q     +L+E    E  Y HE
Sbjct: 185 VAEIIKLIIRDESVHGTY-IGYKFQIGFNKLPESESTALQSWMYDLLYELYENEEKYTHE 243

Query: 279 TMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
                    +    EQ + F+   AN+    +G EP+F
Sbjct: 244 LYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275


>gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 376

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 125/293 (42%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++   +F E +HS ++ +II ++  D   +F+                  Y ++  +T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMT 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              +   + T  ++  + T   +   ++    L     + E + FY  FA   +      
Sbjct: 166 GYYHLLGEGTHQVNGKTVTVTLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E
Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R   +GL   F    NP PW++
Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFATRSNPIPWIN 337


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 153/342 (44%), Gaps = 30/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           Q+ +++ N+ +KR+         L P +Y   +E   +  +++W+ +E     D+  +K+
Sbjct: 95  QSQKRKSNIFEKRI--------NLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKT 146

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
           +  LTD E+  IK  +   +  E  V       IY  +  PE        A  E  H+  
Sbjct: 147 R--LTDTEQSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEIGSVGATFAESEVRHADA 203

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           + +++  LGL+    F   ++ P+I  +    +QY +T    +      + ++++ + + 
Sbjct: 204 YSHLLEILGLNNE--FKNLKKKPAIMKR----VQYLET----ALKNAKSEDNKDYAESIL 253

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           +F +  E +  ++ F  I++  +   M+ G++   +   ++E +H +FGID+I  IK EN
Sbjct: 254 LFSLFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKEN 313

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR---RCHQ 306
           P  +  ++ +  + M  +A + E +       KG   L+    +   +FI NR       
Sbjct: 314 PDWFDADYHKTIQQMCKDAFIAESSVVDWIFEKG--ELDFLPKDVVNEFIKNRFNNSLES 371

Query: 307 IGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
           IG+E +F+  E       W  + I   K  +FF  R   Y +
Sbjct: 372 IGIEKIFEVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSK 413


>gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1
           AAJ-2005]
          Length = 358

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 137/331 (41%), Gaps = 22/331 (6%)

Query: 22  KRMLNARSDV----NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           K   +++SD+      L P +Y    +   +  N++W+  E     D+  ++     T  
Sbjct: 28  KDDTDSQSDIFTARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGDIQDYRVNT--TPA 85

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IKR +   A  E  V       IY  +   E     +  A  E  H   + +++  
Sbjct: 86  EQTTIKRTMLAIAQIEVQV-KTFWSDIYEDMPKAEVGNVGMTFAESEVRHMDAYSHLLDV 144

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           LG+++   F    EVP++  +  +  +Y +         G+ +  QE +  + +F    E
Sbjct: 145 LGIEDE--FEQITEVPAVQQRIEYLDEYLEM--------GSSENKQESVMGILMFSTFVE 194

Query: 198 GMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            +  ++ F  + S  +   K  GIA   +   ++E +H  FG +++  I+ ENP L+  +
Sbjct: 195 HVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVETIREENPDLFDDD 254

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           F  + +    +A   E       +  G +  L     + +++   N+     G++P+F  
Sbjct: 255 FTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQSLDNAGVDPVFDP 314

Query: 316 TENPFP---WMSEVIDLKKEKNFFETRVTEY 343
            E+      W  E I + KE +FF  R T Y
Sbjct: 315 DEDVVDETRWFDEDIMMTKENDFFSKRSTTY 345


>gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas
           auensis DSM 9187]
 gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187]
          Length = 377

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +++   L   E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQT---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----------WAL 163
             ++   AF E +HS ++ +II ++  D   +F+       I  +A              
Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVVNEQIIKRAEDIAGYYDELIELT 165

Query: 164 QYTQTLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           QY Q L   +     K    + +E  + L++  +     E + FY  FA   +      M
Sbjct: 166 QYWQLLGEGTHQVNGKTVVVSRRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N ++  N  P +    +E   +   +  +A   E 
Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHMLNILREGNDDPEMAEIARELHDECFALFKKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
            +A      G  +GLN     QY++FI N R   +GL   F    +NP PW++
Sbjct: 286 EWASYLFKDGSMLGLNKDILCQYVEFITNVRMQGVGLPLAFDADRQNPLPWIN 338


>gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 324

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 134/307 (43%), Gaps = 19/307 (6%)

Query: 45  KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           +++ A N + W+ +EV    D+  ++S+  L   E+  +K  L   A  E  V       
Sbjct: 20  QFVEAINKSFWVHSEVDFTADVQDFQSQ--LEPHEKNAVKNALLAIAQIEVSV-KTFWGN 76

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           +Y HL  PE        A  E  HS  +  ++  LG ++   FN   E+P+I  + ++  
Sbjct: 77  LYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYNDA--FNHVVEIPAIKKRIDFL- 133

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222
             +  L   + TT      +E++  L +F ++ E +  ++ FA ILS  R    M  ++ 
Sbjct: 134 --SNVLKHANSTTP-----KEYVSSLLLFSILIENVSLFSQFAIILSFTRFKGYMKNVSN 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
              +   DE +H N GI +IN+I+ E P L T    +   T++  +  LE          
Sbjct: 187 IIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSIELEAEILDWIFEM 246

Query: 283 GFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKKEKNFFET 338
           G +  ++  +   +M++  +    +IG++  +  + +   P  W  E +      +FF  
Sbjct: 247 GEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEEEVFANSMDDFFAK 306

Query: 339 RVTEYQQ 345
           R  +Y +
Sbjct: 307 RPVDYTK 313


>gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           denitrificans OS217]
 gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella denitrificans OS217]
          Length = 376

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSRDKIDF---TALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+       + +    I    +  +  T
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNDEILKRAGDIAKYYDDLIHLT 165

Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q  +     T   +  Q  +      + L++  +     E + FY  FA   +      M
Sbjct: 166 QIFNLHGAGTHLIEGKQVTVNLRVLKKSLYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHLN    I  + Q   ++P +     E QQ++  + ++A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMAEIAIECQQQAYDLFYKAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +A      G  +GLN     QY+++I N+R   + L   +    NP PWM
Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVHLPQPYAEISNPLPWM 336


>gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9]
 gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus
           9]
          Length = 311

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 46/307 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHL 108
           +N W+ T+  ++DD    K    LT++E    K    F ++++ LV  NI  ++ +++  
Sbjct: 29  SNRWLETDFTLEDDYQYIKC---LTEEELSFYKFIFTFLSAADDLVNVNIGSLITLFKQ- 84

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS------ITAKANWA 162
              +   Y L Q   E VHS  +  I   L L EG++F   R   +      I AK +W 
Sbjct: 85  --KDIHHYYLEQECIEVVHSRIYSQI--QLMLFEGDIFERLRYTEATIQDAYIKAKVDW- 139

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+Y   ++      G K          ++  ++ EG++F + FA I         V + +
Sbjct: 140 LEYNVQMNP---LIGEK----------YILMIIIEGIFFTSSFAAISYFRNNGLFVVMCQ 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETM 280
               I RDE++H +          I N ++  KE     R   +  EA  +E  +     
Sbjct: 187 LNDLISRDEAVHTS------ASCCIYNNYISYKEKPAIPRIHQLFMEAVNIECNFISAYA 240

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFF 336
           PK    +N  +  QY+++ A+R    I +  LF       + P  +M+     +K  NFF
Sbjct: 241 PKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMTA----EKHTNFF 296

Query: 337 ETRVTEY 343
           E   T Y
Sbjct: 297 ERHSTAY 303


>gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
          Length = 316

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 42/284 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           + A+ ++    + R  L    F E++H+ T+  I+ SL        N ++++  I    N
Sbjct: 72  LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYTWMN 123

Query: 161 --WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
               +Q+     +  +  GT          + V  V  EG+ +Y+ F   L     NK+ 
Sbjct: 124 NDRRMQFKAKKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176

Query: 219 GIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHEATL 270
            +AE  + ++RDES+H       F  D  N++ I   EN   W   F       L E   
Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQD-FNELSITEQENYTNWMYSF-------LEELLD 228

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E AY  E   +  +GL     + ++++ AN+    +G +  FK
Sbjct: 229 NEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269


>gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 316

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 48/287 (16%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           + A+ ++    + R  L    F E++H+ T+  I+ SL        N ++++  I    N
Sbjct: 72  LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIY---N 120

Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           W      +Q+     +  +  GT          + V  V  EG+ +Y+ F   L     N
Sbjct: 121 WMNNDRRMQFKARKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQN 173

Query: 216 KMVGIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHE 267
           K+  +AE  + ++RDES+H       F  D  N++ I   EN   W   F       L E
Sbjct: 174 KLANLAELIKLVIRDESVHGTYLGYKFRQD-FNELAITEQENFTNWMYSF-------LEE 225

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               E AY  E   +  +GL     + ++++ AN+    +G +  FK
Sbjct: 226 LLDNEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269


>gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CPt10]
          Length = 369

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 140/313 (44%), Gaps = 35/313 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   EV    D A +   N L +  +    R L      +S+    ++  I   ++NPE 
Sbjct: 48  WQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPEL 104

Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
              +   Q FE + HS ++ +I+ S+  +  ++F+   E+P +       L+   ++S P
Sbjct: 105 EVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPVL-------LELADSISKP 157

Query: 173 ---SFTTGTK---------DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-G 219
              +F   TK         D   + L ++ +   + EG+ FY+GFA I S+  +  ++  
Sbjct: 158 YEEAFEAVTKYHLGLIDIEDVKVKVL-NMLIEINILEGVRFYSGFATIWSMHYSQGLMER 216

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENP-----HLWTKEFQQKSRTMLHEATLLEIA 274
             +  Q I RDE+LHL    ++I +I   +P     + W       +   L EA   E  
Sbjct: 217 TGKILQLICRDENLHLAITQNLI-KILSRSPEEGFINAWNSIKDNITDRYL-EAADQEFK 274

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE 332
           +      KG F+G+     + Y++++ N+R   IG + +F  + +NP PW+   I+  K 
Sbjct: 275 WIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVETYINYDKN 334

Query: 333 KNF-FETRVTEYQ 344
           +    E+ +T Y+
Sbjct: 335 EVLPQESEITNYK 347


>gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 277

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 23/226 (10%)

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAKANWAL 163
           AF E +HS ++ +II ++  D   +F+                  Y E+  +T+  +   
Sbjct: 14  AFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLG 73

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           + T T++  +     ++  ++    L       E + FY  FA   +      M G A+ 
Sbjct: 74  EGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKI 132

Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279
            + I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E  +A   
Sbjct: 133 IRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYL 192

Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
              G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 193 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 238


>gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
 gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
          Length = 316

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 42/284 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           + A+ ++    + R  L    F E++H+ T+  I+ SL        N ++++  I    N
Sbjct: 72  LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYTWMN 123

Query: 161 --WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
               +Q+     +  +  GT          + V  V  EG+ +Y+ F   L     NK+ 
Sbjct: 124 NDRRMQFKAKKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176

Query: 219 GIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHEATL 270
            +AE  + ++RDES+H       F  D  N++ I   EN   W   F       L E   
Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQD-FNELSITEQENFTNWMYSF-------LEELLD 228

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E AY  E   +  +GL     + ++++ AN+    +G +  FK
Sbjct: 229 NEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269


>gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-064]
          Length = 229

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   +  Y     N+W+P EV M+ D    K    L++ E+      +G  A+ +S  
Sbjct: 39  IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154
               +  I  ++++P         A +E +H+ ++ Y++ S+    ++  +F + R  P+
Sbjct: 95  QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  +    +         ++     +   E L    +   + EG+ FY+GFA   +L R 
Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206

Query: 215 NKMVGIAEQYQYIMRDESLHLNF 237
           NKM G  +   +I RDE  H  F
Sbjct: 207 NKMTGTGKIISFINRDELAHSKF 229


>gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
 gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
          Length = 321

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 127/307 (41%), Gaps = 32/307 (10%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           YL      W+P E+P+ +D ++W +   L ++ +L  +R LG     ++  +  I   I 
Sbjct: 22  YLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDTEQSTGIQ-KIA 77

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
               N   +  L   A  E++H+ ++  I  +L   E   ELFN   E   +  K +   
Sbjct: 78  EKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQEKVD--- 134

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              Q + S     G  D +  F+    V  +  EG+ FY+GF   L L    KMV   E 
Sbjct: 135 ---QIMRS---YYGVADKESLFMS--MVGCLCLEGICFYSGFYLPLWLAGQGKMVNSGEI 186

Query: 224 YQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA---HET 279
              I+RDE LH   G+     Q+  E       + +Q++  M+ E   +E+ Y+   +E 
Sbjct: 187 INLILRDEKLH-TVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYSKVLYEN 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
           +              Y+Q+  N     + L PLF   E   NP   ++ +    K  +FF
Sbjct: 246 LDM------IDDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNHDFF 298

Query: 337 ETRVTEY 343
            T+   Y
Sbjct: 299 STKGNGY 305


>gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
 gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
          Length = 318

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 29/297 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+ DD   W     L+D +R +  + LG     +++     +  I  H+   + 
Sbjct: 28  WTDEEIPLSDDKMSWIE---LSDAQRELYMKVLGGLTLLDTIQGGVGIPKIVEHVDGLQR 84

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E +H+ ++  I T+L   E    +F   +  P +  KA W   Y   +++
Sbjct: 85  KAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWISVYYNNITT 144

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P           + L       V+ E   FY+GF   L L    KM    E    I+RDE
Sbjct: 145 P-----------KSLYLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGEIIDLILRDE 193

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK----GFVGL 287
           S+H    + V+ Q   E     T E + ++ T L E  L++  +A+E +        VGL
Sbjct: 194 SIH-GLYVGVLAQ---EVYRDLTPEERGEADTELRE--LIDRLHANEEVYTKELYSGVGL 247

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
            A     Y+++  N+    +GL+P+F   E NP  + + +    K+ +FF  +   Y
Sbjct: 248 -ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGNGY 302


>gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 500

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P+ +   WE Y  A    W   EV +  D++ W+    LT DER  I   L FFA+S+ +
Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152
           V  N+       +   E R +   Q   E +HS  +  ++ +   D+ E   LFN     
Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             I AKA+W L++    ++P            F + L     V EG++F + FA I  L 
Sbjct: 438 KFIKAKADWCLRWISDHNAP------------FSERLAAVAAV-EGIFFSSSFAAIFWLK 484

Query: 213 RANKMVGIAEQYQYI 227
           +   + G+    + I
Sbjct: 485 KRGLLPGLTHSNELI 499


>gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007]
          Length = 642

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 42/306 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110
           N W   E+    DLA+W     L +  R  IK  L F A  + +V      AI  H+SN 
Sbjct: 87  NQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVKE----AIPMHMSNF 139

Query: 111 --PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
              EC ++   Q   E+ H   +   +T+   ++ EL  +     ++   A   L+    
Sbjct: 140 PLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEEFA--PLKAKVD 197

Query: 169 LSSPSFTTGTKDADQEFLQ---DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           L +  + +G++ A+Q   Q   +L  F  +F  M   TG   ++            E  Q
Sbjct: 198 LINEIYKSGSR-AEQVLYQTVMELIGFCSLFSIMLMPTGLKTLI------------EGNQ 244

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            +  DE+LH +F   + N +         +   +K + ++ +A  +EIA+A   + +   
Sbjct: 245 SVRNDETLHGSFYAALHNIMP-------DRASPEKVKEIIVKAVEIEIAFAMSIVTEDLE 297

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTE----NPFPWMSEVIDLKKEKNFFETR 339
            +N  S + +++  AN  C  +G+EP++  ++T+    +P  +M+    L+K  NFFE R
Sbjct: 298 HINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVSPLSYMNNYETLQK-FNFFEVR 356

Query: 340 VTEYQQ 345
             +Y  
Sbjct: 357 NMDYSH 362


>gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1]
 gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus
           1]
 gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 338

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D    +  +GLTDDE    +    F ++++ LV  N+   +       
Sbjct: 54  NRWLESELVFAGD---EEDVHGLTDDELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 109

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y  R +  P+I  K  W     Q
Sbjct: 110 DILHYYVEQEAIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQ 169

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 170 ACES--------------VPEKFILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLI 215

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K   ++   +  EA  +EI +     P     L
Sbjct: 216 SRDEAVHTTASCYIYNNYLGGH----RKPTAERVYRLFREAVDIEIGFIRSQAPANSRVL 271

Query: 288 NAP---SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +A    + E Y++F A+R    I ++PLF        +   ++  +K  NFFE R T Y
Sbjct: 272 DAAALDAIENYVRFSADRLLVLIKMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAY 330


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 148/334 (44%), Gaps = 22/334 (6%)

Query: 21  DKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +KR    ++D+ +    L P +Y   +E   +  +++W+ TE     D+  +K++  L +
Sbjct: 93  NKRTQERKTDIFERRISLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR--LNE 150

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  IK N     S   +   +    ++  +  PE        A  E  H+  + +++ 
Sbjct: 151 VERSAIK-NTMLAISQIEVAVKSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSHLLE 209

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            LGL++   F   ++ P I  +    +QY ++    +      D ++E+ + + +F +  
Sbjct: 210 ILGLNKE--FKALKKKPVIMKR----VQYLES----ALRNSKSDDNEEYAEAVLLFSLFI 259

Query: 197 EGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           E +  ++ F  I++  +   M+ G++   +   ++E +H +FGID+I  +K E+P  +T 
Sbjct: 260 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEWFTP 319

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           E+ +  + +  +A   E+        +G +  L      ++++   N+    IG+E +F 
Sbjct: 320 EYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEKVFD 379

Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345
             E       W  + I   K  +FF  R   Y +
Sbjct: 380 VDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSK 413


>gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana]
          Length = 231

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 244 QIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           QI IEN H    L TK  + + + ++ +A  +E  +  + +    VG+N     QY++F+
Sbjct: 103 QIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDALSCALVGMNRELMSQYIEFV 162

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           A+R    +G   ++  T NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 163 ADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 208



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+DER  IK
Sbjct: 9   ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERHFIK 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+       +   E R +   Q   E +HS     I+     DE 
Sbjct: 67  HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSE----ILLRTKFDED 122

Query: 144 EL 145
            L
Sbjct: 123 RL 124


>gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus
           equi 103S]
 gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus
           equi 103S]
          Length = 322

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 25/270 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W+P ++P+ +DLA W +   LTD ER M  R        ++  A    +A+      
Sbjct: 31  GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
           P     L   AF E+VH+ ++  I ++L         F      P +  KA   + Y + 
Sbjct: 88  PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQIVVDYYRG 147

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
             + +    +               V+ E   FY+GF   +      ++   A+  + I+
Sbjct: 148 DDALARKAAS---------------VMLESFLFYSGFYLPMYWASHGELTNTADLIRLII 192

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQK-SRTMLHEATLLEIAYAHETMPKGFVGL 287
           RDE++H  + I    +  +E      ++  ++ +  +L      E+AYA +   +  VG 
Sbjct: 193 RDEAVH-GYYIGYKCRKALERLDASARDAHRRYTYDLLETLYANEVAYAADLYDE--VGW 249

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            A     YM+F AN+    +G EP+F  +E
Sbjct: 250 TA-EVVSYMRFNANKALANLGYEPMFPVSE 278


>gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
 gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 127/298 (42%), Gaps = 23/298 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  D+ +W     L+ +ER + K+ LG     ++  ANN + ++     N + 
Sbjct: 34  WLPEEISVSKDVKVWSE---LSPEERNLYKKVLGGLTLLDTKQANNGIPSMMSLTDNLQR 90

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL-QYTQTLS 170
           +  L      E +H+ ++  I T+L    +  E+F      P++  KA   L QY  T  
Sbjct: 91  KAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIVLAQYENT-- 148

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      D+  L       V  E   FY+GF   L L    KM+   E    I+RD
Sbjct: 149 ----------DDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGEIISLILRD 198

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ESLH  +   +  +I  +      KE++ K   +       EI Y + T+ +G  GL A 
Sbjct: 199 ESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTN-TIYEG-TGL-AD 255

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
               ++++ ANR    +G +   +    NP   ++ +    K  +FF T+   YQ+G 
Sbjct: 256 EVINFLKYNANRAMENLGYDNRLEVDPVNPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312


>gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
 gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1]
          Length = 310

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 50/293 (17%)

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNPECRQYLLRQAFEEAV 126
           K  + LT +E    K    F A+++ L+  +I  ++ ++ H    + + Y   Q   E V
Sbjct: 42  KDVDLLTPEELDFYKLVFAFLAAADDLINLDIGNLMTLFLH---KDIQHYYAEQIRIETV 98

Query: 127 HSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWA--LQYTQTLSSPSFTTGT 178
           HS T  Y +  + L +G+L    R V      P+I  K +W   +Q    L+ P      
Sbjct: 99  HSRT--YSLVQMILFKGDLHARDRYVTEAIKDPAIKKKIDWLNRVQVETDLTLP------ 150

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    + ++  ++ EG++F   FA I  L R N  V + +    I RDE++H    
Sbjct: 151 ---------EKYILMILLEGIFFVASFAAIAFLRRRNIFVVMCQSNDLISRDEAVHTTAS 201

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQ 294
             + N         W  + ++ S   +H    EA  +E  +     P+    ++  + + 
Sbjct: 202 CRIYNN--------WLGDHKKPSAKRIHQLFKEAIEIECNFLASRAPQASRLIDLEAIQS 253

Query: 295 YMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRVTEY 343
           ++++  +R    IG+  +F   E P    FP     ID  K  NFFE R T Y
Sbjct: 254 FVRYSGDRLLTAIGVPTIFD--EPPPDPSFPLTLMSID--KNVNFFEHRSTAY 302


>gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
 gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
          Length = 147

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N +  +     Y  RDE LH +F   + +        L  K  Q++   ++ +A  +E  
Sbjct: 8   NTISSVFRLINYFFRDEGLHRDFACLLYSM-------LQNKLTQERIFEIIKDAVCIEQE 60

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +  E +P   +G+N     QY++F+A+    ++G + L+   +NPF +M E I +  + N
Sbjct: 61  FLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYN-VKNPFDFM-ENISIDGKTN 118

Query: 335 FFETRVTEYQQ 345
           FFE RV+EYQ+
Sbjct: 119 FFEKRVSEYQR 129


>gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 325

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 33/278 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + +
Sbjct: 25  TWEK---LTQQFWLDTRIPISNDLKNWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   + N +    L    F E+VH+ ++  I  +L        N   E+ +I   A  
Sbjct: 80  AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADT 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  + TGT    +       +  V  E   FY+GF   L     NKM+ 
Sbjct: 132 NEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    QI      L  +E  Q     +L+E    E  Y HE
Sbjct: 185 VAEIIKLIIRDESVHGTY-IGYKFQIGFNKLPLAEQESLQSWMYDLLYELYENEEKYTHE 243

Query: 279 TMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
                    +    EQ + F+   AN+    +G EP+F
Sbjct: 244 LYD------DLGWSEQVLTFLRYNANKALMNLGQEPMF 275


>gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 326

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 23/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +  E  
Sbjct: 15  PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 72

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +YR+   PE        A  E  H   + +++  LGL+E     M+ ++  I
Sbjct: 73  V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 126

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
               N  ++Y +     SF         EF+  L +F +  E +  +  F  ++S  +  
Sbjct: 127 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 180

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF ++ +T+  +A   E  
Sbjct: 181 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAFEAECG 240

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328
                  +G +  ++  + E Y++   N     +GLEP   Y  NP       W    I 
Sbjct: 241 ILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 298

Query: 329 LKKEKNFFETRVTEYQQ 345
             KE +FF  R T+Y +
Sbjct: 299 STKETDFFNKRSTDYSK 315


>gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 325

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 27/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +  E  
Sbjct: 14  PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVN 71

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +YR+   PE        A  E  H   + +++  LGL+E     M+ ++  I
Sbjct: 72  V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEI 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
               N  ++Y +     SF         EF+  L +F +  E +  +  F  ++S  +  
Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHK 179

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A   E  
Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERG 239

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEV 326
                  +G +  +   + E Y++   N     +GLEP       L K TE    W    
Sbjct: 240 ILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETE----WFDIE 295

Query: 327 IDLKKEKNFFETRVTEYQQ 345
           I   KE +FF  R T+Y +
Sbjct: 296 ILSTKETDFFNKRSTDYSK 314


>gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
          Length = 322

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 28/299 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTDDER   KR L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  KA+  ++    L 
Sbjct: 82  KAVYAFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADKIIENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHETMPKGFVG 286
           ES+H  F GID    ++ E   L   E QQ  + M   L +    E++Y H  M    +G
Sbjct: 195 ESIHGVFTGIDA-QSLRNE---LSENEKQQADKEMYVLLEDLYSNEVSYTH--MLYDDIG 248

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
           L       Y+++  N+    +G +P F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 249 L-TEDVLNYVKYNGNKALSNLGFDPYFE--EKDFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           linens BL2]
          Length = 326

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT++E+ +  R        +++      +++     
Sbjct: 34  TGNFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAV 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     +   AF E+VH+ ++  I ++L   +   E F   RE   + +KA+  L Y +
Sbjct: 91  TPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYR 150

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 151 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 195

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +E+     K E +  +  ++ E    E+AY H+      VG
Sbjct: 196 IRDEAVH-GYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLYDS--VG 252

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L A  C+ ++ + AN+    +G E +F
Sbjct: 253 L-AEDCKMFLHYNANKALMNLGYEAMF 278


>gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
          Length = 310

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 50/293 (17%)

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNPECRQYLLRQAFEEAV 126
           K  + LT +E    K    F A+++ L+  +I  ++ ++ H    + + Y   Q   E V
Sbjct: 42  KDVDLLTPEELDFYKFVFAFLAAADDLINLDIGNLMTLFPH---KDIQHYYAEQIRIETV 98

Query: 127 HSHTFQYIITSLGLDEGELFNMYREV------PSITAKANW--ALQYTQTLSSPSFTTGT 178
           HS T  Y +  + L +G+L    R V      P+I  K +W   +Q    L+ P      
Sbjct: 99  HSRT--YSLVQMILFKGDLHARDRYVTEAIKDPAIKKKIDWLNRVQVETDLTLP------ 150

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    + ++  ++ EG++F   FA I  L R N  V + +    I RDE++H    
Sbjct: 151 ---------EKYILMILLEGIFFVASFAAIAFLRRRNIFVVMCQSNDLISRDEAVHTTAS 201

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQ 294
             + N         W  + ++ S   +H    EA  +E  +     P+    ++  + + 
Sbjct: 202 CRIYNN--------WLGDHKKPSAKRIHQLFKEAIEIECNFLASRAPQASRLIDLEAIQS 253

Query: 295 YMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRVTEY 343
           ++++  +R    IG+  +F   E P    FP     ID  K  NFFE R T Y
Sbjct: 254 FVRYSGDRLLTAIGVPTIFD--EPPPDPSFPLTLMSID--KNVNFFEHRSTAY 302


>gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 376

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 39/344 (11%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D  Q  P+ +    EK LS     W P E+ + 
Sbjct: 11  NNQLLEPMFLGQT-VNV-------ARYD-QQKYPI-FEELIEKQLSF---FWRPEEIDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF
Sbjct: 58  RDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSPSF----TTG 177
            E +HS ++ +II ++  D   +F+       I  +A + +  Y   +   S+      G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDEG 174

Query: 178 TKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T   + +          + L++  +     E + FY  FA   +      M G A+  + 
Sbjct: 175 THQVNGKTTVVNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKL 234

Query: 227 IMRDESLHL---NFGIDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           I RDE+LHL      +D++   K ++P +    +E QQ+   +   A   E  +A     
Sbjct: 235 IARDEALHLMGTQHMLDLMRSGK-DDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            G  +GLN     QY++++ N R   + L+  F    NP PW++
Sbjct: 294 DGSMIGLNQDILCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWIN 337


>gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
 gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
          Length = 322

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 28/299 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTDDER   KR L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  KA+  ++    L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADKIIENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHETMPKGFVG 286
           ES+H  F GID    ++ E   L   E QQ  + M   L +    E++Y H  M    +G
Sbjct: 195 ESIHGVFTGIDA-QSLRNE---LSENEKQQADKEMYVLLEDLYSNEVSYTH--MLYDDIG 248

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
           L       Y+++  N+    +G +P F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 249 L-TEDVLNYVKYNGNKALSNLGFDPYFE--EKDFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus
           brevis NBRC 100599]
 gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus
           brevis NBRC 100599]
          Length = 316

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 35/300 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+ DD   W     L+  ER   K+ LG     +++     +  I  H+   + 
Sbjct: 26  WTDDEIPLSDDKMAWME---LSATERDTYKKVLGGLTLLDTVQGGVGMPKIMEHVDGLQR 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E +H+ ++  I T+L   E    +F+     P +  KA    +  Q +  
Sbjct: 83  KAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALISKRYQEIEK 142

Query: 172 PSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           P              +DL+   V  V  E   FY+GF   L L    KM    E    I+
Sbjct: 143 P--------------KDLYMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGEIIDLIV 188

Query: 229 RDESLH-LNFGI---DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           RDES+H L  G+   +V   + +       +E       +LHE    E AY      +  
Sbjct: 189 RDESIHGLYVGVLAQEVYQGLSVVEQTAAIEEL----YALLHELQENEEAYTTSLYTE-- 242

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
           +GL A     Y+++ AN+    +GL+PLF   E NP   ++ +    K+ +FF  +   Y
Sbjct: 243 IGL-ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPIV-LNGIRTQTKQHDFFSKKGNGY 300


>gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
 gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
          Length = 376

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 24/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W PTE+ M  D   +   + L+D  + +  +NL   +  +S+      L +  H+S+   
Sbjct: 49  WRPTEIDMSKDSIQF---HQLSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTL 105

Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY------- 165
             ++      E  +HS ++ +++ ++  +  E+F+     P I  +A    +Y       
Sbjct: 106 ENFITAWTMVEGTIHSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLE 165

Query: 166 TQTLSSPSFTTGTKDADQEFLQDL-----FVFYVV--FEGMWFYTGFAQILSLGR-ANKM 217
           +  LS+  F    +      L  L        + +   E + FY  F    S    +  M
Sbjct: 166 SDKLSAMKFLNLDESVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE+LHL     +I+  Q   ++P +    K  + K+ ++  E    E 
Sbjct: 226 EGSAKIMKFIARDENLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEK 285

Query: 274 AYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A   M  K   GLN      Y++++A+ R    GL   +   +NP PW+++
Sbjct: 286 EWAEYLMGDKSLNGLNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTK 338


>gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500]
          Length = 1292

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W+ K  L D+ER +I   LGFF S   ++  NI+      +  PE R +   Q
Sbjct: 60  LLNDVRDWQCK--LDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E + S  +  +I +   D  E   +FN    +P +  K  W L+      S      
Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMNNSKS------ 171

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                   L +  + +   E + +   F  IL   + + M  ++E Y +I+ +E  H  F
Sbjct: 172 --------LAERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223

Query: 238 G 238
           G
Sbjct: 224 G 224


>gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae L20]
 gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 23/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +  E  
Sbjct: 14  PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 71

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +YR+   PE        A  E  H   + +++  LGL+E     M+ ++  I
Sbjct: 72  V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
               N  ++Y +     SF         EF+  L +F +  E +  +  F  ++S  +  
Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 179

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A   E  
Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAFEAECG 239

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328
                  +G +  ++    E Y++   N     +GLEP   Y  NP       W    I 
Sbjct: 240 ILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 297

Query: 329 LKKEKNFFETRVTEYQQ 345
             KE +FF  R T+Y +
Sbjct: 298 STKETDFFNKRSTDYSK 314


>gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           LF82]
 gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520]
          Length = 380

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 29/297 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +K  L D ER +   NL +    +S+   +    +   +S PE 
Sbjct: 49  WRPEEVDISSDRIDFNTK--LRDHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REV--PSITAKANWALQYTQT 168
             ++   +F E +HS ++ +II  +  D   +F+      E+   +I+  A +   Y  T
Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMT 166

Query: 169 LSSPSFTTGTKDADQEFLQD-----------LFVFYV---VFEGMWFYTGFAQILSLGRA 214
               S   G K+ ++ ++ +           LF   V     E + FY  FA   + G  
Sbjct: 167 CERQSL--GEKEFERLYVNEYGWEPYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGER 224

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATL 270
             + G  +  ++I RDE+LH      +I  ++     L  KE       ++++       
Sbjct: 225 KLLEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAE 284

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325
            E+ +A      G  +GLNA   + Y+++  N   +++GL+ LF + T +P  WM++
Sbjct: 285 QEMNWADYLFKDGSMIGLNADILKTYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNK 341


>gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 321

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 31/298 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+ DD   W +   L+D E+    + LG     +++     +  I  H+   + 
Sbjct: 29  WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170
           +  L   A  E +H+ ++  I T+L   E E+  ++R   E P +  KA    QY   + 
Sbjct: 86  KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144

Query: 171 SPSFTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           +P              +DL++     V+ E   FY+GF   L L    KM    E    I
Sbjct: 145 TP--------------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGEIIDLI 190

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFVG 286
           +RDES+H  +   +  +I  E      ++  Q    +L      E  Y  +   P G V 
Sbjct: 191 LRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYTPIGLV- 249

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  +   Y
Sbjct: 250 ---DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGNGY 303


>gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium
           tuberculosis str. Erdman]
          Length = 321

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 137/339 (40%), Gaps = 51/339 (15%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+LL  K    WE+      N W+P ++P+ +DLA W++ +       + +   L    +
Sbjct: 15  NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149
           +++ V     +A+      P     L   AF E+VH+ ++  I ++L   +   + F+  
Sbjct: 72  AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            + P +  KA   + Y +   + +  +                 V+ E   FY+GF   +
Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDAQAQRSS----------------VMLESFLFYSGFYLPM 172

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262
                 K+   A+  + I+RDE++H  +       G+  +   +  +   +T E      
Sbjct: 173 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 226

Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320
            +LH     EI YAH+   + G+     P    YM++ AN+    +G +P F + T    
Sbjct: 227 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 281

Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352
           P +   +D    +N  FF    + Y  G      +  WD
Sbjct: 282 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320


>gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
 gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
          Length = 326

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 146/340 (42%), Gaps = 35/340 (10%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KR N+ +KR+         + P +Y    E   +  +++W+ TE     D+  +++   +
Sbjct: 2   KRRNLFEKRL--------NIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--I 51

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TD ER ++ R +   +  E  V       +YR+   PE        A  E  H   + ++
Sbjct: 52  TDHERHVLTRAMLAISQVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFL 110

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +  LGL+E     M+ ++  I    N  ++Y +     SF         EF+  L +F +
Sbjct: 111 LEKLGLNE-----MFSQIQDIEPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSL 159

Query: 195 VFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
             E +  +  F  ++S  +  N   GI+   +   ++E +H  FGI +   ++ E+  L+
Sbjct: 160 FVEHISLFGQFLIMMSFNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ---IGLE 310
           T  F ++ +T+ ++A   E         +G   L+  S E  + +I +R  +    +GLE
Sbjct: 220 TPAFFEELQTLANQAFEAEKGILDWIFEEG--DLSFISKETVLNYIKSRYNNSLVTLGLE 277

Query: 311 PLFKYTENP-----FPWMSEVIDLKKEKNFFETRVTEYQQ 345
           P   +  NP       W    I   KE +FF  R T+Y +
Sbjct: 278 P--PHNINPELLKETAWFDIEILSTKETDFFNKRSTDYSK 315


>gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
 gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
          Length = 322

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 50/339 (14%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+LL  K    WE+      N W+P ++P+ +DLA W++ +       + +   L    +
Sbjct: 15  NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149
           +++ V     +A+      P     L   AF E+VH+ ++  I ++L   +   + F+  
Sbjct: 72  AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            + P +  KA   + Y +   +      +               V+ E   FY+GF   +
Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262
                 K+   A+  + I+RDE++H  +       G+  +   +  +   +T E      
Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227

Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320
            +LH     EI YAH+   + G+     P    YM++ AN+    +G +P F + T    
Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 282

Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352
           P +   +D    +N  FF    + Y  G      +  WD
Sbjct: 283 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 325

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 27/319 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +  E  
Sbjct: 14  PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVN 71

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +YR+   PE        A  E  H   + +++  LGL+E     M+ ++  I
Sbjct: 72  V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEI 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
               N  ++Y +     SF         EF+  L +F +  E +  +  F  ++S  +  
Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHK 179

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A   E  
Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERG 239

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEV 326
                  +G +  +   + E Y++   N     +GLEP         K TE    W    
Sbjct: 240 ILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETE----WFDIE 295

Query: 327 IDLKKEKNFFETRVTEYQQ 345
           I   KE +FF  R T+Y +
Sbjct: 296 ILSTKETDFFNKRSTDYSK 314


>gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 325

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 39/281 (13%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + +
Sbjct: 25  TWEK---LTQQFWLDTRIPISNDLKTWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   + N +    L    F E+VH+ ++  I  +L        N   E+ +I   A  
Sbjct: 80  AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKTEIEAIFDWADT 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  + TG+    +       +  V  E   FY+GF   L     NKM+ 
Sbjct: 132 NEFLQYKANRINGIYQTGSPLQKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184

Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           +AE  + I+RDES+H   + +   +  NQ+  E       E Q     +L+E    E  Y
Sbjct: 185 VAEIIKLIIRDESVHGTYIGYKFQIGFNQLPAEEK----SELQSWMYDLLYELYENEEKY 240

Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
            H+         +    EQ + F+   AN+    +G EP+F
Sbjct: 241 THQLYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275


>gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis
           str. Illinois]
 gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis
           str. Illinois]
          Length = 330

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDER---LMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           W+  E+P+  D  +W+++  LT+ E+   + +  +L    + +  +  N +      L  
Sbjct: 37  WVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRICLAVPDLPT 94

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
               Q++   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  + Y + 
Sbjct: 95  KAVLQFM---AMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIVVSYYEN 151

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +            DQE L    V  V  E   FY+GF  +L L     M+   E    I+
Sbjct: 152 IK-----------DQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGEIINLII 200

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +   P   VG 
Sbjct: 201 RDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSPINLVG- 259

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                 Q++++ AN+    + LE  +  TEN   P +   ++   K  +FF T+   Y
Sbjct: 260 ---EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIFNGLNTSTKNHDFFSTKGNGY 314


>gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           amyloliquefaciens DSM 7]
          Length = 327

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 34/312 (10%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y       W+P E+ +  DL  WK+   L   E+    R L      ++   N  +  I 
Sbjct: 25  YAQNVKQFWLPEEISLNGDLLSWKA---LGPAEQTTYMRGLAGLTLLDTEQGNTGMPIIA 81

Query: 106 RHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
           +H++  + +  L   A  E AVH+ ++  I  +L   E   E+F   +  P +  KA   
Sbjct: 82  KHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKA--- 138

Query: 163 LQYTQTLSSPSFTTG----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                     +  TG     K+ D   L    V  V  E   FY+GF   L      K+ 
Sbjct: 139 ----------ALITGLYRDIKEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLT 188

Query: 219 GIAEQYQYIMRDESLH-LNFGIDVINQIKIENP--HLWTKEFQQKSRTMLHEATLLEIAY 275
              E    I+RDE++H +  G+        ++P   L  ++F  +  T L++    E+AY
Sbjct: 189 SSGEIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDN---EVAY 245

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKN 334
             +      VGL     ++++++ AN+    +G +P F+  E P P +   ++ K K  +
Sbjct: 246 TEDLYDA--VGLTH-DVKRFLRYNANKALQNLGFDPYFE-EERPNPIVMNGLNTKTKSHD 301

Query: 335 FFETRVTEYQQG 346
           FF  +   Y++ 
Sbjct: 302 FFSQKGNGYKKA 313


>gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1]
 gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1]
 gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1]
 gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1]
 gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type
           1.1]
          Length = 314

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 50/307 (16%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110
           N W+ TE P+ DD    K    L+  E    +    F ++++ LV  N+ L     L + 
Sbjct: 35  NRWLETEFPLADDA---KDVARLSGAELEFYRFLFAFLSAADDLV--NVNLGDLSELFTQ 89

Query: 111 PECRQYLLRQAFEEAVHSHTFQYI---------ITSLGLDEGELFNMYREVPSITAKANW 161
            +   Y + Q   E VHS  +  I         +   G  EG L +     P++  K +W
Sbjct: 90  KDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGD-----PAVRRKVDW 144

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             +              + A  E + + +V  ++ EG++F + FA I  L   N  V   
Sbjct: 145 LER--------------RVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTC 190

Query: 222 EQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +    I RDE++H      +  N +  E P         +   +  EA  L  A      
Sbjct: 191 QTNDLISRDEAVHTAASCCIFDNYLGGERPP------PARIYELFREAWKLS-ASLFGCA 243

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFF 336
           P+G   L+  +   Y+++ A+R    I L PLF      T+ P   M+     +K  NFF
Sbjct: 244 PRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPLALMTA----EKHTNFF 299

Query: 337 ETRVTEY 343
           E R T Y
Sbjct: 300 ERRSTNY 306


>gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit 1
 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1
           [Mycobacterium tuberculosis H37Ra]
 gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1
           [Mycobacterium tuberculosis F11]
 gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis W-148]
 gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 50/339 (14%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+LL  K    WE+      N W+P ++P+ +DLA W++ +       + +   L    +
Sbjct: 15  NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149
           +++ V     +A+      P     L   AF E+VH+ ++  I ++L   +   + F+  
Sbjct: 72  AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            + P +  KA   + Y +   +      +               V+ E   FY+GF   +
Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262
                 K+   A+  + I+RDE++H  +       G+  +   +  +   +T E      
Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227

Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320
            +LH     EI YAH+   + G+     P    YM++ AN+    +G +P F + T    
Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 282

Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352
           P +   +D    +N  FF    + Y  G      +  WD
Sbjct: 283 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 325

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 23/317 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +  E  
Sbjct: 14  PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 71

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +YR+   PE        A  E  H   + +++  LGL+E     M+ ++  I
Sbjct: 72  V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
               N  ++Y +     SF         EF+  L +F +  E +  +  F  ++S  +  
Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 179

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A   E  
Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAFEAECG 239

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328
                  +G +  ++    E Y++   N     +GLEP   Y  NP       W    I 
Sbjct: 240 ILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 297

Query: 329 LKKEKNFFETRVTEYQQ 345
             KE +FF  R T+Y +
Sbjct: 298 STKETDFFNKRSTDYSK 314


>gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis
           KI3806]
 gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis]
          Length = 330

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 28/298 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDER---LMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           W+  E+P+  D  +W+++  LT+ E+   + +  +L    + +  +  N +      L  
Sbjct: 37  WVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRICLAVPDLPT 94

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
               Q++   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  + Y + 
Sbjct: 95  KAVLQFM---AMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIVVSYYEN 151

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +            DQE L    V  V  E   FY+GF  +L L     M+   E    I+
Sbjct: 152 IK-----------DQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGEIINLII 200

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +   P   VG 
Sbjct: 201 RDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSPINLVG- 259

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                 Q++++ AN+    + LE  +  TEN   P +   ++   K  +FF T+   Y
Sbjct: 260 ---EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIFNGLNTSTKNHDFFSTKGNGY 314


>gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Roseovarius sp. HTCC2601]
          Length = 326

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 24/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT++ER +  R        +++  +    A+      P
Sbjct: 36  NFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGLTLLDTIQNSVGAPAMMPDCLTP 92

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L    +  E F    E P + AKA   L+     
Sbjct: 93  HEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAVLE----- 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                 T   +AD    +   VF    E   FY+GF   +      K+   A+  + I+R
Sbjct: 148 ------TYAPEADPLKRKIASVF---LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      +++E+P    +E +  +  +L E   +E  Y  E      +GL 
Sbjct: 199 DEAVHGYYIGYKFQRGLELESPER-RQELKDYAFGLLFELYDIEARYTEELYDG--IGLT 255

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               + ++ + AN+    +G E LF
Sbjct: 256 E-EVKAFLHYNANKALQNLGFEALF 279


>gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
 gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
          Length = 296

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 18/205 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111
           W P E+    D   WK+   LT D++ +I +    F + E  V  ++ L + R +++   
Sbjct: 31  WDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAGEEAVTRDL-LPLIRVVASEGR 86

Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    FEEA H+ +F+  +  +    G+L        +I  K N+   + + L 
Sbjct: 87  LEEEMYLTTFLFEEAKHTESFRLFLDEVAEYRGDL--------AIYHKENYKKVFYEYLP 138

Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIM 228
             +      D   E   +  V Y ++ EG+   TG+     +LGR  KM G+ +  +Y+ 
Sbjct: 139 Q-AMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSNALGRQGKMPGLLKAVEYLK 197

Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253
           RDES H+ +G  +++++  EN ++W
Sbjct: 198 RDESRHIGYGTYLLSRLIAENENVW 222


>gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
          Length = 329

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +   +  
Sbjct: 15  EIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAISQI 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E  V       +Y +   PE           E  H   + +++  LGL+E  +F   R+ 
Sbjct: 73  EVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLNE--MFLNVRQY 129

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            +I A+    ++Y +     +F      + Q+F+  L +F +  E +  ++ F  ++S  
Sbjct: 130 KAIMAR----IEYME-----AFMRRKDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMSFN 180

Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
           +  N   GI+   +   ++E +H  FGI + + ++ E P L+T  F  + + +  +A   
Sbjct: 181 KHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAFTA 240

Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSE 325
           E    +     G +  L+  + E Y+    N     +GLEP   Y  NP       W   
Sbjct: 241 EKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEP--AYNINPEQLKETEWFDI 298

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318


>gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 317

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 26/276 (9%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  WK    L+  E+ ++K+ +G  A  ++L +   
Sbjct: 18  FVWDK---ATAQFWLDTRVPVSNDLLEWKK---LSTMEKEIVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           + A+ +H    + R  L    F E++H+ T+  I+ SL        N ++++  I    N
Sbjct: 72  LYALKKHARTQKERAVLSNFMFMESIHAKTYGTILISL--------NTFKDIEEIYDWMN 123

Query: 161 W--ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
               +Q+     +  +  GT    +       V  V  EG+ +Y+ F   L     NK+ 
Sbjct: 124 NDPMMQFKAEKINNIYQNGTPIQVK-------VASVFLEGILYYSNFFIPLWYRGQNKLA 176

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +AE  + ++RDES+H  +      Q   E      + F Q   + L E    E A+  E
Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEE 236

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              +  +GL A   + ++++ AN+    +G    F+
Sbjct: 237 LYTE--IGL-AEDIKTFVKYNANKSLQNMGFGIYFE 269


>gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
 gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
          Length = 326

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 39/342 (11%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           KR N+ +KR+         + P +Y    E   +  +++W+ TE     D+  +++   +
Sbjct: 2   KRRNLFEKRL--------NIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--I 51

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TD ER ++ R +   +  E  V       +YR+   PE        A  E  H   + ++
Sbjct: 52  TDHERHVLTRAMLAISQVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFL 110

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +  LGL+E     M+ ++  I    N  ++Y +     SF         EF+  L +F +
Sbjct: 111 LEKLGLNE-----MFSQIQDIEPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSL 159

Query: 195 VFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
             E +  +  F  ++S  +  N   GI+   +   ++E +H  FGI +   ++ E+  L+
Sbjct: 160 FVEHISLFGQFLIMMSFNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ---IGLE 310
           T  F ++ +T+  +A   E         +G   L+  S E  + +I +R  +    +GLE
Sbjct: 220 TPAFFEELQTLASQAFEAEKGILDWIFEEG--DLSFISKETVLNYIKSRYNNSLVTLGLE 277

Query: 311 P-------LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           P       L K T     W    I   KE +FF  R T+Y +
Sbjct: 278 PPHDINPELLKET----AWFDIEILSTKETDFFNKRSTDYSK 315


>gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 354

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 32/299 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W  TE  + DDL       G   +E+   +    F ++++ LV  NI  +L+++   +
Sbjct: 75  NRWTETEFVIADDL----EDVGKLKNEKNFYRFLFTFLSAADDLVNLNIDSLLSLF---T 127

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSITAKANWALQY 165
             +   Y   Q   EAVHS  +  I   L  ++     E        P+I +K  W  + 
Sbjct: 128 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAILSKLEWLERR 187

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               +S              + + ++  ++ EG++F   FA I  L   N  V   +   
Sbjct: 188 VAECTS--------------IAEKYILMILIEGIFFTASFAAIAYLRVNNLFVVTCQINN 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H+     +      +N     K    +  T+  EA  +E  +     P+   
Sbjct: 234 LISRDEAIHVEASCCIF-----KNYLAGPKPTTARIHTLFKEAVTVECEFLRTAAPRTSN 288

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            +N  +   Y+++ A+R    + + P++   + P  +   ++      NFFE R T Y 
Sbjct: 289 IINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERRNTAYS 347


>gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
          thailandensis MSMB43]
          Length = 70

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49
          A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ 
Sbjct: 33 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAG 70


>gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
 gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
          Length = 376

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 25/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +   N L++ E+ +  +NL + +  +S+      L     +S+   
Sbjct: 48  WRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +I+ +L +D   +F+       I A+A    QY        
Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIMARATSVTQYYDNLIKEL 164

Query: 166 ------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                 TQ++ SP          +E L          E + FY  FA   S G    M G
Sbjct: 165 KTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFYVSFACTFSFGERGIMEG 224

Query: 220 IAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEIAY 275
            A+  + I RDE LHL     +I   Q   ++  ++   K  + K+  +  E    E  +
Sbjct: 225 NAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLEHKAVQIFLEVAEQEKEW 284

Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323
           A + +    + GL+  S   Y+ ++   R    GL   E L    ++P PW+
Sbjct: 285 ARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNIGMKHPLPWI 336


>gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 376

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 24/292 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++    L   E+ +   N+ +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDISLDRIDYQ---ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   AF E +HS ++ +II ++  D   +F+       I  +A + A  Y   +   
Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMT 165

Query: 173 S----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           S    F  G    +         E  + L++  +     E + FY  FA   +      M
Sbjct: 166 SYFHLFGEGNHSINGKLVIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  + I RDE+LHL     ++N +++  ++P +     E Q  S  +   A   E 
Sbjct: 226 EGNAKIIRLIARDEALHLAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +A      G  +GLN     QY+++I N R   + L+  F    NP PW++
Sbjct: 286 DWASYLFRDGSMIGLNEEILCQYIEYITNIRMQAVLLDLPFATRSNPIPWIN 337


>gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 318

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 29/199 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A +  W+ T VP+ +DLA W+    L+  E+ +IK+ +G  A  ++L +   
Sbjct: 20  YVWDK---ATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKKVVGGLALLDTLQSEKG 73

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           V A+   +   +    L    F E++H+ ++  I+TSL             + SI    +
Sbjct: 74  VNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSLN-----------SIKSINEIYD 122

Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           W      +QY     +  + TG  +A Q+ +  +F+     EG+ +Y+ F   L    +N
Sbjct: 123 WMNNDERMQYKAKRINDIYKTG--NALQKKIASIFL-----EGILYYSNFFAPLWYRGSN 175

Query: 216 KMVGIAEQYQYIMRDESLH 234
           K+  +AE  + I+RDES+H
Sbjct: 176 KLANLAELIKLIIRDESVH 194


>gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
 gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
          Length = 321

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 126/302 (41%), Gaps = 39/302 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+ DD   W +   L+D E+    + LG     +++     +  I  H+   + 
Sbjct: 29  WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170
           +  L   A  E +H+ ++  I T+L   E E+  ++R   E P +  KA    QY   + 
Sbjct: 86  KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144

Query: 171 SPSFTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           +P              +DL++     V+ E   FY+GF   L L    K+    E    I
Sbjct: 145 TP--------------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGEIIDLI 190

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML-----HEATLLEIAYAHETMPK 282
           +RDES+H  +   +  +I  E      ++  Q    +L     +E    E  YA    P 
Sbjct: 191 LRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYA----PI 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
           G V       + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  +  
Sbjct: 247 GLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301

Query: 342 EY 343
            Y
Sbjct: 302 GY 303


>gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus
           granularis]
          Length = 141

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144
           L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  + 
Sbjct: 3   LAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAVQR 62

Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             LFN    +P +T KA WAL +   +SS S   GT+           V +   EG++F 
Sbjct: 63  DYLFNAVETMPCVTKKAQWALDW---ISSDSADFGTR----------IVAFAAVEGIFFS 109

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
             FA I  L +   M G+    + I RDE LH
Sbjct: 110 GSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141


>gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 319

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAKIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + +N+ + E+   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDLLYQLYENEENYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDQVGWTDEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus]
          Length = 103

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  T 
Sbjct: 1   EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           NPF +M E I L+ + NFFE RV++YQ+
Sbjct: 60  NPFDFM-ENISLEGKTNFFEKRVSDYQR 86


>gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 376

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 26/293 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +   + L  +E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEIDLSKDRIDF---DNLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++   +F E +HS ++ +II ++  +   +F+      +I  +A + ++ Y + +   
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRIT 165

Query: 173 SF----TTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           ++      G    +++ ++              +   V E + FY  FA   +      M
Sbjct: 166 AYWHLLGEGNHKINEKKVEINLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-----EFQQKSRTMLHEATLLE 272
            G A+  + I RDE+LHL  G   I  I     +         E ++++  +   A+  E
Sbjct: 226 EGNAKIIRLIARDEALHLT-GTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQE 284

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             +A      G  +GLN     QY+++I N R H IG +  F+ T NP PW++
Sbjct: 285 KKWAKYLFQDGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFEKTSNPIPWIN 337


>gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 324

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 130/310 (41%), Gaps = 42/310 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LTD+E+ +  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   AF E+VH+ ++  I ++L     E+ + +R   E P++  KA   +QY 
Sbjct: 89  TPHEEAVLTNIAFMESVHAKSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAAIVMQYY 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D+   +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 148 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192

Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           I+RDE++H  +       G+ ++++ K        +E +  +  +L E    E+ Y  + 
Sbjct: 193 IIRDEAVHGYYIGYKYQRGLALVDEEK-------KQELKDYTYELLFELYDNEVEYTQDL 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
                VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF
Sbjct: 246 YDS--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALAPNADENHDFF 302

Query: 337 ETRVTEYQQG 346
               + Y  G
Sbjct: 303 SGSGSSYVIG 312


>gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 320

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 137/328 (41%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W +   LT +E+ +  R       
Sbjct: 13  NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGLTM 66

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P     L   AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 67  LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 125

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   LQY +              D+   +   V   + E   FY+GF   
Sbjct: 126 SEENPNLQRKAEIVLQYYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++++K         E +  +
Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVK-------RAELKDYT 223

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 224 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 281 PAILSALSPNADENHDFFSGSGSSYVIG 308


>gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3]
 gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3]
          Length = 353

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 35/301 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W  TE  + +DL        L+++E+   +    F ++++ LV  NI  +L ++    
Sbjct: 73  NRWTETEFVVAEDLG---DVAKLSEEEKNFYRFLFTFLSAADDLVNLNIDNLLGLFEQ-- 127

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT- 168
             +   Y   Q   EAVHS  +  II  +  D              +A+A    +Y Q+ 
Sbjct: 128 -KDIHHYYFEQECIEAVHSRAYS-IIQLMLFDNDS-----------SARA----KYVQSA 170

Query: 169 LSSPSFTTGTKDADQEFLQ-----DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L SP   +  +  D+  L+     + ++  ++ EG++F   FA+I  L   N  V   + 
Sbjct: 171 LESPVIQSKLEWLDRRILECTSIPEKYILMILTEGIFFSASFARIAYLRTNNLFVVTCQI 230

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
              I RDE++H+     +       N     K    + + +  EA  LE A+     P+ 
Sbjct: 231 NNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAFLRAAAPRD 285

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
              L+  S   Y+++ A+R    + + P++        +   ++      NFFE R T Y
Sbjct: 286 SRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNFFERRSTAY 345

Query: 344 Q 344
            
Sbjct: 346 S 346


>gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 351

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/316 (19%), Positives = 131/316 (41%), Gaps = 21/316 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   ++ Y       W   E+    D+  W + + +T DE+    R L  FAS++
Sbjct: 38  LFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNW-NDDKITKDEKEYFIRLLALFASND 96

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +   N+   +      PE + +   Q   + +H   +  +I SL  D+ +  +M+ E+ 
Sbjct: 97  -MDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVKDDEKRTSMFEEIK 155

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +T      ++Y ++          ++ D  F + L     V  G++  + +  +LS  +
Sbjct: 156 DLT-NIKEKIEYAKSW--------FENEDNLFGEKLIAEAAVL-GIFSLSAYVSVLSFQK 205

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              + G       ++RD  LH++F         +   HL  +   +  + ++ +A  +E 
Sbjct: 206 GGLIPGFVTGVDNMLRDRGLHVDFCC-------LMYAHLKNQIDSEIVQKIIVDAVEIEK 258

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
               + +P   V L      Q+++++A+      G E  +  T NP+ +M  V+ L    
Sbjct: 259 KSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT-NPYEFMENVV-LPGNT 316

Query: 334 NFFETRVTEYQQGAEL 349
           N     + + Q+ +E 
Sbjct: 317 NSLAKTIADAQKASEF 332


>gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
 gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
          Length = 378

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 131/312 (41%), Gaps = 35/312 (11%)

Query: 38  KYGWAWEKYLSACNNH-----WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---F 89
           +Y W     L + +       W P E+ M   +   KS   L +  +  IK NL F    
Sbjct: 27  RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLM 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            S ++   +NI++ +        C   L  QA+ E +HS ++ +II S+  +  ++F+ Y
Sbjct: 84  DSGQNRGLDNILIPLVTSSGLEGC---LKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEY 140

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E P I  + N  +   ++L     +    D ++  + +  +     EG+ FY  F    
Sbjct: 141 CEYPEIKTRINDEIDTYESLEG---SLEENDENKLKILEACLRIQFLEGVKFYVSFLTTY 197

Query: 210 SLGR----ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN----PHLWTKEFQQKS 261
            + +     NK+  + +  + I  DE +HL     ++  ++ E      HL+     +K+
Sbjct: 198 MINKYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSEQHQGFSHLFDDSLSRKA 257

Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
           R +  +    E+ +A   +  G + GL   + + +++F  + R  + G +P+        
Sbjct: 258 RKIAKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDRLKKCGFQPI-------- 309

Query: 321 PWMSEVIDLKKE 332
            W +   DL KE
Sbjct: 310 -WNAPKTDLVKE 320


>gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 183

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTT 176
            +PSI  KA WA ++    S  SF T
Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDT 178


>gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis]
          Length = 849

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 66/334 (19%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSA--------------CNNHWMPT-------EVP 60
           K +L+   D   + PLK    W +Y  A              C  H           +V 
Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEASRPSGQAPNDPLCMAHTTFWTTFWTAEDVD 616

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
              D   W+ +  L   ER  +   L + A+S+ L+ +N+V      +   E R +   Q
Sbjct: 617 FSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYAFQ 674

Query: 121 AFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTT 176
            F++ VH+     I+ +L    E +L  + R V   P+  AKA W  ++           
Sbjct: 675 LFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINR-------- 726

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 Q          ++  G+   TG A  L                 I RDE +H+ 
Sbjct: 727 ------QATAAAALPPLLLPRGLLPGTGHATDL-----------------ISRDEGVHVE 763

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
               + + ++       +K    +++ ++ EA   E A+    +P    GL A + E+Y+
Sbjct: 764 SAGVMYSLLR-------SKLTDSQAQGIVGEAVEAERAFVCGQLPLEATGLEAGAMEEYL 816

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           Q++ +R    +G  PL++   NP PW+ E I +K
Sbjct: 817 QYVGDRLLGALGHAPLYRVAANPLPWL-EGIAMK 849


>gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis]
 gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
 gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis biovar Microtus str. 91001]
 gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis]
 gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
          Length = 380

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 27/296 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +K  L + ER +   NL +    +S+   +    +   +S PE 
Sbjct: 49  WRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II  +  D   +F+       +     SI+++ +   + T
Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMT 166

Query: 167 ---QTLSSPSFT-------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              Q L    F         G     Q  L    V     E + FY  FA   + G    
Sbjct: 167 CARQHLGEDEFERLYVSEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKL 226

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA-- 274
           + G  +  ++I RDE+LH      +I  ++     L  K    +  + +++ T++++A  
Sbjct: 227 LEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQ-TMMDVAGQ 285

Query: 275 ---YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325
              +A      G  +GLNA   + Y+++  N    ++GL PLF +  ++P  WM++
Sbjct: 286 EMRWADYLFKDGSMIGLNADILKSYVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNK 341


>gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
 gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
          Length = 320

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ + + V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+ +I      
Sbjct: 76  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNK 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 128 NEFLQKKAKIINDIYENG--DALQKKIASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + +++ K +    W  +  +Q       +  +L
Sbjct: 181 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQLYENEENYTKSL 240

Query: 271 L-EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
             E+ +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 241 YDEVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 276


>gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
 gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
          Length = 367

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 18/299 (6%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y    +  W P EV +  D A + +   L+  E+ +   NL      +S+       A  
Sbjct: 43  YEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIYFSNLKRQTMLDSIQGAAPFEAFG 99

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
              S PE +  +L    +EA+HS ++ +I+ +   D G +F+   +V  I   A     Y
Sbjct: 100 PWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVQEIVDCAGQISVY 159

Query: 166 --------TQTLSSPSFTT-GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-AN 215
                      ++  +FT     +A + F + LF    + EG+ FY  FA   +  +  N
Sbjct: 160 YDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANSL-EGVRFYVSFACSWAFMQFLN 218

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH--LWTKEFQQKSRTMLHEATLLEI 273
           KM G A+  + I RDE  HL      +N++ + +P   +  +E + +   M  +    E 
Sbjct: 219 KMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFGIIREELRGEMTQMYVDVVNQEK 278

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLK 330
            +A+     G  +GLNA    Q + ++A  R   IG   P     +NP PW++E +D K
Sbjct: 279 EWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHPYPGQARKDNPVPWINEWLDNK 337


>gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 196

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+V      +   E + +   Q   E +HS  +  +I +L  D+ E   LFN   
Sbjct: 95  GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            +PSI  KA WA ++       S T+   DA    ++D  V
Sbjct: 155 NIPSIRKKALWAQKWI-----ASDTSSIPDALHCCVKDFLV 190


>gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 135

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   +         H +          ++ EA  +E  + 
Sbjct: 1   MPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVAIEQEFL 51

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+ + NFF
Sbjct: 52  SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109

Query: 337 ETRVTEYQQG 346
           E R   YQ+G
Sbjct: 110 ERREANYQKG 119


>gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 316

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 26/276 (9%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  WK    L+D E+ ++K+ +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAK 158
           + AI ++    +         F E++H+ T+  I+ SL    D   +++     P +  K
Sbjct: 72  LYAIKKNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFK 131

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A     Y Q   SP             LQ + V  +  EG+ +Y+ F   L     NK+ 
Sbjct: 132 AQRVNDYYQN-GSP-------------LQ-VMVASIFLEGILYYSNFFIPLWYRGQNKLA 176

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +AE  + ++RDES+H  +      Q   E       +FQ+     L E    E AY  E
Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEE 236

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
                 +GL     + ++++ AN+    +G    F+
Sbjct: 237 VYSD--IGLE-DDIKTFVKYNANKSLQNMGFGIYFE 269


>gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
 gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
          Length = 257

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 31/196 (15%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N++ PL     W+ Y     N W+  E+   DD   W+ K  LT+DER      L FF +
Sbjct: 80  NEISPLD---IWKMYKKTLANQWVVEEIESSDDGLDWEKK--LTNDERDFFSNVLAFFVA 134

Query: 92  SESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---EL 145
           S  ++  N+     R +S    PE + +   Q   + +HS T+  +I +   D+    +L
Sbjct: 135 SCGIINKNL----NRFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKL 190

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           FN    +P +  KA WAL++                  E  +   V  V FE ++F   F
Sbjct: 191 FNAIETIPCVKKKAEWALKWI----------------NESFEKRLVALVAFESIFFSGSF 234

Query: 206 AQILSLGRANKMVGIA 221
             I  L + + M G+ 
Sbjct: 235 RIISLLKKRSLMQGLT 250


>gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
 gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 326

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P ++P+ +D+  W +   LT +E+L+  R        +++      +++     
Sbjct: 32  VNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L   +   E F    E   +  KA   + Y Q
Sbjct: 89  TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENVHLQKKAQIVMDYYQ 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           ++DE++H  + I    Q  +E      + E Q  +  +L E    E+ Y H+      VG
Sbjct: 194 IKDEAVH-GYYIGYKFQRGLEKETAERREELQAYAYELLDELYENEVQYTHDLYDG--VG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L A   ++++ + AN+    +GL+P+F
Sbjct: 251 L-AEDVKKFLHYNANKALMNLGLDPVF 276


>gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
 gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
          Length = 324

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 26/330 (7%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           DKR+        Q  P +Y    +   +   + W+  EV    D   + S   L   ER 
Sbjct: 5   DKRL--------QYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHSH--LNPAERT 54

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            ++ +L   A  E  V  +    +Y HL  PE        A  E  HS  +  ++  LG 
Sbjct: 55  AVRNSLLAIAQIEVAV-KSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGY 113

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +    F    EVP I  +    ++Y     S + +T T+    E+   L +F ++ E + 
Sbjct: 114 NSQ--FEKLVEVPVIRQR----IEYLSDALSNAKSTDTR----EYTISLILFSILIENVS 163

Query: 201 FYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            ++ FA ILS  R    M  ++    +   DE +H N GI +IN+I+ E P ++ +    
Sbjct: 164 LFSQFAIILSFTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATIT 223

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-- 316
           +   ++ E+  +E         +G +  ++      +M++ A+    +I L  LF  +  
Sbjct: 224 RVSNLVKESIEVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTE 283

Query: 317 -ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              P  W  E +      +FF  R  +Y +
Sbjct: 284 DNKPMLWFEEEVFANSLDDFFAKRPVDYTK 313


>gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1]
 gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1]
          Length = 313

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 27/283 (9%)

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  + LT+DE    K    F A+++ LV  N+   +       + + Y   Q   E VHS
Sbjct: 44  KDVDCLTEDECDFYKFVFCFLAAADDLVNVNLD-NLVTLFPQKDIQHYYAEQIRIETVHS 102

Query: 129 HTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
            T+  +      ++    + Y     +  +I  K +W             +    + D+ 
Sbjct: 103 RTYSAVQLVFFRNDAIARDRYVLEAVKDGAIRRKIDW------------LSRIQNEGDEL 150

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L + ++  ++ EG++F + FA I  L R +      +    I RDE++H      + N 
Sbjct: 151 TLPEKYILMILIEGIFFVSSFAAISYLRRHSIFQVTCQSNDLISRDETIHTTASCCIYNN 210

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
               +P    K   Q    +  EA  +E  +     PK    ++  + + +++F ANR  
Sbjct: 211 WLKGHPKPSVKRIHQ----LFKEAVEIECDFLVARAPKAARLIDIDAIQSFVRFTANRWL 266

Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQ 344
             IG+  ++   ++P P   +   ++ L+K  NFFE R T Y 
Sbjct: 267 SMIGVPTIY---DDPAPDPTFPLALMSLEKNVNFFEHRSTAYS 306


>gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 322

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  ++    L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  ++   +L +    E++Y H  M    +GL +
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEDLYANEVSYTH--MLYDDIGL-S 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
                Y+Q+  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 325

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 39/281 (13%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    +++ ER  +    G   + ++L + + +
Sbjct: 25  TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSEQERQTMNLVFGGLTTLDTLQSQDGM 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +    +N +    L    F E+VH+ ++  I  +L        N   E+  I   A +
Sbjct: 80  AQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKVEIEKIFEWADS 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NKM+ 
Sbjct: 132 NEFLQYKANRINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFYTPLYFLGHNKMLN 184

Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           +AE  + I+RDES+H   + +   +  N+I  E       E Q     +L+E    E  Y
Sbjct: 185 VAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEER----TELQSWMYDLLYELYENEEKY 240

Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
            HE         +    EQ + F+   AN+    +G EP+F
Sbjct: 241 THELYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275


>gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 327

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 39/281 (13%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    +++ ER  +    G   + ++L + + +
Sbjct: 27  TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSEQERQTMNLVFGGLTTLDTLQSQDGM 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +    +N +    L    F E+VH+ ++  I  +L        N   E+  I   A +
Sbjct: 82  AQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKVEIEKIFEWADS 133

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NKM+ 
Sbjct: 134 NEFLQYKANRINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFYTPLYFLGHNKMLN 186

Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           +AE  + I+RDES+H   + +   +  N+I  E       E Q     +L+E    E  Y
Sbjct: 187 VAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEER----TELQSWMYDLLYELYENEEKY 242

Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
            HE         +    EQ + F+   AN+    +G EP+F
Sbjct: 243 THELYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 277


>gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus
           castenholzii DSM 13941]
 gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941]
          Length = 295

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 118/263 (44%), Gaps = 28/263 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P+++    D+  W++   LTDDER ++ R    F + E  V  +++  +    +    
Sbjct: 33  WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89

Query: 114 RQYLLRQAF--EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
            + L   +F  EEA H+  F   +T +    G+L + +         AN+     + L  
Sbjct: 90  EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYH--------TANYRALIHEAL-- 139

Query: 172 PSFTTGTKDADQEFLQDL--FVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228
           P+     +D      Q +    + ++ EG+   TG+ A    L R N M G  +    + 
Sbjct: 140 PAAMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLK 199

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGL 287
           +DES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A +E +P G    
Sbjct: 200 QDESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACYEVVPFGL--- 256

Query: 288 NAPSCEQYMQFIAN---RRCHQI 307
              S + +MQF      RR  +I
Sbjct: 257 ---SHDDFMQFAMGQFERRLDRI 276


>gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 323

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 48/277 (17%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D+  WK    LT+DE+++  R    L    + ++ V   +++   R  
Sbjct: 32  NFWLPEKIPLSNDIQSWKQ---LTEDEQVLTTRVFTGLTLLDTIQNTVGAPVLMKDAR-- 86

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
             P     L   AF EAVH+ ++  I ++L              P I     WA +    
Sbjct: 87  -TPHEEAVLSNIAFMEAVHARSYSSIFSTLC-----------TTPQIDEAFRWAEE---- 130

Query: 169 LSSPSFTTGTKDADQEFLQDLF-----VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
             +P      K    ++LQD       +  V  E   FY+GF   +      K+   A+ 
Sbjct: 131 --NPLLQQKAKIILDDYLQDSGPLEKKIASVFLESFLFYSGFYLPMHWSSRAKLTNTADL 188

Query: 224 YQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
            + I+RDE++H          G   +++ + E       + + K+ ++L     +E  Y 
Sbjct: 189 IRLIIRDEAIHGYYIGYKFQLGYQELDEARQE-------QLKDKAYSLLLSLYDIECQYT 241

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                +  VGL     + ++ + AN+    +G E LF
Sbjct: 242 ESLYDQ--VGL-TEDVKHFLHYNANKALMNLGFEALF 275


>gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
 gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
          Length = 324

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 18/297 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ +EV    D   + S   L   ER  IK +L   A  E  V       IY H   PE 
Sbjct: 30  WVHSEVDFTADTQDFHSHLNLA--ERTAIKHSLLAIAQIEVAV-KTFWGDIYDHFPKPEF 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  A  E  HS  +  ++  LG ++   F    ++P I  + ++         S +
Sbjct: 87  NGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLLDIPVIKGRVDYL--------SNA 136

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232
                    + ++  L +F ++ E +  ++ FA ILS  R    M  ++    +   DE 
Sbjct: 137 LKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILSFTRFKGYMKNVSNIIAWTSVDEQ 196

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPS 291
           +H N GI ++N+IK E P  +++E  Q+ + ++  +  +E         +G +  +    
Sbjct: 197 IHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSIEVESQILDWIFEQGEIETIKKKD 256

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              +M++  +    +IG   ++  T     P  W  E +      +FF  R  +Y +
Sbjct: 257 LLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEEEVFANSLDDFFAKRPVDYTK 313


>gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus
           sp. JDR-2]
 gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2]
          Length = 318

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 27/266 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+ DD   W     ++D ER + K  LG     +++     +  I  H+   + 
Sbjct: 26  WTDEEIPLSDDKMDWME---MSDTERTVYKNVLGGLTLLDTIQGGVGMPKILEHVDGLQR 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKANWALQYTQTLSS 171
           +  L   +  E +H+ ++  I T+L   E        E+ +I    + N  LQ   TL S
Sbjct: 83  KAVLAFMSMMEQIHAKSYSSIFTTLASTE--------EIDAIFQWVETNEQLQKKATLVS 134

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            S+  G +   Q  L       V  E   FY+GF   L L    KM    E    I+RDE
Sbjct: 135 -SWYQGIETKQQ--LYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGEIIDLILRDE 191

Query: 232 SLH-LNFGI---DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           S+H L  G+   ++ NQ   E      ++ Q K        TL E    +       +GL
Sbjct: 192 SIHGLYVGVLAQELFNQFTPE------EQAQLKEEVFALLNTLYENEVVYTDNLYSPIGL 245

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                + Y+++ AN+    +G EP F
Sbjct: 246 QE-DVKAYVRYNANKALMNLGFEPYF 270


>gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
 gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
          Length = 321

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G F   +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P     + +     +L+E    E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G++PLF  T N
Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275


>gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 328

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 19/299 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE     D+  WK   GL+ D +   K+ LG     ++L ++  +  I  H+ + + 
Sbjct: 30  WIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHTGMPKIIDHIDSLQN 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      EA+H+ ++  I T++       ++F    +   +  KA    +Y +++  
Sbjct: 87  KAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQFKAQTIDKYYRSIDK 146

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
              T      D+E    L    V+ E   FY+GF   L L    +MV  A+  + I+ DE
Sbjct: 147 EDPT------DEELFMALGA-SVLLESFLFYSGFFLPLWLCGQGQMVASADIIKKIIADE 199

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +   I    P+   +E + +  T+L+E    E+ Y  E      VGL A  
Sbjct: 200 SIHGVFVGLIAQDIFRRIPN--KEEVKARFLTLLNELYENELKYTEEIYT--VVGLTA-E 254

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ++Y+++  N+    +G +P+F+  + NP   ++ +     + +FF  + T Y++  E+
Sbjct: 255 VKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFFSKKSTNYEKATEI 312


>gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 375

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 30/295 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   ++S   L   E+ +  RNL +    +S+ + +   A    +S PE 
Sbjct: 48  WRPEEIDISKDRIDYQS---LKLYEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEV 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----------WAL 163
             ++   +F E +HS ++ YII ++  D   +F+       I  +A             +
Sbjct: 105 ENWIETWSFSETIHSRSYTYIIRNIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLI 164

Query: 164 QYTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           +  QT          K      +E  + L++  +     E + FY  FA   +      M
Sbjct: 165 RLYQTFGEGIHKIHEKKVTVSLRELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELM 224

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR--TMLHEATLLEIA- 274
            G A+  + I RDE+LH+     +IN   I       KE  + S+   M+ +   L ++ 
Sbjct: 225 EGNAKIIKLIARDEALHVTGTQHMIN---IMQSSKEDKEMIEISKECLMICQKIFLNVSD 281

Query: 275 ----YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
               +A      G  +GLN    ++Y+ +I   R   IGL+       NP PW++
Sbjct: 282 QEKRWADYLFSNGNLIGLNKKILKEYIDYITEVRMRAIGLKKDLIKKINPIPWIN 336


>gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort]
 gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort]
          Length = 349

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 33/303 (10%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
           A  + W+P +  +  D++ W   N LTD E+   K+ L      ++  +   +  I  H 
Sbjct: 37  ATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGMSLIAHHE 93

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREV-PSITAKANWALQY 165
                 Q      F E++H+ ++ +I T+L L++    L N + E  P +  KA +   +
Sbjct: 94  PRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKKAQYIGYF 153

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            + L  P+ +T  +   +       V     E   FY+GF   L L     MV       
Sbjct: 154 YEKLEQPNPSTFDRYMAK-------VASAFLESALFYSGFYYPLLLSGQGVMVQSGTTIY 206

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET----MP 281
            I +DE+ H   G+ V    +++   L T+E Q K+  +++E  LLE+ Y +E     M 
Sbjct: 207 KITQDEAYH---GVGVGYTAQLDYQEL-TEEEQSKADALMYE--LLEVLYENEVSYSHML 260

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-----IDLKKEKNFF 336
              +GL      +Y+Q+  NR    +G +  F    NP P+   V     +D     +FF
Sbjct: 261 YDKLGLTEDVI-RYVQYNFNRALANLGFDDYF----NPEPFNPIVNNQTNVDKLSNADFF 315

Query: 337 ETR 339
            T+
Sbjct: 316 STK 318


>gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
 gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
          Length = 374

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 24/290 (8%)

Query: 54  WMPTEVPMQDDLALWKSK-NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           W P EV    DL L   + + + +  + +  +NL + +  +S+      +A     S+  
Sbjct: 49  WRPEEV----DLTLDSQEFDRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNS 104

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
              ++    F E +HS ++ +I+ +L  +   +F+      SI A+A    ++   L + 
Sbjct: 105 LENWITTWDFSETIHSRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAE 164

Query: 173 S-----FTTGTKDADQEFLQDLFVFYVVF---------EGMWFYTGFAQILSLGRANKMV 218
           +       T   D     +Q+  V   ++         E + FY  FA   +      M 
Sbjct: 165 TQKLNQLKTMNLDEAHILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIME 224

Query: 219 GIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIA 274
           G A+  + I RDE LHL     +I+  Q   ++P +   +   Q ++  +  +    E  
Sbjct: 225 GNAKVMKLIARDEQLHLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKE 284

Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           +AH    +G V GLNA    +Y++++A+ R   +GL   +   ++P PW+
Sbjct: 285 WAHSLFSQGTVPGLNAQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWI 334


>gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
 gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU028]
 gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU045]
          Length = 322

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  ++    L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIVENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  Q+   +L+E    E++Y H  +    +GL A
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-A 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis FRI909]
          Length = 322

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  ++    L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIVENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  Q+   +L+E    E++Y H  +    +GL A
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-A 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 DDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           arilaitensis Re117]
          Length = 324

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 25/270 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W +   LT+DE+L+  R        ++L      +++     
Sbjct: 32  VNNFWLPEKVPLSNDIQSWGT---LTEDEKLLTMRVFTGLTLLDTLQGTVGAVSLIPDAL 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E  ++  KA       Q
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENVNLQKKA-------Q 141

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            +   S+  G     ++    L       E   FY+GF   +      K+   A+  + I
Sbjct: 142 IIE--SYYHGEDPLKRKIASTL------LESFLFYSGFYLPMHWSSHAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +EN     K E +  +  +++E    E+ Y H+      VG
Sbjct: 194 IRDEAVH-GYYIGYKFQKGLENETEERKQELKDYTFELMYELYENEVQYTHDLYDP--VG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           L +   ++++ + AN+    +G E +F  T
Sbjct: 251 L-SEDVKKFLHYNANKALMNLGYEAMFPST 279


>gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 240

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252
            E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++  +++P + 
Sbjct: 68  LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMA 127

Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+
Sbjct: 128 EIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 187

Query: 311 PLFKYTENPFPWMS 324
             F+   NP PW++
Sbjct: 188 LPFQTRSNPIPWIN 201


>gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii
           KSM-K16]
 gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii
           KSM-K16]
          Length = 334

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P EV +  DL  WK    LT  E+    + L      ++   N  +  +  H+   + 
Sbjct: 30  WLPEEVALNGDLLTWKY---LTPAEKDTYMKVLAGLTLLDTEQGNTGMPLVAEHVQGHQR 86

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L      E AVH+ ++  I  +L   E   +LF   +  P +  KAN  +       
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANTIV------- 139

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
             S     K  D   L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 140 --SIYKDIKRGDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +      KE  Q +  +L E    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +P F+  E+  P +   ++ K K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-DEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
 gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
          Length = 324

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 19/306 (6%)

Query: 46  YLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
           + SA N  +W+ +EV    D   + S   L+  ER  +K +L   A  E +        +
Sbjct: 21  FTSAINKAYWVHSEVDFTADTQDFHSH--LSPAERSAVKNSLLAIAQIE-VAVKTFWGNL 77

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
           Y H   PE        A  E  HS  +  ++  LG +    F    E+P I  +  +   
Sbjct: 78  YDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLLEIPVIKQRVEY--- 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQ 223
               L      T ++D  ++++  L +F ++ E +  ++ FA ILS  R    M  ++  
Sbjct: 133 ----LGGVLKDTRSEDR-KKYVISLILFTILIENVSLFSQFAIILSFTRFKGYMKNVSNI 187

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
             +   DE +H N GI ++N I+ E P  +  E   +    + E+  +E         +G
Sbjct: 188 IAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESIEVEERILDWIFSEG 247

Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
            +  +       +M+F  +    +IG  PLF  +     P  W  E +      +FF  R
Sbjct: 248 EIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEEEVFANSLDDFFAKR 307

Query: 340 VTEYQQ 345
             +Y +
Sbjct: 308 PVDYTK 313


>gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 328

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 26/190 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W++      D  L +   L    + +  V     +++  H  
Sbjct: 37  TTNFWLPEKIPVSNDVQSWRNMTAQEQDATLKVFTGLTVLDTLQGTVG---AVSLIPHAV 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164
            P+        AF E+VH+ ++  I  +L              P I     WA     +Q
Sbjct: 94  TPQEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPEIDEAFRWARENEHMQ 142

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           Y        + +G         + +FV  V+ E   FY+GF   L +    K+   A+  
Sbjct: 143 YKARKILSEYASGEP-------EKMFVASVMLESFLFYSGFYLPLRMASTGKITNAADII 195

Query: 225 QYIMRDESLH 234
           + I+RDE++H
Sbjct: 196 RLIIRDEAIH 205


>gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
 gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
          Length = 402

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 120/310 (38%), Gaps = 46/310 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L + E+++   NL +    +++      LA     S+   
Sbjct: 60  WRPEEVDLSTDRMQYAK---LPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 116

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++   AF E +HS ++ +I  +L +D    F+      +I  ++    +Y  TL    
Sbjct: 117 ETWIETWAFSETIHSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDEC 176

Query: 174 FTTGTKDADQEFLQ-----DLFVFYV-----------------------VFEGMWFYTGF 205
               T    QE +      D  V Y                          E + FY  F
Sbjct: 177 HKLKTIMMLQEQVSGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSF 236

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT 263
           +   +     KM G A+  + I RDE+LH       I   Q+  ++P     E  + SR 
Sbjct: 237 SFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDP-----EMVEISRR 291

Query: 264 MLHEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +  EAT +       E  +A      G V G++  S   Y++ + ++R   +GL+  F  
Sbjct: 292 LKKEATAIFLEVYEQEKEWAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTP 351

Query: 316 TENPFPWMSE 325
             NP+PWM++
Sbjct: 352 IPNPYPWMNK 361


>gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
 gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
          Length = 326

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W+  N   +D++ ++ +  G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLSDWREFN---EDDKDIVGKVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ + +        +    F E+VH+ ++  I ++L        N  +E+  I     +
Sbjct: 75  SSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTL--------NTPKEIEEIFDWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+       LQ   V  V  E   FY+GF   L     NK+  
Sbjct: 127 NEILQYKANRINEIYQNGSP------LQKK-VASVFLETFLFYSGFYTPLYWLGHNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +AE  + I+RDES+H          G + ++  + E       EF      +L+E    E
Sbjct: 180 VAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQE-------EFTSWMYDLLYELYENE 232

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321
             Y H    K  VG        ++++ AN+    +G++PLF   Y +N  P
Sbjct: 233 EKYTHLLYDK--VGW-TDDVLVFLRYNANKALMNLGMDPLFADGYAQNVNP 280


>gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           fermentum IFO 3956]
 gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 333

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 34/324 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           NQ+  +     WEK        W+ T +P+ +DL  W+    L DD +  +    G    
Sbjct: 12  NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L        N   E
Sbjct: 66  LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDE 117

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           +  I +   W+    + L S +   G    DA ++ L+   V  V  E   FY+GF   L
Sbjct: 118 IDEIFS---WS-DSEEYLQSKAVKIGNLYLDAQEDPLKKK-VANVFLETFLFYSGFYTPL 172

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LH 266
                NK+  +AE  + I+RDES+H   G  +  + ++    L  K+ Q   R M   L+
Sbjct: 173 YYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLY 229

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
           E    E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M
Sbjct: 230 ELYDNEEKYTHVLYDQ--IGW-TDDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-M 285

Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347
           + +       +FF      Y+ GA
Sbjct: 286 NGISTTTSNHDFFSQVGNGYRLGA 309


>gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
 gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
          Length = 320

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 23/266 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +DL  WK+   LT DE+LM  R        ++L      +++     
Sbjct: 28  TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L L   E+   +R      +  N ALQ    +
Sbjct: 85  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQKKAEI 138

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S+  G     ++      V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 139 VK-SYYDGNDPEKRK------VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 191

Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q+ + E+      + +  + ++L+E    E  Y  +   P G    
Sbjct: 192 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 248

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++++++ AN+    +G E LF
Sbjct: 249 --EDVKKFLRYNANKALMNLGYEALF 272


>gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius UCC118]
 gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius UCC118]
 gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius CECT 5713]
 gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 326

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W+  N   +D++ ++ +  G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLSDWREFN---EDDKDVVGKVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ + +        +    F E+VH+ ++  I ++L        N  +E+  I     +
Sbjct: 75  SSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTL--------NTPKEIEEIFDWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+       LQ   V  V  E   FY+GF   L     NK+  
Sbjct: 127 NEILQYKANRINEIYQNGSP------LQKK-VASVFLETFLFYSGFYTPLYWLGHNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +AE  + I+RDES+H          G + ++  + E       EF      +L+E    E
Sbjct: 180 VAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQE-------EFTSWMYDLLYELYENE 232

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321
             Y H    K  VG        ++++ AN+    +G++PLF   Y +N  P
Sbjct: 233 EKYTHLLYDK--VGW-TDDVLVFLRYNANKALMNLGMDPLFADGYAQNVNP 280


>gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. MCS]
 gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. KMS]
 gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. JLS]
          Length = 320

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W   N LT  E+ +  R       
Sbjct: 13  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 67  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 125

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +      K+   A+  + I+RDE++H  + G      + +++P     E +  +  +L E
Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPAT-QAELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDS--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308


>gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 319

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDLEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NKFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    + F++    +L++    E  Y  +
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEEDYT-K 237

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           T+  G VG        ++++ AN+    +G +PLF  T N
Sbjct: 238 TLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275


>gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus]
          Length = 314

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 53/308 (17%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104
           N W P+++ + +D          +D+ RL+   +         F   +ESLV  NI   +
Sbjct: 36  NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 84

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160
            +  SN +   Y   Q   E +H   +  I+    G + G+L    +++    ++  K +
Sbjct: 85  VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMTYAKKIVEDATLAKKID 144

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W     +          T  A++  L      ++V EG++F + F  I        M G+
Sbjct: 145 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGVMRGV 190

Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
                YI RDE LH      + N +  + E+P +           +  EA  +E  +   
Sbjct: 191 CLANDYISRDELLHTRAAGLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 243

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335
           +  +G   +N    EQ++Q  A+R    I + PLF        P  + S      K  NF
Sbjct: 244 SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARPPNACPLSYTS-----AKSVNF 298

Query: 336 FETRVTEY 343
           FE   +EY
Sbjct: 299 FERDNSEY 306


>gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
 gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
          Length = 322

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 114/279 (40%), Gaps = 40/279 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D+  WKS      D    +   L    + ++ +  N V A    L   E 
Sbjct: 31  WFPEEIAVSKDIKQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
               +  AFE A+H+ ++ YI T+L  +E   ELF   ++   +  KAN           
Sbjct: 87  AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKAN---------KI 136

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  ++ D E L       V+ E   FY+GF   L LG    +   AE    I+RDE
Sbjct: 137 ADIYNSIEEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 196

Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           S+H   G+ V           ++ K E+  LW  E       +L +    E+ Y  +   
Sbjct: 197 SIH---GVAVGFFAQNLYKQFSKEKQESLQLWGYE-------LLLDLYQNEMKYTEDIYA 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
           +   GL +P  + Y+++ AN+    +G E +F   E NP
Sbjct: 247 E--TGL-SPEVKAYVRYNANKALMNVGFEAMFPEEEVNP 282


>gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
 gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
          Length = 388

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 43/317 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   + D E+     NL +    +S+       A    +S+P  
Sbjct: 49  WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162
             +L    F E +HS ++ +I+ +  +D    F+   + P+I  +A            W 
Sbjct: 106 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 165

Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205
            +Y        +       T   DA + F +D     +   Y+        E + FY  F
Sbjct: 166 RKYENAKEDLRYWEERDDQTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 224

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A   S      + G A+  ++I RDE LHL     +I Q +     +   E++Q +  + 
Sbjct: 225 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQT---GVDGDEWKQIAEELE 281

Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            EAT +       E  +       G +  L+    + Y++++A+ R    GL+  F    
Sbjct: 282 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 341

Query: 318 NPFPWMSEVIDLKKEKN 334
           +P PWM + ++  + +N
Sbjct: 342 HPLPWMRKWLNSDEVQN 358


>gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05ZYH33]
 gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 98HAH33]
 gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           SC84]
 gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           P1/7]
 gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           BM407]
 gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
 gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33]
 gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33]
 gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis SC84]
 gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis BM407]
 gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis P1/7]
 gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           suis GZ1]
 gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis JS14]
 gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
          Length = 319

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    LT +E+ ++ +  G     ++L +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 75  QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  + TGT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q K R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDKLRDWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
                +       E+ + F+   AN+    +G +PLF
Sbjct: 234 GYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLF 270


>gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
 gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
          Length = 386

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 43/317 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   + D E+     NL +    +S+       A    +S+P  
Sbjct: 47  WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162
             +L    F E +HS ++ +I+ +  +D    F+   + P+I  +A            W 
Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 163

Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205
            +Y        +       T   DA + F +D     +   Y+        E + FY  F
Sbjct: 164 RKYENAKEDLRYWEERDDQTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 222

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A   S      + G A+  ++I RDE LHL     +I Q +     +   E++Q +  + 
Sbjct: 223 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQT---GVDGDEWKQIAEELE 279

Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            EAT +       E  +       G +  L+    + Y++++A+ R    GL+  F    
Sbjct: 280 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 339

Query: 318 NPFPWMSEVIDLKKEKN 334
           +P PWM + ++  + +N
Sbjct: 340 HPLPWMRKWLNSDEVQN 356


>gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Protein B2; AltName: Full=Ribonucleotide
           reductase
 gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4]
 gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T]
          Length = 388

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 35/307 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++    F E +HS ++ +I+ +L  D  ++F+                  Y +V   T
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDL-----FVFYVV--FEGMWFYTGFAQIL 209
            +   A    +           KD +Q   +DL        +V+   E + FY  FA   
Sbjct: 165 REWENAKDMVEYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTF 224

Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTM 264
           +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q++  +
Sbjct: 225 NFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDI 284

Query: 265 LHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFP 321
             E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     ++P+P
Sbjct: 285 FMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYP 344

Query: 322 WMSEVID 328
           W+ E ++
Sbjct: 345 WIREYLN 351


>gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus]
          Length = 213

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  +L  W   N 
Sbjct: 67  ENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW---NK 123

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE   +   Q   E VHS  +  
Sbjct: 124 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEMYSL 183

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKAN 160
           +I +   D  +   LFN    +P +  KA+
Sbjct: 184 LIDTYIRDPKKREFLFNAIETMPYVKKKAD 213


>gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 320

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+ +I     +
Sbjct: 76  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 128 NDCLQKKAKIINDIYENG--DALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q   R  +++  L ++    E 
Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235

Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
             K  + G+        ++++ AN+    +G +PLF  T N
Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276


>gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05HAS68]
          Length = 320

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    LT +E+ ++ +  G     ++L +   V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 76  QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  + TGT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 128 NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q K R  +++  LL   Y +E 
Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDKLRDWMYD--LLYQLYENEE 234

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
                +       E+ + F+   AN+    +G +PLF
Sbjct: 235 GYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLF 271


>gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMG 18311]
 gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus CNRZ1066]
 gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMD-9]
 gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus ND03]
          Length = 320

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NKYLQTKAKIINDIYENGT--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L  KE Q+  R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEKE-QESFREWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
           +    +       E+ M F+   AN+    +G +PLF  + N
Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275


>gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
          Length = 333

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE     D+  W S   L+ + R   K+ LG     ++L ++  +  I  H+ + +C
Sbjct: 31  WIDTEYIPSKDIDSWHS---LSPEMRETYKKVLGGLTLLDTLQSHTGMPKIIDHIESLQC 87

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           R  L      E++H+ ++  I T++   E   E+F   ++   +  KAN   +Y Q L++
Sbjct: 88  RSVLSYMCMMESIHAKSYSTIFTTVASTEEINEIFRWVQDNQYLQFKANKIDEYYQCLNN 147

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P+ T       +E    L V  V  E   FY+GF   L L    +MV  ++  + I+ DE
Sbjct: 148 PNATP------REIYMAL-VASVFLESYLFYSGFFLPLWLSGHGQMVASSDIIKKIIADE 200

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  F   +  +I  E   +  +  +++   + +E    E+ +  E      VGL +  
Sbjct: 201 SIHGVFVGKLAQEIFEEMSFVEKESVKKEIMNLFYELYENELKFTDEIYSD--VGLTS-E 257

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ++Y+++  N+    +G +  F+  E     ++ +     + +FF  + T Y++  E+
Sbjct: 258 VKEYIRYNGNKALMNLGFKEEFEIKEVNAIVLNGLNVETTQHDFFSKKSTNYEKTLEV 315


>gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2]
          Length = 313

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 25/236 (10%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQTLS 170
            Y + Q   E VHS  +  I   L  ++     +Y  R V  P+I AK +W     +   
Sbjct: 88  HYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIYVARTVGHPAIHAKVDWLEARVRDCP 147

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           S              + + F+  ++ EG++F   FA I  L  +N +    +    I RD
Sbjct: 148 S--------------VPEKFILMILIEGIFFAASFAAIAFLRTSNLLKVTCQSNDLISRD 193

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN-- 288
           E++H      + N     +P    K    + R +  EA  +EIA+    MP+    L+  
Sbjct: 194 EAVHTTASCCIYNNYIGAHP----KPPPTRVRQLFLEAVDIEIAFIRAKMPRDGQVLSES 249

Query: 289 -APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
              S E Y++F A+R    IG +PLF        +   ++   K  NFFE R T Y
Sbjct: 250 AVASIENYVRFSADRLLCLIGDQPLFNAPPPDANFPLRLMSTDKHTNFFECRSTAY 305


>gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 322

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 137/354 (38%), Gaps = 56/354 (15%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +VD  R +N     N+L   K    W++      N W+P +VP+ +D A W++       
Sbjct: 5   SVDRMRAVN----WNRLPDPKDAQVWDRL---TGNFWLPEKVPLSNDSASWQTLTAQEQQ 57

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
             + +   L    ++++ V     +++      P     L   AF E+VH+ ++  I ++
Sbjct: 58  TTVRVFTGLTLLDTTQATVG---AVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFST 114

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       + F+     P +  KA   + Y +   +      +               V+
Sbjct: 115 LCSTRQIDDAFDWSERNPHLQRKAQIVVDYYRGDDALKRKAAS---------------VM 159

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  F I    Q  +        
Sbjct: 160 LESFLFYSGFYLPMYWSSRGKLTNTADIIRLIIRDEAVH-GFYIGYKCQRGL-------A 211

Query: 256 EFQQKSRTMLHEAT--LL------EIAYAHETMPKGFVGLN-APSCEQYMQFIANRRCHQ 306
           E  +  R+   E T  LL      EI YAH+     + GL        YM+F ANR    
Sbjct: 212 ELSEPERSGHREYTYELLNALYTNEIDYAHDL----YDGLGWTDDVLPYMRFNANRALAN 267

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
           +G EP+F  ++   NP    +      +  +FF    + Y  G+     +  WD
Sbjct: 268 LGYEPMFGPSDCRVNPAVLSALDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321


>gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
 gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
          Length = 391

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 120/305 (39%), Gaps = 36/305 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   +     + + E+++   NL +    +++      LA     S+   
Sbjct: 49  WRPEEIDLSIDRMQYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++   AF E +HS ++ +I  +L +D  + F+      +I  ++    +Y   L    
Sbjct: 106 ETWIETWAFSETIHSRSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAEC 165

Query: 170 ------------------SSPSFTTGTKDADQEFLQDLFVFYV------VFEGMWFYTGF 205
                                S     K   ++  +     Y+        E + FY  F
Sbjct: 166 HELKNIVLKIEMLTSHGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSF 225

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQ--QKS 261
               +     KM G A+  + I RDE+LH       I   Q+  ++P +    FQ  +++
Sbjct: 226 TFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEA 285

Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +  E    E  +A      G V G++  S   Y++ + ++R   +GL+  FK + NP+
Sbjct: 286 TQIFLEVYEQEKEWAEHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPY 345

Query: 321 PWMSE 325
           PWM++
Sbjct: 346 PWMNK 350


>gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
          Length = 425

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 26/302 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +DL  WK+   LT DE+LM  R        ++L      +++     
Sbjct: 133 TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 189

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L L   E+   +R      +  N ALQ    +
Sbjct: 190 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQKKAEI 243

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S+  G     ++      V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 244 VK-SYYDGNDPEKRK------VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 296

Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q+ + E+      + +  + ++L+E    E  Y  +   P G    
Sbjct: 297 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 353

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++++ AN+    +G E LF       NP    +   +  +  +FF    + Y 
Sbjct: 354 --EDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSPNADENHDFFSGSGSSYV 411

Query: 345 QG 346
            G
Sbjct: 412 MG 413


>gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           uberis 0140J]
 gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus uberis 0140J]
          Length = 319

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 120/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAKIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + +++ K E+   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDLLYQLYENEEEYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDPVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 325

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 37/276 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W +   LT DE+ +  R        ++L      +++     
Sbjct: 33  VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTLQGTVGAVSLIPDAI 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E  ++  KA   + Y  
Sbjct: 90  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSVENENLQKKAQIVMNY-- 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                   TG     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 148 -------YTGDDPLKRK------VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 194

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ +++ + E       E +  +  +L+E    EI Y H+  
Sbjct: 195 IRDEAVHGYYIGYKFQKGLEKVSEERRE-------EIKAYTFDLLYELYENEIQYTHDLY 247

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
               VGL A   ++++ + AN+    +G E +F  T
Sbjct: 248 DA--VGL-AEDVKKFLHYNANKALMNLGYEAMFPST 280


>gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
 gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
          Length = 386

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 43/317 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   + D E+     NL +    +S+       A    +S+P  
Sbjct: 47  WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162
             +L    F E +HS ++ +I+ +  +D    F+   + P+I  +A            W 
Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGQYYDDVLYWI 163

Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205
            +Y        +       T   DA + F +D     +   Y+        E + FY  F
Sbjct: 164 RKYENAKEDLRYWEERDDHTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 222

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A   S      + G A+  ++I RDE LHL     +I Q +         E++Q +  + 
Sbjct: 223 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGAD---GDEWKQIAEELE 279

Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            EAT +       E  +       G +  L+    + Y++++A+ R    GL+  F    
Sbjct: 280 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 339

Query: 318 NPFPWMSEVIDLKKEKN 334
           +P PWM + ++  + +N
Sbjct: 340 HPLPWMRKWLNSDEVQN 356


>gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 319

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  +A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAKIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q+  R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQESFREWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
                +       ++ M F+   AN+    +G +PLF  T N
Sbjct: 234 SYTKTLYDQVGWTDEVMTFLRYNANKALMNLGQDPLFPDTAN 275


>gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 324

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 133/322 (41%), Gaps = 33/322 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    WE+      N W+P +VP+ +D+  W   N LT  E+ +  R       
Sbjct: 17  NRLQDDKDAEVWERL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +      K+   A+  + I+RDE++H  + G      + +E+     +E +  +  +L E
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEAT-RQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 291 LSPNADENHDFFSGSGSSYVIG 312


>gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 324

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +DL  W +   LT  E+ +  R       
Sbjct: 17  NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ ++++ K         E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAK-------RAELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312


>gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 320

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+ +I     +
Sbjct: 76  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 128 NDYLQKKAKIINDIYENG--DALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q   R  +++  L ++    E 
Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235

Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
             K  + G+        ++++ AN+    +G +PLF  T N
Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276


>gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp.
           FB24]
 gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter sp. FB24]
          Length = 324

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W +   LT DE+ +  R        +++      +++     
Sbjct: 32  VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E  ++  KA   + Y Q
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQKKAQIVMDYYQ 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ +++ K        +E +  +  +L E    E+ Y H+  
Sbjct: 194 IRDEAVHGYYIGYKFQKGLEKVSEEK-------RQEIKDYTFELLFELYENEVQYTHDLY 246

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               VGL A   ++++ + AN+    +G E +F
Sbjct: 247 DS--VGL-AEDVKKFLHYNANKALMNLGYEAMF 276


>gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
 gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
          Length = 322

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +         E +H+ ++ +I T+L    +   L + +  E P +  K++  +     L 
Sbjct: 82  KAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIISNYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----FDQYMAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  ++   +L E    E++Y H  M    +GL  
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEELYKNEVSYTH--MLYDDIGL-T 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+Q+  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           parasuis SH0165]
 gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parasuis SH0165]
          Length = 325

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 29/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q+ P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +  
Sbjct: 11  QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAISQV 68

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E  V       +Y +   PE        A  E  H   + +++  LGL++  +F    E+
Sbjct: 69  EVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLND--MFTQITEI 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             +  +  +   + +           KD  + +F+  L +F +  E +  +  F  ++S 
Sbjct: 126 EPLMKRIRYMEDFMRE----------KDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMSF 175

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
            +  N   GI+   +   ++E +H  FGI +   +  E+  L+T EF ++ +T+  +A  
Sbjct: 176 NKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAFE 235

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPW 322
            E         +G +  ++  + E Y+    N     +GLEP       L K TE    W
Sbjct: 236 AERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETE----W 291

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345
               I   KE +FF  R T+Y +
Sbjct: 292 FDIEIISTKETDFFNKRSTDYSK 314


>gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
 gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
          Length = 322

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 125/306 (40%), Gaps = 41/306 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D+  WKS      D    +   L    + ++ +  N V A    L   E 
Sbjct: 31  WFPEEIAVSKDIKQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
               +  AFE A+H+ ++ YI T+L  +E   ELF           K N  LQY     +
Sbjct: 87  AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEW--------VKKNEFLQYKANKIA 137

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             + +  ++ + E L       V+ E   FY+GF   L LG    +   AE    I+RDE
Sbjct: 138 DIYNS-IEEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 196

Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           S+H   G+ V           ++ K E  HLW  E       +L +    E+ Y  +   
Sbjct: 197 SIH---GVAVGFFAQNLFKQFSKEKQEELHLWGYE-------LLLDLYQNEMKYTDDIYA 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +   GL +P    Y+++ AN+    +G E +F   E NP   M+ + +     +FF  + 
Sbjct: 247 E--TGL-SPEVRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKG 302

Query: 341 TEYQQG 346
             Y + 
Sbjct: 303 ATYAKA 308


>gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           avium 104]
          Length = 324

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +DL  W +   LT  E+ M  R       
Sbjct: 17  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++  K        +E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312


>gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 319

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    + F++    +L++    E  Y  +
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEEDYT-K 237

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++  G VG        ++++ AN+    +G +PLF  T N
Sbjct: 238 SLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275


>gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 322

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +         E +H+ ++ +I T+L    +   L + +  E P +  K++  +     L 
Sbjct: 82  KAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIISNYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----FDQYMAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  ++   +L E    E++Y H  M    +GL  
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEELYKNEVSYTH--MLYDDIGL-T 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+Q+  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 333

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 34/324 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           NQ+  +     WEK        W+ T +P+ +DL  W+    L DD +  +    G    
Sbjct: 12  NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L        N   E
Sbjct: 66  LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDE 117

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           +  I +   W+    + L + +   G    DA ++ L+   V  V  E   FY+GF   L
Sbjct: 118 IDEIFS---WS-DSEEYLQNKAVKIGNLYLDAQEDPLKKK-VANVFLETFLFYSGFYTPL 172

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LH 266
                NK+  +AE  + I+RDES+H   G  +  + ++    L  K+ Q   R M   L+
Sbjct: 173 YYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLY 229

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
           E    E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M
Sbjct: 230 ELYDNEEKYTHVLYDQ--IGW-TDDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-M 285

Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347
           + +       +FF      Y+ GA
Sbjct: 286 NGISTTTSNHDFFSQVGNGYRLGA 309


>gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120]
 gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
           [Shigella flexneri K-218]
          Length = 178

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252
            E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P + 
Sbjct: 6   LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA 65

Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+
Sbjct: 66  EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 125

Query: 311 PLFKYTENPFPWMS 324
             F+   NP PW++
Sbjct: 126 LPFQTRSNPIPWIN 139


>gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 319

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    + F++    +L++    E  Y  +
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEENYT-K 237

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++  G VG        ++++ AN+    +G +PLF  T N
Sbjct: 238 SLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275


>gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 324

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +DL  W +   LT  E+ M  R       
Sbjct: 17  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++  K        +E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312


>gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
          Length = 174

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252
            E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P + 
Sbjct: 2   LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA 61

Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+
Sbjct: 62  EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 121

Query: 311 PLFKYTENPFPWMS 324
             F+   NP PW++
Sbjct: 122 LPFQTRSNPIPWIN 135


>gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 380

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 125/296 (42%), Gaps = 27/296 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   + +K  L + ER +   NL +    +S+   +    +   +S PE 
Sbjct: 49  WRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166
             ++   +F E +HS ++ +II  +  D   +F+       +     SI+++ +   + T
Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMT 166

Query: 167 ---QTLSSPSFT-------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              Q L    F         G     Q  L    V     E + FY  FA   + G    
Sbjct: 167 CARQHLGEDEFERLYISEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKL 226

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA-- 274
           + G  +  ++I RDE+LH      +I  ++     L  K    +  + +++ T++++A  
Sbjct: 227 LEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQ-TMMDVAGQ 285

Query: 275 ---YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325
              +A      G  +GLNA   + Y+++  N    ++GL  LF +  ++P  WM++
Sbjct: 286 EMRWADYLFKDGSMIGLNADILKSYVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNK 341


>gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0031]
          Length = 321

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTFLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P     + +     +L+E    E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G++PLF  T N
Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275


>gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 342

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 24/298 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  +  H+ +P+ 
Sbjct: 37  WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 93

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+    + + L  
Sbjct: 94  KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 153

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P       D D + L    V  V  E   FY+GF   L L    ++    E    I+RDE
Sbjct: 154 P-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEIIALILRDE 206

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET--MPKGFVGLNA 289
           ++H   G  +  Q   EN  L   E Q+  +  +    LLE+ YA+E       +  L  
Sbjct: 207 AIHGVTG-GIFAQEIYEN-QLTEAEQQEVDKEAIQ---LLEMLYANELDYTNDVYAPLGK 261

Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEY 343
              E+  +F+   AN+    +G +  F   E   P +   +  K K+ +FF  +   Y
Sbjct: 262 DMIEEVNKFLRYNANKAMMNLGYDQYFD-DEYVNPIVQNGLQTKTKQHDFFSVKGNGY 318


>gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis V583]
 gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus
           faecalis V583]
 gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterococcus sp. 7L76]
 gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2137]
 gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4000]
 gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0017]
 gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0027]
 gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2141]
 gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4244]
 gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0043]
 gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0312]
 gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0645]
 gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1302]
 gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1341]
 gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1342]
 gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1346]
 gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309B]
 gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0630]
 gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309A]
 gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis OG1RF]
          Length = 321

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P     + +     +L+E    E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G++PLF  T N
Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275


>gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
 gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
          Length = 334

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           I  H+ + +CR  L      E +H+ ++  I T++       E FN  +E   +  KAN 
Sbjct: 78  IIDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANK 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y Q +++P      K   +E    L    V  E   FY+GF   L L    +MV   
Sbjct: 138 IDYYYQKMNNP------KATKREIYMALCA-SVYLETYLFYSGFFLPLWLAGQGEMVASC 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+ DES+H  F   +  +I         +  +++ + ++H+    E  Y  E   
Sbjct: 191 DIIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVY- 249

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
            G VGL A   ++Y+++ AN+    +G E  F+  + NP       ++   + +FF  + 
Sbjct: 250 -GDVGLTA-DVKEYIRYNANKALMNLGFEEEFEVKDVNPIVLNGLNVE-TTQHDFFSKKS 306

Query: 341 TEYQQGAEL 349
           T Y++  E+
Sbjct: 307 TNYEKALEV 315


>gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
 gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
          Length = 318

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 41/306 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D+  WKS      D    +   L    + ++ +  N V A    L   E 
Sbjct: 27  WFPEEIAVSKDIQQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
               +  AFE A+H+ ++ YI T+L  +E   ELF   ++   +  KAN           
Sbjct: 83  AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKAN---------KI 132

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  ++ D E L       V+ E   FY+GF   L LG    +   AE    I+RDE
Sbjct: 133 ADIYNSIEEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 192

Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           S+H   G+ V           ++ K E   LW  E       +L +    E+ Y  +   
Sbjct: 193 SIH---GVAVGFFAQNLYKQFSKEKQEALQLWGYE-------LLLDLYQNEMKYTEDIYA 242

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +   GL +P  + Y+++ AN+    +G E +F   E NP   M+ + +     +FF  + 
Sbjct: 243 E--TGL-SPEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKG 298

Query: 341 TEYQQG 346
             Y + 
Sbjct: 299 ATYAKA 304


>gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 343

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  +  H+ +P+ 
Sbjct: 38  WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 94

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+    + + L  
Sbjct: 95  KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 154

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P       D D + L    V  V  E   FY+GF   L L    ++    E    I+RDE
Sbjct: 155 P-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEIIALILRDE 207

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           ++H   G  +  Q   EN  L   E Q+  +  +    LLE+ YA+E
Sbjct: 208 AIHGVTG-GIFAQEIYEN-QLTEAEQQEVDKEAIQ---LLEMLYANE 249


>gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus]
          Length = 139

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KA+WAL +           G KDA  +F + +  F  V EG++F   
Sbjct: 10  LFNAVETLPCVKKKADWALNWI----------GNKDA--QFGERVVAFAAV-EGIFFSGS 56

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +         HL  K  +   +++
Sbjct: 57  FASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSEATVKSI 109

Query: 265 LHEATLLEIAYAHETMPKGFVGLNA 289
           +  A  +E  +  + +P   +G+N 
Sbjct: 110 IVNAVQIEQEFLTQALPVKLIGMNC 134


>gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit
           [Mycobacterium abscessus]
          Length = 324

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 129/310 (41%), Gaps = 42/310 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W   N LTD E+ +  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPVSNDIQSW---NTLTDHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P         AF E+VH+ ++  I ++L     E+ + +R   E P++  KA   ++Y 
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFRWSEENPNLQRKAEIVMEYY 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D+   +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 148 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192

Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           I+RDE++H  +       G++ +++ K         E ++ +  +L+E    E  Y  + 
Sbjct: 193 IIRDEAVHGYYIGYKFQRGLERVDEAK-------RAEIKEYTYDLLYELYENETDYTEDL 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
             +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF
Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFF 302

Query: 337 ETRVTEYQQG 346
               + Y  G
Sbjct: 303 SGSGSSYVIG 312


>gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 319

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 56/294 (19%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+  A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NLFLQNKAKIINDIYENGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264
           +AE  + I+RDES+H          G + +++ + E+   W  +         +Q ++T+
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLYENEEQYTKTL 239

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                  E+ +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi]
          Length = 87

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
           ++P   +G+N+    QY++F+A+R    +G   +F +++NPF WM ++I L+ + NFFE 
Sbjct: 5   SLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWM-DLISLQGKTNFFEK 62

Query: 339 RVTEYQQGA 347
           RV +YQ+  
Sbjct: 63  RVADYQKSG 71


>gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           fallax KCTC 3537]
          Length = 326

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 40/281 (14%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T VP+ +DL  W+  +    +E+ ++    G   + ++L + + +
Sbjct: 25  TWEK---LTQQFWLDTRVPISNDLRNWRDTSA---EEKKVLNLVFGGLTTLDTLQSQDGM 78

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             + +   N +    L    F E+VH+ ++  I  +L  D+ E          I A   W
Sbjct: 79  AELKKDAVNQKEEAVLNNIQFMESVHAKSYSSIFETLN-DKAE----------IEAVFEW 127

Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           A     LQY     +  +  GT       LQ   V  V  E   FY+GF   L     NK
Sbjct: 128 ADNDEYLQYKAQRINDIYHNGTP------LQKK-VASVFLETFLFYSGFYTPLYFVGHNK 180

Query: 217 MVGIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           M+ +AE  + I+RDES+H   + +   +  NQ+  +       E Q     +L E    E
Sbjct: 181 MLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQ----SELQSWMYDLLFELYENE 236

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             + HE   +  +G    S   ++++ AN+    +G EP+F
Sbjct: 237 EKFTHELYDE--IGW-TDSVMTFLRYNANKALMNLGQEPMF 274


>gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis 62]
          Length = 321

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P     + +     +L+E    E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEEHYTEE 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G++PLF  T N
Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275


>gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 319

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 28/278 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G     +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGNALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    + F++    +L+     E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYT-E 237

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           T+  G VG      + ++++ AN+    +G +PLF  T
Sbjct: 238 TLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLFPDT 273


>gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 325

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 134/318 (42%), Gaps = 19/318 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q+ P +Y    E   +  +++W+ TE     D+  +K+   ++D ER  + R++   +  
Sbjct: 11  QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAISQI 68

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E  V       +Y +    E        A  E  H   + +++  LG++E  LF     +
Sbjct: 69  EVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMNE--LFTQITHI 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P++ A+    ++Y +     +F       +QE +  L +F +  E +  +  F  ++S  
Sbjct: 126 PALMAR----IEYME-----AFMRNKDKNNQELVLSLVLFSLFVEHISLFGQFLIMMSFN 176

Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
           +  N   GI+   +   ++E +H  FGI + + IK E+P L+T  F    +T+  +A   
Sbjct: 177 KYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQALAA 236

Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVI 327
           E    +     G +  L   + E Y+    N     +G+E  +   E       W    I
Sbjct: 237 ERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDIEI 296

Query: 328 DLKKEKNFFETRVTEYQQ 345
              KE +FF  R T+Y +
Sbjct: 297 LSGKENDFFYKRSTDYSK 314


>gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H]
          Length = 392

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 47/315 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155
             ++    F E +HS ++ +I+ +L  D  ++F+       + +   SI           
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKT 164

Query: 156 ----TAKANWALQYTQTLSSPSFTTGTKDA-------DQEFLQDLFV-FYVV--FEGMWF 201
                AKA+  ++Y + +++       KDA        +E ++ L++  +V+   E + F
Sbjct: 165 RYWQNAKAD--IEYKKEINADE--DDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRF 220

Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KE 256
           Y  FA   +  +  + M G A+  ++I RDE LHL     +I Q+++  +   W    KE
Sbjct: 221 YVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKE 280

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFK 314
            +Q++  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+  
Sbjct: 281 CEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITD 340

Query: 315 Y-TENPFPWMSEVID 328
              ++P+PW+ E ++
Sbjct: 341 APVKHPYPWIREYLN 355


>gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 320

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +DL  W +   LT  E+ M  R       
Sbjct: 13  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGLTL 66

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 67  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 125

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++  K        +E +  +
Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 223

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 224 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 281 PAILSALSPNADENHDFFSGSGSSYVIG 308


>gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
 gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
          Length = 322

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L+D ER   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSDSERETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  +     L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIDNYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  Q+   +L+E    E++Y H  +    +GL  
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-T 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 324

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +DL  W +   LT  E+ M  R       
Sbjct: 17  NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++  +        +E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDAR-------KQELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312


>gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 329

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 127/302 (42%), Gaps = 26/302 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  WK+   LT  E+LM  R        ++L      +++     
Sbjct: 37  TGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L L   E+   +R      +  N ALQ    +
Sbjct: 94  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENAALQKKAEI 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S+  G  DA++       V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 148 IK-SYYDG-DDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q+ + E+      + +  + ++L+E    E  Y  +   P G    
Sbjct: 201 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 257

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++++ AN+    +G E LF +     NP    +   +  +  +FF    + Y 
Sbjct: 258 --EDVKKFLRYNANKALMNLGYEALFPHDATNVNPAILAALSPNADENHDFFSGSGSSYV 315

Query: 345 QG 346
            G
Sbjct: 316 MG 317


>gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
 gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
          Length = 327

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 26/315 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
           G  WE+ L      W+ TE     D+  WKS   L+ + + + KR LG     ++L ++ 
Sbjct: 18  GMFWEQNL---RQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHT 71

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITA 157
            +  +  H+   + +  L      EA+H+ ++  I T++    +  ELF+       +  
Sbjct: 72  GMPKLLDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQF 131

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA+   +Y + L  P  +        E L       V+ E   FY+GF   L L    +M
Sbjct: 132 KASTIDKYYRALDVPKVSN-------EVLFMGLAASVLLESFLFYSGFFMPLWLAGQGQM 184

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQ---IKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           V  A+  + I+ DES+H  F + ++ Q    K+ NP    ++ + K   +L E    E+ 
Sbjct: 185 VASADIIKKIVADESIHGVF-VGLLAQDVYKKLPNP----EKCKAKLEALLMELYENELK 239

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           Y  E   +  VGL A   ++Y+++ AN+    +G E LF+        ++ +     + +
Sbjct: 240 YTDELYTE--VGLTA-EVKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHD 296

Query: 335 FFETRVTEYQQGAEL 349
           FF  + T Y++  E+
Sbjct: 297 FFSKKSTNYEKSMEV 311


>gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
 gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
          Length = 319

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 38/285 (13%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGT---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           N  LQ    + +  +  GT   K     FL+             FY+GF   L     NK
Sbjct: 127 NEYLQTKAKIINDIYENGTPLQKKVASTFLETFL----------FYSGFFTPLYYLGNNK 176

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           +  +AE  + I+RDES+H   G  +  + ++    L  +E Q+  R  +++  LL   Y 
Sbjct: 177 LANVAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYELYE 230

Query: 277 HETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
           +E +    +       E+ M F+   AN+    +G +PLF  + N
Sbjct: 231 NEELYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275


>gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 336

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 24/277 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   ++S   L + E+ +   NL +    +S+   +  +A    +S PE 
Sbjct: 49  WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             ++    F E +HS ++ +II ++  D   +F+       I  +A     Y   L   S
Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165

Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217
                +  G    D    Q  L++L        +   V E + FY  FA   +      M
Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL    +++N I    ++P +    +E +Q++  +   A   E 
Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
            +A      G  +GLN     +Y+++I N R   +GL
Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGL 322


>gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum WCFS1]
 gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 336

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 21/195 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+A W+    L DD R ++    G     ++L + + +
Sbjct: 33  TWEK---LTEQFWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGL 86

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DE-GELFNMYREVPSITAKA 159
            A+ R++        L    F E+VH+ ++  I  +L   DE  E+F+       + AKA
Sbjct: 87  QALRRNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKA 146

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            W  +    +          +             V  E   FY+GF   L     N++  
Sbjct: 147 QWIYKLYDNIDEDPLKQKVAN-------------VFLETFLFYSGFYTPLYYLGHNQLPN 193

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 194 VAEIIKLILRDESVH 208


>gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 319

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 122/294 (41%), Gaps = 56/294 (19%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+  A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NLFLQNKAKIINDIYKNGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264
           +AE  + I+RDES+H          G + ++  + E+   W  +         +Q ++T+
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDLLYQLYENEEQYTKTL 239

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                  E+ +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
 gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
          Length = 322

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDSEKETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  +     L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIDNYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  Q+   +L+E    E++Y H  +    +GL  
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-T 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304


>gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
 gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
          Length = 392

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 47/315 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155
             ++    F E +HS ++ +I+ +L  D  ++F+       + +   SI           
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKT 164

Query: 156 ----TAKANWALQYTQTLSSPSFTTGTKDA-------DQEFLQDLFV-FYVV--FEGMWF 201
                AKA+  ++Y + +++       KDA        +E ++ L++  +V+   E + F
Sbjct: 165 RYWQNAKAD--IEYQKEINADE--DDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRF 220

Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KE 256
           Y  FA   +  +  + M G A+  ++I RDE LHL     +I Q+++  +   W    KE
Sbjct: 221 YVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKE 280

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFK 314
            +Q++  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+  
Sbjct: 281 CEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITD 340

Query: 315 Y-TENPFPWMSEVID 328
              ++P+PW+ E ++
Sbjct: 341 APVKHPYPWIREYLN 355


>gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29]
          Length = 376

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 37/298 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A+  S+  L++ E+ +  +NL + +  +S+      L     +S+   
Sbjct: 48  WRPEEVDLSKD-AIDYSR--LSEQEQYVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +I+ +L +D   +F+       I A+A    QY        
Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIMARATSVTQYYDDLISEL 164

Query: 166 ------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                  Q++ SP          +E +          E M FY  FA   S G    M G
Sbjct: 165 KTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFYVSFACTFSFGERGLMEG 224

Query: 220 IAEQYQYIMRDESLHLNF----------GIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            A+  + I RDE LHL            G D    + I       +  + K+ ++  E  
Sbjct: 225 NAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDI------ARRLESKAVSIFIEVA 278

Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323
             E  +A + +    + GL+      Y+ ++   R   +GL   + +    ++P PW+
Sbjct: 279 EQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNVPIKHPLPWI 336


>gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 324

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 29/270 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LTDDE+L+  R        +++      +++      P
Sbjct: 34  NFWLPEKVPLSNDVQSWAT---LTDDEKLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQ 167
                    AF E+VH+ ++  I ++L     +DE   F    E  ++  KA   + Y +
Sbjct: 91  HEEAVYTNIAFMESVHAKSYSSIFSTLCNTREIDEA--FRWSTENQNLQKKAQIIVDYYR 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  + N     + E +  +  +L++    E+ Y H+      VG
Sbjct: 194 IRDEAVH-GYYIGYKYQRALANESTERRDELKDYTFALLYDLYENEVQYTHDLYDS--VG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           L +   ++++ + AN+    +G E +F  T
Sbjct: 251 L-SEDVKKFLNYNANKALMNLGYEAMFPST 279


>gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp.
           8437]
          Length = 295

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 19/205 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111
           W P ++    D   W + N +  ++ + ++ N  F    E++  +  +L + + ++N   
Sbjct: 30  WDPKDIDFSQDRKDWATFNEI--EKGMSLRLNSVFLGGEEAVTKD--LLPLIQVIANEGR 85

Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    +EEA H   F+ ++  LG+  G+L        SI    N+   + + L 
Sbjct: 86  LEEEMYLTTFLWEEAKHVEVFRRMVDELGIT-GDL--------SIYHSDNYKKIFYEYLP 136

Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228
             +    T+D   E   +  V Y ++ EGM   TG+ +  +S  R   M G  + ++Y+ 
Sbjct: 137 E-AMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSYKRLGIMPGTVQAFEYLK 195

Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253
           RDES H+ +G+ +++++  E+ H+W
Sbjct: 196 RDESRHICYGVYLLSRLIAEHDHIW 220


>gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 196

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 4   NTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHW 54
           N  + P+ AG + +  D      NA  +  Q        L P++Y   W KY    +  W
Sbjct: 41  NLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIW 100

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
              E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R
Sbjct: 101 TVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEAR 157

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            +   Q   E +HS T+  ++ +   D  E   +   +
Sbjct: 158 AFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAI 195


>gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. equi 4047]
 gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. equi 4047]
          Length = 319

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 56/294 (19%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRR---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+  A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NVFLQNKAKIINDIYENGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264
           +AE  + I+RDES+H          G + +++ + E+   W  +         +Q ++T+
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLYENEEQYTKTL 239

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                  E+ +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 171

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKE 256
           FY  FA   +      M G A+  + I RDE+LHL     ++N ++            +E
Sbjct: 3   FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEE 62

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314
            +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 63  CKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 122

Query: 315 YTENPFPWMS 324
            T NP PW++
Sbjct: 123 ATNNPIPWIN 132


>gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes M1 GAS]
 gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit
           [Streptococcus pyogenes SSI-1]
 gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
 gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 319

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQEKARIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 325

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 134/321 (41%), Gaps = 25/321 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q+ P +Y    E   +  +++W+ TE     D+  +K+   +T  ER  + R +   +  
Sbjct: 11  QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAISQV 68

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           E  V       +YR+   PE        A  E  H   + +++  LG++E  +F+   E 
Sbjct: 69  EVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMNE--MFSQITEY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYVVFEGMWFYTGFAQILSL 211
           P++  +  +   + +           KD  +E F+  L +F +  E +  +  F  I+S 
Sbjct: 126 PALMRRIEYMEDFMRD----------KDIGRERFVLSLVMFSLFVEHISLFGQFLIIMSF 175

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
            +  N   GI+   +   ++E +H  FGI +   I+ E+P L+T +F  + + + + A  
Sbjct: 176 NKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHALE 235

Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324
            E   + +  E     F+ L+  + E Y+    N     +G+   +           W  
Sbjct: 236 AERGILRWIFEDGDLDFITLD--TVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFD 293

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
             I   KE +FF  R T+Y +
Sbjct: 294 IEILSGKEGDFFYKRSTDYSK 314


>gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 317

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 23/300 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W S    T+ E+ +  R        +++ +     A+ +    
Sbjct: 25  SNFWLPEKVPLSNDIQSWSS---FTEAEKQLTIRVFTGLTLLDTIQSKAGAPALMKDALT 81

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P          F EAVH+ ++  I ++L     E+   +R      A+ N  LQ    L 
Sbjct: 82  PHEEAVFANICFMEAVHARSYSSIFSTL-CTTVEIDEAFR-----WAELNKDLQRKAKLI 135

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
              +T  T+   ++      +  V  E   FY+GF   L      ++   A+  + I++D
Sbjct: 136 EACYTDDTQPLKKK------IASVFLESFMFYSGFYLPLHWASRARLTNTADLIRLIIKD 189

Query: 231 ESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           E++H  + I    Q+     P    +E +  +  +L +   +E +YA +      +GL  
Sbjct: 190 EAVH-GYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQLYEIECSYAADLYDG--IGLTE 246

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              +Q++ + AN+    +G +P+F       NP    +   D  +  +FF    + Y  G
Sbjct: 247 -DVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAALAPDANENHDFFSGSGSSYVIG 305


>gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 317

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 18/205 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110
           W P ++    D   W+   G+ + ER +I R    F + E  V  ++   ++A+ R    
Sbjct: 37  WDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVARE-GR 92

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    FEEA H+  F+  +  +  +  +L        S+  K ++   + + L 
Sbjct: 93  LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL--------SVFHKDHYRKIFYEYLP 144

Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228
             +      D   E   +  V Y +V EG+   TG+ A   +L + NK+ G+ +  + + 
Sbjct: 145 Q-AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQ 203

Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253
           RDES H+ +G  +++++  EN H+W
Sbjct: 204 RDESRHIGYGTYLLSRLISENAHIW 228


>gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 318

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 42/285 (14%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L D+E+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++  ++  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTPNEIDEIFDWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+       LQ   +  V  E   FY+GF   L     NK+  
Sbjct: 127 NEYLQYKANKINSIYQNGSP------LQQK-IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +AE  + I+RDES+H          G + + + + E       E Q     +L++    E
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELAKAEQE-------ELQNWMYDLLYDLYANE 232

Query: 273 IAYAHETMPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYT 316
             Y HE     + G         Y+++ AN+    +G   LF  T
Sbjct: 233 EKYTHEV----YDGTGWTEEVLTYLRYNANKALMNLGQGALFPDT 273


>gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
 gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
          Length = 319

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 32/282 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V     E   FY+GF   L     NK+  
Sbjct: 127 NEYLQTKAKIINDIYENGTPLQKK-------VASTYLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+  R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
           +    +       E+ M F+   AN+    +G +PLF  + N
Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275


>gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4]
 gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2]
 gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4]
 gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus
           4]
 gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4]
 gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4]
          Length = 302

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 40/302 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W    + +  D    K  N   + +    K    F A +E LV  NI   +     + 
Sbjct: 23  NRWFAAHIVLTKDCGCLKLLN---ERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESH 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y   Q   E VH  T+  I+  L   +    N Y E      ++ AK +W      
Sbjct: 79  DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRD--- 135

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      K A    L +  + +++ EG++F + F  I  L     M GI     YI
Sbjct: 136 -----------KVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYI 184

Query: 228 MRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            RDE LH      + N +  K + P   W +E       +   A  +E A+  E   +G 
Sbjct: 185 SRDELLHTRAASLLYNSMTAKADRPRATWIQE-------LFRTAVEVETAFI-EARGEGV 236

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVT 341
             ++  + +Q+++  A+R    IG  PL+      + P  +M+ +    K+ NFFE   +
Sbjct: 237 TLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMTSI----KQTNFFEQESS 292

Query: 342 EY 343
           +Y
Sbjct: 293 DY 294


>gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
          Length = 316

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 26/276 (9%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +DL  WK+   L+D E+ ++K+ +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           + A+ ++    + +  L    F E++H+ T+  I+ SL        N ++++  I    N
Sbjct: 72  LYALKKNARTQKEKAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYDWMN 123

Query: 161 W--ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
               +Q+     +  +  GT          + V  V  EG+ +Y+ F   L     NK+ 
Sbjct: 124 NDPKMQFKAEKINEVYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +AE  + ++RDES+H  +      Q   E       EF     T L+E    E AY  E
Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEE 236

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              +  +GL     + ++++ AN+    +G    F+
Sbjct: 237 VYSE--IGL-VEDIKTFVKYNANKSLQNMGFGIYFE 269


>gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
 gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
          Length = 333

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 114/288 (39%), Gaps = 29/288 (10%)

Query: 35  LPLKYGWAW---EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           +PL   W     EK L   N    N W+P +VP+ +D+  W +   L ++E+ +  R   
Sbjct: 19  VPLAINWNRLQDEKDLEVWNRLTANFWLPEKVPLSNDVQSWAT---LREEEQTLTIRVFT 75

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145
                +++       ++      P     L   AF EAVH+ ++  I ++L    +  E 
Sbjct: 76  GLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEA 135

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           F    E P + AKA   L+     S P             LQ   +  V  E   FY+GF
Sbjct: 136 FRWSEENPQLQAKARLILEEYDAASDP-------------LQRK-IASVFLESFLFYSGF 181

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
              +      K+   A+  + I+RDE++H  +      +     P       +  + ++L
Sbjct: 182 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALARLPEADQARLKDFAFSLL 241

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E   +E  Y  E   +  +GL     + ++ + AN+    +G E LF
Sbjct: 242 FELYEVEALYTEELYDR--IGLTE-DVKAFLHYNANKALQNLGYEALF 286


>gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           cibaria KACC 11862]
          Length = 320

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    +T++E  ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---MTEEEHYLVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            ++ R +        L    F E+VH+ ++  I  +L        N   E+  I +    
Sbjct: 75  ASLKRSVRTQHEEAVLNNIEFMESVHAKSYSSIFETL--------NTPAEIDEIFSWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  + TG  D  Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NDFLQYKAQRINQIYQTG--DDLQKKVASVFL-----ETFLFYSGFYTPLWYLGHNKLNN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L   E QQ    M     LL++    E 
Sbjct: 180 VAEIIKLILRDESVH---GTYIGYKFQLGFNEL--TEDQQSEMKMWMYDLLLDLYNNEEQ 234

Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
             K  + G+    S   ++++ AN+    +G +PLF
Sbjct: 235 YTKHLYDGIGWTESVLTFLRYNANKALMNLGQDPLF 270


>gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 321

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L   E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LPAKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I     +
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFDWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQNKAKIINDIYENG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + +++ K E+   W  +  +Q       +  +L
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDLLYQLYENEENYTKSL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDQVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 327

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 26/315 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
           G  WE+ +      W+ TE     D+ +WK    LT + +   K+ LG     ++L ++ 
Sbjct: 18  GMFWEQNI---RQFWIDTEYIPSKDIDVWKK---LTPEMQETYKKALGGLTLLDTLQSHT 71

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITA 157
            +  I  H+   + +  L      EA+H+ ++  I T++    +  ELF   ++   +  
Sbjct: 72  GMPKILDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQF 131

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA    QY ++L         K    E L       V+ E   FY+GF   L L    +M
Sbjct: 132 KAATIDQYYRSLDK-------KKVSNEELYMSLAASVLLESFLFYSGFFIPLWLAGQGQM 184

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           V  A+  + I+ DES+H  F   +   I  K+ N     +E ++K   +L      E+ Y
Sbjct: 185 VASADIIKKIVADESIHGVFVGLLAQDIFRKLSN----QEEVKKKVVDLLMLLYENELKY 240

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKN 334
             E      VGL A   ++Y+++ AN+    +G E LF+  E NP       ++   + +
Sbjct: 241 TEEIYTD--VGLTA-EVKEYVRYNANKALMNLGFEELFEVKEVNPIVLNGLNLE-TTQHD 296

Query: 335 FFETRVTEYQQGAEL 349
           FF  + T Y++  ++
Sbjct: 297 FFSKKSTNYEKATQI 311


>gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 332

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 123/313 (39%), Gaps = 36/313 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +DL  W   NGL+D ER +  R        +++ A    ++  +     
Sbjct: 43  NFWLPEKVPLSNDLKDW---NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTE 99

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    AF ++VH+ ++  + ++L              PSI A   WA+     L  
Sbjct: 100 HEEAVYTNIAFMQSVHARSYSSVFSTLA-----------NTPSINAAYEWAVN-NDVLQQ 147

Query: 172 PSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              +      +  F +D     V   +   +  Y GF   L       +   A+  + I+
Sbjct: 148 RCRSV----LEHYFGEDPLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLIL 203

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           RD+++H  +      Q  +EN    T E  + +  +L +   LE+ Y+ E   P G +  
Sbjct: 204 RDKAVH-GYYSGYKFQRGLENHPERTAELSEFTHALLEKLFELEVLYSAELYEPLGLM-- 260

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVTEYQ 344
             P   +++++ AN+    +G  P F   E    P +   +    ++N  FF    + Y 
Sbjct: 261 --PDVVKFVKYNANKALMNLGYHPHFAAEETDVSPEILSALTPGADENHDFFSGSGSSYI 318

Query: 345 QG-----AELKWD 352
            G     A+  WD
Sbjct: 319 MGKAEETADTDWD 331


>gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 322

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 24/297 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LTDPEKEAFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTL 169
           +      A  E +H+ ++ +I T+L L   E    L     E P +  K++  +     L
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTL-LPSSETNYLLDKWVIEEPHLKYKSDKIINNYHKL 140

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ 
Sbjct: 141 WGKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILL 193

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DES+H  F G+D    ++ E       +  Q+   +L +    E+AY H       +GL 
Sbjct: 194 DESIHGVFTGMDA-QSLRNELSESEKLQADQEMYKLLDDLYKNEVAYTHSLYDD--IGL- 249

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
           A     Y+++  N+    +G +P F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 250 AEDVLNYVRYNGNKALSNLGFDPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
 gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
          Length = 242

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--- 252
            E + FY  FA   +      M G A+  + I RDE+LHLN    +IN ++         
Sbjct: 69  LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFM 128

Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +E +Q    +  EA   E  +A      G  +GLN     QY+++I N R   +GL 
Sbjct: 129 QIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLP 188

Query: 311 PLF-KYTENPFPWMS 324
             + + T NP PW++
Sbjct: 189 AAYPEATTNPIPWIN 203


>gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 325

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  WK+   LT++E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
                      AF E+VH+ ++  I ++L   +   E F    E   +  KA   L    
Sbjct: 90  TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWAAENEHLQKKAKIVL---- 145

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                S+ TG     ++    L       E   FY+GF   +      K+   A+  + I
Sbjct: 146 -----SYYTGDDPLKKKVASTL------LESFLFYSGFYLPMYWSSHAKLTNTADLIRLI 194

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      +  E+      E ++ +  +L+E    E+AY H ++  G VG
Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESAER-QAELKEYTFNLLYELYENEVAYTH-SLYDG-VG 251

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKN--FFETRVTEY 343
             +   ++++ + AN+    +G EP+F  T  N  P +   +    ++N  FF    + Y
Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAILSALSPNADENHDFFSGSGSSY 310

Query: 344 QQG 346
             G
Sbjct: 311 VIG 313


>gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
 gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
          Length = 325

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 32/305 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 33  VGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGLTLLDTIQGTVGAVSLIPDAL 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
            P     L   AF E+VH+ ++  I ++L     +DE   F    E P +  KA   L+Y
Sbjct: 90  TPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEA--FRWSEENPHLQRKAEIILEY 147

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 148 YR-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIR 192

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+RDE++H  + G      ++   P    +E +  +  +L+E    E+AY  E++  G 
Sbjct: 193 LIIRDEAVHGYYIGYKYQKGLEAVTPER-REELKAYTFDLLYELYDNEVAYT-ESLYDG- 249

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341
           VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    +
Sbjct: 250 VGLTE-DVKKFLRYNANKALLNLGYEALFPKDETDVNPAILSALSPNADENHDFFSGSGS 308

Query: 342 EYQQG 346
            Y  G
Sbjct: 309 SYVIG 313


>gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes MGAS8232]
 gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
 gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
 gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
 gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQEKARIINNIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
          Length = 320

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 76  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 128 NEFLQEKARIINNIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 181 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 240

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 241 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 276


>gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18]
 gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18]
          Length = 325

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 23/266 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  WK+   LT++E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
                      AF E+VH+ ++  I ++L   +   E F    E   +  KA   L    
Sbjct: 90  TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWASENEHLQKKAKIVL---- 145

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                S+ TG     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 146 -----SYYTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADLIRLI 194

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           +RDE++H  +      Q   +       E ++ +  +L+E    E+AY H ++  G VG 
Sbjct: 195 IRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNLLYELYENEVAYTH-SLYDG-VGW 252

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
            +   ++++ + AN+    +G EP+F
Sbjct: 253 -SEDVKKFLHYNANKALMNLGYEPMF 277


>gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
 gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
          Length = 293

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 24/251 (9%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           +Y +   PE        A  E  H   + +++  LGL+E     M+ ++  I    N  +
Sbjct: 47  LYCYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEIEPLMN-RI 100

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222
           +Y +     SF         EF+  L +F +  E +  +  F  ++S  +  N   GI+ 
Sbjct: 101 RYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISN 155

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A   E         +
Sbjct: 156 AVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEE 215

Query: 283 GFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEVIDLKKEKN 334
           G +  +   + E Y++   N     +GLEP       L K TE    W    I   KE +
Sbjct: 216 GDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETE----WFDIEILSTKETD 271

Query: 335 FFETRVTEYQQ 345
           FF  R T+Y +
Sbjct: 272 FFNKRSTDYSK 282


>gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
 gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
          Length = 324

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 19/307 (6%)

Query: 45  KYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           ++  A N  +W+ TEV    D   + +   L   E+  +K +L   A  E  V  +    
Sbjct: 20  QFTEAINKAYWVHTEVDFTADTQDFHAHLSLA--EKTAVKNSLLAIAQIEVAV-KSFWGN 76

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           IY H   PE        A  E  HS  +  ++  LG ++   F    +VP I  + ++  
Sbjct: 77  IYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLLDVPVIRRRVDY-- 132

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222
                LS+    T ++D +++++  L +F ++ E +  ++ FA +LS  R    M  ++ 
Sbjct: 133 -----LSNVLKDTKSQD-NRKYMVSLILFSILIENVSLFSQFAILLSFTRFKGYMKNVSN 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
              +   DE +H N GI +IN+I+ E P  + +E     R  + ++  +E         +
Sbjct: 187 IIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESDILDWIFEE 246

Query: 283 GFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFET 338
           G +  +       +M+F  +    QI +  +F      +    W  E +      +FF  
Sbjct: 247 GEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEEEVFANSLDDFFAK 306

Query: 339 RVTEYQQ 345
           R  EY +
Sbjct: 307 RPVEYTK 313


>gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit,
           partial [Hydra magnipapillata]
          Length = 261

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 34/212 (16%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95
           K+   W+ Y    + +W   E+   +D       + L  D+ +   IKR L FFA ++S+
Sbjct: 57  KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149
           V  N    I + LS    ++  +   F+   E  HS  +  ++  +  D     EL N +
Sbjct: 112 VNIN----IKKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           + V SI     WA ++  +     ++               V + +FEG+ F   FA I 
Sbjct: 168 KTVASIKRMIQWAQRWINSKRRIGYS--------------IVVFCIFEGLMFSGAFAGIY 213

Query: 210 SLGRA---NKMVGIAEQYQYIMRDESLHLNFG 238
            L +    + M G+ +    I +DE +H  FG
Sbjct: 214 WLKKILGEDIMKGLIQSNNLIAKDEGMHTIFG 245


>gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
 gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
          Length = 320

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+ +I     +
Sbjct: 76  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  +A Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 128 NDYLQKKAKIINDIYENG--NALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q   R  +++  L ++    E 
Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235

Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
             K  + G+        ++++ AN+    +G +PLF  T N
Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276


>gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
 gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
          Length = 323

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 38/272 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  WK    LT +E+ +  R    L    + ++ V    ++A  R  
Sbjct: 32  NFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYT 166
             P     L   AF EAVH+ ++  + ++L       E F    E P +  KA   L+  
Sbjct: 87  -TPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAEENPLLQKKAQLVLEDY 145

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                P                  V  V  E   FY+GF   +      K+   A+  + 
Sbjct: 146 LAQDDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRL 191

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-----TLLEIAYAHETMP 281
           I+RDE++H  + I    Q+       + +  QQ+   +  EA     +L EI   +    
Sbjct: 192 IIRDEAIH-GYYIGYKFQLA------FNELSQQEQAKVKDEAYSLMFSLYEIESQYTESL 244

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              VGL     + ++ + AN+    +G EPLF
Sbjct: 245 YDQVGLTE-DVKHFLHYNANKALMNLGFEPLF 275


>gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 100

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           + ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF 
Sbjct: 2   KDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFD 60

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQG 346
           +M E I L+ + NFFE R   YQ+G
Sbjct: 61  FM-ENISLQGKTNFFERREANYQKG 84


>gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 323

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 36/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  WK    LT++E+ +  R    L    + ++ V    ++A  R  
Sbjct: 32  NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86

Query: 109 SNPECRQYLLRQAFEEAVH----SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             P     L   AF EAVH    S  F  + T+  +DE   F    E P +  KA   L+
Sbjct: 87  -TPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEA--FRWADENPLLQKKAQLVLE 143

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                  P                  V  V  E   FY+GF   +      K+   A+  
Sbjct: 144 DYLAQGDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLI 189

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPK 282
           + I+RDE++H   G  +  + ++    L  +E Q K +   +    +L EI   +     
Sbjct: 190 RLIIRDEAIH---GYYIGYKFQLAFNELSEQE-QAKVKDEAYSLMFSLYEIESQYTESLY 245

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             VGL     + ++ + AN+    +G EPLF
Sbjct: 246 DQVGLTE-DVKHFLHYNANKALMNLGFEPLF 275


>gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
 gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
          Length = 391

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 36/305 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     + + E+++   NL +    +++      LA     S+   
Sbjct: 49  WRPEEVDLSIDRMQYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++   AF E +HS ++ +I  +L +D  + F+      +I  ++    +Y   L    
Sbjct: 106 ETWIETWAFSETIHSRSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAEC 165

Query: 170 ------------------SSPSFTTGTKDADQEFLQDLFVFYV------VFEGMWFYTGF 205
                                S     +   ++  +     Y+        E + FY  F
Sbjct: 166 HELKNIVLKIEMMTSHGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSF 225

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKS 261
               +     KM G A+  + I RDE+LH       I   Q+  ++P +     ++++++
Sbjct: 226 TFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEA 285

Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +  E    E  +A      G V G+   S   Y++ + ++R   +GL+  FK + NP+
Sbjct: 286 TQIFLEVYEQEKEWAEHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPY 345

Query: 321 PWMSE 325
           PWM++
Sbjct: 346 PWMNK 350


>gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
 gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
          Length = 320

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 32/282 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAKEKDLVGKVFGGLTLLDTMQSQTGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I     +
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V     E   FY+GF   L     NK+  
Sbjct: 127 NKYLQTKAKIINDIYENGTPLQKK-------VASTYLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+  R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
           +    +       E+ M F+   AN+    +G +PLF  + N
Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275


>gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 319

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGTALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            ET+  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TETLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 327

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 32/300 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE----SLVANNIVLAIYRHLS 109
           W+  E+P+  D  +W ++  LT++E+ + K+ L      +    SL   NI ++I     
Sbjct: 34  WIDEEIPLSGDKLIWAAE--LTENEKDVYKKVLVGLTLLDTHQGSLGMTNIAMSI----D 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQ 167
           NP     L      E +H+ ++  I ++L   +   ELF    + P +  K      + +
Sbjct: 88  NPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEIEELFKWSEQNPELQKKMEIISHHYE 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            +            D E L    V  V  E   FY+GF  +L L     M+   E    I
Sbjct: 148 NIQ-----------DDESLYMAMVASVFLESFLFYSGFYYMLLLAGKGMMINSGEIINLI 196

Query: 228 MRDESLH-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H L  G+  +   K  N     KE ++K   +L E    EI Y      K  +G
Sbjct: 197 IRDEAIHGLYIGVLSMEIFKTFNEEK-QKEMKEKVICLLRELMANEIKYTELIYSK--IG 253

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L      +++++ AN+    +G E  +  T+   NP  + + +    K  +FF T+   Y
Sbjct: 254 L-VEDVNRFLEYNANKALQNLGFENEYSTTDKDINPIVF-NGLKTTTKSHDFFSTKGNGY 311


>gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 320

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 27/296 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D+  WK       + +   K+  G     +++  N  +  I ++  + + 
Sbjct: 31  WFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEIAKYTPDFQE 85

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  L      EA+H+ ++ YI T+L  +  E+  ++  V     + N  LQY        
Sbjct: 86  KAVLTVFGSFEAIHAKSYSYIFTTLCTNT-EIDEVFEWV-----QKNEFLQYKANRIGEV 139

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           +T   K+ D E L       V+ E   FY+GF   L LG    +   AE    I+RDES+
Sbjct: 140 YT-AIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAEVISLILRDESI 198

Query: 234 H-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFVGLN 288
           H +  G    N  K      +T+E QQ+     +E  L     E+ Y  +   +   GL 
Sbjct: 199 HGVAVGFFAQNIFKT-----FTEEKQQELTLWGYEYLLDLYQNEMKYTDDLYAE--TGL- 250

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
           +P  ++Y+++ AN+    +GL+ +F   E NP   M+ + +     +FF  + + Y
Sbjct: 251 SPEVKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGSTY 305


>gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 327

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 27/267 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ T VP+ +D+  W     L+D E+ +I +  G     +++ + + V ++   +     
Sbjct: 32  WLDTRVPVGNDVNDWAK---LSDMEQDLINKVFGGLTLLDTVQSESGVHSLLDDVRTQHE 88

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKANWALQYTQTLSS 171
              L   AF EAVH+ ++  I ++        FN   E+ +I      N  LQY   + +
Sbjct: 89  EAVLNNIAFMEAVHAKSYSTIFST--------FNTPTEIDNIFEWVATNKRLQYKANIIN 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230
             +  GT    +          V+ E   FY+GF   L  LG A KMV  AE  + I+RD
Sbjct: 141 DIYRNGTPLQKKSA-------SVLLESFLFYSGFYTPLRYLGEA-KMVNTAEIIKLIIRD 192

Query: 231 ESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  + I    Q+     P    KE +Q    +  +    E  Y  E   +  +G   
Sbjct: 193 ESVHGTY-IGYKYQLGFNQLPETEQKEMEQWVIDLAFKLWENETQYTAELYSE--IGW-T 248

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT 316
                ++++  N+    +G+ PLF  T
Sbjct: 249 KDVNTFLEYNLNKALANLGMNPLFPTT 275


>gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 269

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G
Sbjct: 156 NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLG 215

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+
Sbjct: 216 EEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQK 250


>gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM]
 gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella
           anatipestifer RA-GD]
          Length = 324

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 23/309 (7%)

Query: 45  KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           +Y+ A N + W+ +EV    D+  + S+  L   E+  +K  L   A  E  V       
Sbjct: 20  QYIEAINKSFWVHSEVDFTADIQDFHSQ--LEPHEKNAVKNALLAIAQIEVSV-KTFWGN 76

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           +Y HL  PE        A  E  HS  +  ++  LG +  E  N+  E P+I  + ++  
Sbjct: 77  LYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYN-NEFLNVI-ENPAIRKRIDFL- 133

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222
             T  L + + +T      +E++  L +F ++ E +  ++ FA ILS  R    M  ++ 
Sbjct: 134 --TDVLRNSNSSTP-----KEYVSSLLLFSILIENVSLFSQFAIILSFTRFKGYMKNVSN 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
              +   DE +H N GI +IN+IK E P L  +E  +    ++  +  LE          
Sbjct: 187 IIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSVELEAEILDWIFEM 246

Query: 283 GFVGLNAPSCEQYMQFIANR---RCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
           G   L+  S +Q + F+  R      +IG+  +F  TE    P  W  E +      +FF
Sbjct: 247 G--DLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEEEVFANSLDDFF 304

Query: 337 ETRVTEYQQ 345
             R  +Y +
Sbjct: 305 AKRPVDYTK 313


>gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 324

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W   N LT  E+ +  R        +++      +++     
Sbjct: 32  VNNFWLPEKVPLSNDVQSW---NTLTPAEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E  ++  KA   + Y Q
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      ++  +P    +E +  +  +L E    E+ Y H+      VG
Sbjct: 194 IRDEAVHGYYIGYKFQRGLEAVSPER-RQEIKDYTFELLFELYENEVQYTHDLYDG--VG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L A   ++++ + AN+    +G E +F
Sbjct: 251 L-AEDVKKFLHYNANKALMNLGYEAMF 276


>gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0012]
          Length = 321

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L++ E+  +    G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSNLEKTTVGYVFGGLTLLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P     + +     +L+E    E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G++PLF  T N
Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275


>gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
 gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
          Length = 367

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 128/306 (41%), Gaps = 32/306 (10%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y    +  W P EV +  D A + +   LT  E+ + + NL      +S+       A  
Sbjct: 43  YEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAAPFEAFG 99

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW---- 161
              S PE +  +L    +EA+HS ++ +I+ +   D G +F+   +V  I   A+     
Sbjct: 100 PWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCAHQISTH 159

Query: 162 ---ALQYT-QTLSSPSFTT-GTKDADQEFLQDLFV--------FYVVFEGMWFYTGFAQI 208
               ++Y+   ++  +FT     +A + F + LF         FYV F   W +T F + 
Sbjct: 160 YDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANTLEGIRFYVSFACSWAFTQFQK- 218

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP--HLWTKEFQQKSRTMLH 266
                  KM G A+  + I RDE  HL     ++N++   +P   +  +E + +   M  
Sbjct: 219 -------KMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFL 271

Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS 324
           +    E  +A      G  +GLNA      + ++   R   IG   P     E P PW++
Sbjct: 272 DVGNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWIN 331

Query: 325 EVIDLK 330
           E ++ K
Sbjct: 332 EWLNNK 337


>gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4]
 gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4]
          Length = 302

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 113/299 (37%), Gaps = 34/299 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W    + +  D    K  N   + +    K    F A +E LV  NI   +     + 
Sbjct: 23  NRWFAAHIVLTKDCGCLKLLN---ERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESH 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y   Q   E VH  T+  I+  L   +    N Y E      ++ AK +W      
Sbjct: 79  DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADGALQAKISWLRD--- 135

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      K A    L +  + +++ EG++F + F  I  L     M G+     YI
Sbjct: 136 -----------KVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE LH      + N +         +  Q+  RT    A  +E A+  E    G   +
Sbjct: 185 SRDELLHTRAASLLYNSMTAPADRPGAQWIQELFRT----AVEVETAFI-EARGWGVTLV 239

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +  Q+++  A+R    IGL PL+      + P  +M+ +    K+ NFFE    +Y
Sbjct: 240 DVQAIRQFLEATADRILGDIGLPPLYGTPPPRDCPLTYMTSI----KQTNFFEQESADY 294


>gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mutans UA159]
 gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
 gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus
           mutans UA159]
 gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
          Length = 319

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAAEKDLVGKVFGGLTLLDTMQSQSGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEGIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  +A Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 127 NEYLQKKAKIINEIYENG--NALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q + R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQSEFRDWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318
           +    +       E+ M F+   AN+    +G +PLF  T N
Sbjct: 234 LYTQTLYDPVGWTEEVMTFLRYNANKALMNLGQDPLFPDTAN 275


>gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
 gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 319

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  DA Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris]
 gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris]
 gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris]
 gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris]
 gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris]
 gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris]
 gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris]
 gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris]
 gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris]
 gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris]
 gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris]
 gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris]
 gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris]
 gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris]
 gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris]
 gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris]
 gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris]
 gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris]
 gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris]
 gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris]
 gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris]
 gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris]
 gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris]
 gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris]
 gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris]
 gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris]
 gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris]
 gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris]
 gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris]
 gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris]
 gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris]
 gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris]
 gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris]
 gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris]
 gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris]
 gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris]
 gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris]
 gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris]
 gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris]
          Length = 175

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M+ D    +  N L+  E+      +G  A+ +S      +  +  ++++P    
Sbjct: 1   PDEVDMKGD---ARQYNELSAREKNAYDSIIGLLATLDS-PQTRFIYNVAEYITDPAAHA 56

Query: 116 YLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  +E +H+ ++ Y++ S+ GL D+  +F + R  P+I  K N  +         +
Sbjct: 57  NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTII-KRNAPIM-------GA 108

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           +    +D   E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  
Sbjct: 109 YDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168

Query: 234 HLNF 237
           H  F
Sbjct: 169 HSKF 172


>gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           AR1]
          Length = 392

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A +    Y   L   
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164

Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205
            +    K         +AD++ ++D                    +V+   E + FY  F
Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q+
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284

Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317
           +  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     +
Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344

Query: 318 NPFPWMSEVID 328
           +P+PW+ E ++
Sbjct: 345 HPYPWIREYLN 355


>gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
 gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
          Length = 392

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A +    Y   L   
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164

Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205
            +    K         +AD++ ++D                    +V+   E + FY  F
Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q+
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284

Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317
           +  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     +
Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344

Query: 318 NPFPWMSEVID 328
           +P+PW+ E ++
Sbjct: 345 HPYPWIREYLN 355


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 23/295 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+ DD   W +   L+ +E+ + ++ L      +++  +  +  + +H+ + + 
Sbjct: 33  WVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLLSQHIESLQA 89

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  +      E +H+ ++  I ++L   E   ELF+  R  P         LQ  QT   
Sbjct: 90  KAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEP--------VLQEKQTFVH 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +  G +D    +L       V+ E   FY+GF   L L    +M    E    I+RDE
Sbjct: 142 RRYL-GVQDEQSLYLG--LAASVLLESFLFYSGFFYPLLLAGQGRMTSSGEIINLIIRDE 198

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           S+H  +   +  ++    P    K  ++   +ML     LE  Y+   M    +GL   +
Sbjct: 199 SIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSR--MLYTPLGLTE-A 255

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
              + ++ A++    +GLEP F  +    NP   ++ +    K  +FF T+   Y
Sbjct: 256 VVTFSRYNADKALMNLGLEPYFGVSAEAVNPV-VLAGLSTHTKNHDFFSTKGNGY 309


>gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27]
          Length = 392

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A +    Y   L   
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164

Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205
            +    K         +AD++ ++D                    +V+   E + FY  F
Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q+
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284

Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317
           +  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     +
Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344

Query: 318 NPFPWMSEVID 328
           +P+PW+ E ++
Sbjct: 345 HPYPWIREYLN 355


>gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi]
 gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi]
          Length = 288

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+   W+ Y  A  + W   EV +  D   W++   L D ER  I R L FFA+S+
Sbjct: 58  IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            +V  N+V    + +  PE R +   Q   E +HS  +  +I +   D+ +
Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMIDTYIRDQKQ 165



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +K  +M +     +  Y  E +P   +G+N     QY++++A+    ++    ++ +++N
Sbjct: 186 KKFTSMFNACIDAKQEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDN 244

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF +M E I ++ + NFFE RV+EYQ+   L
Sbjct: 245 PFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 274


>gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2]
          Length = 301

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 25/305 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y +   N W+  ++   +D   +K    L +  +   K    F   +E LV  N+   I 
Sbjct: 17  YRTVTENRWLEGQISFLND---YKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNLFDMIE 73

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
           R L +P+   Y + Q   E VH+ T++ I+ ++  D  E         +I   A++ L+ 
Sbjct: 74  R-LEDPDVIHYYIEQMSIECVHARTYRRIL-NIFYDNDE--------KAIMCAADFYLKD 123

Query: 166 TQTLSSPSFTTGT-KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
              L   SF   T ++ D   L    +  ++ EG++F + F  I  L R     G  E  
Sbjct: 124 PALLKKISFLEKTIRECDT--LGKKIIVLILIEGIFFLSSFVSIAML-RTIGFDGTTEAN 180

Query: 225 QYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            YI RDES+H      + +N +  EN   ++  +   S  +  E   +           G
Sbjct: 181 TYICRDESIHTTAATKLYLNYVTPENRPSYSFIYSLFSDVIRIEKEFI------NAKVDG 234

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
              +N       ++ +A++   +I ++PL+  T+ P      +  ++K   FFE R TEY
Sbjct: 235 VGLINKKVIFDTLEGVADQLLARINMQPLYA-TQIPNNCPLPLSTIEKNVCFFEKRNTEY 293

Query: 344 QQGAE 348
               E
Sbjct: 294 CTRLE 298


>gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           aurescens TC1]
 gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           aurescens TC1]
          Length = 324

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 115/274 (41%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W +   LT DE+ +  R        +++      +++     
Sbjct: 32  VNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P         AF E+VH+ ++  I ++L     E+ + +R   E  ++  KA   + Y 
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTKEIDDAFRWSLENENLQKKAQIVMDYY 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           Q              D    +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 148 Q-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 192

Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           I+RDE++H  +       G++ +++ +        +E +  +  +L E    E+ Y H+ 
Sbjct: 193 IIRDEAVHGYYIGYKFQKGLEKVSEAR-------KQEIKDYTFELLFELYENEVQYTHDL 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                VGL A   ++++ + AN+    +G E +F
Sbjct: 246 YDG--VGL-AEDVKKFLHYNANKALMNLGYEAMF 276


>gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
 gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
          Length = 320

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
 gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
          Length = 319

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGTALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            ET+  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TETLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
 gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
          Length = 320

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 304

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 53/308 (17%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104
           N W P+++ + +D          +D+ RL+   +         F   +ESLV  NI   +
Sbjct: 26  NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 74

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160
            +  SN +   Y   Q   E +H   +  I+    G + G+L    +++    ++  K +
Sbjct: 75  VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDATLAKKID 134

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W     +          T  A++  L      ++V EG++F + F  I        M G+
Sbjct: 135 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGIMRGV 180

Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
                YI RDE LH      + N +  + E+P +           +  EA  +E  +   
Sbjct: 181 CLANDYISRDELLHTRAASLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 233

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335
           +  +    +N    EQ++Q  A+R    I + PLF        P  + S      K  NF
Sbjct: 234 SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSYTS-----AKSVNF 288

Query: 336 FETRVTEY 343
           FE   +EY
Sbjct: 289 FERDNSEY 296


>gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
 gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
          Length = 320

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W   N LT  E+ +  R       
Sbjct: 13  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 67  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRW 125

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +      K+   A+  + I+RDE++H  + G      + + +     +E +  +  +L E
Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDAT-RQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308


>gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 320

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W   N LT  E+ +  R       
Sbjct: 13  NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P         AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 67  LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRW 125

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E P++  KA   +QY +              D+   +   V   + E   FY+GF   
Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +      K+   A+  + I+RDE++H  + G      + + +     +E +  +  +L E
Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDAT-RQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308


>gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 314

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 53/308 (17%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104
           N W P+++ + +D          +D+ RL+   +         F   +ESLV  NI   +
Sbjct: 36  NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 84

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160
            +  SN +   Y   Q   E +H   +  I+    G + G+L    +++    ++  K +
Sbjct: 85  VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDATLAKKID 144

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W     +          T  A++  L      ++V EG++F + F  I        M G+
Sbjct: 145 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGIMRGV 190

Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
                YI RDE LH      + N +  + E+P +           +  EA  +E  +   
Sbjct: 191 CLANDYISRDELLHTRAASLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 243

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335
           +  +    +N    EQ++Q  A+R    I + PLF        P  + S      K  NF
Sbjct: 244 SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSYTS-----AKSVNF 298

Query: 336 FETRVTEY 343
           FE   +EY
Sbjct: 299 FERDNSEY 306


>gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2]
 gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate
           reductase subunit beta; AltName: Full=Ribonucleotide
           reductase small subunit
 gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta]
 gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 329

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 22/299 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +    N  +  +  H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPIVAEHVDGHQR 86

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   E+F   +    +  KA   +   +T+ 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKARTIVSVYKTI- 145

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   K  D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 146 --------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIINLIIRD 197

Query: 231 ESLH-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           E++H +  G+      K + P    KE    +  +L E    E+ Y  +   +  VGL A
Sbjct: 198 EAIHGVYVGLLAQEIYKKQTPQK-QKELYAWALNLLQELYENELEYTEDVYDQ--VGL-A 253

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
           P  ++++++ AN+  + +G +  F+  E+  P +   ++ K K  +FF T+   Y++  
Sbjct: 254 PDVKKFIRYNANKALNNLGFDHWFE-EEDVNPIVINGLNTKTKSHDFFSTKGNGYKKAT 311


>gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
 gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
          Length = 319

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
 gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++    G     ++L + + +
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSEPEKQLVGHVFGGLTLLDTLQSESGI 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKA 159
             + +    P     L    F E+VH+ ++  I ++L   +   E+F      P + AKA
Sbjct: 76  DQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFEWTNTNPYLQAKA 135

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                      +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 136 EKI--------NEIYKHGTPLQKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+  +  P     E +     +L E    E  Y  E
Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFQALPEAEQAELKDWMYGLLFELYENEENYTDE 239

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
               G +G  A   + ++++ AN+    +G +PLF  + N
Sbjct: 240 LY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSAN 276


>gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 371

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 25/310 (8%)

Query: 45  KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           +++ A N + W+ +EV    D+  + S+  L   E+  +K  L   A  E  V       
Sbjct: 67  QFVEAINKSFWVHSEVDFTADVQDFHSQ--LEPHEKHAVKNALLAIAQIEVSV-KTFWGN 123

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-- 161
           +Y HL  PE        A  E  HS  +  ++  LG ++ E  N+  E+P++  +  +  
Sbjct: 124 LYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYND-EFLNVI-EIPAVKGRIEFLG 181

Query: 162 -ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219
            AL++  + ++P          +E++  L +F ++ E +  ++ FA ILS  R    M  
Sbjct: 182 NALKHANS-ATP----------KEYVSALLLFSILVENVSLFSQFAIILSFTRFKGFMKN 230

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           ++    +   DE +H N GI +IN+I+ E P L T    +   T++ E+   E       
Sbjct: 231 VSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESIAREGDILSWI 290

Query: 280 MPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335
              G +  ++      +M++  +    +I ++  +  T     P  W  E +      +F
Sbjct: 291 FELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEEEVFANSLDDF 350

Query: 336 FETRVTEYQQ 345
           F  R  +Y +
Sbjct: 351 FAKRPVDYTK 360


>gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 23  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 77  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 129 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 237

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272


>gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
 gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
          Length = 321

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 23  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 77  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 129 NPFLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 237

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272


>gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
 gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
          Length = 389

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 36/308 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156
             ++    F E +HS ++ +I+ +L  D  ++F+                  Y +V   T
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVLVKT 164

Query: 157 AKANWALQYTQTLSSPSF--------TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
            +   A++  + + S  F           TK A  + L          E + FY  FA  
Sbjct: 165 REYQNAVEDYEGILSEGFRKEELGKVVECTKRALMKSLYLCLHVINALEAIRFYVSFACT 224

Query: 209 LSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRT 263
            +  +  + M G A+  ++I RDE LHL     +I Q+++  +   W K   E +Q++  
Sbjct: 225 FNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVD 284

Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPF 320
           +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     ++P+
Sbjct: 285 IFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPY 344

Query: 321 PWMSEVID 328
           PW+ E ++
Sbjct: 345 PWIREYLN 352


>gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
          Length = 322

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 125/303 (41%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  WK+ N    DE+LM  R        +++      +++     
Sbjct: 30  TGNFWLPEKIPLSNDIPSWKTLNA---DEKLMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   E   E F        +  KA+  L Y  
Sbjct: 87  TPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSENNEFLQKKAHIVLDYYH 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       DA++       V   + E   FY+GF   +      K+   A+  + I
Sbjct: 147 ----------GNDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q+ + E+     +E +  + ++L +    E+ Y  ET+    +G
Sbjct: 192 IRDEAVH-GYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYDNEVLYT-ETLYDT-LG 248

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++ + AN+    +G E LF   E   NP    +     ++  +FF    + Y
Sbjct: 249 L-TEDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSPAAEENHDFFSGSGSSY 307

Query: 344 QQG 346
             G
Sbjct: 308 TIG 310


>gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
 gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
          Length = 320

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTDT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAQIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKDWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T46]
 gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF2; AltName: Full=Ribonucleoside-diphosphate
           reductase nrdF2; AltName: Full=Ribonucleotide reductase
           R2-2 small subunit
 gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium
           tuberculosis]
 gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2
           [Mycobacterium tuberculosis H37Ra]
 gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2
           [Mycobacterium tuberculosis F11]
 gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis W-148]
 gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 324

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 133/328 (40%), Gaps = 45/328 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W +   LT  E+ +  R       
Sbjct: 17  NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P     L   AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E  ++  KA   LQY +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENRNLQRKAEIVLQYYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H  +       G+ +++ +          E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   N
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P    +   +  +  +FF    + Y  G
Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312


>gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 319

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 26/302 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  W++   L  DE+ M  R        ++L      +++     
Sbjct: 27  TGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L L   E+   +R      +  N ALQ    +
Sbjct: 84  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQRKAQI 137

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S+  G  DA++       V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 138 IK-SYYDG-DDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q+ + E+      + +  + ++L+E    E  Y  +   P G    
Sbjct: 191 DEAVH-GYYIGYKYQLAVGESTQERRDDLKDYTYSLLYELYENEEQYTEDLYDPLGLT-- 247

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++++ AN+    +G E LF +     NP    +   +  +  +FF    + Y 
Sbjct: 248 --EDVKKFLRYNANKALMNLGYEALFPHDATDVNPAILAALSPNADENHDFFSGSGSSYV 305

Query: 345 QG 346
            G
Sbjct: 306 MG 307


>gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU121]
          Length = 324

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  I  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSEAEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L + +  E P +  K++  ++    L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIENYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   FY+GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      +   Q+   +L E    E++Y H  +    +GL A
Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQRADQEMYKLLKELYDNEVSYTH--LLYDDIGL-A 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 324

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 40/305 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   LT +E+   K+ L      ++  A++ +  I  H  +   
Sbjct: 25  WVETEFKVSKDIASWKT---LTPEEQDTFKKALAGLTGLDTHQADDGMPLIMLHTKDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +      A  E +H+ ++ +I T+L             +PS  ++ N+ L  T  L  P 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTL-------------LPS--SETNYLLD-TWVLEEPH 125

Query: 174 FTTGTKD---------ADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
               +           A +  + D +   V  V  E   FY+GF   L L    +M    
Sbjct: 126 LKFKSDKIVGNYHKLWAKEASVYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGRMTTSG 185

Query: 222 EQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           E  + I+ DES+H  F G+D    ++ E      +   Q    +L E    E++Y H+  
Sbjct: 186 EIIRKILLDESIHGVFTGLDA-QHLRNELSENEKQRADQHMYKLLEELYKNEVSYTHKLY 244

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFET 338
               +GL A     Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  
Sbjct: 245 DD--IGL-AEDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSV 299

Query: 339 RVTEY 343
           +   Y
Sbjct: 300 KGDGY 304


>gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 330

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRH 107
             N W+P +VP+ +DL  W + N L     + +   L    + +  V    +L  A+  H
Sbjct: 38  TGNFWLPEKVPVSNDLKSWSTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVTLH 97

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165
                    L   AF E+VH+ ++  I  +L   +   E F    E  ++  KA   L Y
Sbjct: 98  -----EEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIILTY 152

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                      G     ++      V   + E   FY+GF   +      K+   A+  +
Sbjct: 153 YD---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIR 197

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKG 283
            I+RDE++H  + G      +  E+P    +E ++ +  +L+E    EIAY  +   P G
Sbjct: 198 LIIRDEAVHGYYIGYKFQQALAKESPAR-QEELKEYTFDVLYELYENEIAYTEDLYDPLG 256

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +        ++++++ AN+  + +G E LF   E
Sbjct: 257 WT----EDVKRFLRYNANKALNNLGYEALFPADE 286


>gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2]
 gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 325

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 120/299 (40%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D    +   GLTD+E    +    F ++++ LV  N+   +       
Sbjct: 41  NRWLESELVFAGD---EEDVGGLTDEELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 96

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  ++G+    Y  R +  P+I  K +W     Q
Sbjct: 97  DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREYVARTIHHPAIRVKVDWLEARVQ 156

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 157 ACES--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 202

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N   +   H   K   ++   +  EA  +EI +     P     L
Sbjct: 203 SRDEAVHTTASCYIYNNY-LAGHH---KPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 258

Query: 288 N---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +     + E Y++F A+R    I ++PLF        +   ++  +K  NFFE R T Y
Sbjct: 259 DAAALAAIENYVRFSADRLLALIRMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAY 317


>gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
 gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
          Length = 321

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 23  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 77  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 129 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 237

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272


>gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
 gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTDT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAQIINEIYQNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPQDE-QEKLKDWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 335

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT +E+ +  R        +++      +++     
Sbjct: 43  TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 99

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L       + F    E P++  KA   L Y +
Sbjct: 100 TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDYYK 159

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 160 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWASRAKLTNTADVIRLI 204

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ + + + E       E +  +  +L E    E+ Y  +  
Sbjct: 205 IRDEAVHGYYIGYKYQRGLERVTEAERE-------ELKNYTFELLFELYDNEVEYTQDLY 257

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 258 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 314

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 315 GSGSSYVIG 323


>gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
 gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 28/278 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G     +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGNALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    + F++    +L+     E  Y  E
Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYT-E 237

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           T+  G VG      + ++++ AN+    +G + LF  T
Sbjct: 238 TLYDG-VGW-TEEVKTFLRYNANKALMNLGQDSLFPDT 273


>gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1056]
 gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1059]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NSYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae ATCC 700669]
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1058]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 30

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRML 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25


>gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus]
          Length = 150

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA+WAL++           G K+A      +  V +   EG++F   FA IL L
Sbjct: 1   MPCVKKKADWALRWI----------GDKEAA---YGERVVAFAAVEGIFFSGSFASILWL 47

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  A  +
Sbjct: 48  KKRGLMPGLTFSNELISRDEGLHWDFACLMFK-------HLAHKPSEQRVKEIITTAVRI 100

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296
           E  +  E +P   +G++    +QY+
Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125


>gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
 gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
          Length = 326

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 29/269 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  WK+      D  + +   L    + +  V    ++   + L 
Sbjct: 34  TSNFWLPEKVPLSNDVQSWKTLTAEEQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLH 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165
                  +   AF E+VH+ ++  I ++L     +DE   F   +E   +  KA+  L+Y
Sbjct: 94  EEAVYTNI---AFMESVHAKSYSSIFSTLSSMKQIDEA--FRWSKENEHLQRKADIVLRY 148

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 149 YK-------------GDDPLKKK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADLIR 193

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+RDE++H  + G      +  E+P    +E +  +  +L E    E+AYA        
Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLLQESPQR-QQELKDYTYDLLDELYENEVAYAEALYDS-- 250

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           VG      ++++ + AN+  + +G E LF
Sbjct: 251 VGW-TEDVKKFLHYNANKALNNLGYEALF 278


>gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  +A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQEKARIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK353]
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLSFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 323

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 124/281 (44%), Gaps = 34/281 (12%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+  E+ MI +  G     ++L + + +
Sbjct: 25  TWEK---LTEQFWLDTRIPLSNDLDTWRT---LSAREQDMIGKVFGGLTLLDTLQSEDGM 78

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            ++   +             F E+VH+ ++  I ++L        N  +E+  I A  + 
Sbjct: 79  ESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTPKEIDKIFAWTRE 130

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218
           N  +QY     +  +  GT D  ++      V  V  E   FY+GF A +  LG   K+ 
Sbjct: 131 NEFIQYKANRINGIYQNGT-DLQRK------VASVFLESFLFYSGFYAPLWYLGNG-KLP 182

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +AE  + I+RDES+H   G  +  + +I    L +KE Q+  +      +LL   Y +E
Sbjct: 183 NVAEIIKLILRDESVH---GTYIGYKFQIAFNQL-SKEEQEDMQNWAF--SLLFELYENE 236

Query: 279 TMPKGFVGLNAPSCEQ---YMQFIANRRCHQIGLEPLFKYT 316
                ++  +    E    ++++ AN+    +G +PLF  T
Sbjct: 237 AKYSEYIYDDLGWTEDVKIFLRYNANKALQNLGFDPLFPDT 277


>gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
          Length = 330

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRH 107
             N W+P +VP+ +DL  W + N L     + +   L    + +  V    +L  A+  H
Sbjct: 38  TGNFWLPEKVPVSNDLKSWSTLNELEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVTLH 97

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165
                    L   AF E+VH+ ++  I  +L   +   E F    E  ++  KA   L Y
Sbjct: 98  -----EEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIILTY 152

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                      G     ++      V   + E   FY+GF   +      K+   A+  +
Sbjct: 153 YD---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIR 197

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKG 283
            I+RDE++H  + G      +  E+P    +E ++ +  +L+E    EIAY  +   P G
Sbjct: 198 LIIRDEAVHGYYIGYKFQQALAKESPAR-QEELKEYTFDVLYELYENEIAYTEDLYDPLG 256

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +        ++++++ AN+  + +G E LF   E
Sbjct: 257 WT----EDVKRFLRYNANKALNNLGYEALFPADE 286


>gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
 gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 224

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D     +  V +   EG++    +A +  L     M G+A   + I RD   + +F   +
Sbjct: 50  DDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLL 109

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
                    HL TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+
Sbjct: 110 F-------AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVAD 162

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                 G E  +    NPF +M +V    K   FFE +V++YQ+ +++
Sbjct: 163 GLLQGFGNEKYYNAV-NPFEFMEDVATAGK-TTFFEKKVSDYQKASDM 208


>gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
 gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
          Length = 334

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 125/303 (41%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L +DE+ +  R        +++  +   +++     
Sbjct: 42  VGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVSLIPDAL 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDE-GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L G  E  E F    E P++  KA   L+  +
Sbjct: 99  TPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAIVLERYR 158

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 159 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 203

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      +++  P    +E +  + ++L +    E+ Y  +      VG
Sbjct: 204 IRDEAVHGYYIGYKYQRGLQMSTPER-REELKDFTFSLLFDLYENEVEYTQDLYDP--VG 260

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    + Y
Sbjct: 261 LTE-DVKKFLRYNANKALMNLGYEGLFPKDETAVNPAILSALSPNADENHDFFSGSGSSY 319

Query: 344 QQG 346
             G
Sbjct: 320 VIG 322


>gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
 gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
          Length = 320

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
 gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
          Length = 320

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
 gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
          Length = 321

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 76  QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 128 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 236

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 237 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 271


>gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 338

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 36/279 (12%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK  S     W+ T +P+ +D   W+    LT +ER ++ +      + ++L +    
Sbjct: 41  TWEKLTSQF---WLDTRIPVSNDRDDWRI---LTKEERDVVNKAFAGLTALDTLQSEEGA 94

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +        L    F E+VH+ ++  I  SL        N  RE+  I   A  
Sbjct: 95  NVMRDAVRTQHEEAVLNNILFMESVHAKSYSTIFISL--------NTTREIDEIFDWANN 146

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218
           N  LQY     +  +  GT       LQ   V  V  E   FY+GF A +  LG  NK+ 
Sbjct: 147 NEYLQYKARRINEIYQNGTG------LQQK-VASVFLETYLFYSGFYAPLWYLGN-NKLE 198

Query: 219 GIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            +AE  + I+RDES+H   L +   +  NQ+ I+  +    E +     +L +    E  
Sbjct: 199 NVAEIIKLIIRDESVHGTYLGYKFQLGYNQLSIDEQN----ELKDWMYALLFDLMENEEK 254

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           Y  E   +  VG        ++ + AN+    +G EP +
Sbjct: 255 YTEEIYTQ--VGW-TKEVNTFVHYNANKALQNLGFEPFY 290


>gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S]
 gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S]
          Length = 329

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT +E+ +  R        +++      +++     
Sbjct: 37  TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L       + F    E P++  KA   L Y +
Sbjct: 94  TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDYYK 153

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 154 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWASRAKLTNTADVIRLI 198

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ + + + E       E +  +  +L E    E+ Y  +  
Sbjct: 199 IRDEAVHGYYIGYKYQRGLERVTEAERE-------ELKNYTFELLFELYDNEVEYTQDLY 251

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 252 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 308

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 309 GSGSSYVIG 317


>gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5]
          Length = 391

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 134/310 (43%), Gaps = 38/310 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155
             ++    F E +HS ++ +I+ +L  D  ++F+       + +   SI           
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164

Query: 156 ----TAKANW--ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFA 206
                AK N+  ++   Q      +     +A ++ ++ L++  +V+   E + FY  FA
Sbjct: 165 REWENAKENYESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFA 224

Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKS 261
              +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q++
Sbjct: 225 CTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEA 284

Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318
             +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     ++
Sbjct: 285 VDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKH 344

Query: 319 PFPWMSEVID 328
           P+PW+ E ++
Sbjct: 345 PYPWIREYLN 354


>gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           argentinum KCTC 3773]
          Length = 325

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 45/284 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    ++  E+  +    G   + ++L + + +
Sbjct: 26  TWEK---LTQQFWLDTRIPISNDLRHWRGN--MSPQEQKTMNLVFGGLTTLDTLQSQDGL 80

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +     N +    L    F E++H+ ++  I  +L            E   I A  +W
Sbjct: 81  AQLKFDSLNQKEEAVLNNIQFMESIHAKSYSSIFETL-----------NEKSEIEAIFDW 129

Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           A     LQY     +  + TGT    +       +  V  E   FY+GF   L     N+
Sbjct: 130 ADNNEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNR 182

Query: 217 MVGIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           M+ +AE  + I+RDES+H   + +   +  NQ+  +       E Q     +L++    E
Sbjct: 183 MLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQ----AELQAWMYDLLYDLYENE 238

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
             Y HE         +    EQ M F+   AN+    +G EP+F
Sbjct: 239 EKYTHELYD------DLGWYEQVMTFLRYNANKALMNLGQEPMF 276


>gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
          Length = 317

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 18/205 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110
           W P ++    D   WK+ N   + ER +I R    F + E  V  ++   ++A+ R    
Sbjct: 37  WDPRDIDFSKDKEDWKAMN---EAERRVILRLCSLFVAGEEAVTLDLLPLIMAVARE-GR 92

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    FEEA H+  F+  +  +  +  +L   +++        ++   + + L 
Sbjct: 93  LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDLSTFHKD--------HYRKIFYEYLP 144

Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228
             +      D   E   +  V Y +V EG+   TG+ A   +L + NK+ G+ +  + + 
Sbjct: 145 Q-AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQ 203

Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253
           RDES H+ +G  +++++  EN ++W
Sbjct: 204 RDESRHIGYGTYLLSRLISENEYIW 228


>gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia
           farcinica IFM 10152]
 gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Nocardia farcinica IFM 10152]
          Length = 320

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W   N LT  E+ +  R        +++      +++     
Sbjct: 28  TGNFWLPEKVPVSNDIPSW---NTLTPHEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L   +   E F    E  ++  KA   L Y Q
Sbjct: 85  TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENRNLQRKAEIVLDYYQ 144

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 145 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMHWSSRAKLTNTADMIRLI 189

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ +++ + E       E +  +  +L+E    E+ Y  +  
Sbjct: 190 IRDEAVHGYYIGYKYQRGLEQVSEAERE-------ELKNYTFELLYELYENEVEYTQDLY 242

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     + ++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 243 DE--VGLTE-DVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSALSPNADENHDFFS 299

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 300 GSGSSYVIG 308


>gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 106

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M
Sbjct: 10  IVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM 68

Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
            E I L+ + NFFE R   YQ+G
Sbjct: 69  -ENISLQGKTNFFERREANYQKG 90


>gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
 gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
          Length = 326

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 32/305 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT+ E+ M  R        +++      +++     
Sbjct: 34  VGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
            P         AF E+VH+ ++  I ++L     +DE   F    E P++  KA   L Y
Sbjct: 91  TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FRWSEENPNLQRKAEIVLDY 148

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 149 YR-------------GDDPLKRK--VASTMLESFLFYSGFYAPMYWASRAKLTNTADLIR 193

Query: 226 YIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+RDE++H  + I    Q  +E        E +  +  +L E    E+ Y  +   +  
Sbjct: 194 LIIRDEAVH-GYYIGYKFQKGLERVSEAERAELKDYTFNLLFELYDNEVEYTQDLYDE-- 250

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341
           +GL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    +
Sbjct: 251 LGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILAALSPNADENHDFFSGSGS 309

Query: 342 EYQQG 346
            Y  G
Sbjct: 310 SYVIG 314


>gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
          Length = 320

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           chlorophenolicus A6]
 gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W   N LT  E+ +  R        +++      +++     
Sbjct: 32  VNNFWLPEKVPLSNDVQSW---NTLTPVEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E  ++  KA   + Y Q
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +E       +E +  +  +L E    E+ Y H+      VG
Sbjct: 194 IRDEAVH-GYYIGYKFQRALETVSEERRQEIKDYTFELLFELYENEVQYTHDLYDG--VG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L A   ++++ + AN+    +G E +F
Sbjct: 251 L-AEDVKKFLHYNANKALMNLGYEAMF 276


>gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
 gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
          Length = 338

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 120/308 (38%), Gaps = 38/308 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   LT+ E+ M  R        +++      +++    S
Sbjct: 46  TTNFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDAS 102

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF E+VH+ ++  I ++L              P I     WA +     
Sbjct: 103 TPHEEAVLTNIAFMESVHAKSYSTIFSTLC-----------STPQIDEAFRWAEENPYLQ 151

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                  G    D    +   +  V+ E   FY+GF   +      K+   A+  + I+R
Sbjct: 152 RKAKIILGYYAGDNPLKRK--IASVMLESFMFYSGFYLPMRWSSRAKLTNTADVIRLIIR 209

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
           DE++H  +       G++ + Q + +       E +  +  +L E    E  Y  +   P
Sbjct: 210 DEAVHGYYIGYKYQRGLEHVTQAERD-------ELKDYTFELLFELYDNEADYTEDLYDP 262

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFET 338
            G+        ++++++ AN+    +G E +F   E    P +   +    ++N  FF  
Sbjct: 263 VGWT----EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSALSPNADENHDFFSG 318

Query: 339 RVTEYQQG 346
             + Y  G
Sbjct: 319 SGSSYVMG 326


>gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 320

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Streptococcus pneumoniae GA04375]
          Length = 320

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa]
          Length = 391

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 38/310 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   LS+P  
Sbjct: 48  WRPEEVNLMLDSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQGRAPSAVLMALLSDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155
             ++    F E +HS ++ +I+ +L  D  ++F+       + +   SI           
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKT 164

Query: 156 ----TAKANW--ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFA 206
                AK N+  ++   Q      +     +A  + ++ L++  +V+   E + FY  FA
Sbjct: 165 RHWENAKENYECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCLHVINALEAIRFYVSFA 224

Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KEFQQKS 261
              +  +  + M G A+  ++I RDE LHL     +I Q++   +   W    KE +Q++
Sbjct: 225 CTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVQIAKECEQEA 284

Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318
             +  E    E  +A      G   G+N  S   ++ ++   R  Q GL  P+    T++
Sbjct: 285 VDIFMEVNSQEKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKH 344

Query: 319 PFPWMSEVID 328
           P+PW+ E ++
Sbjct: 345 PYPWIREYLN 354


>gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus]
 gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1]
 gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1]
 gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1]
          Length = 355

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 36/301 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ +E+   DD A     + LT  E    +    F ++++ LV  N+  ++ ++    
Sbjct: 74  NRWLESELVFLDDAA---DVDKLTPSELDFYRFIFTFLSAADDLVNCNLGNLMGLFEE-- 128

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY-----REVPSITAKANWALQ 164
             + + Y + Q   EAVHS  +  I   L  ++      Y     RE  SI +K  W  +
Sbjct: 129 -KDIQHYYVEQESIEAVHSRVYSIIQLILFKNDATARAEYVKKAIRET-SIRSKVKWISE 186

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +              + E + + ++  ++ EG++F   FA I  +   N  V   +  
Sbjct: 187 RVE--------------ECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIFVVTCQAN 232

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             I RDE++H      + N+      HL  + K    +   +  EA  LE  +     P 
Sbjct: 233 TMISRDETIHTKASCVIYNK------HLQKYKKPSTCRIYKLFSEAVKLECEFLRARAPS 286

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
               ++  +   Y++F A+R    IGL PLF        +    +   ++ NFFE R T 
Sbjct: 287 DSAIIDTEAICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMATSQQTNFFERRNTT 346

Query: 343 Y 343
           Y
Sbjct: 347 Y 347


>gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 324

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 40/291 (13%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+++  K    W++      N W+P ++P+ +D+  W   N L   E+LM  R       
Sbjct: 17  NKIIDEKDQEVWDRL---TGNFWLPEKIPLSNDIQSW---NTLKPHEQLMTTRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149
            +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F   
Sbjct: 71  LDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFRWS 130

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E P +  KA   L Y             +  D E  +   V   + E   FY+GF   +
Sbjct: 131 EENPYLQKKAQIVLDYY------------RGDDPEKRK---VASTMLESFLFYSGFYAPM 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 K+   A+  + I+RDE++H  + I    Q  ++         ++++  M +  +
Sbjct: 176 YWSAHAKLTNTADLIRLIIRDEAVH-GYYIGYKYQQAVKRASA-----ERQAELMDYTYS 229

Query: 270 LLEIAYAHETMPKGF-------VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           LLE  Y +E   +G+       +GL     + ++++ AN+    +G E LF
Sbjct: 230 LLEDLYENE---EGYTESLYDEMGLT-EDVKMFLRYNANKALMNLGYEALF 276


>gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae R6]
 gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae D39]
 gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae G54]
 gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae JJA]
 gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae P1031]
 gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 70585]
 gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae
           AP200]
 gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 670-6B]
 gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I,
           function unknown [Streptococcus pneumoniae R6]
 gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae D39]
 gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pneumoniae G54]
 gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 70585]
 gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae JJA]
 gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae P1031]
 gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV104]
 gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae OXC141]
 gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV200]
 gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae
           AP200]
 gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 670-6B]
 gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41301]
 gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17545]
 gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41317]
 gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47368]
 gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47901]
          Length = 320

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK36]
 gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative
           [Streptococcus sanguinis SK36]
 gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK72]
 gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK115]
 gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK355]
          Length = 319

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK405]
 gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK678]
 gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK160]
 gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1]
 gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK408]
          Length = 319

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 326

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 41/275 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    ++D E  +  R        +++      +++     
Sbjct: 34  TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165
            P         AF E+VH+ ++  I ++L     +DE   F+   + P +  KA   L Y
Sbjct: 91  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 148

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 149 YE-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADVIR 193

Query: 226 YIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            I+RDE++H  +       G+++ +  K         E +  +  +L+E    E+ Y H 
Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLEMASDAK-------RAEMETYTYDLLNELYENEVEYTHS 246

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              +  VGL +   E+++ + AN+    +G   LF
Sbjct: 247 LYDE--VGL-SDDVEKFLHYNANKALMNLGYPALF 278


>gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
          Length = 319

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 46/289 (15%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGI 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G  +A Q+ +   ++     E   FY+GF   L     NK+  
Sbjct: 127 NEFLQEKARIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270
           +AE  + I+RDES+H          G + + + + EN   W  +  +Q       +  TL
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239

Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +  E M              ++++ AN+    +G +PLF  T N
Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275


>gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecium DO]
 gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
 gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
          Length = 321

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 30/281 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+  E+  +    G     +++ + + +
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSQLEKDTVGHVFGGLTLLDTVQSESGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             + + +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 76  DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFDWTNT 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ      +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 128 NPYLQKKAERINEIYKHGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    +  +     +L+E    E  Y  E
Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETLKDWMYNLLYELYENEERYTEE 239

Query: 279 TM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              P G+        + ++++ AN+    +G++PLF  T N
Sbjct: 240 LYDPIGW----TEEVKTFLRYNANKALMNLGMDPLFPDTAN 276


>gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 321

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 41/275 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    ++D E  +  R        +++      +++     
Sbjct: 29  TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 85

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165
            P         AF E+VH+ ++  I ++L     +DE   F+   + P +  KA   L Y
Sbjct: 86  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 143

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 144 YE-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADVIR 188

Query: 226 YIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            I+RDE++H  +       G+++ +  K         E +  +  +L+E    E+ Y H 
Sbjct: 189 LIIRDEAVHGYYIGYKYQKGLEMASDAK-------RAEMETYTYDLLNELYENEVEYTHS 241

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              +  VGL +   E+++ + AN+    +G   LF
Sbjct: 242 LYDE--VGL-SDDVEKFLHYNANKALMNLGYPALF 273


>gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17570]
          Length = 320

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18]
 gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18]
          Length = 392

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L + ++ +   NL + +  +S+       A+   +S+P  
Sbjct: 48  WRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A           N  
Sbjct: 105 DTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGHYYDDVLNKT 164

Query: 163 LQYTQTLSSPSFTTGTKDADQE--------------FLQDLFV-FYVV--FEGMWFYTGF 205
            Q+   ++       T +AD+                ++ L++  +V+   E + FY  F
Sbjct: 165 RQWQNQIAFVELAKETPEADERLERAIKQESIAKRALMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     ++ Q++   +   W K   E + +
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAE 284

Query: 261 SRTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL--EPLFKYTE 317
           +  +  E    E  +A H     G  GL+     +++ ++   R  Q GL  E + + T+
Sbjct: 285 AAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTK 344

Query: 318 NPFPWMSEVID 328
           +P PW+ E ++
Sbjct: 345 HPIPWIREYLN 355


>gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae TIGR4]
 gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae
           TIGR4]
 gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 320

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta
           [Melissococcus plutonius ATCC 35311]
 gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 323

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 48/290 (16%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L++ E+       G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGLTLLDTVQSESGI 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             + +    P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFNWIDT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G     +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NQQLQYKAKRVNEIYKHGKPLQKK-------VANVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNF----------GIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +AE  + I+RDES+H  +          G++   Q +++N   W  +       +L+E  
Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKN---WMYD-------LLYELY 229

Query: 270 LLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
             E  Y  E   P G+        + ++++ AN+    +G+ PLF  T N
Sbjct: 230 ENEEKYTEELYDPLGW----TEDVKIFLRYNANKALMNLGMNPLFPDTAN 275


>gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
 gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
          Length = 319

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDGVGW-TEEVKTFLRYNANKALMNMGQDPLF 270


>gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
 gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
          Length = 376

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 35/297 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D+  +   + LT+ E+ +  +NL + +  +S+      L     +S+   
Sbjct: 48  WRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQGRAPNLTFLPMVSDIAL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165
             ++   +F E +HS ++ +I+ +L ++  E+F+       I  +A    QY        
Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIMKRATAVTQYYDDLIREK 164

Query: 166 --TQTLSSPSFTTG------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
                L    F  G      TK  +  +L    V     E + FY  FA   S      M
Sbjct: 165 RTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVN--ALEAIRFYVSFACTFSFAERGLM 222

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-----ENPHL--WTKEFQQKSRTMLHEATL 270
            G A+  + I RDE LHL        QI+      ++P +    K  + K+  +  +A  
Sbjct: 223 EGNAKIMKLIARDEQLHLK---GTQYQIRTWQNGEDDPEMVDIAKRLESKAVQIFLDAAE 279

Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323
            E  +A + + +  +  L+  S   Y+ ++   R    GL   E L   +++P PW+
Sbjct: 280 QEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELNVPSKHPLPWI 336


>gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 325

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 112/269 (41%), Gaps = 32/269 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +         + +   L    + ++++    ++A       P
Sbjct: 34  NFWLPEKVPLSNDIPSWATLTAAEQQLTIRVFTGLTLLDTIQNMIGAPALMA---DAITP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                L   AF EAVH+ ++  + ++L     E+ + +R          W+ +  Q  + 
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSVFSTL-CRTAEVDDAFR----------WSAENPQLQAK 139

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                   DA    L+   +  V  E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 140 SRLILNEYDASGTPLKKK-IASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDE 198

Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           ++H          G++ +++ +        +E +  + +++ +   +E  Y  E++  G 
Sbjct: 199 AVHGYYIGYKFQRGLETVSEAE-------RQEIKDFAFSLMFDLYAIEAKYT-ESLCDG- 249

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           VGL     + ++ + AN+    +G E LF
Sbjct: 250 VGLT-EDVKHFLHYNANKALMNLGYEALF 277


>gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aggregans DSM 9485]
 gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485]
          Length = 297

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 17/236 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI--YRHLSNP 111
           W P+ +    D+  W   N L+D+ER ++ R    F + E  V  +++  I    H    
Sbjct: 32  WNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPLIKAIAHDGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170
           E   +L    FEEA H+  F   I+ +   + +L   +   PS  A    AL +  Q L 
Sbjct: 89  EEELFLTTFLFEEAKHTDFFARFISEVARVDPDLSRYH--TPSYRALIYDALPRAMQRLE 146

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMR 229
                    +A          + ++ EG+   TG+    + L   N M G+ E  + + +
Sbjct: 147 HDPSPFNLAEAS-------LTYNMIVEGVLAETGYHGYFTILDTHNLMPGVREGIRLLKQ 199

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGF 284
           DES H+ +GI +++++   +  +W    ++ +  ++H   ++ EI  +++TMP G 
Sbjct: 200 DESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDTMPFGL 255


>gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK49]
          Length = 332

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 34  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 87

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 88  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 139

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 140 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 192

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 193 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 248

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 249 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 283


>gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
 gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
          Length = 324

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 112/273 (41%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W   N LT +E+ +  R        +++      +++     
Sbjct: 32  VNNFWLPEKVPLSNDIQSW---NTLTPEEQTLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E   +  KA   + Y +
Sbjct: 89  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSTENEFLQKKARIVMDYYR 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMHWSSRAKLTNTADLIRLI 193

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ ++Q + +       + +  + ++L+E    E+ Y     
Sbjct: 194 IRDEAVHGYYIGYKFQRGLETVDQARRD-------DIKDYTFSLLYELYDNEVGYTQSLY 246

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               VGL +   ++++ + AN+    +G E +F
Sbjct: 247 DA--VGL-SEDVKKFLHYNANKALMNLGYEAMF 276


>gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
 gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
          Length = 322

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------IASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
 gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
          Length = 324

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 115/303 (37%), Gaps = 25/303 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +++W+ TE  + +D+  ++   G+ + ER ++ R L   A  E  V       +YR    
Sbjct: 26  HSYWLHTEYNLTEDVNDYRV--GVREAERQVLTRALLAIAQVEVAV-KTFWGDLYRKFPK 82

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           PE        A  E  H   + +++  LGL +   F    E P++  +    L       
Sbjct: 83  PEVGAVGYTFAESEVRHQDAYAHLLELLGLTDA--FARLHEAPALGER----LAVLDAHL 136

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG----IAEQYQY 226
            P    G  DA    L   FV +V          F Q L L   N+  G    +A   + 
Sbjct: 137 VPVRQDGRDDAFSVALFSAFVEHVSL--------FGQFLILKAFNQATGRFKGVANIVEA 188

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
             ++E +H  FG  ++  ++ E P  +   F  + R    +A   E A        G + 
Sbjct: 189 TSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLRAACVDAERAERAILRWICEAGALP 248

Query: 287 -LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
            L     E +MQ   N     +G  PL++       P  W  E +   K+ +FF  R T 
Sbjct: 249 FLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLAPTRWFEEELLSSKQVDFFHKRPTA 308

Query: 343 YQQ 345
           Y +
Sbjct: 309 YAK 311


>gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
 gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
          Length = 324

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 22/264 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   L  DER +  R L      +++       ++      P
Sbjct: 34  NFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGLTLLDTIQNTVGAPSLMPDAQTP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   +   + F    + P + AK+   LQ     
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFRWSEDNPHLQAKSRLILQEYNAT 150

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           + P                  +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 151 ADPLKRK--------------IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 196

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      +   + P       +  + +++ +   +E  Y  E      +GL  
Sbjct: 197 DEAIHGYYIGYKFQRATEQLPQADRDALKDFAFSLMFDLYEIEAHYTAELYDD--LGLTE 254

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313
              + ++ + AN+    +G E LF
Sbjct: 255 -DVKAFLHYNANKALQNLGYEALF 277


>gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
 gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
          Length = 334

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LTD E+ +  R        +++      +++    +
Sbjct: 42  TGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF E+VH+ ++  I ++L     E+ + +R          W+ +  Q  
Sbjct: 99  TPHEEAVLTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFR----------WSEENEQLQ 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 148 RKAQIVMDFYRGDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 205

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      ++ E+P    +E +  +  +L E    E  Y      +  VGL 
Sbjct: 206 DEAVHGYYIGYKYQRGLETESPQR-REELKDYTFDLLMELYANEEDYTESLYDE--VGL- 261

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           +   ++++++ AN+    +G E LF
Sbjct: 262 SEDVKKFLRYNANKALMNLGYEALF 286


>gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 392

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 133/311 (42%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L + ++ +   NL + +  +S+       A+   +S+P  
Sbjct: 48  WRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A           N  
Sbjct: 105 DTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGYYYDDVLNKT 164

Query: 163 LQYTQTLSSPSFTTGTKDADQE--------------FLQDLFV-FYVV--FEGMWFYTGF 205
            Q+   ++       T + DQ                ++ L++  +V+   E + FY  F
Sbjct: 165 RQWQNQIAFVELAKETPEVDQRLERAIKQEAIAKRALMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     ++ Q++   +   W K   E + +
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAE 284

Query: 261 SRTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL--EPLFKYTE 317
           +  +  E    E  +A H     G  GL+     +++ ++   R  Q GL  E + + T+
Sbjct: 285 AAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTK 344

Query: 318 NPFPWMSEVID 328
           +P PW+ E ++
Sbjct: 345 HPIPWIREYLN 355


>gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
 gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
          Length = 326

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ +++   +    L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
 gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
          Length = 320

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNVEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4]
 gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4]
 gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4]
 gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4]
          Length = 305

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 120/304 (39%), Gaps = 42/304 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P+++P+  D+A       L + +R   K    F   +E LV  NI   + +  +  
Sbjct: 26  NMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNFNIE-DLVKEFNCH 81

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165
           +   Y   Q   E +H   +  I+       G++  +          P++ AK +W    
Sbjct: 82  DATHYYAEQMAMENIHGKVYANILQLFF--NGDMMKLKEYAVKVVADPTLKAKLDW---- 135

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQY 224
              L +    T T+        +  + +++ EG++F + F  I SL R   M+ GI    
Sbjct: 136 ---LHTRVKNTKTR-------AEKVLIFLLIEGIFFISSFYSI-SLFRVRGMLNGICLAN 184

Query: 225 QYIMRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            YI +DE LH      + N +    E P   W K   Q++         +E+ Y+     
Sbjct: 185 DYISKDELLHTRAAAVLYNSLIPAKERPDAAWIKRLFQEA---------VEVEYSFIAAK 235

Query: 282 KGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
              V L  P   ++++Q   +R    IG+EP++  +  P           K  NFFE   
Sbjct: 236 SKNVTLVVPGEIKKFLQATCDRILQSIGVEPIYG-SHAPVTCPLSYNGCIKSVNFFEREG 294

Query: 341 TEYQ 344
           T+Y 
Sbjct: 295 TDYS 298


>gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus GG]
 gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus GG]
 gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG]
          Length = 326

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ +++   +    L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus Lc 705]
 gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 326

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ +++   +    L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna]
 gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna]
          Length = 322

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 26/288 (9%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+++  K    W +     NN W+P ++P+ +D+  W     LT++ERL+  R       
Sbjct: 15  NRVIDEKDAEVWNRL---TNNFWLPEKIPVSNDVQSWHQ---LTEEERLITMRVFTGLTM 68

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            +++      +++      P         AF E+VH+ ++  I ++L             
Sbjct: 69  LDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLC-----------S 117

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
              I A   W+ +               + D    +   V   + EG  FY+GF   +  
Sbjct: 118 TKEIDAAFRWSEENANLQKKAEIVLSYYNGDDPLKRK--VASTLLEGFLFYSGFYLPMFW 175

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
               K+   A+  + I+RDE++H  + I    Q  +E     TK  QQ+ +   +E  L 
Sbjct: 176 SSRGKLTNTADMIRLIIRDEAVH-GYYIGYKFQKGLEKE---TKARQQELKDYTYEL-LF 230

Query: 272 EIAYAHETMPKGFVGLNAPS--CEQYMQFIANRRCHQIGLEPLFKYTE 317
           E+    +   +        +   ++++++  N+    +G + LF  ++
Sbjct: 231 ELFDNEQEYTQDLYDATGQTEDVKKFLRYNGNKALQNLGYDALFSRSD 278


>gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
 gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
          Length = 324

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 24/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT +E+ +  R        +++       A+      P
Sbjct: 34  NFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGLTLLDTIQNAVGAPAMMPDAQTP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L    +  E F    E P + AKA   L      
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAILG----- 145

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              ++  G     ++      V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 146 ---TYAPGADPLKRK------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 196

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      ++ E      +E +  +  +L E   +E  Y  E      +GL 
Sbjct: 197 DEAVHGYYIGYKFQRAMERETAER-RQELKDYAFGLLFELYEIEGHYTEELYDD--LGLT 253

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               + ++ + AN+    +G E LF
Sbjct: 254 E-EVKSFLHYNANKALQNLGFEALF 277


>gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 157

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
           + A  +E  +  + +P G +G+NA    +Y++F+A+R    +G   ++  + NPF WM+ 
Sbjct: 36  NSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT- 93

Query: 326 VIDLKKEKNFFETRV 340
           +I L+ + NFFE RV
Sbjct: 94  MISLQGKTNFFEKRV 108


>gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK330]
          Length = 319

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 119/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I A    
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QNKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
 gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32]
 gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
          Length = 392

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 39/311 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A +   N L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 48  WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169
             ++    F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +    
Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164

Query: 170 ----SSPSFTTGTK---DAD--------QE------FLQDLFV-FYVV--FEGMWFYTGF 205
               ++  F    K   DAD        QE       ++ L++  +V+   E + FY  F
Sbjct: 165 REWENAKEFVELAKESPDADFRLNRAIKQEAEAKCALMKSLYLCLHVINALEAIRFYVSF 224

Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260
           A   +  +  + M G A+  ++I RDE LHL     +I Q++   +   W K   E +Q+
Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQE 284

Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317
           +  +  E    E  +A      G V GLN  S   ++ ++   R  Q GL  P+     +
Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344

Query: 318 NPFPWMSEVID 328
           +P+PW+ E ++
Sbjct: 345 HPYPWIREYLN 355


>gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
 gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
          Length = 319

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 33/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P   + +    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPH-EEAVYNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 125

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  GT    +       V  V  E   FY+GF   L     NK+  
Sbjct: 126 NPYLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 178

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 179 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKDWMYDLLYTLYENEEGY 234

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 235 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 269


>gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           schoenbuchensis R1]
          Length = 324

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 33/269 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAITE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                L   AF EAVH+ ++  I ++L     E+ + +R      ++ N  LQ   TL  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTL-CSTAEVDDAFR-----WSEENANLQKKATLVL 144

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +        +       +   + E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 145 ERYEASDPLKKK-------IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDE 197

Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           ++H          G   +++ K        +E +  +  ML +   +E  Y  +      
Sbjct: 198 AVHGYYVGYKFQLGFAKLDEAK-------KQEIKDFAFNMLFDLYSIECKYTEDLYDA-- 248

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +GL     + ++ + AN+    +G EPLF
Sbjct: 249 IGLT-EDVKVFIHYNANKALMNLGFEPLF 276


>gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1467]
          Length = 212

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +  P     L    F E+VH+ ++  I ++L        N  +E+  I      
Sbjct: 75  DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
 gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
          Length = 317

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 47/289 (16%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + +
Sbjct: 20  TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGM 73

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+ + +  P     L    F E+VH+ ++  I  +L        N   E+  I      
Sbjct: 74  AALRKDVRTPHETAVLNNIQFMESVHAKSYSSIFETL--------NTPTEIDEI------ 119

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLF----------VFYVVFEGMWFYTGFAQILSL 211
              +  + S       TK     F+ DL+          +  V  E   FY+GF   L  
Sbjct: 120 ---FEWSDSEEFLQNKTK-----FIYDLYHDDGHPLKKKISSVFLETFLFYSGFFTPLYY 171

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEA 268
              NK+  +AE  + I+RDES+H   G  +  + ++    L   E Q+    M   L++ 
Sbjct: 172 LGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDL 228

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              E  Y H+   +  VG        + ++ AN+    +G +PLF  TE
Sbjct: 229 YANEEKYVHKVYDQ--VGW-TEEVLTFTRYNANKALMNLGQDPLFPDTE 274


>gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
 gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
          Length = 326

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 30/304 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +D+  W +   LTD E+ +  R        +++      +++     
Sbjct: 34  VNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P         AF E+VH+ ++  I ++L     E+ + +R   E  ++  KA   ++Y 
Sbjct: 91  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFRWSEENSNLQRKAEIVMEYY 149

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D+   +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 150 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 194

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I+RDE++H  + G      ++   P    +E +  +  +L E    E+ Y  +   +  V
Sbjct: 195 IIRDEAVHGYYIGYKFQRGLEALAPEQ-REEIKSYTYELLFELYENEVQYTEDLYDE--V 251

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
           GL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    + 
Sbjct: 252 GLTE-DVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAALSPNADENHDFFSGSGSS 310

Query: 343 YQQG 346
           Y  G
Sbjct: 311 YVIG 314


>gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
 gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
          Length = 325

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 118/304 (38%), Gaps = 29/304 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W S   LT +E+ +  R        +++       A+     
Sbjct: 32  TSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGLTLLDTIQNTVGAPALMADAV 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF EAVH+ ++  + ++L    +  + F    E   + AK+   L+   
Sbjct: 89  TPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFRWSEENEFLQAKSRLILEEYN 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             SSP      K A            V  E   FY+GF   +      K+   A+  + I
Sbjct: 149 ATSSP---LKKKIAS-----------VFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLI 194

Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFV 285
           +RDE++H  + I    Q  +E        E +  + T+L +   LE  Y  +   P G  
Sbjct: 195 IRDEAVH-GYYIGYKFQRGLERLSEAERTEIKDFAFTLLFDLYDLETKYTEDLYDPLGLT 253

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTE 342
                  + ++ +  N+    +G E LF  T    NP    S   +  +  +FF    + 
Sbjct: 254 ----EDVKHFLHYNGNKALQNLGFEGLFPETICQVNPAIMASLSPNADENHDFFSGSGSS 309

Query: 343 YQQG 346
           Y  G
Sbjct: 310 YVIG 313


>gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           jostii RHA1]
 gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1]
          Length = 321

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 125/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 29  VGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L    D  + F    E P++  KA   + Y Q
Sbjct: 86  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D+   +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 146 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 190

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ + + + ++   +T E       +L E    E+ Y  +  
Sbjct: 191 IRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFE-------LLFELYDNEVDYTQDLY 243

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 244 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 300

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 301 GSGSSYVIG 309


>gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
 gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
          Length = 321

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 124/311 (39%), Gaps = 31/311 (9%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            W++ +S   N W+P +VP+ +D+  W +   LT  E+ +  R        +++      
Sbjct: 24  VWDRLVS---NFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGLTLLDTIQGTVGA 77

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159
           +++      P         AF E+VH+ ++  I ++L    D  + F    E P++  KA
Sbjct: 78  VSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFRWSEENPNLQRKA 137

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L Y    S       +                + E   FY+GF   +      K+  
Sbjct: 138 QIVLDYYNGESPLKRKVAS---------------TLLESFLFYSGFYLPMYWSSRAKLTN 182

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            A+  + I+RDE++H  + I    Q  +E       +E +  +  +L E    E+ Y  +
Sbjct: 183 TADLIRLIIRDEAVH-GYYIGYKYQKGLEQLTEAEREELKNYTFELLFELYENEVDYTQD 241

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335
                 VGL     ++++++ AN+  + +G E LF   E   NP    +   +  +  +F
Sbjct: 242 LYDG--VGL-TEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSALSPNADENHDF 298

Query: 336 FETRVTEYQQG 346
           F    + Y  G
Sbjct: 299 FSGSGSSYVIG 309


>gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1057]
          Length = 319

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            A+ + +             F E+VH+ ++  I ++L       E+F+     P +  KA
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 329

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 24/266 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK    LT  ER    + L      ++   N  + AI  H+   + 
Sbjct: 35  WLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAIMAHVDGHQR 91

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQYTQ 167
           +  L      E AVH+ ++  I  +L   E           +ITA   W      LQ   
Sbjct: 92  KAVLNFMAMMENAVHAKSYSNIFLTLAPSE-----------TITAVFEWVKENRYLQRKA 140

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            L +  +    K  D   L    V  V  E   FY+GF   L      +M+   E    I
Sbjct: 141 KLITDLYRD-IKAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSGEIINLI 199

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           +RDE++H  +   +  +I          +  + S  +L E    E+AY  +    G VGL
Sbjct: 200 IRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVY--GAVGL 257

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
            A   + ++++ AN+    +G +  F
Sbjct: 258 -AHDVKAFVRYNANKALMNLGFDAHF 282


>gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 319

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108
            +N W+P +VP+ +D+  W S N   ++++L I+   G   +    + N +   A+    
Sbjct: 27  TSNFWLPEKVPLSNDIPAWNSLNA--EEQQLTIRVFTGL--TLLDTIQNTLGAPALMADA 82

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYT 166
             P     +   +F EAVH+ ++  I ++L    D    +    E   + AKA   LQ+ 
Sbjct: 83  LTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEENAPLQAKAQIILQHY 142

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                        DA ++ +  +F+     E   FY+GF   +      K+   A+  + 
Sbjct: 143 Y----------HDDALKKKIASVFL-----ESFLFYSGFYLPMYWSSRGKLTNTADLIRL 187

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I++DE++H  + I    Q  +E      K E QQ +  +L E    E+AY  E +  G V
Sbjct: 188 IIKDEAVH-GYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYENEVAYT-EALYAG-V 244

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN--FFETRVTE 342
           G      ++++ + AN+    +G + LF  Y  +  P +   +    ++N  FF    + 
Sbjct: 245 GWQ-EDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSPNADENHDFFSGSGSS 303

Query: 343 YQQG 346
           Y  G
Sbjct: 304 YVMG 307


>gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 330

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK    L D E+    + L      ++   N  +  I  H+   + 
Sbjct: 33  WLPEEISLNGDLLTWKH---LGDKEKDTYMKVLAGLTLLDTEQGNTGMPTIAEHVEGHQR 89

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   ELF           K N  LQ    + 
Sbjct: 90  KAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEW--------VKTNRYLQRKAAII 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
              +    +  D   L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 142 GGLYN-AIEAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCGEIINLIIRD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +         +  + +++ E    EIAY  E   +  VGL   
Sbjct: 201 EAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYDQ--VGL-TH 257

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++++++  N+    +G  P F+  E NP   ++ +    K  +FF  +   Y++  
Sbjct: 258 DVKKFIRYNGNKALSNLGFNPYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 314


>gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str.
           Zhang]
 gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str.
           Zhang]
          Length = 326

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L  DE+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ +++   +    L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei ATCC 334]
 gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei BL23]
 gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus casei ATCC 334]
 gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           casei BL23]
 gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W]
 gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II]
          Length = 326

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L  DE+ ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            ++ +++   +    L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G+  A Q+ +  +F+     E   FY+GF   L     NK+  
Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLIIRDESVH 194


>gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           opacus B4]
 gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus
           B4]
          Length = 321

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 125/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 29  VGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L    D  + F    E P++  KA   + Y Q
Sbjct: 86  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D+   +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 146 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 190

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ + + + ++   +T E       +L E    E+ Y  +  
Sbjct: 191 IRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFE-------LLFELYDNEVDYTQDLY 243

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 244 DE--VGL-TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 300

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 301 GSGSSYVIG 309


>gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK150]
          Length = 319

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            A+ + +             F E+VH+ ++  I ++L       E+F+     P +  KA
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
 gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
          Length = 320

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +  P          F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQGKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 323

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 26/266 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  WK    LT++E+ +  R        +++       A+      P
Sbjct: 32  NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  + ++L       E F   +E P +  KA   L      
Sbjct: 89  HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAQENPLLQKKAQIVLDDYLAE 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
             P                  V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 GDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPKGFVGL 287
           DE++H  + I    Q+  ++    ++E Q + +   +    +L EI   +       VGL
Sbjct: 195 DEAIH-GYYIGYKFQLAYQS---LSEEEQARVKDEAYSLMFSLYEIETQYTESLYDPVGL 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                + ++ + AN+    +G E LF
Sbjct: 251 TE-DVKHFLHYNANKALMNLGFEALF 275


>gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 322

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             + + +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 76  DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKAEIDEIFEWTNT 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ      +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 128 NPYLQKKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    +  +     +L+E    E  Y  E
Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQQRLKDWMYDLLYELYENEERYTEE 239

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                 +G      + ++++ AN+    +G +PLF  T N
Sbjct: 240 LYDA--IGW-TEEVKTFLRYNANKALMNLGQDPLFPDTAN 276


>gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 326

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 26/300 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D++ W   N LT+ E+ +  R        +++        +      P
Sbjct: 36  NFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFTGLTLLDTIQGTIGAPTLIEDAVTP 92

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F E+VH+ ++  I ++L    D  + +    E P +  KA   L   +  
Sbjct: 93  HEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYRWSEENPHLQNKAELILNRYRM- 151

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D   ++   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 152 ------------DDPLMRK--VASVFLESFLFYSGFYLPMYWASRGKLTNTADLIRLIIR 197

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q          +E +  +  +L E    E+ Y         VGL  
Sbjct: 198 DEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLELYDNEVHYTESLYDD--VGLTE 255

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEKN--FFETRVTEYQQG 346
              + ++ + AN+    +G EPLF   TE   P +   +    E+N  FF    + Y  G
Sbjct: 256 -EVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAALSPGAEENHDFFSGSGSSYVIG 314


>gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
 gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
          Length = 325

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  WK+   LT +E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
                      AF E+VH+ ++  I ++L   +   + F    E   +  KA   L Y  
Sbjct: 90  TAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFRWASENEHLQKKAKIILAY-- 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                   TG     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 148 -------YTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 194

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      +  E+P     E ++ +  +L+E    E+AY H ++  G VG
Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESPER-QAELKEYTFNLLYELYENEVAYTH-SLYDG-VG 251

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +   ++++ + AN+    +G E +F
Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEAMF 277


>gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
 gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
          Length = 322

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 23/266 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W   N L  +E+ M  +        ++L      +++     
Sbjct: 30  TGNFWLPEKIPLSNDIPSW---NTLRPEEQDMTNKVFTNLTLLDTLQGTVGAISLISDAR 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF E+VH+ ++  I ++L L   E+  ++R          W+ +  Q  
Sbjct: 87  TPHEEAVLTNIAFMESVHARSYSSIFSTL-LSTQEINEVFR----------WSEENEQVQ 135

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      AD    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 136 RKAEIVNSYYVADDPLKKK--VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 193

Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q+ + E+     +E +  +  +L+E    E  +  +   P G    
Sbjct: 194 DEAVH-GYYIGYKYQLGVRESSEARQQELKDYTFDLLYELYDNEEQFTEDLYDPLGLT-- 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++++++ AN+    +G E LF
Sbjct: 251 --EDVKKFLRYNANKALMNLGYEALF 274


>gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens
           YS-314]
 gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 339

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 19/187 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W   N +++ E L   R        +++      +++    +
Sbjct: 46  TTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVSMIPDAT 102

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167
                  L   +F E+VH+ ++  I  +L    +  E F   R    +  KA   L Y Q
Sbjct: 103 THHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKRILDYYQ 162

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             S+P+                 +  V+ E + FY+GF   L +    K+   A+  + I
Sbjct: 163 QDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTADVIRLI 208

Query: 228 MRDESLH 234
           +RDE++H
Sbjct: 209 IRDEAIH 215


>gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus
           asymbiotica]
          Length = 319

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 23/264 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W   N LT +E+ +  R        +++       A+      P
Sbjct: 29  NFWLPEKVPLSNDIPSW---NTLTAEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDALTP 85

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                +   +F EAVH+ ++  I ++L L  D  + +       ++  KA   L Y    
Sbjct: 86  HEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDDAYYWSENNLALQNKAKIILNYY--- 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D   L+   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 -----------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q   + P+   KE +  + ++L +    EI Y  +      VG   
Sbjct: 191 DEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSLLFDLYENEIKYTEDLY--DIVGW-T 247

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313
              ++++ + AN+    +G E LF
Sbjct: 248 EDVKKFLHYNANKALMNLGYEALF 271


>gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1087]
          Length = 319

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            A+ + +             F E+VH+ ++  I ++L       E+F+     P +  KA
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    + +  +  GT  A ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L   E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                  VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 320

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK +      W  T +P+ +DL  W     L  +E+ M+ +  G     ++L + + V
Sbjct: 21  TWEKLVEQF---WTDTRIPLSNDLDDWAR---LPKNEKDMVGKVFGGLTLLDTLQSQDGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKA 159
            ++ + +             F E++H+ ++  I ++L   L+  E+F             
Sbjct: 75  QSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQW--------TNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  LQ   +  +  +  GT D  ++      V  V+ E   FY+GF   L     NK+  
Sbjct: 127 DELLQLKASTINDIYHNGT-DLQRK------VASVMLESFLFYSGFFAPLHYLGNNKLPN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    QI     P    +E +  +  +L +    E+ YA  
Sbjct: 180 VAEIIKLILRDESVHGTY-IGYKFQIAFNQLPDDEKEEIKNWTYELLFKLYQNEVKYAEY 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              +  +G      + ++++ AN+    +G +PLF  T N
Sbjct: 239 LYDE--IGW-TERVKVFLRYNANKALQNLGFDPLFPDTAN 275


>gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
 gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
          Length = 348

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 38/289 (13%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIV 101
           +EKY S     W P E+P+ +D  +WKS   L++ ER   I  + G  A     +   + 
Sbjct: 25  YEKYTSQL---WFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALD--TLQGEVG 76

Query: 102 LAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQ-----YIITSLGLDEGELFNMYREVPSI 155
           +   RHL +   R+  ++ Q   E +H+ ++      ++ TS   +E E+F   R  P +
Sbjct: 77  MPALRHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTS---EEREVFEWVRTQPQL 133

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K        +   +P       D     L    V   + E   FY+GF   L L    
Sbjct: 134 QNKI---AMIREIYDNP-------DVSNLGLWKKMVVSCMLETALFYSGFFYPLYLAGQG 183

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI-- 273
           +MV   E +  I+ DE++H  + + ++ Q K         E +Q      +E TL+++  
Sbjct: 184 RMVSAGEIFNLIIMDEAVHGVY-VALLAQEKFAE----MNEAEQAYALAWYEETLMKLYR 238

Query: 274 -AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
              A+  M    VGL     ++++++  N     +G+E  F+  E NP 
Sbjct: 239 NELAYTEMLYADVGL-VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI 286


>gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
 gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
          Length = 321

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 121/277 (43%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     ++L + + V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTLQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+ + +             F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G+    +       +  V  E   FY+GF   L     NK+  
Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------IASVFLETFLFYSGFFTPLYYLGNNKLAN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277
           +AE  + I+RDES+H   G  +  + ++    L  +E Q+K +  +++   TL E    +
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235

Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E++  G VG      + ++++ AN+    +G +PLF
Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270


>gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 323

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 30/268 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +DL+ W     LT+ E+ +  R        +++  +    A+       
Sbjct: 32  NFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGLTLLDTIQNSVGAPALMVDAVTQ 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  + ++L   +   E F    E P +  KA   L   Q  
Sbjct: 89  HEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFRWSEENPHLQRKAQLILHEYQAG 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
             P      K A            V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 ECP---LKKKIAS-----------VFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF----V 285
           DE++H   G  +  + ++    L   +  Q+++   +  +LL   Y  E     F    V
Sbjct: 195 DEAVH---GYYIGYKFQLAYRQL---DEAQQAQIKDYAFSLLFDLYEAEASYTEFLYDPV 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     + ++ + AN+    +G EPLF
Sbjct: 249 GLTE-EVKHFLHYNANKALMNLGFEPLF 275


>gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 328

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 23/194 (11%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W++  S   N W+P +VP+ +D+  WK  +       + +   L    + +  V     L
Sbjct: 32  WDRLTS---NFWLPEKVPVSNDIPTWKIMDEAEQWATMQVFTGLTMLDTMQGTVG---AL 85

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160
           +I    + P         AF E+VH+ ++  I  +L         FN  R+   +  KA+
Sbjct: 86  SILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFNWGRQSERLQYKAH 145

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
             L + +  +SP     +                + E   FY+GF   L +   +K+   
Sbjct: 146 RVLDFYKRGNSPMRKAAS---------------TLLESFLFYSGFYLPLRMAAHSKLTNT 190

Query: 221 AEQYQYIMRDESLH 234
           A+  + I+RDE++H
Sbjct: 191 ADIIRLIIRDEAVH 204


>gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 319

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A      
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  I ++L    D    ++   E  S+  KAN  L Y Q
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSEESESLQRKANLVLDYYQ 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                        AD+   +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 144 -------------ADEPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ ++ ++ E       E +  +  +L +    E++Y  E  
Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKVSDVRRE-------ELKGFALDLLMDLYDNELSYTEEL- 240

Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
              + G       + ++ + AN+    +G E LF
Sbjct: 241 ---YAGTGWEEEVKAFLCYNANKALMNLGYEALF 271


>gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
 gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
          Length = 317

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 34/281 (12%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  WK    + ++E  ++++  G     ++L + + +
Sbjct: 21  VWEK---LTEQFWLDTRIPLSNDLNDWKK---MKEEEHALVEKVFGGLTLLDTLQSVDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+ +          L    F E+VH+ ++  I ++L        N   E+  I    + 
Sbjct: 75  SALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTL--------NTPAEIEEIFEWTEK 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +       +  D    +   VF    E   FY+GF   L     N++  
Sbjct: 127 NEYLQY----KAEKICAIYRGDDALMKKAASVF---LESFLFYSGFYAPLYFLGHNRLNN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAY 275
           +AE  + I+RDES+H   G  +  + +I    L  +E Q+K +     +L++    E  Y
Sbjct: 180 VAEIIKLILRDESVH---GTYIGYKFQIRYRAL-AEEEQEKLKFEIVNLLYDLYQNEEKY 235

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            HE   +  +G        ++++ AN+    +G EPLF+ T
Sbjct: 236 THELYDE--LGW-TEDVGIFLRYNANKALMNLGFEPLFEET 273


>gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           quintana str. Toulouse]
 gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str.
           Toulouse]
          Length = 324

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTVRVFTGLTLLDTIQNTVGAISLMADAITE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L+  +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA- 149

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S P      K A             + E   FY+GF   +      K+   A+  + I+R
Sbjct: 150 SDP---LKKKIAS-----------TLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G   +N+ K        +E +  S  +L +   +E  Y  +    
Sbjct: 196 DEAVHGYYIGYKFQLGFAKLNESK-------KQEIKDFSFNLLFDLYNIECKYTEDLYDA 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +GL     + ++ + AN+    +G EPLF
Sbjct: 249 --LGL-TEDVKVFLHYNANKALMNLGFEPLF 276


>gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide
           reductase 2) (R2f protein) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 319

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 23/264 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +D+  W   N LT +E+ +  R        +++       A+      P
Sbjct: 29  NFWLPEKIPLSNDITSW---NTLTTEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDALTP 85

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                +   +F EAVH+ ++  I ++L L  D  + +    +  S+  KA   L Y    
Sbjct: 86  HEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEKSFSLQNKAKIILNYY--- 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S+    K           +  V  E   FY+GF   +       +   A+  + I+R
Sbjct: 143 ---SYHHPLKKK---------IASVFLESFLFYSGFYLPMYWSSRGILTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q   ++  L  KE ++ + ++L E    EI Y  E      VG   
Sbjct: 191 DEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSLLLELYENEIKYTEELY--DIVGW-T 247

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313
              ++++ + AN+    +G E LF
Sbjct: 248 EDIKKFLHYNANKALMNLGYETLF 271


>gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 319

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 23/315 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +   + W+ +EV    D+  +KS+  LT  E+  +KR L   A  E  
Sbjct: 12  PFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKSE--LTPVEKEAVKRALLGIAQVEVS 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +Y     PE        A  E  HS  +  ++  LG +    F    EVP  
Sbjct: 70  V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPVF 126

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             ++N   +Y             ++A    ++ +  F ++ E    ++ FA ILS  R  
Sbjct: 127 KERSNVLKEY--------LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFK 174

Query: 216 KMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             +  +A    +   DE LH N GI ++ +I  ENP +  K  ++ + T +     LE  
Sbjct: 175 GFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYITLEDK 233

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLK 330
                  +G +   +      YM++  +    Q+GL   F  +     P  W  E +   
Sbjct: 234 MLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEEEVFSN 293

Query: 331 KEKNFFETRVTEYQQ 345
           +  +FF  R T Y +
Sbjct: 294 ELDDFFAKRPTAYTK 308


>gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
 gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
          Length = 365

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 17/256 (6%)

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           ++S V+ NI+  +   +SN E    + +Q   E +H+ T+  I+     D  E+     +
Sbjct: 86  ADSRVSRNIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMD 145

Query: 152 VPSITAKANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFA 206
             ++  +++        L         G +  D+   Q L  F V     EG+ F   FA
Sbjct: 146 NQAVLDRSSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFA 205

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRT 263
              +L +    +G+A+  Q IM DE LH       ++ I +++P +W + +Q      + 
Sbjct: 206 CTFALAQRGLFMGVAQLVQKIMLDEILHSKMDFAALD-ILLKDP-VWFQSYQNCKGDVQR 263

Query: 264 MLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TEN 318
           +L E    E  +A     +G   VGLN    ++++ + A      + L+  + Y    +N
Sbjct: 264 ILDEVMENESNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLD--YNYPVVVKN 321

Query: 319 PFPWMSEVIDLKKEKN 334
           P P+M + +++  ++N
Sbjct: 322 PLPYMDKWMNIDSQQN 337


>gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
          Length = 320

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 26/266 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  WK    LT++E+ +  R        +++       A+      P
Sbjct: 29  NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 85

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  + ++L       E F    E P +  KA   L      
Sbjct: 86  HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAEENPLLQKKAQIILDDYLAE 145

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
             P                  V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 146 GDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 191

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPKGFVGL 287
           DE++H  + I    Q+  ++    ++E Q + +   +    +L EI   +       VGL
Sbjct: 192 DEAIH-GYYIGYKFQLAYQS---LSEEEQARVKDEAYSLMFSLYEIETQYTESLYDPVGL 247

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                + ++ + AN+    +G E LF
Sbjct: 248 TE-DVKHFLHYNANKALMNLGFEALF 272


>gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
 gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
          Length = 337

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +D+  W   N LT  E+ +  R        +++        +      P
Sbjct: 47  NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 103

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                L    F EAVH+ ++  I ++L L  D  + +    E   +  K++  L+Y Q  
Sbjct: 104 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQ-- 161

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D + L+   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 162 ------------DSDPLKKK-IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 208

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G    NQ+ +    L  ++ +  + ++L +    E+ Y  +      VG  
Sbjct: 209 DEAVHGYYIGYKFQNQL-LNKSSLEKQDIKDFAFSLLLDLYDNEVKYTEDLYDS--VGW- 264

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               ++++ + AN+    +G E LF
Sbjct: 265 TEDVKKFLHYNANKALMNLGYEALF 289


>gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           bacilliformis KC583]
 gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella
           bacilliformis KC583]
          Length = 324

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W+S   LT++E+ +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGLTLLDTVQNTVGAVSLMADAVTE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L L  D  + F    E   +  KA   L++ +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFRWSEENVYLQKKAKLVLEHYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +   F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 --------ANDPLKKKIASTFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G   +N+ +        +E +  +  ML +   +E  Y  +    
Sbjct: 196 DEAIHGYYIGYKFQLGFAKLNEAQ-------KQEMKDFTFNMLFDLYNIECKYTEDLYDS 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +GL     + ++ + AN+    +G E LF
Sbjct: 249 --LGL-TEDVKVFLHYNANKALMNLGFESLF 276


>gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
 gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
          Length = 112

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314
           Q +   M   A   E  + +  +    +G+   S EQY +++AN R   IGLE L+   K
Sbjct: 8   QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 67

Query: 315 YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           Y ++P+  +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 68  YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110


>gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae TN]
 gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae Br4923]
 gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae]
 gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae
           Br4923]
          Length = 325

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  W +   LT  E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L    +  E F    E  ++  KA   ++Y +
Sbjct: 90  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFRWSEENNNLQRKAKIVMEYYR 149

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D+   +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 150 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLI 194

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G+ +++  +         E ++ +  +L E    E+ Y  +  
Sbjct: 195 IRDEAVHGYYIGYKFQRGLVLVDDAR-------RAELKEYTYELLFELYDNEVEYTQDLY 247

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337
            +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF 
Sbjct: 248 DR--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFS 304

Query: 338 TRVTEYQQG 346
              + Y  G
Sbjct: 305 GSGSSYVIG 313


>gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9]
 gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9]
          Length = 203

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK  S     W  T VP+ +DL  W++ + +  D   +  +  G     ++L + + +
Sbjct: 29  TWEKLNSQF---WTATRVPVSNDLDDWRTLDPVAKD---LYGKVFGGLTLLDTLQSQDGM 82

Query: 102 LAIYRH-LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           L++  +   +P  R  L    F EA+H+ ++  I ++L +   E+ N++          N
Sbjct: 83  LSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIFSTL-MTPQEIANVFD-----FTHTN 136

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
             LQ    L +  +  GT    Q+ +  +F+     E   FY+GF   L      KM  +
Sbjct: 137 EHLQKKAHLINEVYQNGT--VPQKMIASVFL-----ESGLFYSGFYTPLYYLGNGKMANV 189

Query: 221 AEQYQYIMRDESLH 234
           AE  + I+RDES++
Sbjct: 190 AEVIRLILRDESVN 203


>gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 318

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 31/280 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            ++ + +  P     L    F E+VH+ ++  I ++L   E   E+F+       +  KA
Sbjct: 75  ASLRKDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKA 134

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    L          D  ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 135 ---------LKIRDIYENNPDPLKKKIASVFL-----ETFLFYSGFYTPLWYLGHNKIPN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + +I    L  K  Q+  +  L++  LL   YA+E 
Sbjct: 181 VAEIIKLILRDESVH---GTYIGYKFQIGFNQL-PKTKQEDLKNWLYD--LLYKLYANEE 234

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316
                +       +  + FI   AN+    +G +PLF  T
Sbjct: 235 KYTHLLYDQTGWTDDVLVFIRYNANKALMNLGQDPLFPDT 274


>gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp.
           RS-1]
 gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1]
          Length = 297

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 28/263 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P+++    D+  W++   LT DER ++ R    F + E  V  +++  +    +    
Sbjct: 32  WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88

Query: 114 RQYLLRQAF--EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
            + L   +F  EEA H+  F   +T +    G+L + +         +N+     + L  
Sbjct: 89  EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYH--------TSNYRALIHEAL-- 138

Query: 172 PSFTTGTKDADQEFLQDL--FVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228
           P+     +D      Q +    + ++ EG+   TG+ A    L R + M G  +    + 
Sbjct: 139 PAAMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLK 198

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGL 287
           +DES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A +E +P G    
Sbjct: 199 QDESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACYEVVPFGL--- 255

Query: 288 NAPSCEQYMQFIAN---RRCHQI 307
              S + +M F      RR  +I
Sbjct: 256 ---SHDDFMHFAMGQFQRRLDRI 275


>gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae
           bacterium 198]
          Length = 325

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 109/271 (40%), Gaps = 36/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++        + +    P
Sbjct: 34  NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  + ++L    +  E F    E   + AK+   L    + 
Sbjct: 91  HEESVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYNST 150

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +SP                  V  V  E   FY+GF   +      ++   A+  + I+R
Sbjct: 151 ASPLRKK--------------VASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIR 196

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G++ +++ +        KE +  +  +L +   +E  Y  E +  
Sbjct: 197 DEAIHGYYIGYKFQRGLERVSEAE-------RKEIKDFAFALLFDLYDIEARYT-EQLYD 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G +GL     + ++ + AN+    +G E LF
Sbjct: 249 G-LGLT-EDVKNFLHYNANKALQNLGFEALF 277


>gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
 gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
          Length = 333

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 122/305 (40%), Gaps = 32/305 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106
             N W+P ++P+ +D+  W   N L D E+L   R   NL    + +  V    ++   +
Sbjct: 41  TGNFWLPEKIPVSNDIPSW---NTLNDAEQLSTMRVFANLTLLDTIQGTVGAVSLIPDAK 97

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
            L        +   AF E+VH+ ++  I  +L              P I     W  +  
Sbjct: 98  TLHEEAVYTNI---AFMESVHAKSYSNIYMTLA-----------STPQINDAFRWTEENA 143

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   +  V+ E   FY+GF   L+    +K+   A+  + 
Sbjct: 144 EVQRKAKIIQSYYCGDDPLKRK--IASVMLESFLFYSGFYLPLNWSVHSKLTNTADIIRL 201

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETM-PKGF 284
           I+RDE++H  + I    Q+ + +     + E ++ +  +L++    EI Y  +   P G+
Sbjct: 202 IIRDEAVH-GYYIGYKYQVGLRDESQQRQDELKEHAFDLLYDLYDNEIQYTEDLYDPLGW 260

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341
                   ++++++ AN+  + +G E LF   E   +P    S   +  +  +FF    +
Sbjct: 261 T----EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILASLAPNADENHDFFSGSGS 316

Query: 342 EYQQG 346
            Y  G
Sbjct: 317 SYVIG 321


>gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
 gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
          Length = 338

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 118/306 (38%), Gaps = 43/306 (14%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109
           N W+ TE+    D    +    LT  E    +    F ++++ LV  N+  + A++    
Sbjct: 54  NRWLETELVFAGD---EEDVAALTPGELGFYRFLFTFLSAADDLVTENLGNLAALF---P 107

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFNMYREVPSITAKANWAL 163
             +   Y + Q   EAVH+    Y I  L L         E        P+I  K  W  
Sbjct: 108 QKDILHYYVEQECIEAVHARV--YGIVQLVLFANNEASRREYVAHTINHPAIRDKVEWLE 165

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 SS              + + ++  ++ EG++F   FA I  L   N +    + 
Sbjct: 166 ARVGECSS--------------VAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQS 211

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
              I RDE++H      + N      P    K    +   +  EA  +EI + H   P+ 
Sbjct: 212 NDLISRDEAIHTTASCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRD 267

Query: 284 FVGLNAPSCEQ---YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL---KKEKNFFE 337
              L+A +  Q   Y+ F A+R    I L PLF   + P P  S  + L   +K  NFFE
Sbjct: 268 SHILDAAALRQIDNYVHFCADRLLKMIKLPPLF---DAPAPDCSFPLALMFTEKHTNFFE 324

Query: 338 TRVTEY 343
           +R T Y
Sbjct: 325 SRSTAY 330


>gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum]
          Length = 334

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 114/273 (41%), Gaps = 29/273 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W + N +     + +   L    + +  V     +++     
Sbjct: 42  TGNFWLPEKVPVSNDIKSWGTLNEVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
           +      L   AF E+VH+ ++  I  +L     E+ + +R   E  ++  KA   L Y 
Sbjct: 99  SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   +  V+ E   FY+GF   +     +K+   A+  + 
Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GF 284
           I+RDE++H  + G      +  E P    +E ++ +  +L++    E  Y+ +     G+
Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDDLGW 261

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                   ++++++IAN+  + +G E LF   E
Sbjct: 262 T----EDVKRFLRYIANKALNNLGYEGLFPADE 290


>gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
 gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
          Length = 325

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  WK+   LT +E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
                      AF E+VH+ ++  I ++L   +   + F    E   +  KA   L Y  
Sbjct: 90  TAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFRWASENEHLQKKAKIILAY-- 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                   TG     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 148 -------YTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 194

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      +  E+P     E ++ +  +L+E    E++Y H ++  G VG
Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESPER-QAELKEYTFNLLYELYENEVSYTH-SLYDG-VG 251

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +   ++++ + AN+    +G E +F
Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEAMF 277


>gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 322

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 29/269 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  WK+   L +DE+ M  R        +++      +++     
Sbjct: 30  TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  + ++L   E   E F    E   +  KA+  L Y  
Sbjct: 87  TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSEENEYLQKKAHIVLDYYH 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S      +                + E   FY+GF   +      K+   A+  + I
Sbjct: 147 GNDSEKRKVAS---------------TMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGF 284
           +RDE++H  + I    Q+ + E+     +E +  + ++L +    E  Y  ET+  P G 
Sbjct: 192 IRDEAVH-GYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYDNEELYT-ETLYDPLGL 249

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   ++++++ AN+    +G E LF
Sbjct: 250 T----EDVKKFLKYNANKALMNLGYEALF 274


>gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 320

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 35/272 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108
            +N W+P +VP+ +D+  W + N  T + +L I+   G   +    + N +    +    
Sbjct: 28  TSNFWLPEKVPLSNDIPSWSTLN--TRERQLTIRVFTGL--TLLDTIQNTLGAPTLMPDA 83

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165
             P     L   +F EAVH+ ++  I ++L L   E+ + YR   E P++  K++  L +
Sbjct: 84  VTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSH 142

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            ++             D   ++   V  V  E   FY+GF   +      K+   A+  +
Sbjct: 143 YRS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIR 187

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PK 282
            I+RDE++H  + G      +   +P       QQ+ +   ++  LL+  Y +E +   +
Sbjct: 188 LIIRDEAVHGYYIGYKFQRALAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQE 240

Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
            + G+      ++++ + AN+    +G E LF
Sbjct: 241 LYDGVGWTEDVKKFLHYNANKALMNLGYEALF 272


>gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
 gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
          Length = 339

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W+    L DD +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+   +  P     L    F E+VH+ ++  I ++L   + ++  ++    +     N 
Sbjct: 82  TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A++       PS     K     FL          E   FY+GF   L     NK+  +A
Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277
           E  + I+RDES+H  + I    Q+ + +    T++ QQ  +      L+E    E  Y H
Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334
               +  VG        ++++ AN+    +G +PLF  T    NP   M+ +       +
Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302

Query: 335 FFETRVTEYQQGA 347
           FF      Y+ GA
Sbjct: 303 FFSQVGNGYRMGA 315


>gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
 gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
          Length = 319

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W+S N    +++L I+   G          A + SL+A+ + 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQSLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADALT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                    P     L   +F EAVH+ ++  I ++L            +   + A   W
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTRDVDAAYAW 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + +                +D+   +   +  V  E   FY+GF   +      K+   A
Sbjct: 125 SEENAPLQRKAQIILAHYASDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +  + I+RDE++H  + I    Q  +E  P    ++ +  +  +L E    E+ Y  E  
Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQKGMEKLPDAAREDLKNFALDLLMELYDNEVRYTEELY 241

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                G +A   + ++ + AN+    +G E LF
Sbjct: 242 AD--TG-HAEDVQAFLCYNANKAMMNLGYEALF 271


>gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
           platensis NIES-39]
          Length = 123

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314
           Q +   M   A   E  + +  +    +G+   S EQY +++AN R   IGLE L+   K
Sbjct: 19  QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 78

Query: 315 YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352
           Y ++P+  +    D KKE     NFFE  VT Y   + +  WD
Sbjct: 79  YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121


>gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 27/207 (13%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V      A+      
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVG---APALMSDALT 84

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168
           P     +   +F EAVH+ ++  I ++L    D    ++   E  S+  KAN  L+Y Q 
Sbjct: 85  PHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSEECESLQRKANLVLEYYQ- 143

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                       AD    +   +  V  E   FY+GF   +      K+   A+  + I+
Sbjct: 144 ------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLII 189

Query: 229 RDESLHLNF-------GIDVINQIKIE 248
           RDE++H  +       G++++++ + E
Sbjct: 190 RDEAVHGYYIGYKYQKGLEIVSEARRE 216


>gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 318

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 26/302 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +DL  W   N    +E+    R      + ++L      +++     
Sbjct: 26  TGNFWLPEKIPVSNDLPKWGLMNA---EEQWATMRVFAGLTALDTLQGAVGAISLMPDAV 82

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   AF EAVH+ ++  I  +L              P I     WA +     
Sbjct: 83  TPHEEAVLCNIAFMEAVHAKSYSNIFMTLS-----------STPEINRAFRWAEESETLR 131

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +      + D   ++       + E   FY+GF   L       +   A+  + I+R
Sbjct: 132 YKSTRVREFYEGDNSLMRK--AASTLLESFLFYSGFYLPLRFASRGYLTNTADVIRLIIR 189

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      +K  NP    +  +     ++ +    EI Y      K +  L 
Sbjct: 190 DEAVHGYYIGYKYQQAVKQLNPAQ-QQGLKDSVFDLVFDLYDNEITYTE----KIYDALG 244

Query: 289 -APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++++ AN+  + +G E LF   E   +P    S   D  +  +FF    + Y 
Sbjct: 245 WTEDVKRFLRYNANKALNNLGYEGLFPSDECRVDPAILSSLAPDANETHDFFSGSGSSYV 304

Query: 345 QG 346
            G
Sbjct: 305 IG 306


>gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
 gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
          Length = 339

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W+    L DD +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+   +  P     L    F E+VH+ ++  I ++L   + ++  ++    +     N 
Sbjct: 82  TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A++       PS     K     FL          E   FY+GF   L     NK+  +A
Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277
           E  + I+RDES+H  + I    Q+ + +    T++ QQ  +      L+E    E  Y H
Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334
               +  VG        ++++ AN+    +G +PLF  T    NP   M+ +       +
Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302

Query: 335 FFETRVTEYQQGA 347
           FF      Y+ GA
Sbjct: 303 FFSQVGNGYRMGA 315


>gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri DSM 20016]
 gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri JCM 1112]
 gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
 gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
          Length = 339

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W+    L DD +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+   +  P     L    F E+VH+ ++  I ++L   + ++  ++    +     N 
Sbjct: 82  TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A++       PS     K     FL          E   FY+GF   L     NK+  +A
Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277
           E  + I+RDES+H  + I    Q+ + +    T++ QQ  +      L+E    E  Y H
Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334
               +  VG        ++++ AN+    +G +PLF  T    NP   M+ +       +
Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302

Query: 335 FFETRVTEYQQGA 347
           FF      Y+ GA
Sbjct: 303 FFSQVGNGYRMGA 315


>gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
 gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
          Length = 324

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 42/310 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   AF E+VH+ ++  I ++L     E+ + +R   E  ++  KA   L+Y 
Sbjct: 89  TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEYY 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 148 R-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192

Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           I+RDE++H  +       G+   ++ +         E +  +  +L E    E+ Y  + 
Sbjct: 193 IIRDEAVHGYYIGYKFQRGLAAADEAR-------RTELKDYTYELLFELYDNEVEYTQDL 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
             +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF
Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFF 302

Query: 337 ETRVTEYQQG 346
               + Y  G
Sbjct: 303 SGSGSSYVIG 312


>gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           ulcerans Agy99]
 gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium ulcerans Agy99]
          Length = 324

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 42/310 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   AF E+VH+ ++  I ++L     E+ + +R   E  ++  KA   L+Y 
Sbjct: 89  TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEYY 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   V   + E   FY+GF   +      K+   A+  + 
Sbjct: 148 R-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192

Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           I+RDE++H  +       G+   ++ +         E +  +  +L E    E+ Y  + 
Sbjct: 193 IIRDEAVHGYYIGYKFQRGLAAADEAR-------RTELKDYTYELLFELYDNEVEYTQDL 245

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336
             +  VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF
Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFF 302

Query: 337 ETRVTEYQQG 346
               + Y  G
Sbjct: 303 SGSGSSYVIG 312


>gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 317

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 27/279 (9%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + +
Sbjct: 20  TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGM 73

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+ + +  P     L    F E+VH+ ++  I  +L        N   E+  I A ++ 
Sbjct: 74  AALRKDIRTPHETAVLNNIQFMESVHAKSYSSIFETL--------NTPSEIDEIFAWSD- 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + ++ Q  +   +       D E      +  V  E   FY+GF   L     N++  +A
Sbjct: 125 SEEFLQNKTKRIYELY---HDDEHPLKKKISSVFLETFLFYSGFFTPLYYLGHNQLNNVA 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHE 278
           E  + I+RDES+H   G  +  + ++    L   E Q+    M   L++    E  Y H 
Sbjct: 182 EIIKLILRDESVH---GTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHT 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              +  VG        + ++ AN+    +G +PLF  TE
Sbjct: 239 LYDQ--VGW-TDEVLTFTRYNANKALMNLGQDPLFPDTE 274


>gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 328

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 25/271 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  W + N L     + +   L    + +  V     +++     
Sbjct: 36  TGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVG---AVSMIPDAI 92

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I  +L   +   E F    E  ++  KA   L Y +
Sbjct: 93  TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYE 152

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                    G     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 153 ---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLI 197

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      ++ + P    +E ++ +  +L++    EI Y  +      +G
Sbjct: 198 IRDEAVHGYYIGYKYQQAVREQTPER-QEELKEYTFDLLYDLYDNEIQYTEDLYDD--LG 254

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++++++ AN+  + +G E LF   E
Sbjct: 255 W-TEDVKRFLRYNANKALNNLGYEGLFPADE 284


>gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8]
 gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M]
 gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8]
 gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8]
 gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8]
 gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8]
          Length = 305

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 30/297 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P+++P+  D++     + L+D ++   +    F   +E LV  NI   +  + ++ 
Sbjct: 26  NRWFPSQIPLHLDVS---HVHQLSDADKDFYRFLFTFLGMAERLVNFNIE-DLVTNFNSH 81

Query: 112 ECRQYLLRQAFEEAVHSHTFQYII-TSLGLDEGELFNMYREV---PSITAKANWALQYTQ 167
           +   Y   Q   E +H   +  I+        GEL     ++   P++  K  W      
Sbjct: 82  DVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYAAKIILDPALCEKLEW------ 135

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQY 226
            L S      TK       Q + +F +V EG++F + F  I SL R    M G+     Y
Sbjct: 136 -LHSRVRKATTK------AQKILMFLIV-EGIYFISSFYSI-SLCRVRGIMPGVCLANDY 186

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE LH      + N +      +  K    + + +  EA  +EI +  +    G   
Sbjct: 187 ISRDELLHTKAASMLYNTMV----EIQEKPSHAEVQALFREAVNIEIRFI-QAKAAGVTL 241

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +N     ++++  A+R    I + P+F  T  P           K  NFFE   ++Y
Sbjct: 242 VNVVDIRRFLEATADRILRDIFVPPIFG-TPPPEACPLSYTGSFKAVNFFERDNSDY 297


>gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 320

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W + N       + +   L    + ++ +    ++       
Sbjct: 28  TSNFWLPEKVPLSNDIPSWSTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   +F EAVH+ ++  I ++L L   E+ + YR   E P++  K++  L + 
Sbjct: 85  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSHY 143

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           ++             D   ++   V  V  E   FY+GF   +      K+   A+  + 
Sbjct: 144 RS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 188

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKG 283
           I+RDE++H  + G      +   +P       QQ+ +   ++  LL+  Y +E +   + 
Sbjct: 189 IIRDEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQEL 241

Query: 284 FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
           + G+      ++++ + AN+    +G E LF
Sbjct: 242 YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272


>gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W + N +     + +   L    + +  V     + +    + P
Sbjct: 41  NFWLPEKVPLSNDVPSWSTLNDMEKQATMRVFTGLTMLDTIQGTVG---AVKLIEDAATP 97

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    +F E+VH+ ++  I  +L              P I     W+ +  +  + 
Sbjct: 98  HEEAVFTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEKLQNK 146

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                   + D    +   +  V+ E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 147 AKIILDFYEGDDPMKKK--IASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204

Query: 232 SLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           S+H  + G      ++ E P    +E ++ +  +L E    E  Y  +   +  +G    
Sbjct: 205 SVHGYYIGYKYQRALENETPER-QEELKEHTFDLLLELYDNEAQYTEDLYDE--LGWTE- 260

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317
             ++++++ AN+  + +G E LF   E
Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287


>gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W + N +     + +   L    + +  V     + +    + P
Sbjct: 41  NFWLPEKVPLSNDVPSWSTLNDMEKQATMRVFTGLTMLDTIQGTVG---AVKLIEDAATP 97

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    +F E+VH+ ++  I  +L              P I     W+ +  +  + 
Sbjct: 98  HEEAVFTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEKLQNK 146

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                   + D    +   +  V+ E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 147 AKIILDFYEGDDPMKKK--IASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204

Query: 232 SLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           S+H  + G      ++ E P    +E ++ +  +L E    E  Y  +   +  +G    
Sbjct: 205 SVHGYYIGYKYQRALENETPER-QEELKEHTFDLLLELYDNEAQYTEDLYDE--LGWTE- 260

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317
             ++++++ AN+  + +G E LF   E
Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287


>gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
 gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
          Length = 320

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK +      W  T +P+ +DL  W     L   E+ M+ +  G     ++L + + V
Sbjct: 21  TWEKLVEQF---WTDTRIPVSNDLDDWAR---LPKAEKDMVGKVFGGLTLLDTLQSQDGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            A+   +             F E++H+ ++  I ++L        N   E+  I      
Sbjct: 75  QALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTL--------NSKVEIDEIFQWTNT 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ   +  +  +  GT+   +       V  V+ E   FY+GF   L     NK+  
Sbjct: 127 NDLLQIKASTINDIYQNGTELQRK-------VASVMLESFLFYSGFFAPLHYLGNNKLPN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    QI     P    +E +  +  +L +    E+ YA  
Sbjct: 180 VAEIIKLILRDESVHGTY-IGYKFQIAYNQLPDNEKEEMKNWTYELLFKLYQNEVKYAEY 238

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              +  +G      + ++++ AN+    +G +PLF  T N
Sbjct: 239 LYDE--IGW-TERVKVFLRYNANKALQNLGFDPLFPDTAN 275


>gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis ATCC 367]
 gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus brevis ATCC 367]
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 67/298 (22%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L  D + ++    G     ++L + + +
Sbjct: 23  TWEK---LTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGM 76

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+ R +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 77  AALRRDIRTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDEIDEI------ 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQ-------DLF----------VFYVVFEGMWFYTG 204
             Q++ +              +EFLQ       DL+          +  V  E   FY+G
Sbjct: 123 -FQWSDS--------------EEFLQNKTKRIYDLYHDDEHPLKKKISSVFLETFLFYSG 167

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H   G  +  + ++    L   E QQ    M
Sbjct: 168 FFTPLYYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQLGMKELTDAEQQQMKDWM 224

Query: 265 ---LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316
              L++    E  Y H    +  +G      E+ + FI   AN+    +G +PLF  T
Sbjct: 225 YDFLYQLYDNEEKYTHTLYDQ--IGW----TEKVLTFIRYNANKALMNLGQDPLFPDT 276


>gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
          Length = 296

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 42/296 (14%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++      N W+P +VP+ +D+  W +   LT  E+ +  R       
Sbjct: 17  NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150
            +++      +++      P     L   AF E+VH+ ++  I ++L     E+ + +R 
Sbjct: 71  LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129

Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             E  ++  KA   LQ  +              D+   +   V   + E   FY+GF   
Sbjct: 130 SEENRNLQRKAEIVLQSYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKS 261
           +      K+   A+  + I+RDE++H          G+ +++ +          E +  +
Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYT 227

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +L E    E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E
Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDE 280


>gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 333

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 121/303 (39%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LTD E+ +  R        +++      +++     
Sbjct: 41  TGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAL 97

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +   E F    E   +  KA   + Y +
Sbjct: 98  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENEYLQRKAQIVMDYYR 157

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 158 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLI 202

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      ++++ P    +E +  +  +L E    E  Y      +  VG
Sbjct: 203 IRDEAVHGYYIGYKYQRGLEVQTPER-RQELKDYTFELLFELYDNETDYTEALYDE--VG 259

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L +   ++++++ AN+    +G E +F   E   NP    +   +  +  +FF    + Y
Sbjct: 260 L-SEDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSALSPNADENHDFFSGSGSSY 318

Query: 344 QQG 346
             G
Sbjct: 319 VIG 321


>gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
          Length = 321

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 28/280 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++ + L   E+  +    G     +++ + + +
Sbjct: 22  TWEK---LTEQFWLDTRIPLSNDLDDWRTLSPL---EKTTVGYVFGGLTLLDTVQSESGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             + + +  P     L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 76  DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKAEIADIFEWTNT 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ      +  +  GT    +       +  V  E   FY+GF   L     NK+  
Sbjct: 128 NPYLQKKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           +AE  + I+RDES+H  + I    Q+   E P    ++ +     +L+E    E  Y  E
Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQQKLKDWMYDLLYELYENEERYTEE 239

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              +  +G      + ++++ AN+    +G +PLF  T N
Sbjct: 240 LYDE--IGW-TEEVKTFLRYNANKALMNLGQDPLFPDTAN 276


>gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           HI4320]
          Length = 322

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 25/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +D+  W   N LT  E+ +  R        +++        +      P
Sbjct: 32  NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                L    F EAVH+ ++  I ++L L  D  + +    E   +  K++  L+Y Q  
Sbjct: 89  HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQ-- 146

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D + L+   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 147 ------------DSDPLKKK-IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 193

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G    NQ+ +    L  +  +  + ++L +    E+ Y  +      VG  
Sbjct: 194 DEAVHGYYIGYKFQNQL-LNKSSLEKQNIKDFAFSLLLDLYDNEVKYTEDLYDS--VGW- 249

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               ++++ + AN+    +G E LF
Sbjct: 250 TEDVKKFLHYNANKALMNLGYEALF 274


>gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
 gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
          Length = 335

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 110/249 (44%), Gaps = 14/249 (5%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           I  H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN 
Sbjct: 78  IIDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANK 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   
Sbjct: 138 IDTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASC 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E   
Sbjct: 191 DIIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY- 249

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRV 340
            G +GL   + ++Y+++ AN+    +G E  F+  +N  P +   ++++  + +FF  + 
Sbjct: 250 -GDLGLTG-NVKEYIRYNANKALMNLGFEEEFE-VKNVNPIVLNGLNVETTQHDFFSKKS 306

Query: 341 TEYQQGAEL 349
           T Y++  E+
Sbjct: 307 TNYEKALEV 315


>gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 330

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/360 (19%), Positives = 143/360 (39%), Gaps = 50/360 (13%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W++      N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W++   +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           H+ ++  I ++L     +DE   F+   E   +  KA   L Y +  S       +    
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEGDSPLKRKVAS---- 165

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----- 237
                       + E   FY+GF   +      K+   A+  + I+RDE++H  +     
Sbjct: 166 -----------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKY 214

Query: 238 --GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
             G++++++ K         E +  +  +L+E    E+ Y         VGL     E++
Sbjct: 215 QKGLELVSEDK-------RGELRDYTYDLLNELYDNEVEYTRSLYEP--VGLTQ-DVEKF 264

Query: 296 MQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +++  N+    +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 265 LRYNGNKALMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
          Length = 377

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ LF      EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +
Sbjct: 198 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 256

Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299
              ++   W K FQQ   + + +L E    E  +++    +G   VGLN     +++ + 
Sbjct: 257 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 314

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334
           A       G+   F    E P  +M + +++ KE+N
Sbjct: 315 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 350


>gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 322

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 29/269 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  WK+   L +DE+ M  R        +++      +++     
Sbjct: 30  TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  + ++L   E   E F    E   +  KA+  L Y  
Sbjct: 87  TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSEENEYLQKKAHIVLDYYH 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                    G     ++      V   + E   FY+GF   +      K+   A+  + I
Sbjct: 147 ---------GNDPEKRK------VASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGF 284
           +RDE++H  + I    Q+ + E+     +E +  + ++L +    E  Y  ET+  P G 
Sbjct: 192 IRDEAVH-GYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYDNEELYT-ETLYDPLGL 249

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   ++++++ AN+    +G E LF
Sbjct: 250 T----EDVKKFLKYNANKALMNLGYEALF 274


>gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
 gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 329

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 121/298 (40%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +      IV     H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVEGHQR 86

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   E+F   ++   +  KA+  +       
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHTVV------- 139

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   K  D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 140 --GLYRAIKKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +       E ++ +  +L E    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +P F+  E+  P +   ++ K K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 176

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           + P++Y   W+ Y  A  + W   EV + + D   W  K  L  DE+  I   L FFA+S
Sbjct: 66  IFPIQYPDIWDMYKKAVASFWTIEEVSLHKQDKKDWNEK--LNSDEKRFISHVLAFFAAS 123

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
           + +V  N++    + +  PE R +   Q   E +HS  +  +I +   D  E
Sbjct: 124 DGIVNENLIEKFSQEVKIPEARCFYGFQIAIENIHSEMYSLLIETYISDPKE 175


>gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus
           phage SA1]
          Length = 357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ LF      EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +
Sbjct: 178 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 236

Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299
              ++   W K FQQ   + + +L E    E  +++    +G   VGLN     +++ + 
Sbjct: 237 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 294

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334
           A       G+   F    E P  +M + +++ KE+N
Sbjct: 295 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 330


>gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage Felix 01]
 gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
 gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
 gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
          Length = 357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ LF      EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +
Sbjct: 178 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 236

Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299
              ++   W K FQQ   + + +L E    E  +++    +G   VGLN     +++ + 
Sbjct: 237 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 294

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334
           A       G+   F    E P  +M + +++ KE+N
Sbjct: 295 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 330


>gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 319

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSEAEKDLVGKVFGGLTLLDTMQSQTGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
            AI   +        L    F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 75  EAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFDWTNN 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQ    + +  +  G   A Q+ +   F+     E   FY+GF   L     NK+  
Sbjct: 127 NEYLQKKAEIINEIYLHGG--ALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLSN 179

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + ++    L ++E Q + R  +++  LL   Y +E 
Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQSEFRDWMYD--LLYQLYENEE 233

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
           +    +       E+ M F+   AN+    +G +PLF
Sbjct: 234 LYTKTLYDEVGWTEEVMTFLRYNANKALMNLGQDPLF 270


>gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
 gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
          Length = 326

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 130/321 (40%), Gaps = 31/321 (9%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L   K    W++ +    N W+P +VP+ +D+  W +   LT++E+ +  R       
Sbjct: 19  NRLEDEKDAEVWDRLVG---NFWLPEKVPVSNDIQSWAT---LTEEEKTLTMRVFTGLTL 72

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149
            +++      +++      P         AF E+VH+ ++  I ++L    +  E F   
Sbjct: 73  LDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFRWS 132

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E  ++  KA   ++Y +  S       +                + E   FY+GF   +
Sbjct: 133 EENVNLQRKAEIVMKYYKGDSPLKRKVAS---------------TLLESFLFYSGFYLPM 177

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
                 K+   A+  + I+RDE++H  + G      ++  +P    +E +  +  +L E 
Sbjct: 178 YWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLSPEE-RQELKDYTFELLFEL 236

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
              E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    + 
Sbjct: 237 YDNEVEYTQDLYDG--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSAL 293

Query: 326 VIDLKKEKNFFETRVTEYQQG 346
             +  +  +FF    + Y  G
Sbjct: 294 SPNADENHDFFSGSGSSYVIG 314


>gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
 gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
          Length = 335

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           I  H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN 
Sbjct: 79  IIDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANK 138

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   
Sbjct: 139 IDAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASC 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E   
Sbjct: 192 DIIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY- 250

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRV 340
            G +GL     ++Y+++ AN+    +G E  F+  +N  P +   ++++  + +FF  + 
Sbjct: 251 -GDLGLTG-DVKEYIRYNANKALMNLGFEEEFE-VKNVNPIVLNGLNVETTQHDFFSKKS 307

Query: 341 TEYQQGAEL 349
           T Y++  E+
Sbjct: 308 TNYEKALEV 316


>gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 126/321 (39%), Gaps = 49/321 (15%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 29  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168
           P     L   +F EAVH+ ++  I ++L    +    F        +  KA   L Y Q 
Sbjct: 86  PHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQCKAQLMLGYYQ- 144

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                       AD+   +   +  V  E   FY+GF   +      K+   A+  + I+
Sbjct: 145 ------------ADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLII 190

Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           RDE++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   
Sbjct: 191 RDEAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYG 243

Query: 282 KG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFF 336
           +   F  ++A  C     + AN+    +G E LF       NP    +   +  +  +FF
Sbjct: 244 ESGWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFF 298

Query: 337 ETRVTEYQQG-----AELKWD 352
               + Y  G     A+  WD
Sbjct: 299 SGSGSSYVIGKMEETADDDWD 319


>gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European catfish virus]
 gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European sheatfish virus]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HWM TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R  
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLFRA------------VLNEGVSLFAAFVMLLTFQRRG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
 gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
          Length = 331

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 28/314 (8%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           WE+ L      W+ TE     D+  W   N L  + R   K+ LG     ++L ++  + 
Sbjct: 21  WEQNLK---QFWIDTEYIPSKDIDSW---NSLEQEMREAYKKALGGLTLLDTLQSHTGMP 74

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKAN 160
            +  H+ + + +  L      E +H+ ++  I T++    +  E+FN  +E   +  KA 
Sbjct: 75  KVIDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKAR 134

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
               Y + L         KDA  E +       V+ E   FY+GF   L L    +M   
Sbjct: 135 TIDSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGAS 187

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYA 276
            +  + I+ DES+H  F    +  +  E    +T E QQ+    L E   +    E+ Y 
Sbjct: 188 CDIIKKIIADESIHGVF----VGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYT 243

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNF 335
            E   +  +GL+    ++Y+++ AN+    +G +  F+  E NP       ++   + +F
Sbjct: 244 DEVYTE--IGLSG-DVKEYIRYNANKALMNLGFDEEFEVKEVNPIVLNGLNVE-TTQHDF 299

Query: 336 FETRVTEYQQGAEL 349
           F  + T Y++  E+
Sbjct: 300 FSKKSTNYEKALEI 313


>gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
 gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 28/237 (11%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L++R   + +LP++     +K        W P ++ +  D   W+    L +D R  ++ 
Sbjct: 12  LSSRGLRHDILPMRLYHKAKKL-----GTWDPRDIDLSQDCQDWQQ---LAEDPRTRLRN 63

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--EEAVHSHTFQYIITSLGLDE 142
            +  F + E  V  +++  I          + L    F  EE  H+  F+ I+  +   E
Sbjct: 64  LILSFQAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILDEVMQAE 123

Query: 143 GELF-----NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           G+L      N  R++ S        L     L+ PS     + +         ++ ++ E
Sbjct: 124 GDLHGVRTANNTRDLFSDDLPREMNL----LLTDPSPVNQARAS--------VLYNMIVE 171

Query: 198 GMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           G+   TG+     L  + N M G+ +  QYI RDES H+ +G+ +I+++  ++  LW
Sbjct: 172 GVLAETGYFSFFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLW 228


>gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus
           nasoniae]
          Length = 321

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +D+  W   N LT +E+ +  R        +++  N    A+      P
Sbjct: 31  NFWLPEKIPLSNDIPTW---NTLTKEEKKLTIRVFTGLTLLDTIQNNVGAPALMTDALTP 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY---T 166
                +   +F EAVH+ ++  I ++L L  D  + +    E  ++  KA+  L++   T
Sbjct: 88  HEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQWSEENSALQKKAHLILEHYCNT 147

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
             L                     +  V  E   FY+GF   +      K+   A+  + 
Sbjct: 148 HPLKKK------------------IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 189

Query: 227 IMRDESLH 234
           I+RDE++H
Sbjct: 190 IIRDEAIH 197


>gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 323

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 31/268 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  W   N LT  E+ +  R    L    + ++ V    ++A     
Sbjct: 33  NFWLPEKVPLSNDINSW---NTLTATEKKLTIRVFTGLTLLDTIQNTVGAPCLMA---DA 86

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYT 166
             P     L   +F EAVH+ ++  I ++L    D  E +    E  ++  KA   L Y 
Sbjct: 87  QTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENSALQNKAKIILSYY 146

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                          D   L+   V  V  E   FY+GF   +      K+   A+  + 
Sbjct: 147 --------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 191

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I+RDE++H  + G      +   N      E ++ + ++L +    EI Y  E      V
Sbjct: 192 IIRDEAIHGYYIGYKFQKSLATYNEQQ-QNEIKEFTFSLLFDLYENEIKYTQELYDS--V 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G  +   + ++ + AN+    +G E LF
Sbjct: 249 GW-SEDVKSFLHYNANKALMNLGYEALF 275


>gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 296

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 21/217 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P E+ +  D   + +   L + E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166
             ++   +F E +HS ++ +II ++  D   +F+   +   I A+A       +  ++YT
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 165

Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217
           Q    L   +   G K      +E  + L++  +   V E + FY  FA   +      M
Sbjct: 166 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252
            G A+  + I RDE+LHL     ++N ++  +++P +
Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGVDDPEM 262


>gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 126/321 (39%), Gaps = 49/321 (15%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 29  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168
           P     L   +F EAVH+ ++  I ++L    +    F        +  KA   L Y Q 
Sbjct: 86  PHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLDYYQ- 144

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                       AD+   +   +  V  E   FY+GF   +      K+   A+  + I+
Sbjct: 145 ------------ADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLII 190

Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           RDE++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   
Sbjct: 191 RDEAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYG 243

Query: 282 KG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFF 336
           +   F  ++A  C     + AN+    +G E LF       NP    +   +  +  +FF
Sbjct: 244 ESGWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFF 298

Query: 337 ETRVTEYQQG-----AELKWD 352
               + Y  G     A+  WD
Sbjct: 299 SGSGSSYVIGKMEETADDDWD 319


>gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 202

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 333

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 124/319 (38%), Gaps = 45/319 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 42  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 98

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P     L   +F EAVH+ ++  I ++L                + A   W+        
Sbjct: 99  PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCDPLQR 147

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G   AD+   +   +  V  E   FY+GF   +      K+   A+  + I+RD
Sbjct: 148 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 205

Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           E++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   + 
Sbjct: 206 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 258

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338
             F  ++A  C     + AN+    +G E LF       NP    +   +  +  +FF  
Sbjct: 259 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 313

Query: 339 RVTEY-----QQGAELKWD 352
             + Y     ++ A+  WD
Sbjct: 314 SGSSYVIGKMEETADDDWD 332


>gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus
           denitrificans PD1222]
 gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Paracoccus denitrificans PD1222]
          Length = 329

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 25/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   L  +ER +  R        +++       A+      P
Sbjct: 39  NFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTP 95

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQYT 166
                L   AF EAVH+ ++  I ++L L            P + A   WA     LQ  
Sbjct: 96  HEEAVLSNIAFMEAVHARSYSSIFSTLCL-----------TPEVDAAFRWAEENPHLQQK 144

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
             L    +  G+    ++      +  V  E   FY+GF   +      K+   A+  + 
Sbjct: 145 ARLVLEEYKAGSDPLKRK------IASVFLESFMFYSGFYLPMYWSSRAKLTNTADLIRL 198

Query: 227 IMRDESLH 234
           I+RDE++H
Sbjct: 199 IIRDEAVH 206


>gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 327

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 112/268 (41%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W + +       + +   L    + +++V    ++   +   
Sbjct: 35  TSNFWLPEKVPLSNDIPSWATLSAKEKQLTIRVFTGLTLLDTVQNVVGAPTLM---KDAV 91

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P          F EAVH+ ++  I ++L   +D  E +    E  ++  KA   L Y  
Sbjct: 92  TPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSEENVALQNKAAIILSYY- 150

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D +   ++   V  V  E   FY+GF   +      K+   A+  + I
Sbjct: 151 ------------DGEDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 196

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      + +E+     ++ ++++  ++ +    EI Y  E     + G
Sbjct: 197 IRDEAVHGYYIGYKFQKALALESEER-QRQIKEQAFDLIQDLYDNEIRYTEEL----YDG 251

Query: 287 LN-APSCEQYMQFIANRRCHQIGLEPLF 313
           +  +   ++++ + AN+    +G E LF
Sbjct: 252 VGWSEDVKKFLHYNANKALMNLGYEALF 279


>gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 329

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 25/271 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  WK+   LT+ E+    R        +++      +++     
Sbjct: 37  TGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGLTLLDTIQGTVGAVSLLPDAK 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I  +L       + F    E  ++  KA   + Y  
Sbjct: 94  TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKIVMSY-- 151

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      K AD    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 152 ----------YKGADPLKKK---VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLI 198

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G    N    E P    +E +  +  +L+E    EI Y  +   +  +G
Sbjct: 199 IRDEAVHGYYIGYKFQNGYN-ELPAEKQEEIKGYTFDLLYELYDNEIDYTEDLYDE--LG 255

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++++++ AN+  + +G E LF   E
Sbjct: 256 WTE-DVKRFLRYNANKALNNLGFEGLFPADE 285


>gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
 gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
          Length = 320

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 45/319 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 29  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P     L   +F EAVH+ ++  I ++L                + A   W+        
Sbjct: 86  PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCEPLQR 134

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G   AD+   +   +  V  E   FY+GF   +      K+   A+  + I+RD
Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMHFSSRGKLTNTADLIRLIIRD 192

Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           E++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   + 
Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338
             F  ++A  C     + AN+    +G E LF       NP    +   +  +  +FF  
Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 300

Query: 339 RVTEYQQG-----AELKWD 352
             + Y  G     A+  WD
Sbjct: 301 SGSSYVIGKTEETADDDWD 319


>gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
          Length = 325

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 24/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++        + +    P
Sbjct: 34  NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  + ++L    +  E F    E   + AK+   L      
Sbjct: 91  HEEAVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYDAT 150

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +SP                  +  V  E   FY+GF   +      ++   A+  + I+R
Sbjct: 151 ASPLRKK--------------IASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIR 196

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       KE +  +  +L +   +E  Y  E +  G +GL 
Sbjct: 197 DEAIH-GYYIGYKFQRGMERLSEAERKELKDFAFGLLFDLYDIEARYT-EQLYDG-LGLT 253

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               + ++ + AN+    +G E LF
Sbjct: 254 -EDVKNFLHYNANKALQNLGFEALF 277


>gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod
           iridovirus/15/04.11.92/DNK]
 gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Pike-perch iridovirus]
          Length = 202

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
 gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
          Length = 329

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 39/299 (13%)

Query: 29  SDVNQLLPLKYGWAW---EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           SD+ + +P    W     +K L   N    N W+P +VP+ +D+  W + +   D+++L 
Sbjct: 8   SDMKRAVPRAVNWNRLQDDKDLEIWNRLTVNFWLPEKVPLSNDIQSWATLH--PDEQQLT 65

Query: 82  IK--RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL- 138
           I+    L    + ++ V    ++        P     L   AF EAVH+ ++  + ++L 
Sbjct: 66  IRVFTGLTLLDTIQNTVGAPTLMP---DALTPHEEAVLTNIAFMEAVHARSYSSVFSTLC 122

Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
              D  E F    E   + AK+   L       SP                  V  V  E
Sbjct: 123 QTADVDEAFRWSEENEHLQAKSRLILDEYGAAGSPLRKK--------------VASVFLE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---LNFGIDVINQIKIENPHLWT 254
              FY+GF   +      K+   A+  + I+RDE++H   + +    + +   E      
Sbjct: 169 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEI 228

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           K+F   + +++ +   +E  Y  E++  G VGL     + ++ + AN+    +G E LF
Sbjct: 229 KDF---AFSLMFDLYEIEGKYT-ESLYDG-VGLTE-DVKHFLHYNANKALMNLGYEALF 281


>gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 122/305 (40%), Gaps = 32/305 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L++ E+ M  R        +++      +++     
Sbjct: 34  VGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
            P         AF E+VH+ ++  I ++L     +DE   F      P++  KA   L+Y
Sbjct: 91  TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FAWSEANPNLQRKAEIVLEY 148

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +              D    +   V   + E   FY+GF   +      K+   A+  +
Sbjct: 149 YR-------------GDDPLKRK--VASTMLESFLFYSGFYAPMYWSSRAKLTNTADLIR 193

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+RDE++H  + G      + +E+      E +  +  +L E    E+ Y       G 
Sbjct: 194 LIIRDEAVHGYYIGYKFQKGLALESQER-QDEIKAYTFELLFELYENEVEYTEALY--GE 250

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341
           +GL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    +
Sbjct: 251 LGLT-EDVKKFLRYNANKALMNLGYEALFPKEETDVNPAILAALSPNADENHDFFSGSGS 309

Query: 342 EYQQG 346
            Y  G
Sbjct: 310 SYVIG 314


>gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp.
           1-1C]
          Length = 324

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 111/271 (40%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L++ +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      AD+   + +   ++  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -----------ADEPLKKKIASTFL--ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G   +++ K        +E +  +  +L +   +E  Y  +    
Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDEAK-------KQEIKDFAFNLLFDLYNIECKYTEDLYDA 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +GL     + ++ + AN+    +G E LF
Sbjct: 249 --IGLT-EDVKVFLHYNANKALMNLGFEALF 276


>gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CFN 42]
 gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Rhizobium etli CFN 42]
          Length = 324

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +     
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAVGLMEDAV 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G  DA ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQYASG--DALKKKVASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285
           DE++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A   E +  G V
Sbjct: 196 DEAVH-GYYIGYKFQRGLET---LSEERRQEIKYFAFD-LLLELYDNEAKYTEALYDG-V 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL +   ++++ + AN+    +G E LF
Sbjct: 250 GL-SEDVKKFLHYNANKALMNLGYEALF 276


>gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
 gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
          Length = 325

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L + E+ M  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L    +  E F    E  ++  KA   L Y  
Sbjct: 90  TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARIILDY-- 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  D E  +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 148 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 194

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q+ + E+     +E +  +  +L E    E  Y  +   +  +G
Sbjct: 195 IRDEAVH-GYYIGYKYQLAVRESSPERQQELKDYTFDLLMELYDNEEQYTEDLYDE--LG 251

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++++ AN+    +G E LF       NP    S   +  +  +FF    + Y
Sbjct: 252 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 310

Query: 344 QQG 346
             G
Sbjct: 311 VMG 313


>gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 324

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 32/305 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L + E+ M  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L    +  E F    E  ++  KA   L Y  
Sbjct: 89  TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARIILDY-- 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  D E  +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF--- 284
           +RDE++H  + I    Q+ +      + E QQ+ +    E  L+E+    E   +     
Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRES---SPERQQELKDYTFE-LLMELYDNEEQYTEDLYDE 248

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341
           +GL     ++++++ AN+    +G E LF       NP    S   +  +  +FF    +
Sbjct: 249 LGL-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGS 307

Query: 342 EYQQG 346
            Y  G
Sbjct: 308 SYVMG 312


>gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus]
          Length = 305

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 118/304 (38%), Gaps = 42/304 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P+++P+  D+A     N  TD E    K    F   +E LV  NI   + +  +  
Sbjct: 26  NRWFPSQIPLSSDVAGIAQLNA-TDRE--FYKFLFVFLGLAEKLVNFNIE-DLVKEFNCH 81

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165
           +   Y   Q   E +H   +  I+       G++  +          P++ AK +W    
Sbjct: 82  DATHYYAEQMAMENIHGKVYANILQLFF--NGDMMKLKEYAVKVVADPTLKAKLDW---- 135

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQY 224
              L +    T T+        +  + +++ EG++F + F  I SL R   M+ GI    
Sbjct: 136 ---LHTRVKNTKTR-------AEKVLIFLLIEGIFFISSFYSI-SLFRVRGMLNGICLAN 184

Query: 225 QYIMRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            YI +DE LH      + N +    E P   W K   Q++         +E+ YA     
Sbjct: 185 DYISKDELLHTRAAAVLYNTLIPAKERPDPAWIKRLFQEA---------VEVEYAFIAAK 235

Query: 282 KGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
              V L  P   ++++Q   +R    IG+  L+  +  P           K  NFFE   
Sbjct: 236 SKNVTLVVPGEIKRFLQATCDRILQSIGVGALYG-SHAPVTCPLSYNGCIKSVNFFEREG 294

Query: 341 TEYQ 344
           T+Y 
Sbjct: 295 TDYS 298


>gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
          Length = 330

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/360 (19%), Positives = 142/360 (39%), Gaps = 50/360 (13%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W++      N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W++   +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWRA---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           H+ ++  I ++L     +DE   F+   E   +  KA   L Y +  S       +    
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEGDSPLKRKVAS---- 165

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----- 237
                       + E   FY+GF   +      K+   A+  + I+RDE++H  +     
Sbjct: 166 -----------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKY 214

Query: 238 --GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
             G++ +++ K         E +  +  +L+E    E+ Y         VGL     E++
Sbjct: 215 QKGLERVSEDK-------RGELRDYTYDLLNELYDNEVEYTRSLYEP--VGLTQ-DVEKF 264

Query: 296 MQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +++  N+    +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 265 LRYNGNKALMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 323

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  E +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      ++   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194

Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + G      + K++N     +E +  +  +L +    EI Y  E++  G VG 
Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDNNR--RQEIKNFAFDLLQDLYDNEIHYT-ESLYDG-VGW 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++ + AN+    +G E LF  ++   NP    +   +  +  +FF    + Y 
Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309

Query: 345 QG 346
            G
Sbjct: 310 IG 311


>gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae
           WPP163]
          Length = 320

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W + N       + +   L    + ++ +    ++       
Sbjct: 28  TSNFWLPEKVPLSNDIPSWGTLNPRERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   +F EAVH+ ++  I ++L L   E+ + YR   E P++  K++  L + 
Sbjct: 85  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSHY 143

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           ++             D   ++   V  V  E   FY+GF   +      K+   A+  + 
Sbjct: 144 RS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 188

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKG 283
           I+RDE++H  + G      +   +P       QQ+ +   ++  LL+  Y +E +   + 
Sbjct: 189 IIRDEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQEL 241

Query: 284 FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
           + G+      ++++ + AN+    +G E LF
Sbjct: 242 YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272


>gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
 gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
          Length = 328

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 123/298 (41%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +    N  +  +  H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPIVADHVEGHQR 86

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   E+F   ++   +  KA   +   Q++ 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQIIVGLYQSI- 145

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   K  D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 146 --------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  + P     E ++ S  +L +    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +  F+  E NP   ++ +    K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDSYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 319

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I    QI ++    +  KE +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIERKELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi]
          Length = 72

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           QY++F+A+R    +G   +F +++NPF WM ++I L+ + NFFE RV +YQ+  
Sbjct: 5   QYIEFVADRLLECLGCSKVF-HSKNPFSWM-DLISLQGKTNFFEKRVADYQKSG 56


>gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
 gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
          Length = 319

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108
            +N W+P +VP+ +D+  W S N   D+++L I+   G   +    + N +   A+    
Sbjct: 27  TSNFWLPEKVPLSNDIPAWNSLNA--DEQQLTIRVFTGL--TLLDTIQNTVGAPALMADA 82

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYT 166
             P     +   +F EAVH+ ++  I ++L    D    +    +   +  KA   L++ 
Sbjct: 83  VTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYAWSEDNQPLQRKAEIILEHY 142

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                        D  ++ +  +F+     E   FY+GF   +      K+   A+  + 
Sbjct: 143 H----------HDDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRGKLTNTADLIRL 187

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I++DE++H  + G      ++ E+P     E QQ +  +L      E+AY  E +  G V
Sbjct: 188 IIKDEAVHGYYIGYKYQKALEKESPAR-KDELQQFAVELLLALYENELAYT-EALYDG-V 244

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G  +   ++++ + AN+    +G E LF
Sbjct: 245 GW-SEEVKKFLHYNANKALMNLGYEALF 271


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 149/342 (43%), Gaps = 30/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC-NNHWMPTEVPMQDDLALWK 69
           QA  ++ NV +KR+         L P  Y  A  +Y+ A  +++W+ TE     D+  +K
Sbjct: 95  QARIRKRNVFEKRL--------NLKPYDYP-ALTEYVDAIRHSYWIHTEFNYTSDIQDFK 145

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHS 128
           +   L++ E+  IK  +   A S+  VA       IY+ +  PE        A  E  H 
Sbjct: 146 AY--LSETEKSAIKNTM--LAISQIEVAVKTFWGDIYKKMPKPEIGAVGSTFAESEVRHH 201

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             + +++  LGL+    F   ++ P +  + N+     + + S        + ++EF + 
Sbjct: 202 DAYSHLLEILGLNNE--FENLKKNPVMMRRVNYLEGALKNVKS--------EDNKEFSES 251

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           + +F +  E +  ++ F  I++  +  N + GI+   +   ++E +H +FGID+I  IK 
Sbjct: 252 IILFSLFIEHVSLFSQFLIIMAFNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKE 311

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQ 306
           ENP  + ++     + M  EA + E         KG +  L     +++++   N+    
Sbjct: 312 ENPDWFDEDHSLMVQEMCEEAFISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGS 371

Query: 307 IGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
           IG+  +F+          W  + I   K  +FF  R   Y +
Sbjct: 372 IGIAKIFEIDATLLAQTDWFDDEIIGTKHGDFFVKRSINYSK 413


>gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 322

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 119/303 (39%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +DL  W++ +       + +   L    + ++++       +     
Sbjct: 30  TSNFWLPEKVPLSNDLPAWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAL 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   +F EAVH+ ++  I ++L    D    +    E  ++  KA   L++ +
Sbjct: 87  TPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYRWSEENEALQNKAKIVLEHYR 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                        AD    +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 147 -------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 191

Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +EN      +E QQ +  +L      E+ Y         VG
Sbjct: 192 IRDEAVH-GYYIGYKYQKALENVDDARREELQQFAIELLLALYENEVVYTEALYAD--VG 248

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEY 343
             A   + ++ + AN+    +G E LF     T NP    +   +  +  +FF    + Y
Sbjct: 249 W-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAALSPNADENHDFFSGSGSSY 307

Query: 344 QQG 346
             G
Sbjct: 308 VMG 310


>gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
 gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
          Length = 339

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 125/313 (39%), Gaps = 32/313 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L  D +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTVQSEAGL 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+ + +        L    F E+VH+ ++  I ++L   E E+  ++    S     N 
Sbjct: 82  TALKQDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPE-EINEIFDWSDSEEYLQNK 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A+Q      +P      K     FL          E   FY+GF   L     NK+  +A
Sbjct: 141 AVQIANIYRNPEEDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277
           E  + I+RDES+H  + I    Q+ +   H  T++ QQ  +      L+E    E  Y H
Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGM---HDRTEKQQQDMKDWMYNFLYELYDNEEKYTH 246

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334
               +  VG        ++++ AN+    +G +PLF  T    NP   M+ +       +
Sbjct: 247 LLYDQ--VGW-TEDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTANHD 302

Query: 335 FFETRVTEYQQGA 347
           FF      Y+ GA
Sbjct: 303 FFSQVGNGYRLGA 315


>gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Bohle iridovirus]
          Length = 202

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 320

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 45/319 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 29  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTELTLLDTIQNTVGAPALMA---DALT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P     L   +F EAVH+ ++  I ++L                + A   W+        
Sbjct: 86  PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCDPLQR 134

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G   AD+   +   +  V  E   FY+GF   +      K+   A+  + I+RD
Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 192

Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           E++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   + 
Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338
             F  ++A  C     + AN+    +G E LF       NP    +   +  +  +FF  
Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 300

Query: 339 RVTEYQQG-----AELKWD 352
             + Y  G     A+  WD
Sbjct: 301 SGSSYVIGKMEETADDDWD 319


>gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 320

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 28/299 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WKS   LT+ E+   K+ L      ++  A++ +  I  H  +   
Sbjct: 25  WVETEFKVSKDIASWKS---LTEAEQDTFKKALAGLTGLDTHQADDGMPLIMLHTQDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY-REVPSITAKANWALQYTQTLS 170
           +         E +H+ ++ +I T+L    +  EL +++  E P +  K+   +     L 
Sbjct: 82  KAVYSFMGMMEQIHAKSYSHIFTTLLPSKETDELLDVWVLEEPHLKYKSEKIVGTYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   F++GF   L L    +M    E  + I+ D
Sbjct: 142 GKEASI----YDQYMAR---VASVFLETFLFFSGFYYPLYLAGQGRMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE-TMPKGF---V 285
           ES+H  F G+D    ++ E   L   E Q+  + M     LLE  YA+E +  +     +
Sbjct: 195 ESIHGVFTGLDA-QSLRNE---LSESEKQKADKEMYQ---LLEDLYANEASYTRSLYDPI 247

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEY 343
           GL       Y+++  N+    +G EP F+  E   P +   +D   K  +FF  +   Y
Sbjct: 248 GL-TDDVMNYVRYNGNKALSNLGFEPYFEEREFS-PIIENALDTSTKNHDFFSVKGDGY 304


>gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma australiense]
 gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma
           australiense]
          Length = 344

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 20/273 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPE 112
           W P ++ +Q DLA W   N L+D+E+    RNL      ++   +  +  I   +  N  
Sbjct: 34  WRPEDISLQGDLAAW---NHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPVIANSMDENKH 90

Query: 113 CRQYLLR--QAFEEAVHSHTFQYIITSLGLDE--------GELFNMYREVPSITAKANWA 162
            ++  L    A E AVH+ ++  I TS   +E        GE     + +  I  +    
Sbjct: 91  QKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDINQLFVWGEKQVNLQNIMKIIFRVYED 150

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+Y   L     +  ++   Q+         V  E   FY+GF   L      K++   E
Sbjct: 151 LEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLETWLFYSGFYYPLYFYGQGKLMQAGE 210

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H   G+  I ++  E  HL+  + +++ +T L            E + +
Sbjct: 211 IINLIIRDESIH---GV-YIGRLATELYHLFDDDTKKELKTWLDATMKTLYKEQMELVKE 266

Query: 283 GFVGLN--APSCEQYMQFIANRRCHQIGLEPLF 313
            +  L+      ++++++ AN+    +G +  F
Sbjct: 267 VYSKLSYLEEDVQKFVRYNANKALMNLGFDAFF 299


>gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
 gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
          Length = 324

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 108/271 (39%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LTD+ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWSS---LTDEERKLTIRVFTGLTLLDTIQNTVGAISLLADAITE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L+  +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      A+    +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -----------ANDPLKKK--IASTLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G   +++ K        KE +  +  +L +   +E  Y  +    
Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDEAK-------KKEIKDFAFNLLFDLYNIECKYTEDLYDA 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +GL     + ++ + AN+    +G E LF
Sbjct: 249 --LGL-TEDVKIFLHYNANKALMNLGFEALF 276


>gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 319

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 114/297 (38%), Gaps = 23/297 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ +EV    D+  +KS   L + E   +KR L   A  E  V       +Y     PE 
Sbjct: 30  WVHSEVEFTADIQDFKSNLSLVEKE--AVKRALLGIAQVEVAV-KTFWGDLYDVFPKPEF 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  A  E  HS  +  ++  LG +    F    EVP    +         T+    
Sbjct: 87  NGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALLEVPIFKER--------NTILKEY 136

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232
                ++A    ++ +  F ++ E    ++ FA ILS  R    M  +A    +   DE 
Sbjct: 137 LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFKGYMKNVANIIAWTSVDEQ 192

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPS 291
           +H N GI ++  I  ENP   TK  ++++   + E  LLE         +G +   +   
Sbjct: 193 VHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYILLEDKMLDWIFEEGELEFFSKKD 251

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              YM++  +    Q+ L   F  T     P  W  E + + +  +FF  R T Y +
Sbjct: 252 LANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEEEVFVNELDDFFAKRPTAYTK 308


>gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris SK11]
 gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 325

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 42/286 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + WEK  S     W+ T VP+ +DL  W+    L  D        L    + +S+    +
Sbjct: 28  YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158
           +    R      C   +    F E+VH+ ++  I ++L   +   ELFN           
Sbjct: 85  LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKM 217
            N  +Q    + +  + +GT  A Q+ +  +F+     E   FY+GF   +L LG  NKM
Sbjct: 134 TNVYMQTKAEIINKIYESGT--ALQKKVASVFL-----ETCLFYSGFYTPLLYLGN-NKM 185

Query: 218 VGIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           +  AE  + I+RDES+H          G + +++ +         EF+     +L++   
Sbjct: 186 INSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QSEFRDWMYELLYKLYE 238

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            E  Y+H    K  VG        ++++ AN+    +G +PLF  T
Sbjct: 239 NEENYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281


>gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 323

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  E +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      ++   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194

Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + G      + K++N     +E +  +  +L +    EI Y  E++  G VG 
Sbjct: 195 DEAVHGYYIGYKFQKGLEKLDNNR--RQEIKNFTFDLLQDLYDNEIHYT-ESLYDG-VGW 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++ + AN+    +G E LF  ++   NP    +   +  +  +FF    + Y 
Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309

Query: 345 QG 346
            G
Sbjct: 310 IG 311


>gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
 gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
          Length = 320

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 35/295 (11%)

Query: 31  VNQLLPLKYGWAW-----EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           ++QL PLK    W     EK L   N    N W+P ++ + +D+  W     LTD ER +
Sbjct: 1   MSQLSPLK-AINWNRPQDEKDLEVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQL 56

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             R        ++L       A+      P     L    F EAVH+ ++  I ++L L 
Sbjct: 57  TLRVFTGLTLLDTLQNTQGAPALMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLT 116

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
                        +    +W+       S  +        DQ   +   +  V  E   F
Sbjct: 117 N-----------EVDCAYHWSEHNKPLQSKAALILSLYRHDQPLKKK--IASVFLESFLF 163

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIK-IENPHLWTKEFQQ 259
           Y+GF   +      ++   A+  + I+RDE++H  + G      +K +  P    ++ Q 
Sbjct: 164 YSGFYLPMYWASRGRLTNTADLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPE--QRDLQL 221

Query: 260 KSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +  +L      E+ Y HE     G+ G       +++ + AN+    +G E LF
Sbjct: 222 FAYELLQTLYDNEVDYTHELYDSVGWSG----DVIKFLHYNANKALMNLGYEALF 272


>gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis Il1403]
 gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis CV56]
          Length = 325

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 40/285 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + WEK  S     W+ T VP+ +DL  W+    L  D        L    + +S+    +
Sbjct: 28  YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158
           +    R      C   +    F E+VH+ ++  I ++L   +   ELFN           
Sbjct: 85  LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
            N  +Q    + +  + +GT    +       V  V  E   FY+GF   L     NKM+
Sbjct: 134 TNVYMQTKAEIINKIYESGTPLQKK-------VASVFLETCLFYSGFYTPLRYLGNNKMI 186

Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
             AE  + I+RDES+H          G + +++ +         EF+     +L++    
Sbjct: 187 NSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QGEFRDWMYELLYQLYEN 239

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           E  Y+H    K  VG        ++++ AN+    +G +PLF  T
Sbjct: 240 EEKYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281


>gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 325

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 40/285 (14%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + WEK  S     W+ T VP+ +DL  W+    L  D        L    + +S+    +
Sbjct: 28  YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158
           +    R      C   +    F E+VH+ ++  I ++L   +   ELFN           
Sbjct: 85  LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
            N  +Q    + +  + +GT    +       V  V  E   FY+GF   L     NKM+
Sbjct: 134 TNVYMQTKAEIINKIYESGTPLQKK-------VASVFLETCLFYSGFYTPLRYLGNNKMI 186

Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
             AE  + I+RDES+H          G + +++ +         EF+     +L++    
Sbjct: 187 NSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QGEFRDWMYELLYQLYEN 239

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           E  Y+H    K  VG        ++++ AN+    +G +PLF  T
Sbjct: 240 EEKYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281


>gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 323

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  E +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      ++   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194

Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + G      + K++N     +E +  +  +L +    EI Y  E++  G VG 
Sbjct: 195 DEAVHGYYIGYKFQKGLEKLDNNR--RQEIKNFAFDLLQDLYDNEIHYT-ESLYDG-VGW 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++ + AN+    +G E LF  ++   NP    +   +  +  +FF    + Y 
Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309

Query: 345 QG 346
            G
Sbjct: 310 IG 311


>gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 144

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHL     ++N ++  +++P +    +E +Q+   +  +A   E  +A      
Sbjct: 3   IARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRD 62

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           G  +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 63  GSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 105


>gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20]
          Length = 324

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L + E+ M  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L    +  E F    E  ++  KA   L Y  
Sbjct: 89  TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARIILDY-- 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  D E  +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q+ + E+      E +  +  +L E    E  Y  +   +  +G
Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRESSPERQAELKDYTFELLMELYDNEEQYTEDLYDE--LG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++++ AN+    +G E LF       NP    S   +  +  +FF    + Y
Sbjct: 251 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 309

Query: 344 QQG 346
             G
Sbjct: 310 VMG 312


>gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
          Length = 320

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 109/272 (40%), Gaps = 37/272 (13%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W++ +       + +   L    + ++ V    ++A       
Sbjct: 29  SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DSLT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P     L   +F EAVH+ ++  I ++L   +            + A   W+        
Sbjct: 86  PHEEAVLSNISFMEAVHARSYSSIFSTLCHSK-----------EVDAAFAWSESCEPLQR 134

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G   AD+   +   +  V  E   FY+GF   +      K+   A+  + I+RD
Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMHFSSRGKLTNTADLIRLIIRD 192

Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           E++H  +       G+++++  K E       E +  +  +L +    E+AY+ E   + 
Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245

Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             F  ++A  C     + AN+    +G E LF
Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALF 272


>gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4]
 gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4]
          Length = 305

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 119/307 (38%), Gaps = 40/307 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P++V +  D+   KS N     +R   K    F   +ESLV  NI   I +   + 
Sbjct: 26  NRWFPSQVSLHGDVNHLKSLNV---QDREFYKFLFTFLGMAESLVNFNIE-DIIKQFESH 81

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKANWALQYTQ 167
           +   Y   Q   E +H+  ++ I+      D  E++   + +    ++  K +W     +
Sbjct: 82  DMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRALIRKLDWLHSRIK 141

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           ++S+ +             + + +F +V EG++F + F  I  L       G+     YI
Sbjct: 142 SVSNKA-------------EKVLLFLLV-EGIFFVSSFYSIGLLRVRGMFNGVCLANDYI 187

Query: 228 MRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            RDE LH      + N +    + PH LW     +++  + HE  L++          G 
Sbjct: 188 SRDELLHTRAAALLYNTMVSGADKPHMLWVHNLFKEAVEVEHEFILVK--------SSGV 239

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
             +N      +++  A+R    I L          + P  +   V    K  NFFE   +
Sbjct: 240 SAVNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPLVYTGCV----KNVNFFERDNS 295

Query: 342 EYQQGAE 348
           +Y    +
Sbjct: 296 DYTSSIK 302


>gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2]
 gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2]
          Length = 339

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 35/302 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D    +   GLTD+E    +    F ++++ LV  N+   +       
Sbjct: 55  NRWLESELVFAGD---EEDVAGLTDEELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 110

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  ++ +    Y  R +  P+I  K +W     Q
Sbjct: 111 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQ 170

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S              + + F+  ++ EG++F   FA I  +   N +    +    I
Sbjct: 171 ACES--------------VPEKFILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLI 216

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K   ++   +  EA  +EI +     P     L
Sbjct: 217 SRDEAVHTTASCYIYNNYLAGH----RKPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 272

Query: 288 N---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL---KKEKNFFETRVT 341
           +     + E Y++F A+R    I ++PLF     P P  S  ++L   +K  NFFE R T
Sbjct: 273 DAAALAAIENYVRFSADRLLALIEMKPLFG---APAPAPSFPLNLMSTEKHTNFFERRST 329

Query: 342 EY 343
            Y
Sbjct: 330 AY 331


>gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
 gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
          Length = 334

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 121/303 (39%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W   N LT+ E+ +  R        +++      +++    +
Sbjct: 42  TGNFWLPEKVPVSNDIPSW---NTLTEYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L   +   E F    E   +  KA   + Y +
Sbjct: 99  TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENDQLQRKAQIVMDYYR 158

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 159 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 203

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + G      ++++      +E +  +  +L E    E  Y      +  VG
Sbjct: 204 IRDEAVHGYYIGYKYQRGLEVQTAER-RQELKDYTFELLFELYDNESDYTEALYDE--VG 260

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++++ AN+    +G E +F   E   NP    +   +  +  +FF    + Y
Sbjct: 261 LTE-DVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSALSPNADENHDFFSGSGSSY 319

Query: 344 QQG 346
             G
Sbjct: 320 VIG 322


>gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2]
 gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2]
 gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine
           herpesvirus 2]
          Length = 305

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 118/321 (36%), Gaps = 47/321 (14%)

Query: 44  EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +KYL  C+             N W P ++ +  D+   K    L++ E    K    F  
Sbjct: 5   KKYLYVCDHRGFFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLG 61

Query: 91  SSESLVANNI---VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
            +E+LV  NI   V     H    + + Y   Q   E VH   +  I+  L         
Sbjct: 62  MAETLVNFNIDELVAGFEIH----DVKHYYCEQMAMECVHGKVYFNILNML--------- 108

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +    A A   L+         +  G     +   + + +FY++ EG++F + F  
Sbjct: 109 FKNNIAETRAFAESVLEDEPLRKKLQWLEGKIKTAESAAEKVLIFYLI-EGIFFISSFYC 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHLWTKEFQQKSRTM 264
           I  L     M G+     YI RDE LH      + N +   + +    W  +       +
Sbjct: 168 IGLLRVKGVMPGVCMANDYISRDELLHTRAAALLYNTVIPQEGKPSEAWIID-------L 220

Query: 265 LHEATLLEIAYAH-ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
             EA  +E  +   ++   GFV  N     ++++  A+R  + IGL   FK +E P    
Sbjct: 221 FKEAVSIEDEFIRAKSGEVGFV--NVADIRRFLEATADRLLNSIGLPVHFK-SEPPKSCP 277

Query: 324 SEVIDLKKEKNFFETRVTEYQ 344
                  K  +FFE   TEY 
Sbjct: 278 LTYTGCIKNVSFFERESTEYS 298


>gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum R]
 gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 334

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 27/272 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W + N +     + +   L    + +  V     +++     
Sbjct: 42  TGNFWLPEKVPVSNDIKSWGTLNDVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
           +      L   AF E+VH+ ++  I  +L     E+ + +R   E  ++  KA   L Y 
Sbjct: 99  SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   +  V+ E   FY+GF   +     +K+   A+  + 
Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I+RDE++H  + G      +  E P    +E ++ +  +L++    E  Y+ +      +
Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDD--L 259

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           G      ++++++ AN+  + +G E LF   E
Sbjct: 260 GW-TEDVKRFLRYNANKALNNLGYEGLFPADE 290


>gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 323

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 31/272 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P +VP+ +D+  W   N LT  E+ +  R        +++        +      
Sbjct: 32  SNFWLPEKVPLSNDIPSW---NTLTAAEKQLTIRVFTGLTLLDTIQNTVGAPCLMPDAQT 88

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168
           P     L   +F EAVH+ ++  I ++L   +D  + +    E  ++  KA   L Y   
Sbjct: 89  PHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYRWSEENNALQNKAKIILSYY-- 146

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                        D   L+   +  +  E   FY+GF   +      K+   A+  + I+
Sbjct: 147 ------------CDSHPLKKK-IASIFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLII 193

Query: 229 RDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           RDE++H  + I    Q  +    EN     KE +  S ++L +    E+ Y  E      
Sbjct: 194 RDEAIH-GYYIGYKFQKSLAQYDENTQ---KEIKDFSFSLLFDLYENEVKYTQELYDT-- 247

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           VG  +   ++++ + AN+    +G E LF  T
Sbjct: 248 VGW-SEDVKKFLHYNANKALMNLGYEALFPDT 278


>gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 202

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R  
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRRG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 337

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 34/278 (12%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W+S  GL   E  +     G     ++L + + +
Sbjct: 27  TWEK---LTEQFWLDTRIPISNDMKDWRSL-GLV--EHKLYDHVFGGLTMLDTLQSQDGM 80

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159
            ++      P  R  L    F E+VH+ ++  I  +L    +  E+F+         A  
Sbjct: 81  ASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDW--------ASK 132

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +    +   D D    +   VF    E   FY+GF   L     NKM  
Sbjct: 133 NEQLQY----KANKINSVYHDPDPLKRKIASVF---LETFLFYSGFYTPLYFVGHNKMAN 185

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYA 276
           +AE  + I+RDES+H   G  +  + ++    L     KE    +  +L++    E  Y 
Sbjct: 186 VAEIIKLIIRDESVH---GTYIGYKFQLAYKELTEQEQKELNSWAYDLLYDLYDNEEKYT 242

Query: 277 HETMPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
           H+   +    ++       ++++  N+    +GLEP+F
Sbjct: 243 HQLYDE----IDWFDDVMIFLRYNGNKALMNLGLEPMF 276


>gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
 gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
          Length = 305

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 116/302 (38%), Gaps = 30/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W P+++ +  D+A  +S   L   +    K    F A +E LV  NI  A+     + 
Sbjct: 26  NRWFPSQISLTSDVACLQS---LNPRDLEFYKFLFSFLAMAEKLVNFNI-QALVADFHSH 81

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREV---PSITAKANWALQYTQ 167
           +   Y   Q   E +H   +  I+     +  GE+    RE+    ++ AK +W      
Sbjct: 82  DLEHYYTEQEAMENIHGKVYANILNMFFKNNVGEMQKYAREIVGDEALAAKLHW------ 135

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                    G     +   + + VF ++ EG++F + F  I +L     M G+     YI
Sbjct: 136 -------LHGRVSEAKTRAEKVLVFLLI-EGIFFISSFYSIATLRVRGLMNGVCMANDYI 187

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE +H      + N +  +      K   +    +  EA  +E  +      +G   +
Sbjct: 188 SRDEWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFIL-AKGRGVSHV 242

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-IDLKKEKNFFETRVTEYQQG 346
           N     ++++  A+R    I + P+  Y   P P    V     K  NFFE   ++Y   
Sbjct: 243 NVADINRFLEATADRILKSINVGPV--YGTQPPPNCPLVYTGCLKNVNFFERESSDYTTA 300

Query: 347 AE 348
            +
Sbjct: 301 VD 302


>gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR
           15-3]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L++ +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      A++   +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -----------ANEPLKKK--IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q+     H   K E +  +  +L +   +E  Y  +      +GL 
Sbjct: 196 DEAVH-GYYIGYKFQLGFAKLHEAKKQEIKDFAFNILFDLYNIECKYTEDLYDA--IGLT 252

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               + ++ + AN+    +G E LF
Sbjct: 253 -EDVKVFLHYNANKALMNLGFEALF 276


>gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group]
 gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group]
          Length = 162

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV +YQ+ 
Sbjct: 83  MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140

Query: 347 A 347
           +
Sbjct: 141 S 141


>gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 319

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 36/195 (18%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W++ N    +++L I+   G          A + SL+A+ I 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159
                    P     L   +F EAVH+ ++  I ++L    D    +    E P +  KA
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSEENPQLQRKA 135

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              +  T  +S                    +  V  E   FY+GF   +      K+  
Sbjct: 136 Q--IMMTHYVSDEPLKKK-------------IASVFLESFLFYSGFWLPMYFSSRGKLTN 180

Query: 220 IAEQYQYIMRDESLH 234
            A+  + I+RDE++H
Sbjct: 181 TADLIRLIIRDEAVH 195


>gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 319

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I   +QI ++    +  +E +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKHQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 28/303 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L + E+ M  R        +++      +++     
Sbjct: 32  TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L    +  E F    E  ++  KA   L Y  
Sbjct: 89  TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARIILDY-- 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  D E  +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193

Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q+ + E+      E +  +  +L E    E  Y  +   +  +G
Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRESSPERQAELKDYTFELLMELYDNEEQYTEDLYDE--LG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           L     ++++++ AN+    +G E LF       NP    S   +  +  +FF    + Y
Sbjct: 251 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 309

Query: 344 QQG 346
             G
Sbjct: 310 VMG 312


>gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp.
           TM1040]
 gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Ruegeria sp. TM1040]
          Length = 338

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 20/263 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT DE+ +  R        +++        + +    P
Sbjct: 47  NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 103

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                L   +F EAVH+ ++  + ++L            +   +     W+ +     + 
Sbjct: 104 HEEAVLSNISFMEAVHARSYSSVFSTLC-----------QTTEVDEAFRWSAENEHLQAK 152

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                G  DA    L+   +  V  E   FY+GF   +      ++   A+  + I+RDE
Sbjct: 153 SRLILGEYDATASPLRKK-IASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDE 211

Query: 232 SLHLNFGIDVINQIKIENP-HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ++H  + I    Q  +E       KE +  +  +L +   +E  Y  E +  G +GL   
Sbjct: 212 AIH-GYYIGYKFQRGLERASEAERKELKDFAFGLLFDLYDIEARYT-EQLYDG-LGLTE- 267

Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313
             + ++ + AN+    +G E LF
Sbjct: 268 DVKNFLHYNANKALQNLGFEALF 290


>gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 324

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 27/266 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +      P
Sbjct: 34  NFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAVGLMEDAVTP 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ   TL  
Sbjct: 91  HEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSTLII 144

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +  G     +       V  V  E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 145 EQYRCGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDE 197

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGL 287
           ++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A   E +  G VGL
Sbjct: 198 AVH-GYYIGYKFQRGLER---LSEERKQEIKDFAFD-LLLELYDNEARYTEALYDG-VGL 251

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++++ + AN+    +G E LF
Sbjct: 252 T-EDVKKFLHYNANKALMNLGYEALF 276


>gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 336

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 120/322 (37%), Gaps = 35/322 (10%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M     ++P++ G    N D  R + A  D N +   K    W++      N W+P +VP
Sbjct: 1   MKKTNAITPVRWGTNGNNHD--RPI-AAIDWNTIPDDKDQEVWDR---LTGNFWLPEKVP 54

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W + N L     + +   L    + +  V     +++      P         
Sbjct: 55  LSNDIKSWGTLNELEQRTTMRVFTGLTMLDTIQGTVG---AVSLIPDALTPHEEAVYTNI 111

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF E+VH+ ++  I  +L              P I     W+ +               +
Sbjct: 112 AFMESVHARSYSSIFMTLS-----------STPEINDAFRWSEENENLQDKARIVLDYYE 160

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D  F +   V   + E   FY+GF   +      K+   A+  + I+RDE++H  + I 
Sbjct: 161 GDNPFKRK--VASTLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVH-GYYIG 217

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEAT--LLEIAYAHET--MPKGFVGLN-APSCEQY 295
              Q   E          Q  R  L E T  LL   Y +ET      +  L      +++
Sbjct: 218 YKYQRGQE-------ALTQSERDGLKEYTFDLLYELYDNETQYTEDLYDELGWTEDVKRF 270

Query: 296 MQFIANRRCHQIGLEPLFKYTE 317
           +++ AN+  + +G E LF   E
Sbjct: 271 LRYNANKALNNLGYEALFPADE 292


>gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 320

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 110/268 (41%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W + N       + +   L    + ++ +    ++       
Sbjct: 28  TSNFWLPEKVPLSNDIPSWGTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L   E+ + YR          W+ + T   
Sbjct: 85  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYR----------WSEENTALQ 133

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      +D   ++   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 134 KKSDIILSHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 191

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGFVG 286
           DE++H  + G      +   +P       QQ+ +   ++  LL+  Y +E +   + + G
Sbjct: 192 DEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQELYDG 244

Query: 287 LN-APSCEQYMQFIANRRCHQIGLEPLF 313
           +      ++++ + AN+    +G E LF
Sbjct: 245 VGWTEDVKKFLHYNANKALMNLGYEALF 272


>gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 322

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 106/270 (39%), Gaps = 28/270 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ +E  +  D+A WK    LTDDE+      L      ++  A++ +  I  H  +   
Sbjct: 25  WVESEFKVSKDIASWKE---LTDDEKFTFNHALAGLTGLDTHQADDGMPLIGLHTQDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTL 169
           +         E +H+ ++ +I T+L L   E    L N     P +  K+   +     L
Sbjct: 82  KAVYSFMGMMEQIHAKSYSHIFTTL-LPSAETNDLLDNWVVNEPHLKFKSEKIVSRYHKL 140

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                T      DQ   +   V  V  E   FY+GF   L L    +M    E  + I+ 
Sbjct: 141 WGKEATI----YDQYMAR---VASVFLETFLFYSGFYYPLYLAGQGRMTTSGEIIRKILL 193

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE----TMPKGF 284
           DES+H  F G+D    ++ E          +K R       LL+  YA+E     M    
Sbjct: 194 DESIHGVFTGLDA-QSLRNEMTE------DEKIRADKEMYDLLKELYANEESYTKMLYDR 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           VGL       Y+Q+  N+    +G EP F+
Sbjct: 247 VGL-TEDVLNYVQYNGNKALANLGFEPYFE 275


>gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Rana esculenta virus]
          Length = 202

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +L+  R+ 
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum]
 gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 334

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 29/273 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W + N +     + +   L    + +  V     +++     
Sbjct: 42  TGNFWLPEKVPVSNDIKSWGTLNEVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
           +      L   AF E+VH+ ++  I  +L     E+ + +R   E  ++  KA   L Y 
Sbjct: 99  SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +              D    +   +  V+ E   FY+GF   +     +K+   A+  + 
Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202

Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GF 284
           I+RDE++H  + G      +  E P    +E ++ +  +L++    E  Y+ +     G+
Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDDLGW 261

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                   ++++++ AN+  + +G E LF   E
Sbjct: 262 T----EDVKRFLRYNANKALNNLGYEGLFPADE 290


>gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 305

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSA--AEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAI-- 83

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 84  -------TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I   +QI ++    +  +E +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKHQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata
           obscuriglobus UQM 2246]
          Length = 70

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           GL+      Y ++ A+RR   +G+ P+F  T+NPF +M ++ D+++  NFFE RV+ YQ 
Sbjct: 3   GLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFM-DLQDVQELTNFFERRVSAYQL 60

Query: 346 G 346
           G
Sbjct: 61  G 61


>gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
 gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
          Length = 324

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 25/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L++ +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      A++   +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -----------ANEPLKKK--IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q+   N      +E +  +  ML +   +E  Y         +GL 
Sbjct: 196 DEAVH-GYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFDLYNIECKYTENLYDS--IGL- 251

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               + ++ + AN+    +G E LF
Sbjct: 252 TEDVKVFLHYNANKALMNLGFEALF 276


>gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 330

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    ++DDE  +           +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L                I A  +W+ +     
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLC-----------STKEIDAAFDWSERNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDSPLKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++ ++  K E       E ++ +  +L+E    E+ Y      +
Sbjct: 202 DEAVHGYYIGYKYQRGLERVSDAKRE-------EMREYTYNLLNELYDNEVEYTESLYER 254

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             VGL     E+++++  N+    +G   LF
Sbjct: 255 --VGL-TDDVEKFLRYNGNKALMNLGYPALF 282


>gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni
           PSU-1]
 gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
 gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Oenococcus oeni PSU-1]
 gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W+S   L   E  +     G     ++L + + +
Sbjct: 27  TWEK---LTEQFWLDTRIPISNDMKDWRS---LGPVEHKLYDHVFGGLTMLDTLQSQDGM 80

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159
            ++      P  R  L    F E+VH+ ++  I  +L    +  E+F+         A  
Sbjct: 81  ASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDW--------ASK 132

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +    +   D D    +   VF    E   FY+GF   L     NKM  
Sbjct: 133 NEQLQY----KANKINSVYHDPDPLKRKIASVF---LETFLFYSGFYTPLYFVGHNKMAN 185

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 186 VAEIIKLIIRDESVH 200


>gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 320

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 35/272 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W + N       + +   L    + ++ +    ++       
Sbjct: 28  TSNFWLPEKVPLSNDIPSWSTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L   E+ + YR          W+ + T   
Sbjct: 85  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYR----------WSEENTALQ 133

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      +D   ++   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 134 KKSDIILSHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 191

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G+  ++  +    H   K F   +  +L +    E+ Y  E    
Sbjct: 192 DEAVHGYYIGYKFQRGLAKVDSAR----HQQVKNF---AYDLLQDLYDNEVLYTQEL--- 241

Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
            + G+      ++++ + AN+    +G E LF
Sbjct: 242 -YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272


>gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT +E+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAMTP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++ ++  +        +E +  +  +L +    E+ Y  +   K
Sbjct: 195 DEAVHGYYIGYKFQKGLERVDNSR-------RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             VG      ++++ + AN+    +G E LF
Sbjct: 248 --VGWTE-DVKKFLHYNANKALMNLGYEALF 275


>gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 319

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 45/287 (15%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W++ N    +++L I+   G          A + +L+A+++ 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNVAGAPALMADSLT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                    P     L   +F EAVH+ ++  I ++L            +   + A   W
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAW 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + + T              +D+   +   +  V  E   FY+GF   +      K+   A
Sbjct: 125 SEENTPLQRKAQIVLTHYASDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +  + I+RDE++H  + I    Q  +E+      +E +  +  +L E    E  Y  E  
Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQKGLEHISESAREELKNFAFDLLMELYDNEARYTEELY 241

Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            + G+V       + ++ + AN+    +G E LF       P M+EV
Sbjct: 242 AETGWVD----DVKAFLCYNANKALMNLGYEALFP------PEMAEV 278


>gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 319

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 113/297 (38%), Gaps = 23/297 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ +EV    D+  +KS   L + E   +KR L   A  E  V       +Y     PE 
Sbjct: 30  WVHSEVEFTADIQDFKSNLSLIEKE--AVKRALLGIAQVEVAV-KTFWGDLYDIFPKPEF 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  A  E  HS  +  ++  LG +    F    EVP    +     +Y        
Sbjct: 87  NGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLLEVPIFKERNGVLKEY-------- 136

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232
                ++A    ++ +  F ++ E    ++ FA ILS  R    M  +A    +   DE 
Sbjct: 137 LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFKGYMKNVANIIAWTSIDEQ 192

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPS 291
           +H N GI ++  I  ENP   TK  ++++   + E  LLE         +G +       
Sbjct: 193 VHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYILLEDKMLDWIFEEGELDFFTKKD 251

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              YM++  +    Q+ L   F  T     P  W  E + + +  +FF  R T Y +
Sbjct: 252 LANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEEEVFVNELDDFFAKRPTAYTK 308


>gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 330

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 37/275 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT +E+ +  R        +++       A+ +    P
Sbjct: 40  NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 96

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+    
Sbjct: 97  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 155

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 156 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 201

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++ ++  +        +E +  +  +L +    E+ Y  +   K
Sbjct: 202 DEAVHGYYIGYKFQQGLEKVDNAR-------RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 254

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             VG      ++++ + AN+    +G E LF  ++
Sbjct: 255 --VGW-TEDVKKFLHYNANKALMNLGYEALFPASQ 286


>gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 27/266 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT +E+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + G      + K++N     +E +  +  +L +    E+ Y  +   K  VG 
Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDNNR--RQEIKNFAFDLLQDLYDNEVRYTEDLYDK--VGW 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++++ + AN+    +G E LF
Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALF 275


>gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           henselae str. Houston-1]
 gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str.
           Houston-1]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 37/271 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLMADAITE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L+  +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                  G     ++    L       E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -------GNDPLKKKIASTL------LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H          G   +++ K        KE +  +  +L +   +E  Y  +    
Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDETK-------KKEVKDFAFNLLFDLYNIECKYTEDLYDA 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +GL     + ++ + AN+    +G E LF
Sbjct: 249 --LGL-TEDVKIFLHYNANKALMNLGFEALF 276


>gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus
           radiotolerans SRS30216]
 gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans
           SRS30216]
          Length = 323

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 110/273 (40%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   L   ER +  R        +++      +++     
Sbjct: 31  TSNFWLPEKVPLSNDVQSWQN---LGAQERTLTLRVFTGLTLLDTIQGTVGAVSLIPDAL 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L       E F    +  ++  KA+  L+Y  
Sbjct: 88  TPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFAWSEDNEALQRKASIVLEYYH 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      ++   A+  + I
Sbjct: 148 -------------GDDPLKRK--VASTLLESFLFYSGFFLPMHFSSRAQLTNTADLVRLI 192

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G+++++Q K +       E +  +  +L+E    E  Y  +  
Sbjct: 193 IRDEAVHGYYIGYKFQRGLELVDQAKRD-------EIKDYAFELLYELYDNECKYTADLY 245

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               VGL     + ++ + AN+    +G E +F
Sbjct: 246 DG--VGL-TEDVKTFLHYNANKALMNLGYEGMF 275


>gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
 gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
          Length = 323

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 126/307 (41%), Gaps = 40/307 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT +E+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    +D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 ---------EDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++     K++N     +E +  +  +L +    E+ Y  +   K
Sbjct: 195 DEAVHGYYIGYKFQKGLE-----KVDNNR--RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             VG      + ++ + AN+    +G E LF   +   NP    +   +  +  +FF   
Sbjct: 248 --VGW-TEDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSPNADENHDFFSGS 304

Query: 340 VTEYQQG 346
            + Y  G
Sbjct: 305 GSSYVIG 311


>gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 330

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +  R        +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  I       + + Q  +  +L+E    E+ Y      +  VGL 
Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               E+++++  N+    +G   LF       NP    S   +  +  +FF    + Y  
Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVM 317

Query: 346 G 346
           G
Sbjct: 318 G 318


>gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 329

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +      IV     H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVDGHQR 86

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L      E AVH+ ++  I  +L   E   E+F           K N  LQ    + 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEW--------VKQNKYLQKKAQII 138

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
              +    KD D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 139 VGLYKAIQKD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +       E +  +  +L+E    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +P F+  E+  P +   ++ K K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli
           CIAT 652]
 gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CIAT 652]
          Length = 324

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +     
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAM 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164
            P     L   +F EAVH+ ++  I ++L              P I     W+     LQ
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------STPDIDDAYRWSEENEFLQ 137

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
               L    +  G+ DA ++ +  +F+     E   FY+GF   +      K+   A+  
Sbjct: 138 RKSALIMEQY--GSGDALKKKVASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMI 190

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETM 280
           + I+RDE++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A   E +
Sbjct: 191 RLIIRDEAVH-GYYIGYKFQRGLER---LSEERRQQIKDFAFD-LLLELYDNEARYTEAL 245

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             G +GL     ++++ + AN+    +G E LF
Sbjct: 246 YDG-LGLT-EDVKKFLHYNANKALMNLGYEALF 276


>gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 330

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +  R        +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  I       + + Q  +  +L+E    E+ Y      +  VGL 
Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               E+++++  N+    +G   LF       NP    S   +  +  +FF    + Y  
Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVM 317

Query: 346 G 346
           G
Sbjct: 318 G 318


>gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
 gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
          Length = 323

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 24/300 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
               W+  E+P+ DD   W +   L  +ER   ++ L      ++L     +  + + + 
Sbjct: 22  VRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLLVQTME 78

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           + + +  L      E +H+ ++  I ++L             +P I     WA  +    
Sbjct: 79  SAQVKAVLSFMGAMEQMHAKSYSLIFSTLS-----------PLPRIETLFRWAEGHPLLQ 127

Query: 170 SSPSFTTGTKD---ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +  +   G      A    L       V+ E   FY+GF   L L    ++V   E    
Sbjct: 128 AKVARVEGRYRGVFAGDAGLYLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGEIISL 187

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFV 285
           I+RDE++H  +   +  Q+    P       +   R  L + + LE AY  E   P G V
Sbjct: 188 ILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYAPIGRV 247

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEY 343
                   ++ ++ A++    +G  P F    E   P +   I L+ K  +FF T+   Y
Sbjct: 248 ----EEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPVVLAGISLRTKNHDFFSTKGNGY 303


>gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 319

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 329

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 29/273 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  WK+   LT+ E+    R        +++      +++     
Sbjct: 37  TGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGLTLLDTIQGTVGAVSLLPDAV 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I  +L       + F    E  ++  KA   + Y Q
Sbjct: 94  TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKIVMSYYQ 153

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 154 -------------GDNPLKKK--VASTLLESFLFYSGFFLPMHFSSRAKLTNTADIIRLI 198

Query: 228 MRDESLH---LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           +RDE++H   + +      Q K+  P    +E +  +  +L++    EI Y  +   +  
Sbjct: 199 IRDEAVHGYYIGYKFQQGYQ-KLSEPE--QEEMKGYAFDLLYDLYENEIDYTEDLYDE-- 253

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +G      ++++++ AN+  + +G E LF   E
Sbjct: 254 LGWTE-DVKRFLRYNANKALNNLGFEGLFPADE 285


>gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM
           639]
          Length = 314

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 32/209 (15%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P ++    D   WK    L+ DE+  +   +  F + E  VA +I   I   ++    
Sbjct: 43  WDPAKIDFSKDKEDWKK---LSKDEKNYLLNIVSLFMAGEEAVAVDITPLISTMINEGRV 99

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGL-DEGELFN----------MYREVPSITAKAN 160
               YL + AFEEA H+  F+    SL + D+  +F            Y E+PS+     
Sbjct: 100 EDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNPWYQKIFYEELPSVM---- 155

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W L+   +  + +    T         +L+V  V  E    Y  F  I +    N M G+
Sbjct: 156 WKLRVDPSPENLAVAVTT--------YNLYVEGVAAESG--YKTFKHIFN--SLNIMPGL 203

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           ++    I  DES H+ +G  +I ++ +EN
Sbjct: 204 SKTVNLIATDESRHIAYGTYLITRLIVEN 232


>gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 319

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 319

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   + L    K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYLSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I   +Q   E   L  + E ++ +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKHQKNQEKISLTQREELKRFAFDLLLELYDNELQYTDELYAETTW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
 gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
          Length = 323

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 22/187 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLS 109
           +N W+P ++P+ +D   W +    TD+++L I+   G   +    + N +    +     
Sbjct: 32  SNFWLPEKIPLSNDTVSWNTLK--TDEQQLTIRVFTGL--TLLDTIQNTVGAPCLMEDAQ 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   +F EAVH+ ++  I ++L   +D  E +    E  ++  KA   L Y  
Sbjct: 88  TPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSEENTALQNKAKIILSYY- 146

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D   L+   V  V  E   FY+GF   +      K+   A+  + I
Sbjct: 147 -------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLI 192

Query: 228 MRDESLH 234
           +RDE++H
Sbjct: 193 IRDEAIH 199


>gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
 gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 38/310 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D A ++    L   ++ +   NL + +  +S+        +   +S+P  
Sbjct: 36  WRPEEVNLMTDRAQFEK---LPVGQQNVFLDNLKYQSLLDSIQGRAPAAVLSALISDPSL 92

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------------- 159
             +     F E +HS ++ +I+ +L  D  ++F+      +I  +A              
Sbjct: 93  DTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMKRAETIGHYYDDVILKT 152

Query: 160 ----NWALQYTQTLSSPS------FTTGTKDADQEFLQDLFVFYVVFEGM---WFYTGFA 206
               N   +Y ++L S        +     DA +E ++ L++   V  G+    FY  FA
Sbjct: 153 RLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCLHVINGLEAIRFYVSFA 212

Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KEFQQKS 261
              +  +  + M G ++  ++I RDE LHL     +I Q+++  +   W    +E +Q++
Sbjct: 213 CTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGTDGEEWVQIARECEQEA 272

Query: 262 RTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318
             +  E    E  +A H     G  GL+      ++ ++   R    GL  P+      +
Sbjct: 273 VDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRMRSCGLPCPITDAPVRH 332

Query: 319 PFPWMSEVID 328
           P PW+ E ++
Sbjct: 333 PIPWIREYLN 342


>gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Short-finned eel ranavirus]
          Length = 202

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   +  
Sbjct: 32  PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + +   +
Sbjct: 91  VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           T K ++ ++     + P        A            V+ EG+  +  F  +++  R  
Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLFRA------------VLNEGVSLFAAFVMLMTFQRRG 196

Query: 216 KMVGIA 221
           KM G+ 
Sbjct: 197 KMKGMG 202


>gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 318

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 31/280 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            ++ + +        L    F E+VH+ ++  I ++L   +   E+F+       +  KA
Sbjct: 75  ASLRKDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKA 134

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    L          D  ++ +  +F+     E   FY+GF   L     NK+  
Sbjct: 135 ---------LKIRDIYANEPDPLKKKVASVFL-----ETFLFYSGFYTPLWYLGHNKIPN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +AE  + I+RDES+H   G  +  + +I    L  KE Q+  +  +++   L   Y +E 
Sbjct: 181 VAEIIKLILRDESVH---GTYIGYKFQIGYNQL-PKEKQEDMKNWIYD--FLYKLYGNEE 234

Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316
                +       E  + FI   AN+    +G +PLF  T
Sbjct: 235 KYTHILYDQTGWTEDVLTFIRYNANKALMNLGQDPLFPDT 274


>gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
 gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct]
 gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +      IV     H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVDGHQR 86

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   E+F   ++   +  KA   +   + + 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQ 146

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   KD D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 147 --------KD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +P F+  E+  P +   ++ K K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens FZB42]
 gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +      IV     H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVEGHQR 86

Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L   A  E AVH+ ++  I  +L   E   E+F   ++   +  KA   +   + + 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQ 146

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   KD D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 147 --------KD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G +P F+  E+  P +   ++ K K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 363

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 116/292 (39%), Gaps = 56/292 (19%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+  E+ M+ +  G     +++ +    
Sbjct: 22  TWEKL---TEQFWLDTRIPVSNDLDDWRR---LSKAEQDMVGKVFGGLTLLDTVQSEQGA 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
           + +         R  L    F E+VH+ ++  I  +L        N   E+ +I      
Sbjct: 76  IVLLPDARTSHERSVLSNIHFMESVHAKSYSTIFITL--------NTNAEIDAIFEWTDT 127

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218
           +  +Q+     +  + TGT       LQ      V+ E   FY+GF A +  LG  NK+ 
Sbjct: 128 HELIQFKSDKINRIYQTGTP------LQKKAA-SVLLESFLFYSGFYAPLWYLGN-NKLP 179

Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF-------QQKSRTM 264
            +AE  + I+RDES+H          G + +++   E    W           ++K  + 
Sbjct: 180 NVAEIIKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFELYSNEEKYTSY 239

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +++    E+ +  E                ++++ AN+    +G +PLF  T
Sbjct: 240 IYD----ELGWTEE-------------VNTFVRYNANKALQNLGFDPLFADT 274


>gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
 gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
          Length = 326

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 19/264 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +DL  W++ +       + +   L    + ++++       +     
Sbjct: 34  TSNFWLPEKVPLSNDLPGWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAI 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L                + A   W+ +     
Sbjct: 91  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------NTQDVDAAYQWSEENGPLQ 139

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +          AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 140 NKARIILEHYRADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIR 197

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q       L  +E QQ +  +L      E+AY       G VG   
Sbjct: 198 DEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLALYENEVAYTEALY--GDVGW-V 254

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313
              + ++ + AN+    +G E LF
Sbjct: 255 DEVKTFLHYNANKALMNLGYEALF 278


>gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 27/308 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    + ++ N+L   K    W++      N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SATNWNRLEDEKDLEVWDR---LTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+ ++  I ++L   E            I A  +W+                 + D  + 
Sbjct: 112 HAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQKKAEIVLDYYEGDNPYK 160

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           +   V   + E   FY+GF   +      K+   A+  + I+RDE++H  + I    Q  
Sbjct: 161 RK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVH-GYYIGYKYQKG 217

Query: 247 IENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           I       + + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+   
Sbjct: 218 IAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL-TDDVEKFLRYNGNKALM 274

Query: 306 QIGLEPLF 313
            +G   LF
Sbjct: 275 NLGYPALF 282


>gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +    N  +  +  H+   + 
Sbjct: 11  WLPEEIALNGDLLTWKYLGTKEQDTYMKVLAGLTLLDTEQ---GNTGMPIVAEHVEGHQR 67

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L      E AVH+ ++  I  +L   E   E+F   ++   +  KA+  +   + + 
Sbjct: 68  KAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHTVVGLYRAI- 126

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   K  D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 127 --------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSGEIVNLIIRD 178

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E+LH  +   +  +I  +   +  KE  + +  +L +    E+ Y  +      VGL   
Sbjct: 179 EALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLYDP--VGL-TH 235

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++++++ AN+  + +G +  F   E NP   ++ +    K  +FF  +   Y++  
Sbjct: 236 DVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQKGNSYRKAT 292


>gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CIAT 894]
          Length = 324

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 110/271 (40%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +     
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAI 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ N YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDNAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G     +       V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQYASGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++++ + +        +E +  +  +L E    E  Y      +
Sbjct: 196 DEAVHGYYIGYKFQRGLELLGEER-------RQELKDFAFDLLLELYDNEARYTEALYDR 248

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             VGL     ++++ + AN+    +G E LF
Sbjct: 249 --VGL-TEDVKEFLHYNANKALMNLGYEALF 276


>gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
          Length = 319

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYTWSEENASLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 324

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +    +
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAA 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G     +       V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQYRSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMVRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285
           DE++H  + I    Q  +E       E +Q+ +    E  LLE+    A   E +  G V
Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LGDERKQEIKDFAFE-LLLELYDNEAKYTEALYDG-V 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276


>gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis 157F]
 gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 330

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +  R        +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  I       + + Q  +  +L+E    E+ Y      +  VGL 
Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               E+++++  N+    +G   LF
Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALF 282


>gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 319

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                    P     L   +F EAVH+ ++  I ++L            +   + A   W
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + +                +D+   +   +  V  E   FY+GF   +      K+   A
Sbjct: 125 SEENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +  + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y     
Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALNLLMELYDNEIRYTEALY 241

Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            + G+V       + ++ + AN+    +G E LF
Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium
           ammoniagenes]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W   N +T  E+L   R        +++      +++   + 
Sbjct: 37  TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDVE 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 94  TMHEEGVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   + L    K+   A+  + I+R
Sbjct: 143 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DES+H  +       G+  +++ + E       E++  +  ++++    EI Y  +    
Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 253

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +G      ++++++ AN+  + +G E LF   E
Sbjct: 254 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 285


>gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
 gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 331

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 110/272 (40%), Gaps = 31/272 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W + N    +  + +   L    + +  V     +++    +  
Sbjct: 41  NFWLPEKVPVSNDIQSWATLNDAEKNATMRVFTGLTMLDTIQGTVG---AVSLIPEATTM 97

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                L   AF E+VH+ ++  I  +L       + F    E  ++  K    LQY +  
Sbjct: 98  HEEAVLTNIAFMESVHAKSYSQIFMTLASTREINDAFRWSEENENLQRKGEIILQYYK-- 155

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V+ E   FY+GF   +      K+   A+  + I+R
Sbjct: 156 -----------GDDPLKRK--IASVLLESFLFYSGFYLPMRWSSMGKLTNTADIIRLIIR 202

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DES+H  + I    Q  +EN    + E Q++ +  + E  L     E+ Y      +  +
Sbjct: 203 DESVH-GYYIGYKYQRALENE---SPERQEELKGFVVEQLLDLYDNEVEYTESIYDE--I 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           G      ++++++ AN+  + +G + LF   E
Sbjct: 257 GW-TEDVKRFLRYNANKAMNNLGYDGLFPVEE 287


>gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 324

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 119/301 (39%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P ++P+ +D+  W   N L D E+ +  R        +++       A+     
Sbjct: 32  TSNFWLPEKIPLSNDVPSW---NTLNDREQQLTIRVFTGLTLLDTIQGTIGAPALIEDAV 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         +F E+VH+ ++  I ++L     ++ + YR          W+ + T   
Sbjct: 89  TPHEEAVFTNISFMESVHARSYSSIFSTLCATR-DVDDAYR----------WSEENTHLQ 137

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +           D   ++   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 138 NKAELILERYRTDDPLMRK--VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 195

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      ++ E+     ++ +  +  +L +    E+ Y      +  VGL 
Sbjct: 196 DEAVHGYYIGYKFQRALEKESAER-QRQIKDTTYDLLLDLYDNEVQYTESLYDE--VGL- 251

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345
               + ++ + AN+    +G E LF   TE   P +   +    E+N  FF    + Y  
Sbjct: 252 TEDVKAFLHYNANKALMNLGYEALFPNATEAVDPAILAALSPGAEENHDFFSGSGSSYVI 311

Query: 346 G 346
           G
Sbjct: 312 G 312


>gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 339

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 120/284 (42%), Gaps = 38/284 (13%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L +D +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVSNDLDDWRN---LDEDHQWTVGHVFGGLTLLDTVQSEAGM 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+   +        L    F E+VH+ ++  I ++L        N   E+  I    NW
Sbjct: 82  TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTL--------NSPDEIDEI---FNW 130

Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +     LQ   T  +  +    +D  ++ + ++F+     E   FY+GF   L     N+
Sbjct: 131 SDTEEYLQNKATKIANMYLNPAEDPLKKKVANVFL-----ETFLFYSGFYTPLYYLGHNE 185

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLE 272
           +  +AE  + I+RDES+H   G  V  + ++   H  T++ QQ  +      L+E    E
Sbjct: 186 LNNVAEIIKLILRDESVH---GTYVGYKFQV-GLHERTEKQQQDMKDWMYNFLYELYDNE 241

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             Y H    K  +G        ++++ AN+    +G +PLF  T
Sbjct: 242 EKYTHLLYDK--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDT 282


>gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii]
          Length = 87

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W+ Y  A  + W   EV +  D+A W+S   L  DER  I   L FFA+S+ +V  N+V 
Sbjct: 4   WQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNENLVE 60

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHS 128
              + +   E R +   Q   E +HS
Sbjct: 61  RFSKEVQVTEARFFYGFQIAIENIHS 86


>gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp.
           Y-400-fl]
 gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl]
 gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111
           W P+ + +  D+  W+    L D+ER ++ R    F + E  V  ++ L + R ++    
Sbjct: 32  WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDL-LPLIRTIAREGR 87

Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    FEEA H+  F   I+ +   + +L   +         A++     + L 
Sbjct: 88  LEEELYLTTFLFEEAKHTDFFARFISEVARVDPDLSRYH--------TASYRALIYEALP 139

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMR 229
           +         +     +    + ++ EG+   TG+ A    L   + M G  E  + + +
Sbjct: 140 AALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQ 199

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMP 281
           DES H+ +G+ +++++   +P +W    ++ +  +L+   ++ EI   ++ MP
Sbjct: 200 DESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACYDPMP 252


>gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                    P     L   +F EAVH+ ++  I ++L            +   + A   W
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + +                +D+   +   +  V  E   FY+GF   +      K+   A
Sbjct: 125 SEENPTLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +  + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y     
Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALY 241

Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            + G+V       + ++ + AN+    +G E LF
Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 116/287 (40%), Gaps = 45/287 (15%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++ V      A+     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVG---APALMSDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  + ++L    D    +    E  S+  KA+  L+Y +
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSEESASLQRKADLVLEYYR 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                        AD+   +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 144 -------------ADEPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ ++  K E       E +  +  +L +    E++Y  E  
Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKVSAEKRE-------ELKGFALDLLMDLYDNELSYTEEL- 240

Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
              + G       + ++ + AN+    +G E LF       P M+EV
Sbjct: 241 ---YAGTGWEEDVKAFLCYNANKALMNLGYEALFP------PEMAEV 278


>gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101
            +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                    P     L   +F EAVH+ ++  I ++L            +   + A   W
Sbjct: 85  ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + +                +D+   +   +  V  E   FY+GF   +      K+   A
Sbjct: 125 SEENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +  + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y     
Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALY 241

Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            + G+V       + ++ + AN+    +G E LF
Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
 gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N + D+ER  I   L FFA+S+
Sbjct: 99  LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 156

Query: 94  SLVANNIVLAIYRHLSNPECRQY 116
            +V  N+V      +   E R +
Sbjct: 157 GIVNENLVERFSNEVQAAEARCF 179


>gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae]
          Length = 328

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 21/269 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W + N L     + +   L    + +  V    +L     L 
Sbjct: 36  TGNFWLPEKIPVSNDIKSWNTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVSLH 95

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                  +   AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 96  EEAVYTNI---AFMESVHAKSYSNIFMTLA-----------STPEINDAFRWSEENENLQ 141

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 142 KKAKIILSYYEGDDPLKRK--VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 199

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + G      ++ E P     E +  +  +L++    EI Y  +      +G  
Sbjct: 200 DEAVHGYYIGYKFQQALRKETPER-QAELKGYTFDLLYDLYDNEIQYTEDLYDD--LGW- 255

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               ++++++ AN+  + +G E LF   E
Sbjct: 256 TEDVKRFLRYNANKALNNLGYEALFPADE 284


>gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
 gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
          Length = 324

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 128/306 (41%), Gaps = 30/306 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDD-ERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           +++W+ TE   Q DL      + L D+ ER +++R L   A  E L        +Y    
Sbjct: 27  HSYWVHTEFSFQSDL----QDHALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFP 81

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            PE  +  L  A  E  H++ + +++  LGL+E   F    E       A+      Q L
Sbjct: 82  KPEIAEVGLTFAESEVRHANAYAHLLELLGLEEA--FGQALE------GASALRDRAQAL 133

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIM 228
                    KD  +E+   LF+F    E +  ++ F  +++L R  N+  GI+   +   
Sbjct: 134 GEALRRAQGKDL-REYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATS 192

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           ++E++H  FG++++  ++ E+P    + FQ+++  +        +  A E +        
Sbjct: 193 KEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQ-----GLFRAEEALLDWLFSAG 247

Query: 289 APSC---EQYMQFIANRRCHQI---GLEPLFKYTENPF---PWMSEVIDLKKEKNFFETR 339
            P+     + ++F+  R    +   GL P F   E       W +  +   KE +FF  R
Sbjct: 248 EPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTLELLADKEVDFFNKR 307

Query: 340 VTEYQQ 345
              Y +
Sbjct: 308 SVAYAR 313


>gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis ATCC 23457]
 gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC
           23457]
 gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M28]
 gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M5-90]
          Length = 329

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 37  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDAL 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 94  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281


>gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
 gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
          Length = 323

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 108/267 (40%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D++ W   N LT  E+ +  R        +++       ++     
Sbjct: 31  TTNFWLPEKIPLSNDISSW---NTLTAAEQQLTIRVFTGLTLLDTIQNTVGAPSLMSDAL 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P     L   +F EAVH+ ++  I ++L     ++ + YR   E  ++  KA   + Y 
Sbjct: 88  TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTSDVDDAYRWSEENSALQNKAKIIMSYY 146

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                          D   L+   V  V  E   FY+GF   +      K+   A+  + 
Sbjct: 147 --------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 191

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I+RDE++H  +      +  ++      KE +  + ++L +    E+ Y  E      VG
Sbjct: 192 IIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFDLYENEVNYTQELYDT--VG 249

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 ++++ + AN+    +G E LF
Sbjct: 250 W-TEDVKKFLHYNANKALMNLGYEALF 275


>gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYTWSEENASLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
 gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+R
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193


>gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus
           SAFR-032]
 gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus
           SAFR-032]
 gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 326

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK    L + ER    + L      ++   N  +  +  H+   + 
Sbjct: 30  WLPEEISLNGDLLTWKY---LGEKERDTYMKVLAGLTLLDTEQGNTGMPIVAEHVEGHQR 86

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L      E AVH+ ++  I  +L   E   E+F   ++   +  KA+  +   +++ 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADMIVSLYRSIQ 146

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   KD D   L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 147 --------KD-DPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +      KE    S  +L+E    E+ Y  +   +  V L + 
Sbjct: 198 EAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYDQ--VNL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G  P F+  E NP   ++ +    K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFAPYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. 16M]
 gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella
           melitensis bv. 1 str. 16M]
          Length = 335

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 43  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDAL 99

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 207 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 260

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 261 GL-TEDVKKFLHYNANKALMNLGYEALF 287


>gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
 gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
          Length = 323

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 115/272 (42%), Gaps = 27/272 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P ++P+ +D+  W +   LT +E+ +  R        +++       A+ +   
Sbjct: 31  TSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167
            P         +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+  
Sbjct: 88  TPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYH 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 148 N----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 192

Query: 228 MRDESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           +RDE++H  + G      + K++N      E +  +  +L +    E+ Y  +   K  V
Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDNAR--RLEIKNFAFDLLQDLYDNEVRYTEDLYDK--V 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           G      ++++ + AN+    +G E LF  ++
Sbjct: 249 GW-TEDVKKFLHYNANKALMNLGYEALFPISQ 279


>gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 329

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 37  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 94  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200

Query: 230 DESLH---LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           DE++H   + +      ++  E      K+F   +  +L E    E+ Y  E +  G VG
Sbjct: 201 DEAVHGYYIGYKFQRALEVLFEEKRQEIKDF---AFELLLELYDNEVRYT-EALYDG-VG 255

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L     ++++ + AN+    +G E LF
Sbjct: 256 LT-EDVKKFLHYNANKALMNLGYEALF 281


>gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           boydii Sb227]
 gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 3594-74]
          Length = 304

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++  +  
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPYAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y+ E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYSDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CNPAF512]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +     
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAM 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G     +       V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQYGSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285
           DE++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A   E +  G V
Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LSEERRQEIKDFAFD-LLLELYDNEARYTEALYDG-V 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276


>gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 339

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 119/281 (42%), Gaps = 32/281 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +D+  W++   L +D +  +    G     +++ +   +
Sbjct: 28  TWEK---LTEQFWLDTRIPVSNDMDDWRN---LDEDHQWTVGHVFGGLTLLDTVQSEAGL 81

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            A+   +        L    F E+VH+ ++  I ++L   +   E+FN         +  
Sbjct: 82  TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIDEIFNW--------SDT 133

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              LQ   T  +  +    +D  ++ + ++F+     E   FY+GF   L     N++  
Sbjct: 134 EEYLQNKATKIANMYLNPAEDPLKKKVANVFL-----ETFLFYSGFYTPLYYLGHNELNN 188

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAY 275
           +AE  + I+RDES+H  + I    Q+ +   H  T++ QQ  +      L+E    E  Y
Sbjct: 189 VAEIIKLILRDESVHGTY-IGYKFQVGL---HERTEKQQQDMKDWLYNFLYELYDNEEKY 244

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            H    K  +G        ++++ AN+    +G +PLF  T
Sbjct: 245 THLLYDK--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDT 282


>gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
 gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
          Length = 323

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 22/296 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY-REVPSITAKANWALQYTQTLS 170
           +      A  E +H+ ++ +I T+L    +   L +++  E P +  K++  +     L 
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDVWVLEEPHLKYKSDKIVANYHKLW 141

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
               +      DQ   +   V  V  E   F++GF   L L    KM    E  + I+ D
Sbjct: 142 GKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLD 194

Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES+H  F G+D    ++ E      ++  Q+   +L++  L E +Y    M    +G+  
Sbjct: 195 ESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDDLGI-T 250

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343
                Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   Y
Sbjct: 251 EDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304


>gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
 gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 28/285 (9%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+L+  K    W++      N W+P +VP+ +D+  W +   L + E+ M  R       
Sbjct: 17  NRLVDDKDLEVWDRL---TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTL 70

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149
            +++      +++      P         AF E+VH+ ++  I ++L    +  E F   
Sbjct: 71  LDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWS 130

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E  ++  KA   L Y             +  D E  +   V   + E   FY+GF   +
Sbjct: 131 EENENLQRKAKIILDY------------YRGDDPEKRK---VASTMLESFLFYSGFYAPM 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268
                 K+   A+  + I+RDE++H  + I    Q+ + E+      E +  +  +L E 
Sbjct: 176 YWSSHAKLTNTADLIRLIIRDEAVH-GYYIGYKYQLAVRESSPQRQAELKDYTFDLLMEL 234

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              E  Y  +   +  +GL     ++++++ AN+    +G E LF
Sbjct: 235 YDNEEQYTEDLYDE--LGLTE-DVKKFLRYNANKALMNLGYEALF 276


>gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2]
 gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2]
 gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
          Length = 337

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 53  NRWLETELVFVGD---EEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 108

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L    D+     + R +  P+I  K +W      
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDW------ 162

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      ++ D   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 163 ------LEARVRECDS--IPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 214

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285
            RDE++H            I N +L      + +R   +  EA  +EI +     P    
Sbjct: 215 SRDEAVH------TTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 268

Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
            L+     + E Y++F A+R    I ++PL+        +   ++   K  NFFE R T 
Sbjct: 269 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLSLMSTDKHTNFFECRSTS 328

Query: 343 Y 343
           Y
Sbjct: 329 Y 329


>gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli E128010]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K++  A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLINTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q K+E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKKLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           +   + ++ + AN+    +G EPLF
Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271


>gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 323

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSETEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165
           +      A  E +H+ ++ +I T+L         LDE  L     E P +  K++  +  
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              L     +      DQ   +   V  V  E   F++GF   L L    KM    E  +
Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+ DES+H  F G+D    ++ E      ++  Q+   +L++  L E +Y    M    
Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   
Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303

Query: 343 Y 343
           Y
Sbjct: 304 Y 304


>gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
 gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
          Length = 328

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 112/270 (41%), Gaps = 31/270 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L  +E+ +  R        +++      + +     
Sbjct: 36  TGNFWLPEKVPLSNDIQSWET---LKREEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAV 92

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164
            P     L   +F EAVH+ ++  I ++L L            P +     W+     LQ
Sbjct: 93  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 141

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
               L    +  G  D  ++ +  +F+     E   FY+GF   +      K+   A+  
Sbjct: 142 RKSVLILDQYHAG--DPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLI 194

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKG 283
           + I+RDE++H  + I    Q  +E  +   K E +  +  +L E    E+ Y  E +  G
Sbjct: 195 RLIIRDEAVH-GYYIGYKFQRGLERLNGEQKQEIKDFAFELLLELYDNEVRYT-EALYDG 252

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            VGL     ++++ + AN+    +G E LF
Sbjct: 253 -VGL-TEDVKKFLHYNANKALMNLGYEALF 280


>gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 193

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 12/178 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+R
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193


>gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 316

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/274 (19%), Positives = 111/274 (40%), Gaps = 31/274 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P ++P+ +D+  W++ + +     + +   L +  + +S +   ++    R   
Sbjct: 24  TSNFWLPEKIPLSNDVQSWRTLSEVEQATTMRVFAGLTYLDTIQSAIGAPVLA---RDAV 80

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P          F E+VH+ ++  I  +L       + F    E P++  K +  +    
Sbjct: 81  TPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFRWVEEDPNMIYKRDRVI---- 136

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                SF  G     ++         V+ E   FY+GF   L     +K+   A+  + I
Sbjct: 137 -----SFYEGDDPLRRKAAS------VILETFLFYSGFYLPLKWASHSKLTNTADIIRLI 185

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKG 283
           +RDE +H  + I    Q+ +     W+   QQ  +  + +  L     E AY      + 
Sbjct: 186 IRDEVVH-GYYIGYKYQVGMAG---WSSAEQQAIKDEVFDLLLDLYDNECAYTETLYDE- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +G      ++++++ AN+  + +G E +F   E
Sbjct: 241 -LGWTE-DVKRFLRYNANKALNNLGYEGVFPQDE 272


>gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
 gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 319

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DTL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF
           [Bifidobacterium bifidum PRL2010]
 gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain
           [Bifidobacterium bifidum PRL2010]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 37/273 (13%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    ++DDE  +           +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I ++L   +     F+       +  KA   L Y +
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYYE 154

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             S       +                + E   FY+GF   +      K+   A+  + I
Sbjct: 155 GDSPLKRKVAS---------------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLI 199

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ ++  K E       E ++ +  +L+E    E+ Y     
Sbjct: 200 IRDEAVHGYYIGYKYQRGLERVSDAKRE-------EMREYTYNLLNELYDNEVEYTESLY 252

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +  VGL     E+++++  N+    +G   LF
Sbjct: 253 ER--VGL-TDDVEKFLRYNGNKALMNLGYPALF 282


>gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
 gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
          Length = 323

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165
           +      A  E +H+ ++ +I T+L         LDE  L     E P +  K++  +  
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              L     +      DQ   +   V  V  E   F++GF   L L    KM    E  +
Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+ DES+H  F G+D    ++ E      ++  Q+   +L++  L E +Y    M    
Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   
Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303

Query: 343 Y 343
           Y
Sbjct: 304 Y 304


>gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           radiodurans R1]
 gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus
           radiodurans R1]
          Length = 354

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWA--WEK---------YLSACNNHWMPTEVPMQD 63
           + VN+   R+  +   +N  +P+    A  W +         Y    +  W P E+P+ +
Sbjct: 2   RGVNIQPDRVFGSPQPINNEVPMTPFSAANWSEPEDNFSATFYAKYTSQLWFPEEIPLTN 61

Query: 64  DLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR-QA 121
           D   WK+   L+D+ER   I  + G   ++   +   + +   R L +   R+  L+ Q 
Sbjct: 62  DALAWKT---LSDEERWTYIHASAGL--NALDTLQGEVGMPRLRDLVDGHIRKATLQFQG 116

Query: 122 FEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
             E +H+ ++  +  +     +E E+F   R  P +  K    +   Q +         +
Sbjct: 117 MMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHK----IAVIQGV--------YR 164

Query: 180 DADQEFLQDL-----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           D D   + DL      V   + E   FY+GF   L L    +MV   E +  I+ DE+LH
Sbjct: 165 DPD---VSDLGVWKKLVVSCMLETALFYSGFFYPLYLAGQGQMVSAGEIFNLIILDEALH 221


>gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2]
          Length = 337

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 53  NRWLETELVFVGD---EEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 108

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L    D+     + R +  P+I  K +W      
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDW------ 162

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      ++ D   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 163 ------LEARVRECDS--VPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 214

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285
            RDE++H            I N +L      + +R   +  EA  +EI +     P    
Sbjct: 215 SRDEAVH------TTASCYIYNNYLGDHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 268

Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
            L+     + E Y++F A+R    I ++PL+        +   ++   K  NFFE R T 
Sbjct: 269 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLSLMSTDKHTNFFECRSTS 328

Query: 343 Y 343
           Y
Sbjct: 329 Y 329


>gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+ +W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPVWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 333

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 30/312 (9%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L  D +  +    G     ++L +   +
Sbjct: 22  TWEK---LTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTLQSQAGL 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            A+   +        L    F E+VH+ ++  I ++L   + E+  ++    S     N 
Sbjct: 76  TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-EIREIFDWSDSEEYLQNK 134

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A++        S     K     FL          E   FY+GF   L     NK+  +A
Sbjct: 135 AVKIGNIYLDESVDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 184

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHE 278
           E  + I+RDES+H   G  +  + ++    L  K+ Q     M   L+E    E  Y H 
Sbjct: 185 EIIKLILRDESVH---GTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYELYDNEGNYTHL 241

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335
              +  +G        ++++ AN+    +G +PLF  T    NP   M+ +       +F
Sbjct: 242 LYDQ--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTTTSNHDF 297

Query: 336 FETRVTEYQQGA 347
           F      Y+ GA
Sbjct: 298 FSQVGNGYRLGA 309


>gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 36/282 (12%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           + W+K   A    W+ T VP+ +D   W++   LTD E+ +I + +G  A  ++L +   
Sbjct: 18  YVWDK---ATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEG 71

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           V  +       +    +      E++H+ ++  I+++L            +  +I    +
Sbjct: 72  VNVMREDARTRKEVGVINDFLMMESIHAKSYGTILSTLN-----------DQKTIDDTFH 120

Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
           W      +QY     +  +  G     +       V  V  EG+ +Y+ F   L     N
Sbjct: 121 WMNNDPRMQYKVRRINEIYQNGNNLEKK-------VASVFLEGILYYSNFFTPLWYRGNN 173

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE--ATLLEI 273
           K+  ++E  + ++RDES+H  +      Q   E     T + Q + R  + +  A LLE 
Sbjct: 174 KLANLSEVIKLVIRDESVHGTYLGYKFQQAFAE----LTPDEQTRFRAWMDDLLADLLEN 229

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +A   +    + +     +Q++++ AN+  + +G   +F +
Sbjct: 230 EFAFTEVVYAPIQM-VEDVKQFVRYNANKAMNNMGFAAIFNH 270


>gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus COL]
 gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus RF122]
 gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus]
 gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus]
 gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus COL]
 gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus
           aureus RF122]
 gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus aureus 04-02981]
 gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O11]
 gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O46]
 gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +  H ++   
Sbjct: 25  WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165
           +      A  E +H+ ++ +I T+L         LDE  L     E P +  K++  +  
Sbjct: 82  KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              L     +      DQ   +   V  V  E   F++GF   L L    KM    E  +
Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+ DES+H  F G+D    ++ E      ++  Q+   +L++  L E +Y    M    
Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E  F P +   +D   K  +FF  +   
Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303

Query: 343 Y 343
           Y
Sbjct: 304 Y 304


>gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
          Length = 307

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 115/309 (37%), Gaps = 46/309 (14%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHL 108
           N W P ++P+  D    K    L++ ++   K    F   +E LV  NI   ++ I+ H 
Sbjct: 28  NRWFPYQIPLAVDA---KDVTKLSETDKEFYKFLFIFLGLAEKLVNFNIDELLVGIHSH- 83

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQ 164
              + + Y   Q   E +H   +  I+      +      Y       P + AK +W   
Sbjct: 84  ---DAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFVVGNPGLKAKLSWLHD 140

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +  ++ +             + + VF ++ EG++F + F  I  L       G+    
Sbjct: 141 KVREATTIA-------------EKVLVFLLI-EGIFFVSSFYSIGLLRVRGICNGVCLAN 186

Query: 225 QYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            YI RDE LH      + N +   +   P  W          +  EA  +EI +  E   
Sbjct: 187 DYISRDELLHTRAAALLYNTLVDPDRKPPVHWI-------HNLFREAVDVEIRFIRER-G 238

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
           +G   +N      +++  A+R   QI L  L+     +  P  + + V    K  NFFE 
Sbjct: 239 RGVTAVNIEDIISFLKATADRMLTQIKLPILYGELAPSGCPLAFNACV----KNINFFER 294

Query: 339 RVTEYQQGA 347
             T+Y    
Sbjct: 295 EGTDYSSSV 303


>gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           IE4771]
          Length = 324

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +     
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAV 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSVL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               +  G+ D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQY--GSGDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285
           DE++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A   E +  G V
Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LSEERRQEIKDFAFD-LLLELYDNEARYTEALYDG-V 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276


>gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 12/195 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P+ + +  D A W   + L D ++ ++      F + E  VA ++   I   +     
Sbjct: 39  WDPSTIDLTQDRADW---DKLRDIDKFLMVNVTSKFGAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
            +  YL +  FEEA H   F+  + ++G+ E +L  + ++V       N+A  + + L  
Sbjct: 96  EEVMYLEQFIFEEAKHVEAFRRFLDAVGVKE-DLVELTKDV-----SPNYAKIFYEELPK 149

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRD 230
             +      + +  ++    + +V EG+    G+     + R  N   G+A+   YI  D
Sbjct: 150 AMWNLNRDPSPENQVRAAVTYNLVVEGVAAEGGYNIFKYITRTFNIFPGLAKMVNYIATD 209

Query: 231 ESLHLNFGIDVINQI 245
           ES H+ FG  +I ++
Sbjct: 210 ESRHIAFGTYLIARL 224


>gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I   +Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKHQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 106/275 (38%), Gaps = 33/275 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W   N +T  E+L   R        +++      +++     
Sbjct: 37  TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 94  TMHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   + L    K+   A+  + I+R
Sbjct: 143 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DES+H  +       G+  +++ + E       E++  +  ++++    EI Y  +    
Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 253

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +G      ++++++ AN+  + +G E LF   E
Sbjct: 254 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 285


>gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
 gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 23/315 (7%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  +KR L   A  E  
Sbjct: 12  PFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIAQVEVS 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +Y     PE        A  E  HS  +  ++  LG +    F    EVP  
Sbjct: 70  V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPIF 126

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
             + N   +Y             ++A    ++ +  F ++ E    ++ FA ILS  R  
Sbjct: 127 KERNNILKEY--------LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFK 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             +  +A    +   DE LH N GI ++ +I  E P + T   + ++   +    LLE  
Sbjct: 175 GYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYILLEDK 233

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLK 330
                  +G +   +      YM++  +    Q+GL+  F  + +   P  W  E +   
Sbjct: 234 MLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEEEVFSN 293

Query: 331 KEKNFFETRVTEYQQ 345
           +  +FF  R T Y +
Sbjct: 294 ELDDFFAKRPTAYTK 308


>gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI39]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLTNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1180]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y +E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTNELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 45/276 (16%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKA 159
                   P     L   +F EAVH+ ++  I ++L     E+   Y    E P +  KA
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTL-CQTKEVDVAYAWSEENPPLQRKA 135

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L +  +             D+   +   +  V  E   FY+GF   +      K+  
Sbjct: 136 QIILAHYVS-------------DEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTN 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            A+  + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y   
Sbjct: 181 TADLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEA 239

Query: 279 TMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              + G+V       + ++ + AN+    +G E LF
Sbjct: 240 LYAETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
 gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 107/271 (39%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 37  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 94  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H           ++V+++ K        +E +  +  +L E    E+ Y  E +  
Sbjct: 201 DEAVHGYYIGHKFQRALEVLSEEK-------RQEIKDFAFELLLELYDNEVRYT-EALYD 252

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G VGL     ++++ + AN+    +G E LF
Sbjct: 253 G-VGLT-EDVKKFLHYNANKALMNLGYEALF 281


>gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           1330]
 gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis biovar Abortus 2308]
 gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis
           ATCC 25840]
 gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis
           ATCC 23365]
 gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           S19]
 gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           F5/99]
 gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
 gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis
           1330]
 gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308]
 gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis
           ATCC 25840]
 gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365]
 gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19]
 gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 37  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 94  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281


>gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
 gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 327

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 35  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 91

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 92  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 140

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 141 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 199 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 252

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 253 GLT-EDVKKFLHYNANKALMNLGYEALF 279


>gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P ++P+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKMPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y      
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242

Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           + G+V       + ++ + AN+    +G E LF
Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271


>gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 358

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 36/288 (12%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL---GFFASSESLVANNIVLAIYRHLSN 110
           W P ++ +Q DL LW S   L++D +L   RNL    F  + +  +   +V     H  +
Sbjct: 40  WRPEDISLQPDLNLWAS---LSEDVKLAYGRNLLVLTFLDTYQGDIGMPVVSRSIDHKYH 96

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQ 167
                     A E AVH+ ++  I  +   +E E+ ++YR   +  ++       + Y +
Sbjct: 97  QRKSVLNFMAAMENAVHAKSYSNIFMTYMKNE-EIDDLYRWGEQNKNMQNILALIIGYYE 155

Query: 168 TLSSPSFTTGTKDADQ---EFLQDL-----FVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            L   ++     D  +   +F  D+      V  V  E   FY+GF   L      K++ 
Sbjct: 156 NLDRLTYRKQYADLGEPVDDFEFDVAQWKAMVASVFLESCLFYSGFYYPLYFYGQGKLMQ 215

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE--ATLLEIAYAH 277
             E    I+RDES+H   G+  I  + +E      ++F  +++  L+E   T L+  Y  
Sbjct: 216 AGEIINLILRDESIH---GL-YIGNLAME----LYRKFDAETQASLYEWLTTYLDAIYEE 267

Query: 278 ETMPKGFVGLNAP-----SCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
           E   +    +  P       + ++++ AN+    +G +  ++Y E NP
Sbjct: 268 EV--ELIEAIYDPVELSHDVKIFVRYNANKAMMNLGFDAYYEYEEVNP 313


>gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 335

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 43  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 99

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 207 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 260

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 261 GLT-EDVKKFLHYNANKALMNLGYEALF 287


>gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
 gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
          Length = 364

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  W+S   LTD ER    R    L    +S++ +     L    H 
Sbjct: 74  NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF +++H+ ++  I ++L   E E+   YR          WA+     
Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 174

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +     TT   + + E      +   +   +  Y GF   L      KM+  A+  + I+
Sbjct: 175 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 234

Query: 229 RDESLH 234
           RD+++H
Sbjct: 235 RDKAIH 240


>gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
 gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
          Length = 327

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 35  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 91

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 92  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 140

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 141 RKSTLILDQYHADNPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 199 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 252

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 253 GLT-EDVKKFLHYNANKALMNLGYEALF 279


>gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           ATCC 23445]
 gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 37  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 94  TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285
           DE++H  + I    Q  +E   + ++E +Q+ +    E  L     E+ Y  E +  G V
Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281


>gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
 gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  W+S   LTD ER    R    L    +S++ +     L    H 
Sbjct: 69  NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 122

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF +++H+ ++  I ++L   E E+   YR          WA+     
Sbjct: 123 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 169

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +     TT   + + E      +   +   +  Y GF   L      KM+  A+  + I+
Sbjct: 170 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 229

Query: 229 RDESLH 234
           RD+++H
Sbjct: 230 RDKAIH 235


>gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
 gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
          Length = 335

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 107/271 (39%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +     
Sbjct: 43  TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 99

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L L            P +     W+ +     
Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              +       AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H           ++V+++ K        +E +  +  +L E    E+ Y  E +  
Sbjct: 207 DEAVHGYYIGYKFQRALEVLSEEK-------RQEIKDFAFELLLELYDNEVRYT-EALYD 258

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G VGL     ++++ + AN+    +G E LF
Sbjct: 259 G-VGLT-EDVKKFLHYNANKALMNLGYEALF 287


>gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 332

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 47/329 (14%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N+++  K    W++ +    N W+P +VP+ +D+  W + N       + +   L    +
Sbjct: 25  NRVVDEKDSEVWDRLVG---NFWLPEKVPLSNDIQSWHTLNEHEQQLTMRVFTGLTLLDT 81

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFN 147
            +  V     +++      P         AF E+VH+ ++  I ++L     +DE   F 
Sbjct: 82  IQGAVG---AVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLSNTPEIDEA--FR 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L+  +              D    +   V   + E   FY+GF  
Sbjct: 137 WSEENPNLQRKAAIVLERYR-------------GDDPLKRK--VASTLLESFLFYSGFYL 181

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQK 260
            +      K+   A+  + I+RDE++H  +       G+    + + E       E +  
Sbjct: 182 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLAASTEQRRE-------ELKDF 234

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317
           + ++L +    E+ Y  +      VGL     ++++++ AN+  + +G E LF   E   
Sbjct: 235 TFSLLFDLYENEVEYTQDLYDP--VGLTE-DVKKFLRYNANKALNNLGYEGLFPKDETSV 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           NP    +   +  +  +FF    + Y  G
Sbjct: 292 NPAILSALSPNADENHDFFSGSGSSYVIG 320


>gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
 gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
          Length = 296

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/275 (18%), Positives = 106/275 (38%), Gaps = 33/275 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W   N +T  E+L   R        +++      +++     
Sbjct: 36  TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 92

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 93  TMHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 141

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   + L    K+   A+  + I+R
Sbjct: 142 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 199

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DES+H  +       G+  +++ + E       E++  +  ++++    EI Y  +    
Sbjct: 200 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 252

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +G      ++++++ AN+  + +G E LF   E
Sbjct: 253 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 284


>gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia
           pestis KIM 10]
 gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Nepal516]
 gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Antiqua]
 gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CO92]
 gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 23/270 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   LT  E+ +  R        +++       A+ +   
Sbjct: 31  TSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         +F EAVH+ ++  I ++L L   ++ + YR      ++ N  LQ    +
Sbjct: 88  TPHEEAIFSNISFMEAVHARSYSSIFSTLCL-TSDVDDAYR-----WSEDNGPLQKKADI 141

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
            S  +     D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 142 ISQHY--HNDDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + G      + KI++ H   +E +  +  +L +    E+ Y  +      VG 
Sbjct: 195 DEAVHGYYIGYKFQKGLGKIDSAH--RQEIKNFAFDLLQDLYDNEVRYTEDLY--DHVGW 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                ++++ + AN+    +G E LF  ++
Sbjct: 251 TE-DVKKFLHYNANKALMNLGYEALFPASQ 279


>gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W +   L   E+ M  R        +++      +++     
Sbjct: 33  TGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGLTLLDTVQGTVGAVSLIPDAV 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P     L   AF E+VH+ ++  I ++L   E   E F    E   +  KA   L Y +
Sbjct: 90  TPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSEENEYLQKKAKIILDYYR 149

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +DA++       V   + E   FY+GF   +      K+   A+  + I
Sbjct: 150 G----------EDAEKRK-----VASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 194

Query: 228 MRDESLH 234
           +RDE++H
Sbjct: 195 IRDEAVH 201


>gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
 gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
          Length = 331

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  W+S   LTD ER    R    L    +S++ +     L    H 
Sbjct: 41  NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 94

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF +++H+ ++  I ++L   E E+   YR          WA+     
Sbjct: 95  RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAV--GND 141

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +     TT   + + E      +   +   +  Y GF   L      KM+  A+  + I+
Sbjct: 142 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 201

Query: 229 RDESLH 234
           RD+++H
Sbjct: 202 RDKAIH 207


>gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
 gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
          Length = 364

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P +VP+ +D+  W+S   LTD ER    R    L    +S++ +     L    H 
Sbjct: 74  NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF +++H+ ++  I ++L   E E+   YR          WA+     
Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 174

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           +     TT   + + E      +   +   +  Y GF   L      KM+  A+  + I+
Sbjct: 175 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 234

Query: 229 RDESLH 234
           RD+++H
Sbjct: 235 RDKAIH 240


>gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum NCC2705]
 gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           longum NCC2705]
          Length = 330

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 21/263 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W+    +T+DE  +  R        +++      +++      P
Sbjct: 40  NFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTP 96

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    AF E+VH+ ++  I ++L   E            I A  +W+         
Sbjct: 97  HEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQKK 145

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                   + D  + +   V   + E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 146 AEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDE 203

Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ++H  + I    Q  I       + + Q  +  +L+E    E+ Y         VGL   
Sbjct: 204 AVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLY--DCVGL-TD 259

Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313
             E+++++  N+    +G   LF
Sbjct: 260 DVEKFLRYNGNKALMNLGYPALF 282


>gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC 49946]
 gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora CFBP1430]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W   N L+ DE+ +  R        +++       A+     
Sbjct: 27  TSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  I ++L    D    +    +   + AKA   LQ+  
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQAKAQIILQHYY 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           ++DE++H  + G      ++ E P    +E QQ +  +L E    E+AY  + +  G VG
Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETPQR-KEELQQFAIELLLELYENELAYT-DALYSG-VG 245

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 ++++ + AN+    +G E LF
Sbjct: 246 WQE-DVKKFLHYNANKALMNLGYEALF 271


>gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETSW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli EPECa14]
 gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 319

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
 gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           P  T       ++ L    V  V  E   FY+GF   L L    K+    E    I+R
Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193


>gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 332

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 21/269 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W++ N       + +   L    + +  V    +L   + + 
Sbjct: 40  TGNFWLPEKVPVSNDIPSWRTLNDYEKTATMRVFTGLTLLDTIQGTVGAVSLLPDAKTMH 99

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                  +   AF E+VH+ ++  I  +L            + P+I     W+ +     
Sbjct: 100 EEAVYTNI---AFMESVHAKSYSNIFMTLA-----------DTPAINDAFRWSEENESLQ 145

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V   + E   FY+GF   +     +K+   A+  + I+R
Sbjct: 146 RKAKIILSYYEGDNPHKKK--VASTLLESFLFYSGFYLPMYWSSHSKLTNTADVIRLIIR 203

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLN 288
           DE++H  +      + + +       E +  +  +L++    E  Y  +   P G+    
Sbjct: 204 DEAVHGYYIGYKYQRGQADLSQAERDELKDYTFNLLYDLYENETQYTEDIYDPLGWT--- 260

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               ++++++ AN+  + +G E LF   E
Sbjct: 261 -EDVKRFLRYNANKALNNLGYEGLFPQDE 288


>gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3]
 gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 31/263 (11%)

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           F A +E LV  NI   + +  S+ +   Y   Q   E +H  T+  I+  L   + +   
Sbjct: 56  FLAMAEKLVNFNIDELLPQFCSH-DIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVA 114

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            Y +       A+ ALQ      +    +    A++       + +++ EG++F + F  
Sbjct: 115 QYAD----EVIADKALQAKICWLNGMVNSAVTKAEK------ILIFLLIEGIFFISSFYS 164

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL-WTKEFQQKSRTM 264
           I  L     M GI     YI RDE LH      + N +  K E P   W +   +++   
Sbjct: 165 IAVLRTRGIMPGICLANNYISRDELLHTTAATLLYNSMTSKSERPQSEWIEALFRRA--- 221

Query: 265 LHEATLLEIAYAH-ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPF 320
                 +++ Y   E   +G   ++      +++  A+R    +G+  ++      + P 
Sbjct: 222 ------VDVEYNFIEARGRGVTNIDLKGIRDFLEATADRILGDLGMTAIYDTRPPPDCPL 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343
            +M+ V    K  NFFE   +EY
Sbjct: 276 TYMTSV----KHTNFFEQENSEY 294


>gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta
           [Sanguibacter keddieii DSM 10542]
 gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 30/304 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      +++     
Sbjct: 33  TGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGLTLLDTIQGTVGAVSLIPDAI 89

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166
            P         AF E+VH+ ++  I ++L +   E+ + +R   E  ++  KA   L+Y 
Sbjct: 90  TPHEEAVYTNIAFMESVHAKSYSSIFSTL-ISTQEIDDAFRWSEENANLQRKAEIVLEYY 148

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
              S       +                + E   FY+GF   +      K+   A+  + 
Sbjct: 149 HGDSPLKRKVAS---------------TLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 193

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           I+RDE++H  + I    Q  +E      + E +  +  +L E    E+ Y  +      V
Sbjct: 194 IIRDEAVH-GYYIGYKYQKGLEKLSPAERDEMKAYTFELLFELYENEVQYTADLYDG--V 250

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
           GL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF    + 
Sbjct: 251 GLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFSGSGSS 309

Query: 343 YQQG 346
           Y  G
Sbjct: 310 YVIG 313


>gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 113/268 (42%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   LT  E+ +  R        +++       A+ +   
Sbjct: 31  TSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167
            P         +F EAVH+ ++  I ++L L  D  + +    +   +  KA+  LQ+  
Sbjct: 88  TPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIILQHYH 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 148 N----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 192

Query: 228 MRDESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           +RDE++H  + G      + K+++ H   +E +  +  +L +    E+ Y  +      V
Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDSVH--RQEIKNFAFDLLQDLYDNEVRYTEDLY--DHV 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G      ++++ + AN+    +G E LF
Sbjct: 249 GWTE-DVKKFLHYNANKALMNLGYEALF 275


>gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
 gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
          Length = 324

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   L  +E+ +  R        +++      + +    +
Sbjct: 32  TSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGLTLLDTIQNGVGSVRLMADSA 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G           + V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMREYDSGNP-------LKMKVASVFLESFLFYSGFYLPMFWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E  Y  +      VGL 
Sbjct: 196 DEAVH-GYYIGYKFQRALERLGEAEKQEIKDFAFDLLLELYDNEAKYTQDLYDG--VGLT 252

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               +Q++ + AN+    +G E LF
Sbjct: 253 E-DVKQFLHYNANKALMNLGYEALF 276


>gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter sp. 638]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 112/274 (40%), Gaps = 39/274 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   L+  E+ +  R        +++  +    A+     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLLDTIQNSVGAPALMGDSL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  I ++L    D    ++      S+  KA   L+Y  
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSEASTSLQRKAQLVLEYYH 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                        AD    +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 144 -------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ I++ K E       E +  +  +L +    E++Y  E  
Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKISEAKRE-------ELKGFALDLLMDLYDNELSYTEEL- 240

Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313
              + G +     + ++ + AN+    +G E LF
Sbjct: 241 ---YAGTSWETDVKAFLCYNANKALMNLGYEALF 271


>gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli
 gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
           With Ferrous Ions
 gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           sonnei Ss046]
 gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           ETEC H10407]
 gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
 gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 3431]
 gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LT-68]
 gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1357]
 gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
 gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 79

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEY 343
           +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       +++ NFFE RV+ Y
Sbjct: 11  LGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQRSNFFEARVSNY 69

Query: 344 QQGA 347
            +G+
Sbjct: 70  AKGS 73


>gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli STEC_7v]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   +  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISMAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli RN587/1]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D+   +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           +   + ++ + AN+    +G EPLF
Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271


>gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 37/272 (13%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102
           +N W+P +VP+ +D+  W++ +    +++L I+   G          A + SL+A+ I  
Sbjct: 28  SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                   P     L   +F EAVH+ ++  I ++L            +   + A   W+
Sbjct: 85  --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                +D+   +   +  V  E   FY+GF   +      K+   A+
Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + I+RDE++H  + I    QI ++    +  +E +  +  +L E    EI Y  E + 
Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYT-EALY 241

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                +N    + ++ + AN+    +G E LF
Sbjct: 242 AETDWVN--DVKAFLCYNANKALMNLGYEALF 271


>gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 294

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111
           W P ++    D   WK    L ++++L +      F   E  V  +I L +   +S    
Sbjct: 30  WNPVDIDFTQDKEDWKK---LNEEQQLEVLTQFAQFIGGEEAVTQDI-LPMIMAVSKKGW 85

Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM----YREVPSITAKANWALQYT 166
            E   YL    FEEA H+  F   +  +G+ + +L ++    YR++            + 
Sbjct: 86  FEEESYLTTFLFEEAKHAEFFSLFLEEIGVKD-DLTHLLTPGYRKL------------FD 132

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTG---FAQILSLGRANKMVGIAE 222
           +TL +       +D   E + D  V Y +F EG+   TG   F + LS   AN   G   
Sbjct: 133 ETLPA-VMGRLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALS--SANLFPGFIS 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLL 271
             + + RDE  H+ FG  +I ++  ENP L   E  QQ+ + +L  A +L
Sbjct: 190 GIRNVKRDEGRHIGFGTFLIQRLISENPELELFERVQQRLQELLPIAMML 239


>gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/285 (18%), Positives = 110/285 (38%), Gaps = 41/285 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   LT  E+ +  R        +++       A+     
Sbjct: 31  TSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPALIADAI 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         +F EAVH+ ++  I ++L            + P +     W+ +     
Sbjct: 88  TPHEEAVYSNISFMEAVHARSYSSIFSTLC-----------QTPDVDDAYRWSEENRALQ 136

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              S       +D   ++   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 137 KKASIILAHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +       G++ ++  +        ++ +  +  +L +    E+ Y  E    
Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDAAR-------RQQVKNFAFDLLQDLYDNEVRYTEEL--- 244

Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            + G+      + ++ + AN+    +G E LF       P M+EV
Sbjct: 245 -YDGVGWTEDVKTFLHYNANKALMNLGYEALFP------PSMAEV 282


>gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK966]
 gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
 gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 319

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580]
 gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 325

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 20/298 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+P E+ +  DL  WK       D  + +   L    + +    N  +  +  H+   + 
Sbjct: 30  WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPLVAEHVEGHQR 86

Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170
           +  L      E AVH+ ++  I  +L   E   E+F   ++   +  KA   +   + + 
Sbjct: 87  KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQIIVGLYEKI- 145

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   +  D+  L    V  V  E   FY+GF   L      K++   E    I+RD
Sbjct: 146 --------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E++H  +   +  +I  +      +E    S  +L E    E+ Y  +   +  VGL + 
Sbjct: 198 EAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYDQ--VGL-SH 254

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             ++++++ AN+    +G E  F+  E NP   ++ +    K  +FF  +   Y++  
Sbjct: 255 DVKKFIRYNANKALMNLGFEAYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311


>gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKIFLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp.
           Ejp617]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W S N       + +   L    + ++ +    ++A      
Sbjct: 27  TSNFWLPEKVPLSNDIPSWNSLNAEQQQLTIRVFTGLTLLDTIQNTLGAPALMA---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  I ++L    D    +    +   +  KA   LQ+  
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQGKAQIILQHYY 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           ++DE++H  + G      ++ E P L  +E QQ +  +L E    E+AY  E +  G VG
Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETP-LRKEELQQFAIELLLELYENELAYT-EALYAG-VG 245

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 ++++ + AN+    +G E LF
Sbjct: 246 WQK-DVKKFLHYNANKALMNLGYEALF 271


>gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae]
          Length = 321

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 25/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+ DD  +W   N L  DER + ++ LG     ++   +  +  I   + N   
Sbjct: 30  WVDEEIPISDDKLVW---NSLDIDERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLAY 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  L      E +H+ ++  I +SL             +  I    +W   Y        
Sbjct: 87  KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIERIDYIFDWVKTYRNFQDKLD 135

Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
              G  +   D+  L       V  E   FY+GF   L L    KM+   E    I+RDE
Sbjct: 136 LILGKYNNIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMINSGEIINLILRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQK-SRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           S+H  F + ++ Q +        +EF  K +  +L     LE AY  +      +GL + 
Sbjct: 196 SVHGVF-VGLLAQEEFNKMTSREQEFAYKEAMFILDRLYDLEKAYTKDLYSS--IGLES- 251

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           + + ++++ A++    +G EP F   +   NP        D K   +FF T+   Y
Sbjct: 252 AVDVFVRYNADKALMNLGFEPTFNIQDIDVNPLVLNGLRTDTKTH-DFFSTKGNGY 306


>gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 155-74]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E  P    +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKIPLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           tribocorum CIP 105476]
 gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           tribocorum CIP 105476]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 29/267 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W S   LT++ER +  R        +++      +++       
Sbjct: 34  NFWLPEKVPLSNDIPSWSS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLLADAITE 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                L   AF EAVH+ ++  I ++L   ++  + F    E   +  KA   L+  +  
Sbjct: 91  HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENSHLQKKARLVLERYE-- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      A+    +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 -----------ANDPLKKK--IASTLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195

Query: 230 DESLHLNFGIDVINQI---KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           DE++H  + I    Q+   K+E      +E +  +  +L +   +E  Y  +      +G
Sbjct: 196 DEAVH-GYYIGYKFQLGYAKLEEAK--RQEVKDFAFNLLFDLYNIECKYTEDLYDS--LG 250

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           L     + ++ + AN+    +G E LF
Sbjct: 251 L-TEDVKIFLHYNANKALMNLGFEALF 276


>gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
 gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
          Length = 326

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 106/267 (39%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +DL  W++ +       + +   L    + ++++       +     
Sbjct: 34  TSNFWLPEKVPLSNDLPAWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMDDAI 90

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     L   +F EAVH+ ++  I ++L    D    +    E   +  KA   L++ +
Sbjct: 91  TPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSEENVPLQNKARIILEHYR 150

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 151 ----------ANDPLKKKIASVFL-----ESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 195

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVG 286
           +RDE++H  +      Q       L  +E QQ +  +L      E+AY        G+V 
Sbjct: 196 IRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLALYENEVAYTEALYADVGWV- 254

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 + ++ + AN+    +G E LF
Sbjct: 255 ---EEVKTFLHYNANKALMNLGYEALF 278


>gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
 gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 32/303 (10%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDD-ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           M TE   Q DL      + L D+ ER +++R L   A  E L        +Y     PE 
Sbjct: 1   MHTEFSFQSDL----QDHALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFPKPEI 55

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172
            +  L  A  E  H++ + +++  LGL+E   F    E  S       AL+   Q L   
Sbjct: 56  AEVGLTFAESEVRHANAYAHLLELLGLEEA--FGQALEGAS-------ALRDRAQALGEA 106

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDE 231
                 KD  +E+   LF+F    E +  ++ F  +++L R  N+  GI+   +   ++E
Sbjct: 107 LRRAQGKDL-REYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEE 165

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           ++H  FG++++  ++ E+P    + FQ+++  +        +  A E +         P+
Sbjct: 166 NVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQ-----GLFRAEEALLDWLFSAGEPA 220

Query: 292 C---EQYMQFIANRRCHQI---GLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTE 342
                + ++F+  R    +   GL P+F   E       W +  +   KE +FF  R   
Sbjct: 221 LVGHRETLEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVA 280

Query: 343 YQQ 345
           Y +
Sbjct: 281 YAR 283


>gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter
           turicensis z3032]
          Length = 320

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   LT  E+ +  R        +++       A+     
Sbjct: 28  TSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLLDTIQNAVGAPALMADAL 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            + P + A   W+ +     
Sbjct: 85  TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------QTPDVDAAYAWSEENAPLQ 133

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 134 RKAQIILAHYRDDDPLKKK--IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 191

Query: 230 DESLH 234
           DE++H
Sbjct: 192 DEAVH 196


>gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC
           49188]
          Length = 328

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 33/269 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W++   L   E+ +  R        +++      + +    + P
Sbjct: 38  NFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAATP 94

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                L   +F EAVH+ ++  I ++L L            P +     W+ +       
Sbjct: 95  HEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQRK 143

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                    AD    +   +  V  E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 144 SVLILDQYRADDPLKRK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDE 201

Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           ++H          G++ +N    E      K+F   +  +L E    E+ Y  E +  G 
Sbjct: 202 AVHGYYIGYKFQRGLERLN----EEQKQAIKDF---AFELLLELYDNEVRYT-EALYDG- 252

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           VGL     ++++ + AN+    +G E LF
Sbjct: 253 VGLTE-DVKKFLHYNANKALMNLGYEALF 280


>gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 25/265 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W     LT +E+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAK---LTAEEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L    D  E +    E  ++  KAN  L++    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENIALQKKANIILEHYNN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      ++   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   +  + E +  +  +L +    E+ Y  +      VG  
Sbjct: 195 DEAVH-GYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYDNEVRYTADLYDG--VGW- 250

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               ++++ + AN+    +G E LF
Sbjct: 251 TEDVKKFLHYNANKALMNLGYEALF 275


>gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894]
          Length = 320

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   LT  E+ +  R        +++       A+     
Sbjct: 28  TSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLLDTIQNAVGAPALMADAL 84

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            + P + A   W+ +     
Sbjct: 85  TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------QTPDVDAAYAWSEENAPLQ 133

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 134 RKAQIILAHYRDDDPLKKK--IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 191

Query: 230 DESLH 234
           DE++H
Sbjct: 192 DEAVH 196


>gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii]
          Length = 321

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+ DD  +W + +G   +ER + ++ LG     ++   +  +  I   + N + 
Sbjct: 30  WVDEEIPISDDKLVWNTLDG---EERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLDY 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  L      E +H+ ++  I +SL             +  I     W   Y        
Sbjct: 87  KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDHIFGWVKTYRNFQDKLD 135

Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
              G  ++  D+  L       V  E   FY+GF   L L    KMV   E    I+RDE
Sbjct: 136 LILGKYNSIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFVGLNAP 290
           S+H  F + ++ Q +        + F Q+  T++ E    LE AY  +      +GL   
Sbjct: 196 SVHGVF-VGLLAQEEFNKMTFKEQAFAQREATLILERLYYLESAYTKDLYSS--IGLEG- 251

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           + + ++++ A++    +G +  F   +   NP   ++ +    K  +FF T+   Y
Sbjct: 252 AVDVFVRYNADKALMNLGFDSAFNIRDIDVNPLV-LNGLRTNTKTHDFFSTKGNGY 306


>gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +  I +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVICQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +     + E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   +  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISMAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W   N ++ DE+ +  R        +++       A+     
Sbjct: 27  TSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P     +   +F EAVH+ ++  I ++L    D    +    +   + AKA   LQ+  
Sbjct: 84  TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQAKAQIILQHYY 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           ++DE++H  + G      ++ E P    +E QQ +  +L E    E+AY  + +  G VG
Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETPQR-KEELQQFAIELLLELYENELAYT-DALYSG-VG 245

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 ++++ + AN+    +G E LF
Sbjct: 246 WQE-DVKKFLHYNANKALMNLGYEALF 271


>gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +           +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  I       + + Q  +  +L+E    E+ Y      +  VGL 
Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               E+++++  N+    +G   LF
Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALF 282


>gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
          Length = 319

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
 gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
          Length = 318

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    +T+ E  ++    G     ++L + + +
Sbjct: 21  TWEK---LTEQFWLDTRIPLSNDLDDWRK---MTEQEHYLVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159
            ++ +          L    F E+VH+ ++  I  +L    +  E+F+           +
Sbjct: 75  ASLKQATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDW--------TNS 126

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  +  G++   +       V  V  E   FY+GF   L     NK+  
Sbjct: 127 NEFLQYKANRINQVYQNGSQLQRK-------VASVFLETFLFYSGFYTPLWYLGHNKLNN 179

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + I+RDES+H
Sbjct: 180 VAEIIKLILRDESVH 194


>gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium
           longum DJO10A]
 gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum DJO10A]
 gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum
           DJO10A]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +  R        +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLH 234
           DE++H
Sbjct: 202 DEAVH 206


>gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
 gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W+    +T+DE  +           +++      +++     
Sbjct: 38  TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L   E            I A  +W+       
Sbjct: 95  TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D  + +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  I         + Q  +  +L+E    E+ Y      +  VGL 
Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDR--VGLT 258

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
               E+++++  N+    +G   LF
Sbjct: 259 E-DVEKFLRYNGNKALMNLGYPALF 282


>gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
 gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
          Length = 323

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 52/278 (18%), Positives = 113/278 (40%), Gaps = 39/278 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W     LT  E+ +  R        +++        + +   
Sbjct: 31  TSNFWLPEKVPLSNDIPSWAM---LTAQEKQLTIRVFTGLTLLDTIQNTVGAPTLLQDAI 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167
            P         +F EAVH+ ++  I ++L +  D  + +    E  ++  KA   L +  
Sbjct: 88  TPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENTTLQKKAQIILNHYH 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                       D  ++ +  +F+     E   FY+GF   +      K+   A+  + I
Sbjct: 148 H----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYFSSRAKLTNTADLIRLI 192

Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +RDE++H  +       G++ ++ ++        +E +  +  +L +    E+ Y  E  
Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDAVR-------RQEIKNFTFELLQDLYDNEVRYTEEL- 244

Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              + G+  +   ++++ + AN+    +G E LF   E
Sbjct: 245 ---YDGVGWSEDVKKFLHYNANKALMNLGYEALFPANE 279


>gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
 gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  MPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + +++V    ++A      
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIVGAPALMA---DSI 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTTDVDAAYAWSEENNPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      +D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIILAHYASDNPLQKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLH 234
           DE++H
Sbjct: 191 DEAVH 195


>gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain
           G]
          Length = 342

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 34/304 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE  +       +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 53  NRWLETETELVFVGDEEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L    D+     + R +  P+I  K +W      
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTITHPAIRVKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      ++ D   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 ------LEARVRECDS--IPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285
            RDE++H            I N +L      + +R   +  EA  +EI +     P    
Sbjct: 218 SRDEAVH------TTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 271

Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS---EVIDLKKEKNFFETR 339
            L+     + E Y++F A+R    I ++PL+  +  P P  S    ++   K  NFFE R
Sbjct: 272 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPDASFPLSLMSTDKHTNFFECR 330

Query: 340 VTEY 343
            T Y
Sbjct: 331 STSY 334


>gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
 gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
          Length = 329

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 28/279 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WE+      N W+P +VP+ +DL  WK+   LT+ E+    R        +++      
Sbjct: 32  VWER---LTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGA 85

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           +++                AF E+VH+ ++  I  +L              P I     W
Sbjct: 86  ISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRW 134

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           + +               + D    +   V   + E   FY+GF   +      K+   A
Sbjct: 135 SEENENLQKKAKIILSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTA 192

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHE 278
           +  + I+RDE++H   G  +  + + E   L  K   E +  +  +  E    EI Y  +
Sbjct: 193 DIIRLIIRDEAVH---GYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFELYDNEIDYTED 249

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              +  +G      ++++++ AN+  + +G E LF   E
Sbjct: 250 LYDE--LGW-TEDVKRFLRYNANKALNNLGFEGLFPADE 285


>gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
 gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
          Length = 129

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
            +E +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP 
Sbjct: 18  AEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPA 77

Query: 313 F-KYTENPFPWMS 324
           +   T NP PW++
Sbjct: 78  YPAATNNPIPWIN 90


>gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 322

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 32/278 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +  H  +   
Sbjct: 25  WVDTEFKVSKDIKSWNED--LNDKEREAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170
           +         E +H+ ++  I TSL   +   + +   VPS   +  KA     Y   L 
Sbjct: 83  QAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQFKAKLIEDYYMKLF 142

Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            P   T           DL+   V  V  E   FY+GF   L L    K+    E  + I
Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEIIRKI 192

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPK 282
           + DE++H +F G D     K   P     E Q+++   +++  L     E+ Y  +   +
Sbjct: 193 LLDETIHGSFTGFDAQELFKTLTP-----EEQERAEKEMYKLLLDLYENELKYTKDIYDE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
             +GL     + Y+++ ANR    +G    F+  E NP
Sbjct: 248 --IGL-YEDVKDYVEYNANRALANLGYPGYFEDKEINP 282


>gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 82

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  DL  W++   LT +E+  IK  L FFA+S+ +V  N+       +  PE 
Sbjct: 9   WTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFSCEVQIPEA 65

Query: 114 RQYLLRQAFEEAVHSHT 130
           R +   Q   E +HS T
Sbjct: 66  RAFYGFQTGMETIHSET 82


>gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas
           phage JG004]
          Length = 348

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 34/252 (13%)

Query: 82  IKRNLGFFASSESLVANNIVLA-IYRHLSNPECR-QYLLRQAFEEAVHSHTFQYIITSLG 139
           +K  L  F   E +V     +  + R    PE +    +    E AVH+  +  I   LG
Sbjct: 73  VKTVLQLFLKYELIVGEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLG 132

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           +D    +  Y++ P +  + +W       L S          D++ +  + +F +  E  
Sbjct: 133 MDTDADYVAYKDDPELMGRMDW-------LESVL-------GDEDDVLSVIIFSLT-ETA 177

Query: 200 WFYTGFAQILSL--GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
             ++ FA + S      N +  IA        DE LH     ++INQ   E      +  
Sbjct: 178 LLFSSFAILKSFQCNGYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAE----IGRPL 233

Query: 258 QQKSRTMLHEATLLEIAYAHE------TMPKGFVGLNAPSCEQYMQFIANRR---CHQIG 308
            + +R +      ++  YAHE       +P G   LN  S E Y  F+  R    C ++G
Sbjct: 234 SEDTRRVEKIRQAIDHVYAHECRIVDMAIPGG--ELNGESAENYKAFVRYRLNVWCRRLG 291

Query: 309 LEPLFKYTENPF 320
           LE  F+  + P 
Sbjct: 292 LEDHFENDDTPI 303


>gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-272]
 gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-227]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   LT  E+ +  R        ++L   N++ A    L 
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTL--QNVIGAPSLMLD 81

Query: 110 --NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
              P     L   +F EAVH+ ++  I ++L            +   + A   W+ +   
Sbjct: 82  ALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAP 130

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 131 LQRKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +    
Sbjct: 189 IRDEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW- 246

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             A   + ++ +  N+    +G EPLF
Sbjct: 247 --ADDVKAFLCYNTNKALMNLGYEPLF 271


>gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
 gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
          Length = 309

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 45/285 (15%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +         L +   L    + ++ V    ++A       P
Sbjct: 33  NFWLPEKVPLSNDIPSWATLTAKEQQLTLRVFTGLTLLDTIQNTVGAPALMA---DALTP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L    D  + +   +E  ++  KAN  L +    
Sbjct: 90  HEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYRWSQENHALQKKANLILTHYH-- 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      AD   L    V  V  E   FY+GF   +      K+   A   + I+R
Sbjct: 148 -----------ADDPLLMK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTAHLIRLIIR 194

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            E++H  +       G++ ++ I+        ++ +  +  +LH+    E+ Y  +    
Sbjct: 195 YEAVHGYYIGYKFQKGLERVDVIR-------RQQVKNVAFDLLHDLYDNEVCYTQDL--- 244

Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            + G+      + ++ + AN+    +G E LF       P M EV
Sbjct: 245 -YDGVGWTEDVKTFLHYNANKALMNLGYEALFP------PRMVEV 282


>gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103]
 gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103]
 gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea
           ananatis AJ13355]
          Length = 319

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +DL  W++ +       + +   L    + ++++       +     
Sbjct: 27  TSNFWLPEKVPLSNDLPAWQTLDKQHQQLTIRVFTGLTLLDTIQNVLG---APGLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L                + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HTSDVDAAYQWSEENQALQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           +          AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 NKAEIILTHYRADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E      +E  QQ +  +L      E+ Y       G VG  
Sbjct: 191 DEAVH-GYYIGYKYQKALEQVDEGRREALQQFAIDLLLALYENEVVYTEALY--GDVGW- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G E LF
Sbjct: 247 AEEVKTFLHYNANKALMNLGYEALF 271


>gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +        ++ I+Q + E       E +  +  +L E    E+ Y  E   +
Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQTRRE-------ELKSFAFDLLLELYDNELQYTDELYAE 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 A   + ++ + AN+    +G EPLF
Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/268 (19%), Positives = 100/268 (37%), Gaps = 19/268 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  WK+   LT+ E+    R        +++      +++     
Sbjct: 37  TGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAISLLPDSQ 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 94  TLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENENLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 KKAKIILSYYKGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q   +       E ++ +  +L++    EI Y  +      +G   
Sbjct: 201 DEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYDLYDNEIDYTEDLYDD--LGW-T 257

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              ++++++ AN+  + +G E LF   E
Sbjct: 258 EDVKRFLRYNANKALNNLGFEGLFPADE 285


>gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + +++       A+ +   
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAG---APALMQDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      AD    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIILQHYTADNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLH 234
           DE++H
Sbjct: 191 DEAVH 195


>gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 107/280 (38%), Gaps = 31/280 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   LT  E+ +  R        +++       A+     
Sbjct: 31  TSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPALIADAL 87

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P          F EAVH+ ++  I ++L            + P +     W+ +     
Sbjct: 88  TPHEEAVYSNIGFMEAVHARSYSSIFSTLC-----------QTPDVDDAYRWSEENHALQ 136

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                      +D   L+   V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 137 KKAHIILAHYRSDDPLLKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287
           DE++H  + I    Q  +E     T+  Q K+    +L +    E+ Y  E     + G+
Sbjct: 195 DEAVH-GYYIGYKFQKGLEKVDA-TRRQQVKNFAFDLLQDLYDNEVRYTEEL----YDGV 248

Query: 288 N-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
                 + ++ + AN+    +G E LF       P M+EV
Sbjct: 249 GWTEDVKTFLHYNANKALMNLGYEALFP------PAMAEV 282


>gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 116/304 (38%), Gaps = 39/304 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY--------AHET 279
            RDE++H      + N     +     K   ++   +  +A  +EI +        +H  
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P   V +     E Y++F A+R    I ++PLF        +   ++   K  NFFE R
Sbjct: 241 SPAALVAI-----ENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECR 295

Query: 340 VTEY 343
            T Y
Sbjct: 296 STSY 299


>gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
 gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G +PLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYKPLF 271


>gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+ DD  +W + +G   +ER + ++ LG     ++   +  +  +   + N + 
Sbjct: 30  WVDEEIPISDDKLVWNTLDG---EERDVYEKVLGGLTLLDTEQGSVGMPRLALAIDNLDY 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  L      E +H+ ++  I +SL             +  I     W   Y        
Sbjct: 87  KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDHIFGWVKTYRNFQDKLD 135

Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
              G  ++  D+  L       V  E   FY+GF   L L    KMV   E    I+RDE
Sbjct: 136 LILGKYNSIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFVGLNAP 290
           S+H  F + ++ Q +        + F Q+  T++ E    LE AY  +      +GL   
Sbjct: 196 SVHGVF-VGLLAQEEFNKMTFKEQAFAQREATLILERLYYLESAYTKDLYSS--IGLEG- 251

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           + + ++++ A++    +G +  F   +   NP   ++ +    K  +FF T+   Y
Sbjct: 252 AVDVFVRYNADKALMNLGFDSAFNIRDIDVNPLV-LNGLRTNTKTHDFFSTKGNGY 306


>gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
 gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
          Length = 193

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+ +  D   W     L+ +E++  KR LG     ++      +  +  HL N + 
Sbjct: 26  WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA     Y + L  
Sbjct: 83  KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              T       ++ L    V  V  E   FY+GF   L L    K+    E    I+R
Sbjct: 143 SEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193


>gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 120/317 (37%), Gaps = 27/317 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  IKR L   A  E  
Sbjct: 12  PFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIAQVEVS 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +Y     PE        A  E  HS  +  ++  LG +    F    EVP  
Sbjct: 70  V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPVF 126

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214
             +         T+         ++A    ++ +  F ++ E    ++ FA +LS  R  
Sbjct: 127 KER--------NTVLKEYLAKNRENA----MERILFFTLIIENASLFSQFATVLSFARFK 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE-- 272
             +  +A    +   DE LH N GI ++ +I  E P +  K  +  +   +    +LE  
Sbjct: 175 GYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYIVLEDK 233

Query: 273 -IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVID 328
            + +  E     F G        YM++  +    Q+GL   F  + +   P  W  E + 
Sbjct: 234 MLDWIFEQGELDFFG--KKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEEEVF 291

Query: 329 LKKEKNFFETRVTEYQQ 345
             +  +FF  R T Y +
Sbjct: 292 SNELDDFFAKRPTAYTK 308


>gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 122/291 (41%), Gaps = 36/291 (12%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D NQ+  +     WEK        W+ T +P+ +DL  W++   L+  E+ ++ +  G  
Sbjct: 36  DWNQVEDMIDKLTWEK---LTEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 89

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L +      +  ++             F E+VH+ ++  I ++L   + E+ +++
Sbjct: 90  TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHT-KAEIEDIF 148

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               +     N  LQ+     +  + +  KDA +     + V   + E   FY+GF   L
Sbjct: 149 EWTNN-----NEYLQFKAKKINEIYQS--KDALK-----MKVASTMLETFLFYSGFFTPL 196

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262
                NK+  +AE  + I+RDES+H  +       G + +++ + E   +W         
Sbjct: 197 YYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELSEQEQEEMKMWV-------Y 249

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +  E    E+ Y      +  VG      + ++++ AN+    +G +PLF
Sbjct: 250 NLCLELYQNEVKYTQSIYDQ--VGW-TEKVKVFIRYNANKALQNLGFDPLF 297


>gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE15]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 32/278 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +  H  +   
Sbjct: 25  WVDTEFKVSKDIKSWNED--LNDKEREAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170
           +         E +H+ ++  I TSL   +   + +   VPS   +  KA     Y   L 
Sbjct: 83  QAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQYKAKLIEDYYMKLF 142

Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            P   T           DL+   V  V  E   FY+GF   L L    K+    E  + I
Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEVIRKI 192

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPK 282
           + DE++H +F G D     K       T E Q+++   +++  L     E+ Y  +   +
Sbjct: 193 LLDETIHGSFTGFDAQEVFKT-----LTAEEQERAEKEMYKLLLDLYENELVYTKDIYSE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
             +GL     + Y+++ ANR    +G    F+  E NP
Sbjct: 248 --IGL-YEEVKDYVEYNANRALANLGYPGYFEDKEINP 282


>gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
 gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/301 (18%), Positives = 115/301 (38%), Gaps = 24/301 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           A   + ++ + AN+    +G EPLF       NP    +   +  +  +FF +  + Y  
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSSSGSSYVM 306

Query: 346 G 346
           G
Sbjct: 307 G 307


>gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ +       + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +    L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLGKTSLEQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
 gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 37/300 (12%)

Query: 54  WMPTEVPMQDDLA----LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           W P EV +  D A    LW++  G     + +   NLG+    +S+      + +    S
Sbjct: 47  WRPEEVNLTTDKAQFDKLWETNRGHL---QTIFTDNLGYQILMDSVQGRAPAIVLASICS 103

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           +     +++   F E +HS ++ +II +L  D  ++F+       I A+A    +    L
Sbjct: 104 DVALETWIMTWTFSETIHSRSYTHIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLL 163

Query: 170 --------SSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217
                   +       T    +E  + L++  + +   E + FY  F    +     K M
Sbjct: 164 HKLIILYQADKIRGVATPGQLREVKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIM 223

Query: 218 VGIAEQYQYIMRDESLH----------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            G  +  Q+I RDE+LH          +N GID     +I        + ++++  M  E
Sbjct: 224 EGNMKIMQFIARDENLHHQGTRYILQQMNKGIDGTEWREI------ALDCKEEAEAMFLE 277

Query: 268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325
               E A+A      G   GL      +++ +        +GL  P+ +   +P PW+++
Sbjct: 278 VRAQERAWATYVYRNGHPDGLTTDLVHEFIDYQLVPAMKNVGLNCPIERPKRHPLPWVNK 337


>gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 27/268 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   LT  E+ +  R        +++      + +    +
Sbjct: 32  TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAA 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                  L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L
Sbjct: 89  TSHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G     +       V  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMEQYRSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285
           DE++H  + I    Q  +E       E +Q+ +    E  LLE+    A   E +  G V
Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LGDERKQEIKDFAFE-LLLELYDNEAKYTEALYDG-V 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           GL     ++++ + AN+    +G E LF
Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276


>gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 20/185 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   L  +E+ +  R        +++       A+ +    P
Sbjct: 33  NFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                    +F EAVH+ ++  I ++L +  D  + +    E   +  KA+  LQ+    
Sbjct: 90  HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194

Query: 230 DESLH 234
           DE++H
Sbjct: 195 DEAVH 199


>gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 301]
 gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 2457T]
 gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 5 str. 8401]
 gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2002017]
 gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 4343-70]
 gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-671]
 gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2747-71]
 gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella
           flexneri 2930-71]
 gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri VA-6]
 gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-218]
 gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-304]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ +  N+    +G EPLF
Sbjct: 247 ADDVKAFLCYNTNKALMNLGYEPLF 271


>gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            NN W+P +VP+ +DL  W+S         + +   L    + ++++       +     
Sbjct: 27  TNNFWLPEKVPLSNDLPAWQSLAPQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165
            P     L   +F EAVH+ ++  I ++L     +D   L++   E  ++  KA   L++
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYLWS--EENAALQNKAKIVLEH 141

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +            D  ++ +  +F+     E   FY+GF   +      K+   A+  +
Sbjct: 142 YR----------ASDPLKKKIASVFL-----ESFLFYSGFWLPMYWSSRGKLTNTADLIR 186

Query: 226 YIMRDESLH 234
            I+RDE++H
Sbjct: 187 LIIRDEAVH 195


>gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 338

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W + N L     + +   L    + +  V     +++     
Sbjct: 46  TGNFWLPEKVPLSNDIKSWNTLNALEQRTTMRVFTGLTMLDTIQGTVG---AVSLIPDAL 102

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I  +L              P I     W  +     
Sbjct: 103 TPHEEAVYTNIAFMESVHAKSYSSIFQTLA-----------STPEIQDAFRWGEENEYLQ 151

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    Q   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 152 KKAKIILDYYEGDNP--QKKKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 209

Query: 230 DESLH 234
           DE++H
Sbjct: 210 DEAVH 214


>gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1]
 gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K   ++   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit
           [Escherichia coli AA86]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +        ++ I+Q + E       E +  +  +L E    E+ Y  E   +
Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQARHE-------ELKSFAFDLLLELYDNELQYTDELYAE 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 A   + ++ + AN+    +G EPLF
Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1]
 gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 115/304 (37%), Gaps = 39/304 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY--------AHET 279
            RDE++H      + N     +     K    +   +  +A  +EI +        +H  
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P   V +     E Y++F A+R    I ++PLF        +   ++   K  NFFE R
Sbjct: 241 SPAALVAI-----ENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECR 295

Query: 340 VTEY 343
            T Y
Sbjct: 296 STSY 299


>gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 104/271 (38%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+    I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIHLIIR 190

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H  +        ++ I+Q + E       E +  +  +L E    E+ Y  E   +
Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQARRE-------ELKSFAFDLLLELYDNELQYTDELYAE 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                 A   + ++ + AN+    +G EPLF
Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 320

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 25/210 (11%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W++   LT+ ER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFSRDRADWEA---LTEREREYATRLCAEFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ + +L ++  EV
Sbjct: 70  AVTKDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTD-DLHSLIEEV 128

Query: 153 PSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QI 208
           P+      +   + + L +   + T+    A Q  ++   V+  V EGM   TG+     
Sbjct: 129 PA------YVQIFCEELPAALEALTSDPSPAAQ--VRASVVYNHVVEGMLALTGYYAWHR 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           + + R   + G+ E  + I  DE  H+ +G
Sbjct: 181 ICVDR-GILPGMQELVRRIGDDERRHMAWG 209


>gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
 gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
          Length = 348

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 34/252 (13%)

Query: 82  IKRNLGFFASSESLVANNIVLA-IYRHLSNPECR-QYLLRQAFEEAVHSHTFQYIITSLG 139
           +K  L  F   E +V     +  + R    PE +    +    E AVH+  +  I   LG
Sbjct: 73  VKTVLQLFLKYELIVGEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLG 132

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           +D    +  Y++ P +  +  W       L S          D++ +  + +F +  E  
Sbjct: 133 MDTDADYVAYKDDPELMGRMEW-------LESVL-------GDEDDVLSVIIFSLT-ETA 177

Query: 200 WFYTGFAQILSL--GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
             ++ FA + S      N +  IA        DE LH     ++INQ   E      +  
Sbjct: 178 LLFSSFAILKSFQCNGYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAE----IGRPL 233

Query: 258 QQKSRTMLHEATLLEIAYAHE------TMPKGFVGLNAPSCEQYMQFIANRR---CHQIG 308
            + +R +      ++  YAHE       +P G   LN  S E Y  F+  R    C ++G
Sbjct: 234 SEDTRRVEKIRQAIDHVYAHECRIVDMAIPGG--ELNGESAENYKAFVRYRLNVWCRRLG 291

Query: 309 LEPLFKYTENPF 320
           LE  F+  + P 
Sbjct: 292 LEDHFENDDTPI 303


>gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
 gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 112/281 (39%), Gaps = 33/281 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   LT  E+ +  R        +++        +     
Sbjct: 27  TSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGLTLLDTIQNTVGAPTLIDDAI 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167
            P         +F EAVH+ ++  I ++L    D  + +    E  ++  KA+  L + +
Sbjct: 84  TPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYRWSEENRALQKKADIILAHYR 143

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           +             D   L+   V  V  E   FY+GF   +      K+   A+  + I
Sbjct: 144 S-------------DDPLLKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 188

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285
           +RDE++H  + I    Q  +E     T+  Q KS    +L +    E+ Y  E      V
Sbjct: 189 IRDEAVH-GYYIGYKFQKGLEQVSA-TRRQQVKSFAFDLLQDLYDNEVRYTEELYDD--V 244

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           G      + ++ + AN+    +G E LF       P M+EV
Sbjct: 245 GW-TEDVKTFLHYNANKALMNLGYEALFP------PSMAEV 278


>gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 115/276 (41%), Gaps = 43/276 (15%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W S N   + ++L I+   G            ++  I   L 
Sbjct: 27  TSNFWLPEKVPLSNDIPSWNSLNA--EQQQLTIRVFTGL----------TLLDTIQNTLG 74

Query: 110 NPECRQYLLRQ---------AFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAK 158
            P      L Q         +F EAVH+ ++  I ++L    D    +    +   +  K
Sbjct: 75  APALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSEDNAPLQGK 134

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A   LQ+              D  ++ +  +F+     E   FY+GF   +      K+ 
Sbjct: 135 AQIILQHYY----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLT 179

Query: 219 GIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
             A+  + I++DE++H  + G      ++ E P L  +E QQ +  +L E    E+AY  
Sbjct: 180 NTADLIRLIIKDEAVHGYYIGYKYQKALEKETP-LRKEELQQFAIELLLELYENELAYT- 237

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           E +  G VG      ++++ + AN+    +G E LF
Sbjct: 238 EALYAG-VGWQ-EDVKKFLHYNANKALMNLGYEALF 271


>gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           tumefaciens str. C58]
 gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           tumefaciens str. C58]
          Length = 324

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 33/271 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W +   L  +E+ +  R        +++      + +    +
Sbjct: 32  TSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGLTLLDTIQNGVGAVRLMPDSA 88

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    +
Sbjct: 89  TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAI 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
               + +G  D  ++ +  +F+     E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 IMREYDSG--DPLKKKIASVFL-----ESFLFYSGFYLPMFWSSRAKLTNTADLIRLIIR 195

Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DE++H           +D + + +        +E +  +  +L E    E  Y  E +  
Sbjct: 196 DEAVHGYYIGYKFQRALDRLGEAQ-------RQEIKDFAFDLLLELYDNEAKYT-EDLYD 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           G VGL     +Q++ + AN+    +G E LF
Sbjct: 248 G-VGLTE-DVKQFLHYNANKALMNLGYEALF 276


>gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1]
 gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1]
 gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1]
 gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1]
 gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLSGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424]
 gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 24/274 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +  H  +   
Sbjct: 25  WVDTEFKVSKDIKSWNED--LNDKERDAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170
           +         E +H+ ++  I TSL   +   + +   VP+   +  KA     Y   L 
Sbjct: 83  QAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKAQLIESYYLKLF 142

Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            P   T           DL+   V  V  E   FY+GF   L L    K+    E  + I
Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSGEIIRKI 192

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           + DE++H +F G D     K   P    K   ++  T+L +    E+ Y  +    G +G
Sbjct: 193 LLDETIHGSFTGFDAQEIFKTLTPEEQEKA-NKEMYTLLLDLYENELKYTKDIY--GEIG 249

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
           L     + Y+++ ANR    +G    F+  E NP
Sbjct: 250 L-FEEVKDYVEYNANRALANLGYPGYFEDKEINP 282


>gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1]
          Length = 312

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 15/189 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D A W+S   LTD ER    R    F + E  V  +I   +A  R     
Sbjct: 32  WDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H+  F+  + ++G+ E +L     E+P+      +   + + L +
Sbjct: 89  GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE-DLQGYLDELPA------YCQMFYEELPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQYIMR 229
                 T  +    ++    +  V EGM   TG+     + + R   + G+ E  + I  
Sbjct: 142 SLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDR-GILPGMQELVRRIGD 200

Query: 230 DESLHLNFG 238
           DE  H+ +G
Sbjct: 201 DERRHMAWG 209


>gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 314

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 33/282 (11%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    +   W   + LTD ER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   +A  R         YL + AFEEA H+  F+  + S+G+  G+L     ++
Sbjct: 70  AVTEDIQPFMAAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDL 128

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           PS   +  +  +  + LS  + TT    A Q  ++    +  + EGM   TG+     + 
Sbjct: 129 PSY--RQMFYDELPECLS--ALTTDPSPAAQ--VRASVTYNHIVEGMLALTGYYAWHKIC 182

Query: 213 RANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
               ++ G+    ++I  DE  H+ +G     +    N   WT  F+++   +       
Sbjct: 183 VERGILPGMQRLVRHISDDERRHMAWGTFTCRRHVAANDANWTV-FEERMNEL------- 234

Query: 272 EIAYAHETMPKGFVGLNAP-----SCEQYMQFIANRRCHQIG 308
            I  A +    GF     P     S E++M + +++   + G
Sbjct: 235 -IPLALQLTQDGFALYGDPMPFDLSVEEFMTYSSDKGMRRFG 275


>gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599]
 gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPE 112
           W P ++    D   + + N    +E L   R  GF    E++  + + ++ +       E
Sbjct: 34  WNPQDIDFTQDREDYANMNPEQKEETL--GRIAGFLGGEEAVTLDLLPLIMVIAEEGRLE 91

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
              +L    FEEA H+  F+ ++ ++G + G+L + + +V        +   + + L + 
Sbjct: 92  EEMFLTTFLFEEAKHTEFFRLVLDNIG-ESGDLHHFHDDV--------YKRIFHEILPNA 142

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRDE 231
                T  + +   +   V+ +  EG+   TG+ A   +L +   M G+ +   Y+  DE
Sbjct: 143 LHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPGLMQGIGYLKTDE 202

Query: 232 SLHLNFGIDVINQIKIENPHLW 253
           S H+++G  ++ ++  E+ H++
Sbjct: 203 SRHISYGTFLLQRLICEHRHIY 224


>gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           CFT073]
 gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           ABU 83972]
 gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAILSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A     ++ + AN+    +G EPLF
Sbjct: 247 ADDVTAFLCYNANKALMNLGYEPLF 271


>gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 56  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332


>gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 311

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    LTDDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   +A  R         YL + AFEEA H   F+  + ++G+ + +L +   +V
Sbjct: 70  SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128

Query: 153 PS 154
           PS
Sbjct: 129 PS 130


>gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           042]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQKLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286
           DE++H  + I    Q  +       K+  Q  R  L       LLE+ Y +E      + 
Sbjct: 191 DEAVH-GYYIGYKYQKNM-------KKISQAQREELKSFAFDLLLEL-YDNELQYTDELY 241

Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
              P  +    F+   AN+    +G EPLF
Sbjct: 242 AETPWADDVKAFLCYNANKALMNLGYEPLF 271


>gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium
           avium 104]
          Length = 311

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    LTDDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   +A  R         YL + AFEEA H   F+  + ++G+ + +L +   +V
Sbjct: 70  SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128

Query: 153 PS 154
           PS
Sbjct: 129 PS 130


>gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1]
 gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1]
 gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1]
 gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1]
 gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1]
 gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1]
 gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1]
 gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1]
 gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1]
 gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1]
 gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1]
 gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1]
 gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1]
 gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1]
 gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1]
 gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1]
 gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1]
 gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1]
 gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1]
 gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1]
 gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1]
 gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1]
 gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1]
 gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1]
 gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1]
 gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1]
 gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1]
 gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1]
 gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1]
 gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1]
 gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1]
 gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1]
 gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1]
 gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1]
 gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1]
 gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1]
 gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1]
 gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1]
 gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1]
 gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1]
 gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1]
 gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1]
 gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1]
 gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1]
 gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1]
 gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1]
 gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1]
 gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1]
 gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1]
 gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1]
 gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1]
 gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1]
 gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1]
 gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1]
 gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1]
 gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1]
 gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1]
 gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1]
 gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1]
 gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1]
 gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1]
 gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1]
 gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1]
 gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1]
 gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1]
 gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1]
 gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1]
 gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1]
 gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1]
 gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1]
 gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1]
 gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1]
 gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1]
 gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1]
 gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1]
 gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1]
 gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1]
 gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1]
 gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1]
 gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1]
 gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1]
 gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1]
 gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1]
 gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1]
 gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1]
 gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1]
 gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1]
 gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1]
 gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1]
 gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1]
 gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1]
 gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1]
 gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1]
 gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1]
 gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1]
 gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1]
 gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1]
 gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1]
 gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1]
 gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1]
 gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1]
 gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1]
 gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1]
 gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1]
 gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1]
 gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1]
 gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1]
 gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1]
 gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1]
 gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1]
 gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1]
 gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1]
 gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1]
 gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1]
 gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1]
 gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1]
 gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1]
 gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1]
 gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1]
 gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1]
 gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1]
 gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1]
 gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1]
 gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1]
 gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1]
 gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1]
 gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1]
 gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1]
 gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1]
 gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1]
 gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1]
 gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1]
 gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1]
 gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1]
 gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1]
 gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1]
 gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1]
 gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1]
 gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1]
 gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1]
 gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1]
 gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1]
 gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1]
 gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1]
 gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1]
 gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1]
 gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1]
 gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1]
 gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1]
 gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1]
 gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1]
 gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1]
 gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1]
 gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1]
 gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1]
 gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1]
 gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1]
 gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1]
 gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1]
 gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1]
 gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1]
 gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1]
 gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1]
 gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1]
 gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1]
 gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1]
 gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1]
 gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1]
 gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1]
 gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1]
 gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1]
 gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1]
 gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1]
 gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1]
 gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1]
 gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1]
 gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1]
 gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1]
 gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1]
 gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1]
 gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1]
 gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1]
 gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1]
 gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1]
 gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1]
 gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1]
 gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1]
 gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1]
 gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1]
 gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1]
 gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1]
 gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++    +L       
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--ITSVFLESFLFYSGFWLQMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286
           DE++H  + I    Q  +E       +  Q+ R  L       LLE+ Y +E      + 
Sbjct: 191 DEAVH-GYYIGYKYQKNLE-------KISQEQREELKSFAFDLLLEL-YDNELQYTDELY 241

Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
              P  +    F+   AN+    +G EPLF
Sbjct: 242 AETPWSDDVKAFLCYNANKALMNLGYEPLF 271


>gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           UTI89]
 gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           APEC O1]
 gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDV---INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           DE++H  + I      NQ KI       +E +  +  +L E    E+ Y  E   +    
Sbjct: 191 DEAVH-GYYIGYKYQKNQEKISQAQ--REELKSFAFDLLLELYDNELQYTDELYAETPW- 246

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +   + ++ + AN+    +G EPLF
Sbjct: 247 --SDDVKAFLCYNANKALMNLGYEPLF 271


>gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 56  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332


>gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
 gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit; Flags: Precursor
 gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 56  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332


>gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1]
 gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 56  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332


>gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 329

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 50/268 (18%), Positives = 100/268 (37%), Gaps = 19/268 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +DL  WK+   LT+ E+    R        +++      +++     
Sbjct: 37  TGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAISLLPDSQ 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 94  TLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENENLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 143 KKAKIILSYYKGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLIIR 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      Q   +       E ++ +  ++++    EI Y  +      +G   
Sbjct: 201 DEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYDLYDNEIDYTEDLYDD--LGW-T 257

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE 317
              ++++++ AN+  + +G E LF   E
Sbjct: 258 EDVKRFLRYNANKALNNLGFEGLFPADE 285


>gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 30/267 (11%)

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
             F ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L    D+ 
Sbjct: 9   FAFLSAADDLVTENLG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQA 67

Query: 144 ELFNMYREV--PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
               + R +  P+I  K +W                 ++ D   + + F+  ++ EG++F
Sbjct: 68  RRAYVARTINHPAIRVKVDW------------LEARVRECDS--IPEKFILMILIEGVFF 113

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  L   N +    +    I RDE++H            I N +L      + +
Sbjct: 114 AASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH------TTASCYIYNNYLGGHAKPEAA 167

Query: 262 RT--MLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLFKYT 316
           R   +  EA  +EI +     P     L+     + E Y++F A+R    I ++PL+   
Sbjct: 168 RVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAP 227

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEY 343
                +   ++   K  NFFE R T Y
Sbjct: 228 APDASFPLSLMSTDKHTNFFECRSTSY 254


>gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           536]
 gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 31/270 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--ITSVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286
           DE++H  + I    Q  +E       +  Q+ R  L       LLE+ Y +E      + 
Sbjct: 191 DEAVH-GYYIGYKYQKNLE-------KISQEQREELKSFAFDLLLEL-YDNELQYTDELY 241

Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313
              P  +    F+   AN+    +G EPLF
Sbjct: 242 AETPWSDDVKAFLCYNANKALMNLGYEPLF 271


>gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
 gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E      + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISPGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows
           phytoplasma OY-M]
 gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma
           OY-M]
          Length = 350

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 32/286 (11%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P ++ +Q DLA W     LT +E+    RNL      ++   +  +  I R L   E 
Sbjct: 41  WRPEDISLQGDLAAWSE---LTLEEKTAYSRNLLVLTFLDTYQGDLGMPVIARSLEEHEH 97

Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---------REVPSITAKANW 161
           ++        A E AVH+ ++  I  S  L   E+  ++         + +  +  K   
Sbjct: 98  QKKATLNFMGAMENAVHAKSYSNIFMSY-LTNKEINQLFLWGNQQTSLQTMMQVIVKVYE 156

Query: 162 ALQ---YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           AL+   Y +  SS  F+       Q     + VF    E   FY+GF   L      K++
Sbjct: 157 ALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVF---LETWLFYSGFYYSLYFYGQGKLM 213

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
              E    I+RDES+H   G+  + ++  E   L+ K  QQ  +T L +  L++  Y  +
Sbjct: 214 QSGEIINLIIRDESIH---GV-YVGRLATEIYQLFDKPTQQTLKTWLDD--LMQQLYQAQ 267

Query: 279 T--MPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           T  +   +  LN      +++++ AN+    +G +  F  +EN  P
Sbjct: 268 TSLVHAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-SENVNP 312


>gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LF82]
 gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           +   + ++ + AN+    +G EPLF
Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271


>gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens
           YS-314]
 gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 334

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 23/270 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W +   LTD E+    R        +++      +++     
Sbjct: 42  TGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGLTLLDTIQGTVGAVSLLPDAE 98

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           +      L   AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 99  SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-----------STPQINDAFRWSEENEALQ 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + +    +   +  V+ E   FY+GF   +      K+   A+  + I+R
Sbjct: 148 RKAKIILAYYEGEDPLKRK--IASVILESFLFYSGFYLPMYWSSHAKLTNTADVIRLIIR 205

Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGL 287
           DE++H  + G      +  E+     +E ++ +  +L++    E  Y  +   + G+   
Sbjct: 206 DEAVHGYYVGYKYQKALARESAQR-QEELKEYAFDLLYDLYENETQYTEDLYDELGWT-- 262

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                ++++++ AN+  + +G E LF   E
Sbjct: 263 --EDVKRFLRYNANKAMNNLGYEGLFPADE 290


>gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1]
 gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENMG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           +   + ++ + AN+    +G EPLF
Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271


>gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +  ++ + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECAYVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDV---INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           DE++H  + I      NQ KI       +E +  +  +L E    E+ Y  E   +    
Sbjct: 191 DEAVH-GYYIGYKYQKNQEKISQAQ--REELKSFAFDLLLELYDNELQYTDELYAETPW- 246

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             +   + ++ + AN+    +G EPLF
Sbjct: 247 --SDDVKAFLCYNANKVLMNLGYEPLF 271


>gi|256389757|ref|YP_003111321.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928]
 gi|256355983|gb|ACU69480.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
            ES V   +  A+  H  +   R YL  Q  +EA H   FQ  ++ +     E    +  
Sbjct: 95  GESCVTRTLS-ALADHAPDEADRLYLCTQMADEARHVRFFQSYLSDVAGIAAEQLEPH-- 151

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILS 210
             ++  ++ + + Y   L+  +    T+  D+       V ++++ EG+    G   + +
Sbjct: 152 -GAMGGESGFGVVYDPLLTRHTAAVRTRPDDRRVWHVAVVSYHLLAEGLLAVAGLRALRA 210

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           L ++ ++  ++E    ++RDE+ H+ FG+
Sbjct: 211 LAKSCELTALSEGLANVVRDEARHVTFGL 239


>gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
 gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 25/296 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+P+ DD  +W   N L+ DER + ++ LG     ++   +  +  I   + N + 
Sbjct: 30  WVDEEIPISDDKLVW---NTLSVDERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLDY 86

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           +  L      E +H+ ++  I +SL             +  I    +W   Y        
Sbjct: 87  KPILGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDYIFDWVKTYRNYQEKLE 135

Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
              G  +   D+  L       V  E   FY+GF   L L    KMV   E    I+RDE
Sbjct: 136 LILGKYNNIHDRMSLYQALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL-LEIAYAHETMPKGFVGLNAP 290
           S+H  F + ++ Q + +   +  +E   K   ++ E    LE  Y  E      VGL + 
Sbjct: 196 SVHGVF-VGLLAQEEFDKMTMKEQELAYKEMLLILEKLYSLEREYTKELYS--CVGLES- 251

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
           + + ++++ A++    +G +  F   +   NP        D K   +FF T+   Y
Sbjct: 252 AVDVFVRYNADKALMNLGFDTKFNIKDTDVNPLVLNGLRTDTKTH-DFFSTKGNGY 306


>gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q  +E   L  + E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +  EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLDYEPLF 271


>gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           urealyticum DSM 7109]
 gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNI 100
           E +L    N W+P +VP+ +DL  W   N L+D ER +  R    L    + ++ V    
Sbjct: 37  EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGE-- 91

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           +  I   L+  E   Y    AF +AVH+ ++  + ++L              P+I    +
Sbjct: 92  ISQIQDALTEHEEAVY-TNIAFMQAVHARSYSSVFSTLS-----------STPAINDAYD 139

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKM 217
           WA++  + L     T   K     F +D     V   +   +  Y GF   L       +
Sbjct: 140 WAVK-NEVLQ----TRCRKVLVHYFGEDPLKRKVSATLLSSVLLYAGFYLPLHFSTRGVL 194

Query: 218 VGIAEQYQYIMRDESLH 234
              A+  + I+RD+++H
Sbjct: 195 SNTADMIRLILRDKAVH 211


>gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 320

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 16/184 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
           +N W+P ++P+ +D+  W+S +       + +   L    + ++ V      ++      
Sbjct: 29  SNFWLPEKIPLSNDIPAWQSLSHAEQQLTIRVFTGLTLLDTVQNTVG---APSLMPDALT 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           P     L    F EAVH+ ++  I ++L            +   + A   W+ +      
Sbjct: 86  PHEEAVLSNIGFMEAVHARSYSSIFSTLC-----------QSKDVDAAYAWSEENAPLQQ 134

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                 G   AD    +   +  V  E   FY+GF   +      K+   A+  + I+RD
Sbjct: 135 KARTVLGHYAADCPLKRK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIRD 192

Query: 231 ESLH 234
           E++H
Sbjct: 193 EAVH 196


>gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 340

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 26/275 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E     DL++WK+   L+ DE+    + L      ++      +  +  H      
Sbjct: 31  WTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLLAFHYPEEIW 87

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           R      +  E +H  ++ +I TSL   +   + +   VP     AN  L     L + +
Sbjct: 88  RGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVP-----ANKYLNKKTKLITTN 142

Query: 174 FTTGTKD--ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           +    K    D+E    +    +  E   F++GF   L L    KMV   E  + I+ DE
Sbjct: 143 YYKLLKPNPTDREIYVAM-ASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEIIRKIILDE 201

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKGFVGL 287
           ++H + G     Q+  E    ++KE Q+  R  L E        E+ YA     K  +GL
Sbjct: 202 TIHGS-GTGYAAQVIFEK---FSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK--LGL 255

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                 +Y+Q+  NR    +G E +F    NP P+
Sbjct: 256 TEDVI-RYIQYNGNRALMNLGWETVF----NPEPF 285


>gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like
           protein [Dickeya dadantii 3937]
 gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Dickeya dadantii 3937]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 29/269 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++ + +D+  W     L+D ER +  R        ++L       A+     
Sbjct: 38  TTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPALMADAL 94

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY----REVPSITAKANWALQY 165
            P     L    F EAVH+ ++  I ++L L   E+ + Y    R  P +  KA   L +
Sbjct: 95  TPHEEAVLSNIGFMEAVHARSYSAIFSTLCL-TSEVDDAYSWSERNQP-LQNKAALILSH 152

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            Q            D  ++ +  +F+     E   FY+GF   +      ++   A+  +
Sbjct: 153 YQH----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWASRGQLTNTADLIR 197

Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I+RDE++H  + G      +K        ++ Q  +  +L      E+ Y HE      
Sbjct: 198 LIIRDEAVHGYYIGYKYQQGLKRVGTQQ-QRDLQAFAYDLLQTLYDNEVDYTHELYDD-- 254

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           VG  +    +++ + AN+    +G E LF
Sbjct: 255 VGW-SDDVVKFLHYNANKALMNLGYEALF 282


>gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
 gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++ + +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F EAVH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           DE++H  + I    Q   E       +E +  +  +L E    E+ Y  E   +      
Sbjct: 191 DEAVH-GYYIGYKYQKSQEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313
           A   + ++ + AN+    +G EPLF
Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 30/201 (14%)

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E++H+ ++  I+TSL  D+  +  +++ + +     N  +QY     +  + TG     +
Sbjct: 21  ESIHAKSYGTILTSLN-DQATVDEVFKWMNN-----NPRMQYKAKRINDIYQTGNNLEKK 74

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH-------LN 236
                  V  V  EG+ +YT F   L     NK+  ++E  + ++RDES+H         
Sbjct: 75  -------VASVFLEGILYYTNFFTPLWYRGNNKLANLSEVIKLVIRDESVHGTYLGYKFQ 127

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
            G + ++  + +    W  E       +L +    E A+  E      +GL A   +Q++
Sbjct: 128 LGYNELSATEQKTFKKWMDE-------LLDDLLENEFAFTEEVYAP--IGL-AEDVKQFV 177

Query: 297 QFIANRRCHQIGLEPLFKYTE 317
            + AN+    +GLE  F   E
Sbjct: 178 HYNANKALQNMGLESRFPNAE 198


>gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 313

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 26/278 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D   W+    LT+DER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWNPADIDFSRDREDWER---LTEDERSYATRLCAEFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   +A  R         YL + AFEEA H   F+  + ++G+ E +L     +V
Sbjct: 70  SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITE-DLHYFLDDV 128

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P  T +  +  +    L+  + T     A Q  ++    +  + EGM   TG+     + 
Sbjct: 129 P--TYRTIFYEELPACLN--ALTLDPSPAAQ--VRASVTYNHMVEGMLALTGYFGWHKIC 182

Query: 213 RANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
               ++ G+ E  + I  DE  H+ +G     +    +   W     + +  M     L+
Sbjct: 183 VERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLI 242

Query: 272 EIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           E  +A ++ MP G       S +++MQ+ +++   + G
Sbjct: 243 EEGFALYDPMPFGL------SVDEFMQYASDKGMRRFG 274


>gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 20/187 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P +VP+ +D+  W +   L++ E+    R        +++       ++     
Sbjct: 40  TGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGLTMLDTIQGTVGATSLIDDAV 96

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167
            P         AF E+VH+ ++  I  +L       + F    E  ++  KA+  L + Q
Sbjct: 97  TPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFRWSEENENLQTKADIVLNFYQ 156

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   V   + E   FY+GF   +      K+   A+  + I
Sbjct: 157 -------------GDDPLKKK--VASTLLESFLFYSGFYLPMYWSSHAKLTNTADVIRLI 201

Query: 228 MRDESLH 234
           +RDE++H
Sbjct: 202 IRDEAVH 208


>gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 25

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/20 (85%), Positives = 19/20 (95%)

Query: 318 NPFPWMSEVIDLKKEKNFFE 337
           NPFPWMSE+I LKKE+NFFE
Sbjct: 2   NPFPWMSEIIALKKERNFFE 21


>gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 117/284 (41%), Gaps = 22/284 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D NQ+  +     WEK        W+ T +P+ +DL  W++   L+  E+ ++ +  G  
Sbjct: 26  DWNQVEDMIDKMTWEK---LTEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L +      +  ++             F E+VH+ ++  I ++L   + E+  ++
Sbjct: 80  TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHT-KAEIEEIF 138

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               +     N  LQY     +  + +  +DA +     + V   + E   FY+GF   L
Sbjct: 139 EWTNN-----NEFLQYKAQKINEIYQS--RDALK-----MKVASTMLETFLFYSGFFTPL 186

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +      Q   E P    +  +     +  E  
Sbjct: 187 YYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELPLEEQETLKMWVYQLCLELY 246

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             E+ Y      +  VG      + ++++ AN+    +G +PLF
Sbjct: 247 QNEVKYTQSIYDQ--VGW-TEKVKVFIRYNANKALQNLGFDPLF 287


>gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi]
 gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           T+    +T    ++D  F + L +  V  E ++    F  I  L +   M  +      I
Sbjct: 146 TMKKSQYTKKWLNSDNLFSERL-IGLVCIEQIFLSASFFSIFWLKKRGLMSALTISNDLI 204

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE  H NF   + + +K       +K  Q    +++ EA  +E  +   ++P   + L
Sbjct: 205 FRDEEFHSNFLYSLYSNLK------HSKLPQTLVHSLVKEAVDIEKEFI-TSLPTELIEL 257

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +  S  QY++ +++      G E LF +TEN   W+ +++
Sbjct: 258 DRNSMYQYVEVVSDNILISFGYEKLF-HTENQCSWIQDML 296


>gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis
           T2Bo]
 gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative
           [Babesia bovis]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 104/271 (38%), Gaps = 43/271 (15%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---FA 90
           + P+ Y   W  Y    N+ W   +    ++   + S   L  + R ++ + + +     
Sbjct: 33  MFPIHYDALWAMYKEIENSFWAAEDFRFANERDTYSS---LPTELRQLVVKLISYHNRLD 89

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            SE      I L +      PE R +   Q   E +HS  F  + +++    G +     
Sbjct: 90  RSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGIMSSAI---PGTI----- 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM---WFYTGFAQ 207
           +VP   AK  W    T+ L+S S                F   V+ + +    F + F  
Sbjct: 142 DVPEADAKIEW---LTRNLTSTS---------------CFYIKVILQCISKAIFRSAFGI 183

Query: 208 ILS-LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
           +   L  + K+  +      + +D S+HL F +  +  +K+       +  ++    +L+
Sbjct: 184 LADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL-------RPTRETVMELLN 236

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
            A  LE+AY    +P   +GL+     QY++
Sbjct: 237 SAYDLEMAYCRSVLPMDHMGLSEYHLSQYIK 267


>gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 37/303 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D    +  + L+ +E    +    F ++++ LV   +   +    S  
Sbjct: 32  NRWLESELVFSGD---ERDVDKLSPEELDFYRFLFTFLSAADDLVTEELG-RLSSLFSQK 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYI-ITSLGLDEGELFNMYREV---PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I +     DE    N         +I AK  W     +
Sbjct: 88  DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHNSAIQAKVRWLEARVR 147

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 148 DCPS--------------VPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLI 193

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP---KGF 284
            RDE++H      + N    +    + K   ++ + +   A  +EIA+     P   +  
Sbjct: 194 SRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQLFSNAVEIEIAFIKAKAPANSRIL 249

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRV 340
            G    + E Y++F A+R    IG   LF   E P    FP    ++  +K  NFFE R 
Sbjct: 250 DGAAIAAIESYVRFSADRLLKLIGEPALFD--EPPPNDGFPL--RLMSTEKHTNFFECRS 305

Query: 341 TEY 343
           T Y
Sbjct: 306 TAY 308


>gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           dysenteriae Sd197]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 27  TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F E VH+ ++  I ++L            +   + A   W+ +     
Sbjct: 84  TPHEEAVLSNISFMEVVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENALLQ 132

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   +  V  E   FY+GF   +      K+   A+  + I+R
Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  + I    Q  +E       E Q++         LLE+ Y +E      +    
Sbjct: 191 DEAVH-GYYIGYKYQKSLEK----ISEAQREELKSFAFDLLLEL-YDNELQYTDELYAET 244

Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLF 313
           P  +    F+   AN+    +G EPLF
Sbjct: 245 PWADDVKTFLCYNANKALMNLGYEPLF 271


>gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 5216-82]
          Length = 319

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA--IYRH 107
            +N W+P +VP+ +D+    ++  LT  E+ +  R        ++L   N++ A  +   
Sbjct: 27  TSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGLTLLDTL--QNVIGAPSLMPD 81

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
              P     L   +F EAVH+ ++  I ++L            +   + A   W+ +   
Sbjct: 82  ALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAP 130

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D    +   +  V  E   FY+GF   +      K+   A+  + I
Sbjct: 131 LQRKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLI 188

Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +RDE++H  + I    Q  +E  P    +E +  +  +L E    E+ Y  E   +    
Sbjct: 189 IRDEAVH-GYYIGYKYQKNMEKIPLGQREELKSFAFDLLLELYDNELQYTDELYAETPW- 246

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313
             A   + ++ + AN+    +G EPLF
Sbjct: 247 --ADDVKAFLCYNANKALMNLGYEPLF 271


>gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
 gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
          Length = 301

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 25/267 (9%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P +VP+ +D+  W++   +     + +   L    + ++++      ++     
Sbjct: 6   TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 62

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P     L   +F E VH+ ++  I ++L            +   + A   W+ +     
Sbjct: 63  TPHEEAVLSNISFMEVVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENALLQ 111

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    + +   ++  E   FY+GF   +      K+   A+  + I+R
Sbjct: 112 RKAQIIQQHYRGDNPLKKKIASVFI--ESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 169

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  + I    Q  +E       E Q++         LLE+ Y +E      +    
Sbjct: 170 DEAVH-GYYIGYKYQKSLEK----ISEAQREELKSFAFDLLLEL-YDNELQYTDELYAET 223

Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLF 313
           P  +    F+   AN+    +G EPLF
Sbjct: 224 PWADDVKTFLCYNANKALMNLGYEPLF 250


>gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 56  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E  HS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 112 DILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332


>gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           radiobacter K84]
 gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter
           K84]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 122/279 (43%), Gaps = 49/279 (17%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF--------ASSESLVANNIV 101
             N W+P +VP+ +D+  W +     ++++L I+   G            + +L+ ++I 
Sbjct: 37  TGNFWLPEKVPLSNDIPSWAALK--PEEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSIT 94

Query: 102 L---AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
               A+Y ++S            F EAVH+ ++  I ++L     ++ + YR      ++
Sbjct: 95  SHEEAVYSNIS------------FMEAVHARSYSSIFSTL-CSTPDIDDAYR-----WSE 136

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
            N  LQ    L    +  G  D  +  +  +F+     E   FY+GF   +      K+ 
Sbjct: 137 ENEHLQRKSALILEQYRNG--DPLKRKIASVFL-----ESFLFYSGFYLPMYWSSRAKLT 189

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----A 274
             A+  + I+RDE++H  + I    Q  +E     ++E +Q+ +    +  LLE+    A
Sbjct: 190 NTADMIRLIIRDEAVH-GYYIGYKFQRGLER---LSEEGRQEIKDFAFD-LLLELYDNEA 244

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
              E +  G VGL     ++++ + AN+    +G E LF
Sbjct: 245 KYTEALYDG-VGLTE-DVKKFLHYNANKALMNLGYEALF 281


>gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I  K +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRTKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
 gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
          Length = 336

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 40/281 (14%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W++   L+  ER ++ +  G     ++L +    
Sbjct: 38  TWEK---LTEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGLTLLDTLQSEEGA 91

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
             +   +             F E+VH+ ++  I ++L        N   E+  I      
Sbjct: 92  ALMKDFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTL--------NTKAEIEEIFEWTNT 143

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  LQY     +  + +G           +     + E   FY+GF   L     NK+  
Sbjct: 144 NEQLQYKAKKINEIYQSGHG-------LKIKAASTMLETFLFYSGFFTPLYYLGNNKLAN 196

Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +AE  + I+RDES+H          G + + + +     +W  E         +EA   +
Sbjct: 197 VAEIIKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMD--LYQNEAKYTQ 254

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             Y         VG      + ++++ AN+    +G +PLF
Sbjct: 255 SLYDQ-------VGW-TEKVKVFIRYNANKALQNLGFDPLF 287


>gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
          Length = 340

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 26/275 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E     DL++WK+   L+ DE+    + L      ++      +  +  H      
Sbjct: 31  WTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLLAFHYPEEIW 87

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           R      +  E +H  ++ +I TSL   +   + +   VP     AN  L     L + +
Sbjct: 88  RGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVP-----ANKYLNKKTKLITTN 142

Query: 174 FTTGTKD--ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           +    K    D+E    +    +  E   F++GF   L L    KMV   E  + I+ DE
Sbjct: 143 YYKLLKPNPTDREIYVAM-ASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEIIRKIILDE 201

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKGFVGL 287
           ++H + G     Q+  +    ++KE Q+  R  L E        E+ YA     K  +GL
Sbjct: 202 TIHGS-GTGYAAQVIFDK---FSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK--LGL 255

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                 +Y+Q+  NR    +G E +F    NP P+
Sbjct: 256 TEDVI-RYIQYNGNRALMNLGWETVF----NPEPF 285


>gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1]
 gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain)
           [Mycobacterium gilvum PYR-GCK]
 gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 24/261 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D A W+S   L+  ER    R    F + E  V  +I   +A  R     
Sbjct: 32  WDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H+  F+  + ++G+ E +L     ++P+      +   + + L +
Sbjct: 89  GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE-DLQGYLDDLPA------YRQMFYEELPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQYIMR 229
                 T  + Q  ++    +  V EGM   TG+     + + R + + G+ E  + I  
Sbjct: 142 SLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDR-HILPGMQELVRRIGD 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL-LEIAYA-HETMPKGFVGL 287
           DE  H+ +G     +    +   WT  F+ +   ++  A    + A+A ++ +P G    
Sbjct: 201 DERRHMAWGTFTCRRHVAADDANWTV-FEDRMNELIPLALQNTDDAFALYDEIPFGL--- 256

Query: 288 NAPSCEQYMQFIANRRCHQIG 308
              + E++ Q+ A++   + G
Sbjct: 257 ---TIEEFQQYAADKGMRRFG 274


>gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 56/302 (18%), Positives = 110/302 (36%), Gaps = 26/302 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W  ++       + +   L    + +  V     +++     
Sbjct: 30  TGNFWLPEKIPLSNDIQSWSRRSEEEQKMAMHVFTGLTLLDTVQGTVG---AISLIPDAV 86

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            P         AF E+VH+ ++  I ++L                I    +W     Q  
Sbjct: 87  TPHEEAVYTNIAFMESVHAKSYSQIFSTLA-----------NTKQIDEAFHWGATNEQLQ 135

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     + D    +   V  V+ E   FY+GF   +      ++   A+  + I+R
Sbjct: 136 KKAQIIMSYYEGDDP--EKRKVASVLLESFLFYSGFYLPMRYSSHGELTNTADIIRLIIR 193

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287
           DE++H  + I    Q  +E      + E +  + ++L E    E  Y  +   P G+   
Sbjct: 194 DEAVH-GYYIGYKYQKAVEKLSAERQAELKDYTFSLLMELYDNEEVYTEDIYDPVGWT-- 250

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                + ++++ AN+    +G E LF       NP    S   +  +  +FF    + Y 
Sbjct: 251 --EDVKVFLRYNANKALMNLGYEGLFPQEATQVNPAILASLSPNADENHDFFSGSGSSYV 308

Query: 345 QG 346
            G
Sbjct: 309 MG 310


>gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D    +  + L++ E    +    F ++++ LV  N+   +       
Sbjct: 23  NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +  +    Y       P+I AK +W     +
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
             +S              + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      +       +     K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYTNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +  +    E Y++F A+R    I ++PLF        +   ++   K  NFFE R T Y
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299


>gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 33/275 (12%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  WK    +T  E+    R        +++      +++     
Sbjct: 37  TGNFWLPEKIPVSNDIQSWKK---MTPQEQQATMRVFTGLTLLDTIQGTVGAISLVPDAE 93

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
                      +F E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 94  TMHEEAVYTNISFMESVHAKSYSNIFMTLAT-----------TPQINEAFRWSEENENLQ 142

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                       D    +   V   + E   FY+GF   + L    K+   A+  + I+R
Sbjct: 143 RKAKIIMSYYRGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200

Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           DES+H  +       G+  +++ K        +E++  +  ++++    E+ Y  +    
Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEEK-------QQEYKDYTFDLMYDLYENELEYTEDIYDD 253

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +G      ++++++ AN+  + +G E LF   E
Sbjct: 254 --LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDE 285


>gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 305

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 53/323 (16%)

Query: 44  EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +KYL  C+             N W P++VP+Q D+      + L + +    K    F  
Sbjct: 5   KKYLYTCDHIGFLELTKETWKNRWFPSQVPLQGDVC---CVDLLNERDIEFYKFLFTFLG 61

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMY 149
            +E LV  NI   +     + +   Y   Q   E +H   +  I+  L  +   E+++  
Sbjct: 62  MAEKLVNINIE-DLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYA 120

Query: 150 REVPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            ++ +  A   K  W              T T D  ++ L      +++ EG++F + F 
Sbjct: 121 HDIMNDCALQEKIRWL---------NGRVTETSDKAEKIL-----LFLLVEGIFFISSFF 166

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRT 263
            I  L     M GI     YI RDE LH +    + N +   +   P  W  E       
Sbjct: 167 SIGLLRVRGIMNGICLANDYIARDEMLHTSAAALLYNTMTKPSERPPEKWIYE------- 219

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPF 320
           +  EA  +E  +    +  G   +N     Q++Q  A+R    I L P++        P 
Sbjct: 220 LFREAVEVEFKFISAKV-HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVPPANCPL 278

Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343
            + S      K  NFFE   ++Y
Sbjct: 279 VYTSST----KSVNFFERDNSDY 297


>gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 47/320 (14%)

Query: 44  EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +KYL  C+             N W P++VP+Q D+      + L + +    K    F  
Sbjct: 5   KKYLYTCDHVGFLELTKETWKNRWFPSQVPLQGDVC---CVDMLNERDLEFYKFLFTFLG 61

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            +E LV  NI   +     + +   Y   Q   E +H   +  I++ L   +  +  +Y 
Sbjct: 62  MAEKLVNINIE-DLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLF--KNNITEVYS 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
               I   +  ALQ      +   T  +  A++       + +++ EG++F + F  I  
Sbjct: 119 YACDIMNDS--ALQEKLKWLNGRVTEASDKAEK------ILLFLLVEGIFFISSFFSIGL 170

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLH 266
                 M GI     YI RDE LH +    + N +        TK  ++ S      +  
Sbjct: 171 FRVRGIMNGICLANDYIARDEMLHTSAAALLYNTM--------TKSSERPSEDWIYKLFR 222

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--EN-PFPWM 323
           EA  +E  +       G   +N     Q++Q  A+R    I L P++     EN P  + 
Sbjct: 223 EAVEVEFKFI-AAKGHGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPLAYT 281

Query: 324 SEVIDLKKEKNFFETRVTEY 343
           S      K  NFFE   ++Y
Sbjct: 282 SST----KSVNFFERDNSDY 297


>gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 20/259 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D A W+    LT+DER    R    F + E  V  +I   ++  R     
Sbjct: 24  WNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQPFMSAMRVEGRL 80

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H   F+  + ++G+ E +L     ++P  T +  +  +    L+ 
Sbjct: 81  GDEMYLTQFAFEEAKHVQVFRMWLDAVGVTE-DLHQYLDDIP--TYRTIFYEELPDCLN- 136

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230
            + +     A Q  ++    +  + EGM   TG+     +     ++ G+ E  + I  D
Sbjct: 137 -ALSVDPSPAAQ--VRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRRIGDD 193

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGLNA 289
           E  H+ +G     +    +   W     + +  M     L+E  ++ ++ MP G      
Sbjct: 194 ERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL----- 248

Query: 290 PSCEQYMQFIANRRCHQIG 308
            S +++MQ+ A++   + G
Sbjct: 249 -SVDEFMQYAADKGMRRFG 266


>gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 331

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 21/267 (7%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W + N +     + +   L    + +  V     +++       
Sbjct: 41  NFWLPEKVPLSNDVQSWGTLNEVERQTTMRVFTGLTMLDTIQGTVG---AVSLINDAQTM 97

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    +F E+VH+ ++  I  +L              P I     W+ +     + 
Sbjct: 98  HEEAVYTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEHLQNK 146

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                   + D    Q   +  V+ E   FY+GF   +      K+   A+  + I+RDE
Sbjct: 147 AKIILDFYEGDDP--QKRKIASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204

Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           S+H  + I    Q  +E      + E +  +  +L E    E  Y  +   +  +G    
Sbjct: 205 SVH-GYYIGYKYQRAMEQESAARQEELKDHTFDLLLELYDNEAQYTEDLYDE--LGW-TE 260

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317
             ++++++ AN+  + +G E LF   E
Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287


>gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
 gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
          Length = 155

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   W+ Y  A  + W   E+ +  DL  W   N + D+ER  I   L FFA+S+
Sbjct: 85  LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDW--NNRMNDNERHFISHVLAFFAASD 142

Query: 94  SLVAN 98
            +  N
Sbjct: 143 GIHEN 147


>gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +DL  W   N L+ D + +I R        +++ A+   +A  ++    
Sbjct: 49  NFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTD 105

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-----ALQYT 166
             +      AF  AVH+ ++           G +F+       I    NW     ALQ  
Sbjct: 106 HEQAIYANFAFMVAVHARSY-----------GTIFSTLCNSDQIDEAHNWVINNEALQAR 154

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                P +T       +       V   +  G   Y GF     L   NK+   A+  + 
Sbjct: 155 AKALIPYYTGNDPLKSK-------VAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRL 207

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 208 ILRDKVIH 215


>gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners AB-1]
 gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +DL  W   N L+ D + +I R        +++ A+   +A  ++    
Sbjct: 47  NFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTD 103

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-----ALQYT 166
             +      AF  AVH+ ++           G +F+       I    NW     ALQ  
Sbjct: 104 HEQAIYANFAFMVAVHARSY-----------GTIFSTLCNSDQIDEAHNWVINNEALQAR 152

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                P +T       +       V   +  G   Y GF     L   NK+   A+  + 
Sbjct: 153 AKALIPYYTGNDPLKSK-------VAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRL 205

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 206 ILRDKVIH 213


>gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 350

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 28/284 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P ++ +Q DLA W     LT +E+    RNL      ++   +  +  I R L   E 
Sbjct: 41  WRPEDISLQGDLAAWSE---LTIEEKTAYSRNLLVLTFLDTYQGDLGMPIIARSLEEHEH 97

Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
           ++        A E AVH+ ++  I  S   ++   +LF    +  S+       ++  + 
Sbjct: 98  QKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEINQLFLWGNQQKSLQTMMQVIVKVYEA 157

Query: 169 LSSPSFTTGTKDADQEFLQDLF--------VFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           L    +    K    +F++  F           V  E   FY+GF   L      K++  
Sbjct: 158 LEDQIYLK--KQTSLQFIELEFKKTQWKAMAVSVFLETWLFYSGFYYPLYFYGQGKLMQS 215

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET- 279
            E    I+RDES+H   G+  + ++  E   L+ K  +Q  +T L +  L++  Y  +T 
Sbjct: 216 GEIINLIIRDESIH---GV-YVGRLATELYQLFDKPTKQTLKTWLDD--LMQQLYQTKTS 269

Query: 280 -MPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            +   +  LN      +++++ AN+    +G +  F  +EN  P
Sbjct: 270 LVNAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-SENVNP 312


>gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I RN       +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF  A+H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 119/305 (39%), Gaps = 41/305 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D    +  + L+ +E    +    F ++++ LV   +   +    S  
Sbjct: 32  NRWLESELVFSGD---ERDVDKLSPEELDFYRFLFTFLSAADDLVTEELG-RLSSLFSQK 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYI-ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           +   Y + Q   E VHS  +  I +     DE             TA+ N+      T+ 
Sbjct: 88  DILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-------------TARRNYV---ANTVH 131

Query: 171 SPSFTTGTK-----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           S +     +       D   + + F+  ++ EG++F   FA I  L   N +    +   
Sbjct: 132 SSAIQPKVRWLEARVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSND 191

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP---K 282
            I RDE++H      + N    +    + K   ++ + +   A  +EIA+     P   +
Sbjct: 192 LISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQLFSNAVEIEIAFIKAKAPANSR 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFET 338
              G    + E Y++F A+R    IG   LF   E P    FP    ++  +K  NFFE 
Sbjct: 248 ILDGAAIAAIESYVRFSADRLLKLIGEPALFD--EPPPNDGFPL--RLMSTEKHTNFFEC 303

Query: 339 RVTEY 343
           R T Y
Sbjct: 304 RSTAY 308


>gi|325002633|ref|ZP_08123745.1| ribonucleotide reductase [Pseudonocardia sp. P1]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 42/218 (19%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
           A +  W  TE+   +D A W +   LT+ E   +   +  F  +E+ VA    L  Y+  
Sbjct: 14  AASLQWDETEIDFSEDRAAWPA---LTEWEHERVLGLIAGFCIAETSVAGQ--LGSYQAA 68

Query: 109 SNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEG----------------ELFNMYRE 151
           +  +  +   R QA +EA H+  F  + + +    G                EL +++  
Sbjct: 69  AREDSMEAAFRAQARDEARHARFFDRVASDVAGIPGANPAARQDVLRAQVGAELVDLFEH 128

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
               TA+        Q    P+  TG           + ++++V EG+    G   +L  
Sbjct: 129 RLPATAR--------QLAEDPAGLTGA----------VGLYHMVIEGVVLLAGQHAMLDT 170

Query: 212 --GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
             G +  + G+ +  + ++RDE  H+ FG  ++    I
Sbjct: 171 LEGLSRPLPGVRKGMELVLRDERWHIGFGSRIVQCADI 208


>gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 350

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 49/256 (19%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHL 108
             N W+P +VP+ +D++ W   N L DD R L +K   G       L   + V A    +
Sbjct: 42  TGNFWLPEKVPLSNDISSW---NSLPDDLRQLTVKIFTG-------LTLLDTVQATVGEV 91

Query: 109 SN-PECRQ-----YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
           S  P+ R           AF ++VH+ ++  + ++L              P IT    WA
Sbjct: 92  SQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLC-----------STPEITDAYGWA 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            Q   T+     TT  K           V   +   +  Y GF   L L    K++  A+
Sbjct: 141 TQ--NTVLQRRATTVMKHYYARDPLKRKVAATLLSSLLLYAGFYLPLWLSCRAKLMNTAD 198

Query: 223 QYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             + I+RD+++H  +       G+D   + K         E Q+ + +++ E   LE  Y
Sbjct: 199 MIRLILRDKAVHGYYSGYKFQRGLDAHPERK--------NELQEFTYSLVDELLNLEKIY 250

Query: 276 AHETMPKGFVGLNAPS 291
           + E     + G+ AP+
Sbjct: 251 SGEL----YGGITAPN 262


>gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
 gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS 154
           P+
Sbjct: 129 PA 130


>gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
          Length = 323

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 28  LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 78

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 79  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 137

Query: 153 PS 154
           P+
Sbjct: 138 PA 139


>gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
 gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 112/257 (43%), Gaps = 34/257 (13%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           +Y     PE  +  +  A  E  H++ + +++  LGL EG       E   +  +A  AL
Sbjct: 75  VYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGL-EGRFARYLEEATPLRDRAG-AL 132

Query: 164 QYTQTLSSPSFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221
           +             +K+A  +E+   L +F    E +  ++ F  +++L R AN+  GIA
Sbjct: 133 E--------GVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRANRFKGIA 184

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              +   ++E++H  FG++++  ++ E P L+ + F ++   +L  A   E+  A E + 
Sbjct: 185 NAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEE---VLRAAQ--ELFRAEEALV 239

Query: 282 K-GFVGLNAP--SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID---------- 328
              F G + P    E+ ++F+ +R    + L  L      PF    EV+           
Sbjct: 240 DWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGL----PGPFQVRDEVLKDTAWFALELL 295

Query: 329 LKKEKNFFETRVTEYQQ 345
             K+ +FF  R   Y +
Sbjct: 296 ADKDVDFFNKRSVAYAR 312


>gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 20/163 (12%)

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYRE 151
           S PE   ++   AF E +HS ++ +II ++  D   +F+                  Y E
Sbjct: 1   SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +  +T+  +   + T T++  +     ++  ++    L       E + FY  FA   + 
Sbjct: 61  LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAF 119

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252
                M G A+  + I RDE+LHL     ++N ++  +++P +
Sbjct: 120 AERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEM 162


>gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 276

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 51  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 105

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 106 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 158

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 159 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 211

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 212 RDKVIH 217


>gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
 gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB
           [Mycobacterium tuberculosis H37Ra]
 gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS 154
           P+
Sbjct: 129 PA 130


>gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage K]
 gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K]
 gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage 812]
 gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 41/322 (12%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           WE+ +S     W P E  +  DL+ W   N LT+ E+   K+ L      ++      + 
Sbjct: 33  WEQGISQF---WTPEEFDVSRDLSSW---NSLTESEKNTYKKVLAGLTGLDTKQGGEGMN 86

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAK 158
            +  H   P+ +         E +H+ ++ +I T+L L   E    L     E   +  K
Sbjct: 87  LVSYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTL-LSNKETSYLLDTWVEENDFLKVK 145

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A +   Y   L  P+ T   +   +       V     E   FY+GF   L L    +M 
Sbjct: 146 AQFIGYYYDQLLKPNPTIFDRYMAK-------VASAFLESALFYSGFYYPLLLAGRGQMT 198

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
                   I +DE+ H +  + +  Q    + +L T+E ++++    +E  LL+I Y +E
Sbjct: 199 QSGAIIYKITQDEAYHGS-AVGLTAQY---DYNLLTEEEKKQADKETYE--LLDILYTNE 252

Query: 279 TMPKGFVGLNAP-----SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-----ID 328
                   L  P         Y+Q+  NR    +G E  F    NP P+   V     +D
Sbjct: 253 VAYTH--SLYDPLELSEDVINYVQYNFNRALQNLGREDYF----NPEPYNPIVENQTNVD 306

Query: 329 LKKEKNFFETRVTEYQQGAELK 350
             +  +FF  +  +Y++   +K
Sbjct: 307 RLRNVDFFSGKA-DYEKSTNIK 327


>gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 130

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIV 101
            +V  N+V
Sbjct: 95  GIVNENLV 102


>gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P  +    D A W++   L+D ER+ + R    F + E  V  +I   +A  R     
Sbjct: 32  WDPANIDFSRDSADWEA---LSDRERVYVTRLCAGFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
               YL + AFEEA H+  F+  + ++G+ + +L +   + P+
Sbjct: 89  GDEMYLTQFAFEEAKHTQAFRLWLDAVGVRD-DLHSFLDQTPA 130


>gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 134

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIV 101
            +V  N+V
Sbjct: 95  GIVNENLV 102


>gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
 gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 29/228 (12%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206
           P+      A+    L       SP+                  +  + EGM   TG+   
Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             + + RA  + G+ E  + I  DE  H+ +G     +    +   WT
Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT 225


>gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 111

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIV 101
            +V  N+V
Sbjct: 95  GIVNENLV 102


>gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
 gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 29/228 (12%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206
           P+      A+    L       SP+                  +  + EGM   TG+   
Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             + + RA  + G+ E  + I  DE  H+ +G     +    +   WT
Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT 225


>gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
 gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS 154
           P+
Sbjct: 129 PA 130


>gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           bovis AF2122/97]
 gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB
           [Mycobacterium tuberculosis F11]
 gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CDC1551A]
 gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis W-148]
 gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 4207]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS 154
           P+
Sbjct: 129 PA 130


>gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
 gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P ++P+ +D+  W +   LT  E+ +  R        +++        +      P
Sbjct: 32  NFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDALTP 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169
                L    F EAVH+ ++  I ++L L  D  E +    E P +  KA   L+Y Q  
Sbjct: 89  HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYRWSEENPYLQKKAEIILRYYQ-- 146

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                       D++ L+   +  V  E   FY+GF
Sbjct: 147 ------------DEDPLKKK-IASVFLESFLFYSGF 169


>gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206
           P+      A+    L       SP+                  +  + EGM   TG+   
Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             + + RA  + G+ E  + I  DE  H+ +G
Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWG 209


>gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 122

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  IK  L FFA+S+
Sbjct: 38  IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94

Query: 94  SLVANNIV 101
            +V  N+V
Sbjct: 95  GIVNENLV 102


>gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
 gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
          Length = 314

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS 154
           P+
Sbjct: 129 PA 130


>gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 311

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++    D A W+    L+DDER    R    F + E 
Sbjct: 19  LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69

Query: 95  LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +I   ++  R         YL + AFEEA H+  F+  + ++G+ E +L     ++
Sbjct: 70  AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128

Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206
           P+      A+    L       SP+                  +  + EGM   TG+   
Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             + + RA  + G+ E  + I  DE  H+ +G
Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWG 209


>gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G     +++ + + V
Sbjct: 21  TWEKL---TEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            AI   +  P     L    F E+VH+ ++  I ++L 
Sbjct: 75  EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLN 112


>gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
 gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
          Length = 306

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 11/210 (5%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           WE+       HW   ++    D   W  +    ++ER      L  F   E  VA  +  
Sbjct: 43  WER------QHWAVQDLDFTQDKLDWHER--FDEEERFARMYGLSAFFIGEQRVAAELG- 93

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
            + R     + R +L  Q  +EA H   F    + + +   E         S      + 
Sbjct: 94  PLMRAAPQEDMRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLNPEFG 153

Query: 163 LQYTQTLSSPSFTTGTKDADQEFL-QDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGI 220
           + + + L S      T+  D E L + + ++++V EGM   TG   I+    R   + G 
Sbjct: 154 VLFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGTLPGF 213

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            E +  + RDE  H+ FG   +  +   +P
Sbjct: 214 VEGFINVARDEHRHVAFGARFLRDMARSDP 243


>gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 40/245 (16%)

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---SSPSFTTGT 178
           FE  VH+  +  I  +L L+  E +  Y   P +  +    +++  +L     P ++ G 
Sbjct: 98  FELNVHAPFYNKINEALMLNTDEFYLAYVNDPILKER----MEFVDSLVEEDDPLYSLGA 153

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         + + EG   Y+ FA +        NK++ +     + +RDE+LH  
Sbjct: 154 --------------FSMVEGAVLYSSFAFLKHFQAKGKNKLMNVVRGINFSVRDENLHCE 199

Query: 237 FGIDVINQIKIE--------NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
            G  + N +K E        NP+L             HE  ++++ +    M     G+ 
Sbjct: 200 GGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIAEHEFRIVDMIFEKGEME----GIT 255

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEYQQGA 347
           A   + +++   N    Q+G+EP+F+ + N    W  + I+     +FF      Y +  
Sbjct: 256 AEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGINGVMFHDFFSGIGNSYNR-- 313

Query: 348 ELKWD 352
              WD
Sbjct: 314 --SWD 316


>gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ]
 gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 182 DQEFLQDLFVFYVVF---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNF 237
           DQE    +F+F++     E + F   FA   ++GR      IA   + I +DE  +H  +
Sbjct: 182 DQELYNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHAQY 241

Query: 238 GIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQ 294
           G +VI   +  E   L   + + K   +L E    E+ + +    +G    G+NA     
Sbjct: 242 GQEVIRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKLIN 301

Query: 295 YMQFIANRRCHQIGLE 310
           ++ F AN     + +E
Sbjct: 302 WVLFNANAAATFLSIE 317


>gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
 gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 121/324 (37%), Gaps = 51/324 (15%)

Query: 44  EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +KYL  C+             N W P ++ +  D+   K  + +++ +    K    F  
Sbjct: 5   KKYLYVCDHPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLG 61

Query: 91  SSESLVANNIVLAIYRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEG---- 143
            +E+LV  NI       L + EC   + Y   Q   E VH   +  I+  L  +      
Sbjct: 62  MAETLVNFNID----ELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKNNLAATW 117

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E      +  ++  K  W       L S      TK       + + +FY++ EG++F +
Sbjct: 118 EFAEAVLKDEALQKKLEW-------LESKIKMAKTKA------EKVLIFYLI-EGVFFIS 163

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKS 261
            F  I  L     M G+     YI RDE LH      + N +  K E P        +  
Sbjct: 164 SFYCIGLLRVKGVMPGVCMANDYISRDELLHTRAAALLYNTMIPKEERPS------SEWV 217

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            ++  EA  +E A+  E   K    ++      +++  A+R  + I L P +  ++ P  
Sbjct: 218 VSLFKEAVEIECAFI-EAKTKQVTFVSMDDIRAFLEATADRLLNSIEL-PRYYKSDPPQS 275

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345
                    K  +FFE   TEY  
Sbjct: 276 CPLTYTGCIKNVSFFERESTEYSS 299


>gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2]
          Length = 305

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 124/322 (38%), Gaps = 51/322 (15%)

Query: 44  EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +KYL  C+             N W P++VP+Q D+      + L + +    K    F  
Sbjct: 5   KKYLYTCDHVGFLELTKETWKNRWFPSQVPLQGDVC---CVDMLNERDLEFYKFLFTFLG 61

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            +E LV  NI   +     + +   Y   Q   E +H   +  I+  L   +  +  +Y 
Sbjct: 62  MAEKLVNINIE-DLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLF--KNNITEVYS 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
               I   +  ALQ      +   T  +  A++       + +++ EG++F + F  I  
Sbjct: 119 YACDIMNDS--ALQEKLRWLNGRVTEASDKAEK------ILLFLLVEGIFFISSFFSIGL 170

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLH 266
                 M GI     YI RDE LH +    + N +        TK  ++ S      +  
Sbjct: 171 FRVRGIMNGICLANDYIARDEMLHTSAAALLYNTM--------TKSSERPSEDWIYKLFR 222

Query: 267 EATLLEIAYAHETMPKGF-VGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT--EN-PFP 321
           EA  +E  +      KG+ V L N     Q++Q  A+R    I L P++     EN P  
Sbjct: 223 EAVEVEFKF---IAAKGYGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPLA 279

Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
           + S      K  NFFE   ++Y
Sbjct: 280 YTSST----KSVNFFERDNSDY 297


>gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 29/274 (10%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIY 105
              N W+P  +P+ +DL  W   N L DD + +I R    L    + +S + +  V  I 
Sbjct: 44  VTQNFWLPENIPVSNDLPSW---NELDDDWQQLITRTFTGLTLLDTVQSSIGD--VAQIK 98

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
             L+  E   Y    AF   VH+ ++  I ++L   E            I     W +  
Sbjct: 99  NSLTEQEQVIY-ANFAFMVGVHARSYGTIFSTLCTSE-----------QIEEAHEWVVDN 146

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               + P        AD      +     +  G   Y GF     L    K+   ++  +
Sbjct: 147 EALQARPKALIPFYTADDPLKSKIAA--ALMPGFLLYGGFYLPFYLSARGKLPNTSDIIR 204

Query: 226 YIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            I+RD+ +H NF      Q+K+   +P     E +Q    +L +   LE  Y H+ +  G
Sbjct: 205 LILRDKVIH-NFYSGYKYQLKVAKLSPEK-QAEMKQFVFDLLDKMIGLEKTYLHQ-LYDG 261

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           F GL A    ++  + A +    +G E  F   E
Sbjct: 262 F-GL-ADEAIRFSLYNAGKFLQNLGYESPFTKEE 293


>gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 50  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 104

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 211 RDKVIH 216


>gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus H10]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 50  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 104

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 211 RDKVIH 216


>gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
          Length = 335

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 45  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 206 RDKVIH 211


>gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
 gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
          Length = 335

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 45  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 206 RDKVIH 211


>gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp.
           JLS]
          Length = 312

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D A W+S + L   ER    R    F + E  V  +I   +A  R     
Sbjct: 32  WDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H+  F+  + ++G+ + +L     ++PS      +   + + L +
Sbjct: 89  GDEMYLTQFAFEEAKHTQVFRMWLDAVGMTD-DLQCYLDDLPS------YRQMFYEELPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230
                 T  +    ++    +  V EGM   TG+     +    K++ G+ E  + I  D
Sbjct: 142 SLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRRIGDD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYA-HETMPKGFVGLN 288
           E  H+ +G     +    +   W + F+ +   ++  A +  + ++A ++ +P GF    
Sbjct: 202 ERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGFAK-- 258

Query: 289 APSCEQYMQFIANRRCHQIG 308
               E++ Q+ A++   + G
Sbjct: 259 ----EEFQQYAADKGMRRFG 274


>gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti]
 gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti]
          Length = 244

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 58  EVPMQDDLALW-KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
           EV +  DLA W K K+G    E+  I   L FF +S+  +  N+V    + L   E R +
Sbjct: 142 EVDLSKDLADWEKLKSG----EKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCF 197

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              Q   E VHS  +  +I +   D  +   LFN    +P +  KA
Sbjct: 198 YGFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKA 243


>gi|284167352|ref|YP_003405630.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511]
 gi|284017007|gb|ADB62957.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511]
          Length = 296

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 52/276 (18%), Positives = 112/276 (40%), Gaps = 28/276 (10%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYR 106
           SA   HW P  + ++ D    ++ + L+  E   ++  L  F + E  V  ++  LA+  
Sbjct: 33  SAIEYHWDPAAIDVRAD---QEAVSELSRVEFTRLRGLLAQFGAGERAVTTDLAPLAVV- 88

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-Y 165
            L   + ++Y+  Q ++EA H+  F      +   E E   +   +P+      W+   Y
Sbjct: 89  -LDGSDEQRYIATQLYDEARHTELFDRYWKRVIRPEEESRGL---IPTEPMADRWSHDDY 144

Query: 166 TQTLSSPSFTTGT---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKM 217
            +     S        +D  +   +    +++  EG+   T +  + +     L    ++
Sbjct: 145 RELFDRTSNAMARLLERDTSETRARAFCHYHLTVEGILAQTAYRWVETRYSGELEAVPEL 204

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
            G+   ++Y+ RDE  H++FG+  + ++  K  +P    +   +     L E T+     
Sbjct: 205 PGLVNGFRYLRRDEGRHVSFGVTKVRKLVDKGVDPETIVETIDEL--VPLVETTI----- 257

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             + +  G +G +       +    +RR  Q+G+ P
Sbjct: 258 -DQMVRDGSIGADRNGILNRIDTARDRRLEQVGVVP 292


>gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus]
          Length = 65

 Score = 39.3 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +F+A+    ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 1   EFVADMLMLELGFNKIFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 47


>gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 287

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN---LGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 62  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 116

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166
           ++ E   Y    AF  AVH+ ++  I ++L   E   E         ++ A+A   + Y 
Sbjct: 117 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 174

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                    TG      +      V   +  G   Y GF     L    K+   A+  + 
Sbjct: 175 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 220

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 221 ILRDKVIH 228


>gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 334

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 121/316 (38%), Gaps = 41/316 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +DLA W+    LTD ER +  +        +++ A+   ++  +     
Sbjct: 44  NFWLPEKVPLSNDLADWRR---LTDLERELTMKVFTGLTMLDTVQASVGEISQIQDARTE 100

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    AF +AVH+ ++  + ++L              P I A   WA      +++
Sbjct: 101 HEEAVYTNIAFMQAVHAKSYSSVFSTLS-----------NTPDIDAAYQWA------VTN 143

Query: 172 PSFTTGTKDADQEFLQDLFV----FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                 +K   + +  D+ +       +      Y GF   L       +   A+  + I
Sbjct: 144 DILQARSKAVLKHYYGDVPLKRKAAATLLSSFSLYAGFYLPLHFASRGILTNTADMVRLI 203

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHET-MPKGF 284
           +RD+++H  +      Q  +E     T+  Q K+    +L E   LE+ Y+     P G 
Sbjct: 204 LRDKAVH-GYYSGYKFQRGVETYDTATQR-QMKAFVFELLDELYQLELRYSEALYQPLGL 261

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVT 341
                     ++++ AN+    +G    F + E  F P +   +    ++N  FF    +
Sbjct: 262 YD----DVANFIRYNANKALMNLGYPQRFNHDETAFKPEILAALTPGSDENHDFFSGSGS 317

Query: 342 EYQQG-----AELKWD 352
            Y  G     A+  WD
Sbjct: 318 AYVIGKAEDTADEDWD 333


>gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB
           (ribonucleotide reductase small chain) [Mycobacterium
           sp. MCS]
 gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp.
           KMS]
          Length = 312

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D A W+S + L   ER    R    F + E  V  +I   +A  R     
Sbjct: 32  WDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H+  F+  + ++G+ + +L     ++PS      +   + + L +
Sbjct: 89  GDEMYLTQFAFEEAKHTQVFRMWLDAVGMTD-DLQCYLDDLPS------YRQMFYEELPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230
                 T  +    ++    +  V EGM   TG+     +    K++ G+ E  + I  D
Sbjct: 142 SLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRRIGDD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYA-HETMPKGFVGLN 288
           E  H+ +G     +    +   W + F+ +   ++  A +  + ++A ++ +P GF    
Sbjct: 202 ERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGFAK-- 258

Query: 289 APSCEQYMQFIANRRCHQIG 308
               E++ Q+ A++   + G
Sbjct: 259 ----EEFQQYAADKGMRRFG 274


>gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
 gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
          Length = 377

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 21/227 (9%)

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ------TLSSPSF 174
            F E +HS ++ +II +L  +  E+F+       I A+A    +Y        TL S   
Sbjct: 112 TFFETIHSRSYTHIIRNLYNNPTEIFDSVVLDDQIMARAASICKYYDELEIKWTLYSADK 171

Query: 175 TTGTKDADQEF-LQDLFVFYV----VFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIM 228
             G    +Q + L+  F   +      E + F+  F    +     K M G ++   +I 
Sbjct: 172 IRGIATEEQLYELKKAFYLCLHTINALEAIRFFVSFINTFNFFETQKVMEGNSKIMTFIA 231

Query: 229 RDESLHLNFGIDVINQIKI--ENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG 283
           RDE+LH      +I +++   E P  W K   E ++++  +       E  +       G
Sbjct: 232 RDENLHHQGTRYMIKRLQSGEEGPE-WIKIAEECREEATNIFLATNEQEKEWCKYVYQSG 290

Query: 284 FV-GLNAPSCEQYMQFIANRRCHQIGLE--PLFKYTENPFPWMSEVI 327
              GL+      Y+ +    R +++GL+   +     NPFPW+++ +
Sbjct: 291 APQGLSVGLVSDYIDYATVPRMNELGLDSSSIVAPKRNPFPWLTKFL 337


>gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 322

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 23/268 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +  H  +   
Sbjct: 25  WVDTEFKVSKDIKSWNED--LNDKERDAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170
           +         E +H+ ++  I TSL   +   + +   VP+   +  KAN    Y   L 
Sbjct: 83  QAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANLIESYYMKLF 142

Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
            P   T           DL+   V  V  E   FY+GF   L L    K+    E  + I
Sbjct: 143 KPEVKT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEIIRKI 192

Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           + DE++H +F G D     K        K  ++  + +L +    E+ Y  +    G +G
Sbjct: 193 LLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLL-DLYENELKYTQDIY--GEIG 249

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           L     + Y+++ ANR    +G    F+
Sbjct: 250 L-YDEVKDYVEYNANRALANLGYPGYFE 276


>gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 324

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 119/272 (43%), Gaps = 33/272 (12%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA--IYR 106
              N W+P ++P+ +D+  WK    L+ +E+ +  R        ++L   NI+ A  I  
Sbjct: 31  VTTNFWLPEKIPLSNDIQSWKM---LSKEEKKLTIRIFTGLTLLDTL--QNIIGAPSIMM 85

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                  +  +    F EAVH+ ++  I ++L     E+ + Y       ++ N  LQ  
Sbjct: 86  DAKTMHEKAVISNIGFMEAVHARSYSSIFSTL-CSTTEVDSAY-----FWSEKNKFLQNK 139

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
             + S  +    K++ ++ +  +F+     E   FY+GF   +      K+   ++  + 
Sbjct: 140 VNIISKIYL--EKNSLKKKIASVFL-----ESFLFYSGFYLPMFYSSRGKLTNTSDLIRL 192

Query: 227 IMRDESLH-----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           I+RDE++H       F  D+I+  + E  ++  K+F       L+E    EI Y++ ++ 
Sbjct: 193 IIRDEAVHGYYIGYKFQKDLISLNEKEKKNI--KDFAFNLLYKLYEN---EINYSY-SLY 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           K  + +   +   ++ + AN+    +G E  F
Sbjct: 247 KDIIPI--KNIISFLNYNANKSLMNLGYEQYF 276


>gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
 gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
          Length = 332

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 39/305 (12%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPEC- 113
           P + P+ D+ A    +  LT  E   I   L  F   E  V  +   A I R    PE  
Sbjct: 37  PWDEPVVDNDAQ-DLRTKLTPGELNGITTVLKLFTIYERKVGEDYWSARIARTFGRPEIN 95

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           R   L  A E   H+  +  +   L LD+   +  ++E   ++ +  +     +++S P 
Sbjct: 96  RMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEELSRRIQFV---GKSVSDPD 152

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMVGIAEQYQYIM 228
                 DA        F  +   EG   Y+ FA     Q    G+ + M  I       +
Sbjct: 153 ------DAKS------FAAFTFIEGAVLYSSFAFLKHFQAQECGK-DLMRNICRGVDLSV 199

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML---------HEATLLEIAYAHET 279
            DE  H   G  +   +  E    + ++ + K +  +         HE+ ++++ +A   
Sbjct: 200 ADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAYQVFDHESGIIDLVFA--- 256

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFET 338
             +   G+ A     +++   N     +G EP+F+   NP   W    I+ KK  +FF  
Sbjct: 257 --EPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYRTINAKKFHDFFTG 314

Query: 339 RVTEY 343
             +EY
Sbjct: 315 SGSEY 319


>gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 331

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
           LPLK       +       W P ++ +  D   W+   GL +  R  I R   FF + E 
Sbjct: 32  LPLKL------FAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEE 82

Query: 95  LVANNI-----VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            V  +I      +A    L +     YL + AFEEA H   F+  + +LG+ E
Sbjct: 83  AVTEDIQPFLRAMAAEGRLGD---EMYLTQFAFEEARHVQAFRLWLDALGVHE 132


>gi|326932791|ref|XP_003212496.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin-1-like [Meleagris gallopavo]
          Length = 1998

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 205  FAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F  + S  RA+ KM+ IAEQ      + +  L FG+D IN+I++ENP
Sbjct: 1417 FGSLSSTDRADQKMIDIAEQLGLSWAELARELQFGVDDINRIRVENP 1463


>gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate
          division TM7 single-cell isolate TM7a]
          Length = 71

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
          QL P++Y WA+  Y  A  N W P EV +  DLA +K+   L    R+++K+ L 
Sbjct: 19 QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70


>gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus P2]
 gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus L.S.2.15]
 gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.N.15.51]
 gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
 gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus
           solfataricus P2]
 gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15]
 gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14]
 gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51]
 gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK    L D E++ I      FA+ E  VA ++   I   +     
Sbjct: 39  WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169
            +  YL +  +EE+ H   F+           ++ N+  ++ + T     N+   + + L
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228
               +      + +  ++ +  + ++ EG+    G+     +    K++ G+A+    I 
Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207

Query: 229 RDESLHLNFGIDVINQI 245
            DES H+ FGI +I ++
Sbjct: 208 TDESRHIAFGIYLITRL 224


>gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 341

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 107/275 (38%), Gaps = 31/275 (11%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
            C N W+P ++P+ +DL  W+S + +    + +I R        +++ A    +A   H 
Sbjct: 48  VCQNFWLPEKIPVSNDLETWRSLDPIW---QKVITRTFTGLTLLDTIQATIGDIAQLPHS 104

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF  A+H+ ++           G +F+       I     W +  T++
Sbjct: 105 LTDHEQVIYTNFAFMVAIHARSY-----------GTIFSTLCSTEQINEAHEWVIN-TKS 152

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     F TG      +      V   +  G   Y GF     L    K+   ++ 
Sbjct: 153 LQDRAKILIPFYTGKDPLKSK------VAAALMPGFLLYGGFYLPFYLSSRMKLPNTSDI 206

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLLEIAYAHETMPK 282
            + I+RD+ +H N+      Q K+E   L   KE ++    +L++   LE  Y +E   +
Sbjct: 207 IRLILRDKVIH-NYYSGYKYQKKVEKLSLEKQKEMKEFVFDLLYKLIDLEKKYLYELYEE 265

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +GL A    ++  + A +    +G +  F   E
Sbjct: 266 --IGL-AEDAIKFSLYNAGKFLQNLGYDSPFTSEE 297


>gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 335

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 45  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166
           ++ E   Y    AF  AVH+ ++  I ++L   E   E         ++ A+A   + Y 
Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 157

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                    TG      +      V   +  G   Y GF     L    K+   A+  + 
Sbjct: 158 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 203

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 204 ILRDKVIH 211


>gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus DPC 4571]
 gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 340

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    ++++ V +  V  I    
Sbjct: 50  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 104

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 211 RDKVIH 216


>gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A]
          Length = 308

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK    L D E++ I      FA+ E  VA ++   I   +     
Sbjct: 39  WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169
            +  YL +  +EE+ H   F+           ++ N+  ++ + T     N+   + + L
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228
               +      + +  ++ +  + ++ EG+    G+     +    K++ G+A+    I 
Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207

Query: 229 RDESLHLNFGIDVINQI 245
            DES H+ FGI +I ++
Sbjct: 208 TDESRHIAFGIYLITRL 224


>gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
 gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
          Length = 335

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 45  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166
           ++ E   Y    AF  AVH+ ++  I ++L   E   E         ++ A+A   + Y 
Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 157

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                    TG      +      V   +  G   Y GF     L    K+   A+  + 
Sbjct: 158 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 203

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 204 ILRDKVIH 211


>gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus CNRZ32]
 gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 340

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    ++++ V +  V  I    
Sbjct: 50  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 104

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 211 RDKVIH 216


>gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4]
          Length = 308

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK    L D E++ I      FA+ E  VA ++   I   +     
Sbjct: 39  WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169
            +  YL +  +EE+ H   F+           ++ N+  ++ + T     N+   + + L
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228
               +      + +  ++ +  + ++ EG+    G+     +    K++ G+A+    I 
Sbjct: 148 PKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207

Query: 229 RDESLHLNFGIDVINQI 245
            DES H+ FGI +I ++
Sbjct: 208 TDESRHIAFGIYLITRL 224


>gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           geothermalis DSM 11300]
 gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM
           11300]
          Length = 319

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 102/270 (37%), Gaps = 24/270 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W   E+P+  D A W++   L+  ER    R      + ++L     +  +     + + 
Sbjct: 28  WFSEEIPIASDAADWRA---LSPAERTCYTRVSAGLNAMDTLQGEVGMPLLAAGEDDHQR 84

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +  L   AF E VH+ ++     +     +E E F      P         LQ   T+  
Sbjct: 85  KATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPH--------LQRKITVFR 136

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +  G  DA    L        + E   FY+GF   L L    KM  + E +  I  DE
Sbjct: 137 RLYEEG--DALTRMLAS-----CLLETALFYSGFFYPLYLAGQGKMSHMGEVFTLICADE 189

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           +LH ++   +  +     P       + +   +  E    E AY  E   +  VGL A  
Sbjct: 190 ALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVYAE--VGL-ASE 246

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
            + ++++  N  C  +GLE LF   E NP 
Sbjct: 247 VKTFVRYNFNICCDNLGLERLFPEEEVNPL 276


>gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 352

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    +++S V +  V  I    
Sbjct: 62  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 116

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166
           ++ E   Y    AF  AVH+ ++  I ++L   E   E         ++ A+A   + Y 
Sbjct: 117 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 174

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                    TG      +      V   +  G   Y GF     L    K+   A+  + 
Sbjct: 175 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 220

Query: 227 IMRDESLH 234
           I+RD+ +H
Sbjct: 221 ILRDKVIH 228


>gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.14.25]
 gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.27]
 gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25]
 gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27]
          Length = 308

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK    L D E++ I      FA+ E  VA ++   I   +     
Sbjct: 39  WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169
            +  YL +  +EE+ H   F+    ++        N+  ++ + T     N+   + + L
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFFDAV--------NVMEDLSTYTKDLSPNYKKIFYEEL 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228
               +      + +  ++ +  + ++ EG+    G+     +    K++ G+A+    I 
Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207

Query: 229 RDESLHLNFGIDVINQI 245
            DES H+ FGI +I ++
Sbjct: 208 TDESRHIAFGIYLITRL 224


>gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 337

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF  A+H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMSNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus]
          Length = 215

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
           A  N W   E    DD+  +       D E L   R +  F S+     N  +  + +  
Sbjct: 20  AIKNRWAEDEFMYTDDIKDFSR----LDPEALDFYRFIFTFLSAADDKVNINLDQLKQLF 75

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQ 164
              +   Y   Q   E VHS T+  +  +L  ++ +    Y E     P+I  K +W   
Sbjct: 76  PQKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDW--- 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                        TK  + E + + ++  ++ EG++F   FA I  L        +    
Sbjct: 133 -----------LNTKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSN 181

Query: 225 QYIMRDESLHLNFGIDVIN 243
             I RDE++H      + N
Sbjct: 182 DLISRDEAIHTQASCCIFN 200


>gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus MTCC 5463]
          Length = 335

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108
           N W+P ++P+ +D++ W   N L+DD + +I R    L    ++++ V +  V  I    
Sbjct: 45  NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           ++ E   Y    AF  AVH+ ++  I ++L   E ++   +  V +     N ALQ    
Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
              P +T       +       V   +  G   Y GF     L    K+   A+  + I+
Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205

Query: 229 RDESLH 234
           RD+ +H
Sbjct: 206 RDKVIH 211


>gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
 gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
          Length = 329

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 27/266 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   L  +E+ +  R        +++  +     +      P
Sbjct: 39  NFWLPEKVPLSNDIPSWAA---LKPEEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITP 95

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
                    +F EAVH+ ++  I ++L     ++ + YR      ++ N  LQ    L  
Sbjct: 96  HEEAVYSNISFMEAVHARSYSSIFSTL-CSTSDVDDAYR-----WSEENEFLQKKSALIL 149

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +     D  +  +  +F+     E   FY+GF   +      ++   A+  + I+RDE
Sbjct: 150 EHYRN--PDPLKRKIASVFL-----ESFLFYSGFYLPMFWSSRARLTNTADMIRLIIRDE 202

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGL 287
           ++H  + I    Q  +E     ++E +Q+++    +  LLE+    A   E +  G VGL
Sbjct: 203 AVH-GYYIGYKFQRGLEP---LSEEQRQETKDFAFD-LLLELYDNEAKYTEALYDG-VGL 256

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++++ + AN+    +G E LF
Sbjct: 257 TE-DVKKFLHYNANKALMNLGYEALF 281


>gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus 98/2]
 gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2]
          Length = 308

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 16/197 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK  N L   E++ I      FA+ E  VA ++   I   +   + 
Sbjct: 39  WDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGKV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169
            +  YL +  +EE+ H   F+    ++        N+  ++ + T     N+   + + L
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFFDAV--------NVIEDLSAYTKDLSPNYRKIFYEEL 147

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228
               +      + +  ++ +  + +V EG+    G+     +    K++ G+A+    I 
Sbjct: 148 PKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRITNTRKILPGLAKMINLIA 207

Query: 229 RDESLHLNFGIDVINQI 245
            DES H+ FG+ +I ++
Sbjct: 208 TDESRHIAFGVYLIARL 224


>gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 81

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324
            +GLN     QY+++I N R   +GL   F+  T+NP PW++
Sbjct: 1   MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 42


>gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 356

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 128/327 (39%), Gaps = 38/327 (11%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG---LTDDERLMIKRNLGFFA 90
           L P+++   W+ Y +   N W   EV M DDL      NG   L+  E+ ++ +      
Sbjct: 29  LFPIQFNEIWQAYKNLEANFWSAEEVEMSDDL------NGFEQLSRKEQSLMLQITSILC 82

Query: 91  SSESLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELF 146
               L  N  +L+ Y   +  PE R +   Q  ++ +HS     I+      E    +L 
Sbjct: 83  MGCGL-NNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDMFSESEKQRDDLL 141

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-----DQEFLQDLFVFYVVFEGMWF 201
           ++ +++PS T    WA  +      P     T  A      Q  L+D+  F    E    
Sbjct: 142 DVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQAIHQVSLRDIIAFIAGPE---- 197

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----GIDVINQIKIENPHLWTKEF 257
            T    + S   ++ + G+      I  D+  +L+F      +++ +   +  HL  +  
Sbjct: 198 -TSTLPVTS-SESHLLHGVVHAMHKIHHDQLQYLSFLALIQSNLVRRADTQLVHLMARA- 254

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP--SCEQYMQFIANRRCHQIGLEPLFKY 315
                 +  E TL++  +   T      G   P  + +  ++F+ +     +G  P   +
Sbjct: 255 -----AVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDMCLTTMGY-PAMYH 308

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTE 342
            ++P PW+S +   + +K   +T  T+
Sbjct: 309 VQDPIPWISVLHVREAKKGSADTHTTQ 335


>gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 328

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK  S     W+ T +P+ ++ + W+    L ++ER +  + L   AS  +  +    
Sbjct: 31  TWEKLTSLF---WLDTRIPVTNEKSQWED---LPENERKVFLKTLAGLASVATFQSERGF 84

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159
           + I       +         F E+VH+  +  I+          FN  +EV  I   A  
Sbjct: 85  MVIEEGEHTQQEAAIYNNIQFIESVHAKAYNTILIG--------FNEPKEVDDILIWADN 136

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           N  L+Y        + TGT       LQ   V  ++ EG+  Y+G    L      +   
Sbjct: 137 NIELKYRLDRILEVYKTGTT------LQKR-VANLILEGVLTYSGLFTPLLYWTQKRFTS 189

Query: 220 IAEQYQYIMRDESLH 234
           +AE  + ++ +ESLH
Sbjct: 190 VAEIIKLVLTNESLH 204


>gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 39/202 (19%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W++  S   N W+P +VP+ +DL  W   N LTD ER +  +          L   + V 
Sbjct: 38  WQRLTS---NFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQ 85

Query: 103 AIYRHLSN-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           A    +S  P+ R           AF +AVH+ ++  + +++   E            I 
Sbjct: 86  ATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-----------EIN 134

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLG 212
           A   WA      + +P+         Q +  D      V   +   +  Y GF   L   
Sbjct: 135 AAYTWA------IGNPALQRRATAVMQHYYGDDPLKRKVAATLLSSLLLYAGFYLPLWFS 188

Query: 213 RANKMVGIAEQYQYIMRDESLH 234
               ++  A+  + I+RD+++H
Sbjct: 189 CRGTLMNTADMIRLILRDKAVH 210


>gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
 gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
          Length = 133

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  Q+ +E      +E Q++++ +L E   +E+AY  E      +GL
Sbjct: 3   VKDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115


>gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 39/202 (19%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           W++  S   N W+P +VP+ +DL  W   N LTD ER +  +          L   + V 
Sbjct: 38  WQRLTS---NFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQ 85

Query: 103 AIYRHLSN-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           A    +S  P+ R           AF +AVH+ ++  + +++   E            I 
Sbjct: 86  ATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-----------EIN 134

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLG 212
           A   WA      + +P+         Q +  D      V   +   +  Y GF   L   
Sbjct: 135 AAYTWA------IGNPALQRRATAVMQHYYGDDPLKRKVAATLLSSLLLYAGFYLPLWFS 188

Query: 213 RANKMVGIAEQYQYIMRDESLH 234
               ++  A+  + I+RD+++H
Sbjct: 189 CRGTLMNTADMIRLILRDKAVH 210


>gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
 gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 339

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +DL+ W+S   L+ + + ++ R        +++ A    +A   H  
Sbjct: 47  TQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSL 103

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
               +      AF   VH+ ++  I ++L   E            I     W ++ T+TL
Sbjct: 104 TDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSE-----------QIEEAHEWVVK-TETL 151

Query: 170 SSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
              +     + TGT     +      V   +  G   Y GF     L    K+   ++  
Sbjct: 152 QKRAKALIPYYTGTDPLKSK------VAAALMPGFLLYGGFYLPFYLSARGKLPNTSDII 205

Query: 225 QYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           + I+RD+ +H N+      Q K+   P     E ++    +L+E   LE AY  E
Sbjct: 206 RLILRDKVIH-NYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYELIDLETAYLKE 259


>gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 339

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +DL+ W+S   L+ + + ++ R        +++ A    +A   H  
Sbjct: 47  TQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSL 103

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
               +      AF   VH+ ++  I ++L   E            I     W ++ T+TL
Sbjct: 104 TDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSE-----------QIEEAHEWVVK-TETL 151

Query: 170 SSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
              +     + TGT     +      V   +  G   Y GF     L    K+   ++  
Sbjct: 152 QKRAKALIPYYTGTDPLKSK------VAAALMPGFLLYGGFYLPFYLSARGKLPNTSDII 205

Query: 225 QYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           + I+RD+ +H N+      Q K+   P     E ++    +L+E   LE AY  E
Sbjct: 206 RLILRDKVIH-NYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYELIDLETAYLKE 259


>gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
 gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P  +PM +D+  W   N L+DD + ++ R        +++ A+   +A  ++    
Sbjct: 48  NFWLPENIPMSNDIPSW---NTLSDDWKQLVTRTFTGLTLLDTVQASIGDIAQIKNSVTD 104

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
             +      AF   VH+ ++  I ++L   E ++   +  V +     N ALQ    L  
Sbjct: 105 HEQVIYANFAFMVGVHARSYGTIFSTLCSSE-QIEEAHEWVVN-----NDALQARAKLLI 158

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P +T      D        V   +  G   Y GF     L    K+   ++  + I+RD+
Sbjct: 159 PYYT-----GDDPLRSK--VAAALMPGFLLYGGFYLPFYLASRAKLPNTSDMIRLILRDK 211

Query: 232 SLH 234
            +H
Sbjct: 212 VIH 214


>gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.4]
 gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4]
          Length = 308

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 38/208 (18%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  + +  D   WK    L D E++ I      FA+ E  VA ++   I   +     
Sbjct: 39  WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95

Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEG-------------ELFNMYREVPSITAK 158
            +  YL +  +EE+ H   F+    ++ + E              ++F  Y E+P    K
Sbjct: 96  EEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSAYTKDLSPNYKKIF--YEELP----K 149

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A W L       SP    G           +  + ++ EG+    G+     +    K++
Sbjct: 150 AMWNLSRD---PSPENQVGA----------VVTYNLIVEGVAAEGGYNIFRQITNTRKIL 196

Query: 219 -GIAEQYQYIMRDESLHLNFGIDVINQI 245
            G+A+    I  DES H+ FGI +I ++
Sbjct: 197 PGLAKMVNLIATDESRHIAFGIYLITRL 224


>gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharomonospora viridis DSM 43017]
 gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 328

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 27/256 (10%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-----VLAIYRHL 108
           W P ++    D   W+    LTD +RL        FA+ E  V  +I      +A    L
Sbjct: 40  WDPADIDFSVDARDWEK---LTDRQRLSATYLCAQFAAGEEAVTEDIQPFLRAMAAEGRL 96

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
            +     YL +  FEEA H+  F+  + ++GL +    +++   P +    ++   + + 
Sbjct: 97  GD---EMYLAQFCFEEAKHTEAFRRWMDAVGLTD----DLH---PFVAENPHYRKLFYEE 146

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQY 226
           L           + +  ++    +  V EG    TG+   Q L + R   + G+ E  + 
Sbjct: 147 LPESLGVLAEDPSPRNQVRASVTYNHVIEGSLALTGYYAWQKLCVSR-GILPGMRELVRR 205

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           +  DE  H+ +G     +    +  LW    Q+    + H   ++E  + +    +   G
Sbjct: 206 VSDDERRHMAWGTFTCRRHVAADDSLWEVVQQRMDELLPHALGMIE--WVNRQFDESSDG 263

Query: 287 LNAPSCEQYMQFIANR 302
            NA    +++++ A+R
Sbjct: 264 DNA----EFVRYAADR 275


>gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
 gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
          Length = 359

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 19/206 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110
           W P  + ++ D   WK    L D ++  + R +  FA+ E  V  ++   ++ I R    
Sbjct: 51  WDPRAIDLRQDKEDWKL---LNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIARE-GR 106

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--QYTQT 168
            E   +L    +EEA H+   +  +  +    GE  + Y   PS        L     + 
Sbjct: 107 LEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHY-HTPSYKKIFYEELPQAMNRL 165

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYI 227
           L  PS     + +          + ++ EG+   TG+ A   +L R   M G  +  +  
Sbjct: 166 LDDPSPAAQAEAS--------VTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFVQGIRNF 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLW 253
            RDES HL +G+ ++ ++   +  +W
Sbjct: 218 QRDESRHLAYGVFLLQRLVAADDSIW 243


>gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           abscessus]
          Length = 313

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 41/270 (15%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P  +    D A W+S   LT+ ER    R    F + E  V  +I   ++  R     
Sbjct: 32  WDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQPFMSAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNM--YREVPSITAKANWALQYT 166
               YL + AFEEA H+  F+  + ++G+ E   G L ++  YRE+     +   AL   
Sbjct: 89  GDEMYLTQFAFEEAKHTQVFRLWLDAVGVSEDLHGYLDDLPAYREI--FFDRLPDALGML 146

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQY 224
               SP+                  +  V EGM   TG+     + + R   + G+ E  
Sbjct: 147 AADPSPAAQVRAS----------VTYNHVVEGMLALTGYFAWHKICVDR-GILPGMQELV 195

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE-IAYAHETMPKG 283
             I  DE  H+ +G     +    +   W+          + EA + E I  A     +G
Sbjct: 196 HRIGDDERRHMAWGTFTCRRHVAADDANWS----------VFEARMNELIPIALRLTEEG 245

Query: 284 F--VGLNAP---SCEQYMQFIANRRCHQIG 308
           F   G + P   S +++MQ+ A++   + G
Sbjct: 246 FELYGDDTPFGLSLDEFMQYSADKGMRRFG 275


>gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 335

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W + N       + +   L    + +  V    V  I   ++
Sbjct: 43  TGNFWLPEKIPVSNDIPSWNTLNETEQIATMRVFTGLTLLDTIQGTVG--AVSLIPDAVT 100

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           + E   Y    AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 101 HHEEAVY-TNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENVNLQ 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D    + +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 RKGEIILRDYDGKNPYKRK--IASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 206

Query: 230 DESLH 234
           DE++H
Sbjct: 207 DEAVH 211


>gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 335

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 16/185 (8%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+P ++P+ +D+  W + N       + +   L    + +  V    V  I   ++
Sbjct: 43  TGNFWLPEKIPVSNDIPSWNTLNETEQIATMRVFTGLTLLDTIQGTVG--AVSLIPDAVT 100

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           + E   Y    AF E+VH+ ++  I  +L              P I     W+ +     
Sbjct: 101 HHEEAVY-TNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENVNLQ 148

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                     D    + +   +   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 149 RKGEIILRDYDGKNPYKRK--IASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 206

Query: 230 DESLH 234
           DE++H
Sbjct: 207 DEAVH 211


>gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 133

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115


>gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 88

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 10  IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 49


>gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
          Length = 337

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   S     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRSRVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS8232]
          Length = 337

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   S     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRSRVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 80

 Score = 37.0 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 2   IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 41


>gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
 gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
          Length = 133

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115


>gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 90

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +GLN     QY+++I N R   +GL+  F+   NP PW++
Sbjct: 12  IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 51


>gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 133

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 +++++ AN+    +GLEP F+  E NP        D K   +FF  +   Y
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115


>gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 335

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 28/191 (14%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
            +N W+P ++P+ +DL  W++   L+DDER +  R          L   + V A    +S
Sbjct: 43  TSNFWLPEKMPLSNDLPDWRA---LSDDERTLTARVF------TGLTLLDTVQATVGEIS 93

Query: 110 N-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
             P+ R           AF +AVH+ ++  + +++     E+ + Y           WA+
Sbjct: 94  QIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTM-CSSAEIEDAY----------TWAI 142

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +     +        D    +   V   +   +  Y GF   L       M+  A+ 
Sbjct: 143 DNRRLQPRATAVMAHYAGDDPLKRK--VASTLLSSLLLYAGFYLPLWYSSRGVMMNTADM 200

Query: 224 YQYIMRDESLH 234
            + I+RD+++H
Sbjct: 201 IRLILRDKAVH 211


>gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda]
          Length = 169

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 16/150 (10%)

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  +A  
Sbjct: 17  VALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFDDIVSNEEILKRARD 76

Query: 162 ALQYTQTLSSPS-----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGF 205
              Y   L   +        GT   +        +E  + L++  +     E + FY  F
Sbjct: 77  ISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLMSVNALEAIRFYVSF 136

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           A   +      M G A+  + I RDE+LHL
Sbjct: 137 ACSFAFAERELMEGNAKIIRLIARDEALHL 166


>gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 317

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 13/188 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D   W+   GLT++ER  +      F + E  V  ++   +A        
Sbjct: 37  WDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAMAAEGRF 93

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL +  FEEA H+  F+  + ++GL  G+L +   E P    +A +  +  ++L+ 
Sbjct: 94  GDEMYLTQFCFEEAKHTQVFRLWMDAVGL-TGDLHSHVAENPGY--RAIFYEELPRSLN- 149

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230
            +       A+Q  ++    +  V EG    TG+     + R+  ++ G+ E  + I  D
Sbjct: 150 -ALHDDPSPANQ--VRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVVRRIGDD 206

Query: 231 ESLHLNFG 238
           E  H+ +G
Sbjct: 207 ERRHMAWG 214


>gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316]
          Length = 336

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P ++P+ +DL  W++   L  D + +I R        +S+ A    +A  +H 
Sbjct: 43  VTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIAQIKHS 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF  A+H+ ++  I ++L   +            I     W +  T++
Sbjct: 100 QTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQ-----------QIEEAHEWVVD-TES 147

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L + S     F TG      +      V   +  G   Y GF     L    K+   ++ 
Sbjct: 148 LQARSRILIPFYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDI 201

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 202 IRLILRDKVIH 212


>gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma mali]
 gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus
           Phytoplasma mali]
          Length = 348

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 26/282 (9%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P ++ +Q DL  WK    L+  E+ +  +NL      ++   ++ +  I       E 
Sbjct: 33  WRPEDISLQGDLQTWKD---LSKFEKNVYSKNLLILTFLDTYQGDSGMFIISSSFKKEEH 89

Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDEGELFNMY------REVPSITAKANWALQ 164
           ++        A E AVH+ ++  I  +L L+  E+ +++      + + +I  K    + 
Sbjct: 90  QKKATLNFMGAMENAVHAKSYSNIFMTL-LNSKEIDDLFVWGGNQKYLQNIIGKI---ID 145

Query: 165 YTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
             + L    F     D +      +++     V  V  E   FY+GF   L      K++
Sbjct: 146 VYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWLFYSGFYYPLFFYSQGKLM 205

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
              E    I+RDES+H  +   +   I      L   E  +    +L      +IA    
Sbjct: 206 QSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKWMYDLLKYFYQEQIALVKS 265

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
              + ++        +++++ AN+    +G  P F+  E NP
Sbjct: 266 VYNEHYL---INDVNKFVRYNANKALMNLGFNPYFEKEEVNP 304


>gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 336

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P ++P+ +DL  W++   L  D + +I R        +S+ A    +A  +H 
Sbjct: 43  VTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIAQIKHS 99

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF  A+H+ ++  I ++L   +            I     W +  T++
Sbjct: 100 QTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQ-----------QIEEAHEWVVD-TES 147

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L + S     F TG      +      V   +  G   Y GF     L    K+   ++ 
Sbjct: 148 LQARSRILIPFYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDI 201

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 202 IRLILRDKVIH 212


>gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
           scotoductus SA-01]
 gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
           scotoductus SA-01]
          Length = 323

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 27/173 (15%)

Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           L +F    E    ++ F  +++L  R  +  GI+   +   ++E+LH  FG++++  ++ 
Sbjct: 151 LLLFSAFTEHASLFSQFYVLMALNKRLGRFKGISNAIEATSKEENLHGLFGVELLRILRE 210

Query: 248 ENPHLWTKEFQQKSRTMLH-----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           E P L+   F +++   +      E  LLE  +A     +G     A   E+ ++F+  R
Sbjct: 211 ERPDLFGPSFTEEALDRVEAFFRTEEALLEWIFA-----RG--DTEAVRGEEVLEFLKWR 263

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVI------DLK----KEKNFFETRVTEYQQ 345
               + L  L      PFP   E +      DL+    KE +FF  R   Y +
Sbjct: 264 YNQVLALHGL----PAPFPVRKECLRDTEWFDLELLADKEVDFFNKRSVAYAR 312


>gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 115

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + +
Sbjct: 21  TWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
            ++ +++   +    L    F E+VH+ ++  I ++L
Sbjct: 75  ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111


>gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 150

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAKANWAL 163
           AF E +HS ++ +II ++  D   +F+                  Y E+  +T+  +   
Sbjct: 4   AFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLG 63

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           + T T++  +     ++  ++    L       E + FY  FA   +      M G A+ 
Sbjct: 64  EGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKI 122

Query: 224 YQYIMRDESLHLNFGIDVINQIK 246
            + I RDE+LHL     ++N ++
Sbjct: 123 IRLIARDEALHLTGTQHMLNLLR 145


>gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 237

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---LNFGIDVI--NQIKIE 248
           V+ E   FYTGF   L      K+   A+  + IMRDE +H   L +    +    +  E
Sbjct: 74  VLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEGVHGYYLGYKFQKVMEGALPYE 133

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              +  +      R  ++E  L+E  Y         +GL+A   + ++++  N+    +G
Sbjct: 134 RDAVKERVTNLACRLFVNEIPLIEEIYEP-------LGLSA-QVQTFLRYNLNKAMQNLG 185

Query: 309 LEPLF 313
           LE +F
Sbjct: 186 LENVF 190


>gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii]
          Length = 111

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSI 155
           N+     R +   E +++   Q   E +HS T+  +I +   DE E  N++     +P+I
Sbjct: 2   NLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAI 61

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             KA WA ++    +S                +  V     EG+ +   F Q     + N
Sbjct: 62  KNKALWAAKWINDTNS--------------FAERIVANACVEGILYSGSFLQFFGFKKQN 107

Query: 216 KMVG 219
           K+ G
Sbjct: 108 KLHG 111


>gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
          Length = 311

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 18  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 74

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 75  QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 122

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 123 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 176

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 177 IRLILRDKVIH 187


>gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma
           laidlawii PG-8A]
 gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma
           laidlawii PG-8A]
          Length = 369

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 23/276 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-E 112
           W P +V +Q DL +W     L ++ +    +NL      ++   +  +  + R L +   
Sbjct: 46  WRPEDVSLQPDLNVWSV---LPENIQDAYAKNLLVLTFLDTHQGDIGMPVVSRSLDDHFH 102

Query: 113 CRQYLLR--QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168
            R+ +L    A E AVH+ ++  I  +   ++   ELF+   +  ++    +  + Y + 
Sbjct: 103 QRKAVLNFMGAMENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNIMSLIVGYYKE 162

Query: 169 LSSPSFTTGTKDADQEFLQDLF--------VFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           L   ++    +  D  + +  F        V  V  E   FY+GF   L      K++  
Sbjct: 163 LDRYNYLKQFESNDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLFFYGQGKLMQA 222

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            E    I+RDES+H   G+  + ++  E    ++ E Q++    +H+  LLE+ +    +
Sbjct: 223 GEIINLILRDESIH---GL-YVGRLAQEVFETFSNELQEQLTQWVHDF-LLELYHEQNEL 277

Query: 281 PKGFVGLNAPS--CEQYMQFIANRRCHQIGLEPLFK 314
            +        S   + ++++ AN+    +G +P F+
Sbjct: 278 VESIYDAVELSHDVKIFVRYNANKALMNLGFDPYFE 313


>gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 337

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 155

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P EV +  D   +     L D E+ +   NL +    +S+   +  +A+   +S PE 
Sbjct: 49  WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRA 151


>gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS315]
 gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1]
 gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
          Length = 337

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 337

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
          Length = 337

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS]
 gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
 gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
          Length = 337

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 337

 Score = 35.8 bits (81), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
              N W+P +VP+ +DL  W+S   L +D + +I R        +++ A    +A  +H 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                +      AF   +H+ ++  I ++L   E            I     W +  TQ+
Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148

Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           L   +     + TG      +      V   +  G   Y GF     L    KM   ++ 
Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202

Query: 224 YQYIMRDESLH 234
            + I+RD+ +H
Sbjct: 203 IRLILRDKVIH 213


>gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
          Length = 333

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106
            +N W+P +VP+ +DL  W   N L+D ER +  R    L    + ++ V    +  I  
Sbjct: 42  TSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGLTMLDTVQATVGE--ISQIQD 96

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
            ++  E   Y    AF +AVH+ ++  I ++L              P I A   WA+
Sbjct: 97  GITEHEQAIY-ANIAFMQAVHARSYSSIFSTLS-----------NTPEIDAAYTWAV 141


>gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 337

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 32/194 (16%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIY 105
              N W+P +VP+ +DL  W+S   L +D + +I R    L    + ++ V +  V  I 
Sbjct: 44  VTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGLTLLDTVQATVGD--VAQIQ 98

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
             L++ E   Y    AF  A+H+ ++           G +F+       I    +W +  
Sbjct: 99  HSLTDHEQVIY-TNFAFMVAIHARSY-----------GTIFSTLCSSQQIEEAHDWVVS- 145

Query: 166 TQTLSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           T++L   +     + TG      +      V   +  G   Y GF     L    KM   
Sbjct: 146 TESLQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNT 199

Query: 221 AEQYQYIMRDESLH 234
           ++  + I+RD+ +H
Sbjct: 200 SDIIRLILRDKVIH 213


Searching..................................................done


Results from round 2




>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP
Sbjct: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ
Sbjct: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD
Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID
Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA
Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD
Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352


>gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
 gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
          Length = 458

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 232/349 (66%), Positives = 283/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  +  G  RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  
Sbjct: 110 ATGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNA 169

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DLALWK  +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 170 DLALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 229

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ
Sbjct: 230 EALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQ 289

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 290 KLLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVIN 349

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+Q+   M+ EA  LE  YAH+TMP+G +GLNA   E Y+ FIANRR
Sbjct: 350 QIKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRR 409

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 410 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458


>gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 408

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 226/349 (64%), Positives = 287/349 (82%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           NTGL  I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL  C NHWMP E+ M  
Sbjct: 60  NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +T+ L+ P F TGT + DQ
Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT  F+++ RTM+ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANRR
Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL  ++   ENPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408


>gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC
           17616]
          Length = 396

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 53  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396


>gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
 gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
          Length = 411

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 219/358 (61%), Positives = 271/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+  G       E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT + DQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411


>gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium
           sp. BNC1]
 gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1]
          Length = 369

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 273/351 (77%), Positives = 304/351 (86%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 19  TDATGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 78

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 79  QADIALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 138

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L  P+F TGT +A
Sbjct: 139 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEA 198

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 199 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 258

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK ENPHLWT EFQ++ R ML +A  LE AY  +TMP+GF+GLNA  CEQYM FIAN
Sbjct: 259 INQIKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIAN 318

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 319 RRCAQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369


>gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           rhizoxinica HKI 454]
 gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1)
           [Burkholderia rhizoxinica HKI 454]
          Length = 416

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 220/345 (63%), Positives = 268/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           SP  A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 72  SPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 131

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 132 WKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 191

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ PSF TGT +ADQ+ L+
Sbjct: 192 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLK 251

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 252 SLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 311

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT  F+++   +   A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QI
Sbjct: 312 ENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICNRRCQQI 371

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 372 GLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
 gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
          Length = 412

 Score =  434 bits (1117), Expect = e-120,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
 gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
          Length = 403

 Score =  434 bits (1117), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           TJI49]
          Length = 403

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 272/352 (77%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A      P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 52  VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +
Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 232 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 291

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 292 LINQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIS 351

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 352 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
 gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           multivorans ATCC 17616]
 gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
          Length = 403

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus
           capsulatus str. Bath]
 gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus
           capsulatus str. Bath]
          Length = 403

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 229/349 (65%), Positives = 286/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  
Sbjct: 55  ATGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNA 114

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 115 DIALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 174

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ
Sbjct: 175 EALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQ 234

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVIN
Sbjct: 235 KLLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVIN 294

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT  F+ +   M+ EA  +E  YA++TMP+G +GLNAP  ++Y+QFIANRR
Sbjct: 295 QIKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRR 354

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 355 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403


>gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           winogradskyi Nb-255]
 gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255]
          Length = 391

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 268/351 (76%), Positives = 296/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            +  GL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 41  TDAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 100

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 101 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 160

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 161 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 220

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+
Sbjct: 221 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDI 280

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IAN
Sbjct: 281 INQIKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIAN 340

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 341 RRCAQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391


>gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
 gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
          Length = 412

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 225/348 (64%), Positives = 288/348 (82%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G +R+ VDDK+++N  +D+NQL+P KY WAW+KYL  C NHWMP E+ M  D
Sbjct: 65  TGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNAD 124

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 125 IALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 184

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY + SLGLDEGE+FNMYREVPS+  KA WAL +T+ L+ P+F TGT +ADQ+
Sbjct: 185 ALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQK 244

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L++L  FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQ
Sbjct: 245 LLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQ 304

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT+EF+ + RT++ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANRRC
Sbjct: 305 IKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANRRC 364

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL  ++   +NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 365 AQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
           fusca YX]
 gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 354

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 274/350 (78%), Positives = 309/350 (88%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N TGL  IQ+G  RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 5   NTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQ 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQAF
Sbjct: 65  ADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAF 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YT+ L +P+FTTGT +AD
Sbjct: 125 EEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEAD 184

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 185 QAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT+EFQ + RTML EA  LE AY  ETMP+G +GLNA  CEQYM+FI +R
Sbjct: 245 NQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITDR 304

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  Q+GL P+F  TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD
Sbjct: 305 RAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354


>gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio
           japonicus Ueda107]
 gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus
           Ueda107]
          Length = 429

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/352 (63%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 78  LDPAPGLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 137

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 138 MTADIALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 197

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +FEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +L +P+FTTGT +
Sbjct: 198 SFEEAIHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPE 257

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 258 TDQELLRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 317

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT EFQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+ FIA
Sbjct: 318 VINQIKLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIA 377

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC Q+GL+  F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 378 NRRCAQLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429


>gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
 gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
          Length = 403

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria AMMD]
 gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria MC40-6]
 gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD]
 gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           MC40-6]
          Length = 403

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
 gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
          Length = 415

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 216/349 (61%), Positives = 265/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N         E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  
Sbjct: 67  NAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSR 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 127 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ
Sbjct: 187 EAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQ 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN
Sbjct: 247 TLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRR
Sbjct: 307 QIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 367 CQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415


>gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 377

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 273/351 (77%), Positives = 299/351 (85%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A  TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 27  AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 87  QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENPHLWTK FQ + R M+ EA  LE AY  +TMP+GF+GLNA  CEQYM FIAN
Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377


>gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           383]
 gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 403

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           vietnamiensis G4]
 gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis
           G4]
          Length = 403

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 268/344 (77%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 415

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 230/347 (66%), Positives = 285/347 (82%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M  D+
Sbjct: 69  GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT  F+Q++  M+ EA  LE  YA++TMP+G +GLNAP  ++Y++FIANRRC 
Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSE++DLKKEKNFFETRVTEYQ G  LKWD
Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415


>gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           xenovorans LB400]
 gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 411

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 73  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 132

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 133 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 192

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 193 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 252

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 253 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 312

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 313 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 372

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 373 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411


>gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
 gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
          Length = 403

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 371

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 269/349 (77%), Positives = 297/349 (85%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  I     RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ 
Sbjct: 23  ATGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQA 82

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DLA+W+S++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFE
Sbjct: 83  DLAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFE 142

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+HTFQYI  SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ
Sbjct: 143 EAIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQ 202

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN
Sbjct: 203 AFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 262

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLW+  FQ++ R ML EA  LE+AY  +TMP+GF+GLNA  CE YM FI NRR
Sbjct: 263 QIKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRR 322

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C Q+GL P+F  T+NPFPWMSE IDLKKEKNFFETRV EYQ G  LKWD
Sbjct: 323 CAQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371


>gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
 gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
          Length = 372

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 29  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 89  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
 gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
          Length = 427

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus
           oceani ATCC 19707]
 gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
 gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
           19707]
 gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
          Length = 412

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           hamburgensis X14]
 gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 416

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 270/351 (76%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I     RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV M
Sbjct: 66  TDATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSM 125

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 126 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 185

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L  P F TGT +A
Sbjct: 186 FEEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEA 245

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 246 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 305

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CEQYM  IAN
Sbjct: 306 INQIKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIAN 365

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 366 RRCAQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416


>gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia MC0-3]
 gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           MC0-3]
          Length = 403

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia J2315]
 gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           cenocepacia J2315]
          Length = 403

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 216/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
 gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
          Length = 411

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+            RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
 gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
          Length = 411

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+            RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT +ADQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia AU 1054]
 gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia HI2424]
 gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU
           1054]
 gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           HI2424]
          Length = 382

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 39  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 99  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382


>gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AYE]
 gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
 gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB056]
 gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB058]
 gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB059]
 gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AYE]
 gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 427

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. ADP1]
 gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           sp. ADP1]
          Length = 427

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/348 (63%), Positives = 280/348 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL  I+ G  RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 80  TAGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNH 139

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFE
Sbjct: 140 DIALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFE 199

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YTQ+LS P F TGT + DQ
Sbjct: 200 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQ 259

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID+IN
Sbjct: 260 QLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGIDMIN 319

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQQ+   M+ E TLLEI YA +TMP+G +G+NA   E+Y++FI NRR
Sbjct: 320 QIKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRR 379

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             Q+GL   ++   NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 380 LAQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ACICU]
 gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii
           ACICU]
          Length = 427

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei SAVP1]
 gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10229]
 gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 668]
 gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10247]
 gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1106a]
 gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei DM98]
 gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 14]
 gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 91]
 gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei B7210]
 gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 7894]
 gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 112]
 gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei SAVP1]
 gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 668]
 gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
          Length = 403

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 59  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 118

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 119 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 178

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 179 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 238

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 239 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 298

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 299 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 358

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 359 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
 gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
          Length = 389

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 270/351 (76%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+ TGL  I  G  RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M
Sbjct: 39  ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 99  QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV
Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWTK FQ + R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IAN
Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389


>gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
 gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
          Length = 427

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phytofirmans PsJN]
 gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans
           PsJN]
          Length = 415

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 215/348 (61%), Positives = 264/348 (75%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
                    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D
Sbjct: 68  AAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRD 127

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEE
Sbjct: 128 IALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 187

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ 
Sbjct: 188 AIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQT 247

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ
Sbjct: 248 LLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQ 307

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC
Sbjct: 308 IKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRC 367

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 368 QQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415


>gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii SDF]
 gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii]
          Length = 427

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
 gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
          Length = 373

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 269/350 (76%), Positives = 300/350 (85%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 24  EQTGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQ 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84  ADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++AD
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEAD 203

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 263

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+EN HLWTK FQ+  R M+ +A  LE AY  +TMP+GF+GLNA  CEQYM FIANR
Sbjct: 264 NQIKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 324 RCAQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373


>gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
 gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
          Length = 414

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 216/339 (63%), Positives = 265/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 76  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
 gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
          Length = 358

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 265/347 (76%), Positives = 296/347 (85%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  I+ G  RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+
Sbjct: 12  GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALW+S NGLT DER  IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA
Sbjct: 72  ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L  P F TGT +ADQ F
Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI
Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW + FQ + RTML EA  LEIAY  +TMP G +GLNA  CEQYM+FI NRRC 
Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GLEP+F  TENPFPWMSE +DLKKEKNFFETRVTEY  G  L WD
Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358


>gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
 gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
          Length = 427

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA+W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
 gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           thailandensis E264]
          Length = 377

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/345 (63%), Positives = 270/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 33  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 93  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+
Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 212

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377


>gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1710b]
 gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
 gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei 1710b]
 gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
          Length = 376

 Score =  427 bits (1099), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 32  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 91

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 92  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 151

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 152 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 211

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 212 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 271

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 272 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 331

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 332 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376


>gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus
           degradans 2-40]
 gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 423

 Score =  427 bits (1099), Expect = e-118,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 72  MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT +
Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423


>gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
 gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
          Length = 414

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 263/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 76  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F TGT + DQ  L+ L VF 
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris TIE-1]
 gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           TIE-1]
          Length = 373

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 264/350 (75%), Positives = 290/350 (82%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 24  DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84  ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  P F TGT   D
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL DL  FYVVFEGMWFYTGFAQILSLGR  KM GIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+EN  +WT  FQ   R M+H+A  LE AY  +TMP G +GLNA  CE YM FIANR
Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373


>gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis Tohama I]
 gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           parapertussis 12822]
 gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           bronchiseptica RB50]
 gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           pertussis Tohama I]
 gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           parapertussis]
 gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           bronchiseptica RB50]
 gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis CS]
          Length = 398

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 267/349 (76%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
              L    A   RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 50  AASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSR 109

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 110 DIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 169

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ
Sbjct: 170 EAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQ 229

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN
Sbjct: 230 KLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLIN 289

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            IK+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRR
Sbjct: 290 TIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRR 349

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIG+EPLF   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 CQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
 gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
          Length = 440

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 95  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
 gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
          Length = 440

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 95  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 360

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 261/349 (74%), Positives = 300/349 (85%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           ++GL  I     RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ 
Sbjct: 12  SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE
Sbjct: 72  DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI  SLGLDEGELFNMYRE+PSI+ K  WAL+YTQ L +P F  GT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQ++ RTML EA  LE+AY  +TMP+G +GLNA  CE+YM+FI NRR
Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C Q+GLEP+F  T NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360


>gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 427

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 223/346 (64%), Positives = 279/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT  FQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 9]
 gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei BCC215]
 gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
 gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
          Length = 372

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 219/345 (63%), Positives = 271/345 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 28  SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 87

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 88  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 147

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+
Sbjct: 148 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 207

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 208 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 267

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 268 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 327

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 328 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
 gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
          Length = 376

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 270/352 (76%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + + T  +   +   RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV 
Sbjct: 25  IKSATAAANQPSHSGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVS 84

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK    L+DDERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQ
Sbjct: 85  MSRDIAQWKDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQ 144

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            FEEA+H+H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + +  TL+ P+F TGT +
Sbjct: 145 GFEEAIHTHAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAE 204

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 205 ADQELLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGID 264

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VIN IK+ENPHLWT EF+++ +T++ +   LE  YA  TMP+G +GLNA   ++Y++FIA
Sbjct: 265 VINTIKLENPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIA 324

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 325 NRRCTQIGLDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium
           197N]
 gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium
           197N]
          Length = 394

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 269/351 (76%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A     + +    +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 44  AAPQSAADLGNTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 103

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 104 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 163

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +A
Sbjct: 164 FEEAIHTHAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEA 223

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+
Sbjct: 224 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDL 283

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           IN IK+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIAN
Sbjct: 284 INTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIAN 343

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIG+EPL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 344 RRCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394


>gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
 gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
          Length = 407

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 266/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y E+ SI  K  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRRC QIGL+ L+
Sbjct: 309 TPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLDALY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
          Length = 427

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           [Ralstonia solanacearum CFBP2957]
 gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CFBP2957]
          Length = 402

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 263/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 54  NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 174 EAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 353

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 354 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
 gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
          Length = 427

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FIANRR  
Sbjct: 322 KIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
 gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
          Length = 427

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
          Length = 410

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 263/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 62  NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 121

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 122 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 181

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 182 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 241

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 242 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 301

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 302 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 361

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 362 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410


>gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
 gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
          Length = 427

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 322 KIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLA 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           petrii DSM 12804]
 gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii]
          Length = 396

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 209/342 (61%), Positives = 268/342 (78%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A   RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+
Sbjct: 55  DAAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKN 114

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H 
Sbjct: 115 PNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 174

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QYI+ SL LDE E+FN Y EVPSI AK  + + + + ++ P+F TGT ++DQ+ L+ L 
Sbjct: 175 YQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLI 234

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENP
Sbjct: 235 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENP 294

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+E
Sbjct: 295 HLWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIE 354

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 355 PLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396


>gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter
           vinelandii DJ]
 gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter
           vinelandii DJ]
          Length = 416

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 214/347 (61%), Positives = 276/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP E+ M  D+
Sbjct: 70  GLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++ 
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQL 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIANRRLS 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phymatum STM815]
 gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815]
          Length = 407

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 265/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG++PL+
Sbjct: 309 TPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPLY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
 gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
          Length = 427

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 223/346 (64%), Positives = 281/346 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 82  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR +
Sbjct: 322 KIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLN 381

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
 gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
          Length = 421

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 75  GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA
Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEG +FNMYREVPS+  KA W+L +T +LS P+F TGT + DQ+ 
Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 255 LRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 314

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT EFQ++   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI NRR +
Sbjct: 315 KLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 374

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 375 QLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421


>gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           metallidurans CH34]
 gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 395

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 262/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 47  NNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 106

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 107 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 166

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 167 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 226

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 227 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 286

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 287 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 346

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 347 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
 gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
          Length = 469

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/347 (62%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK+  GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA
Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +T  LS P+F TGT ++DQ  
Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTL 302

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 303 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 362

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENP LWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 363 KLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLS 422

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 423 QIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469


>gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira
           multiformis ATCC 25196]
 gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 408

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 272/339 (80%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M  D+ALWK  NG
Sbjct: 70  HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNG 129

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 130 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQY 189

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ PSF TGT +ADQ+ L+ L VF 
Sbjct: 190 IVESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFA 249

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLW
Sbjct: 250 CIMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLW 309

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           TKEF+ +   ++ +A  LE  YA +TMP+G +GLNAP  ++Y+++IANRRC QIGL+ L+
Sbjct: 310 TKEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILY 369

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 370 PGASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408


>gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           glumae BGR1]
 gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           glumae BGR1]
          Length = 407

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 212/339 (62%), Positives = 268/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +++RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT+DADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRRC QIGL+PL+
Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
           borkumensis SK2]
 gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis
           SK2]
          Length = 430

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 220/347 (63%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  DL
Sbjct: 84  GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK  +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA
Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT + D+  
Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI
Sbjct: 264 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 323

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW  + + K+  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 324 KLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 383

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 384 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430


>gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
 gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
          Length = 357

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 261/351 (74%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV M
Sbjct: 7   TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAM 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67  QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID 
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM F+ +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTD 306

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 307 RRAQQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei ATCC 23344]
 gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei K96243]
 gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 23344]
          Length = 350

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/352 (63%), Positives = 274/352 (77%), Gaps = 2/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA N   S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 1   MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 59  MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +
Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 354

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 257/350 (73%), Positives = 296/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N TGL  I+AG  RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM 
Sbjct: 5   NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+  +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF
Sbjct: 65  ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S  F T +++  
Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI
Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI+ ENP LWT +F+Q+  TML EA  LE+AYA +TMP+G +GLNA  CE+YM FI NR
Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL+ L+    NPFPWMSEV+DL+KEKNFFETRVT+Y+ G  L+WD
Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354


>gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 419

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 221/347 (63%), Positives = 279/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  D+
Sbjct: 73  GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK  +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA
Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L  T +LS P+F TGT + DQE 
Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 253 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 312

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENP LWT EFQQ++  M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI NRR +
Sbjct: 313 KLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 372

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 373 QVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419


>gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis EO147]
          Length = 369

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 217/345 (62%), Positives = 269/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 25  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 85  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis TXDOH]
 gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis Bt4]
 gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
          Length = 350

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 273/352 (77%), Gaps = 2/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA N   S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ 
Sbjct: 1   MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQ
Sbjct: 59  MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +
Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+
Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 370

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 25  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 85  ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT + DQ  
Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 205 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 264

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 265 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 324

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 325 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370


>gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 415

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 216/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
 gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
          Length = 402

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 263/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 54  NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 353

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 354 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
 gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
          Length = 385

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/351 (59%), Positives = 263/351 (74%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+        A  +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 35  ASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 94

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 95  SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 154

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I  K  + + +   +  P+F+TGT +A
Sbjct: 155 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTPEA 214

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 215 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 274

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENP LWT  F+ + R +   A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 275 INQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 334

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV +YQ G  L WD
Sbjct: 335 RRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385


>gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis C6786]
          Length = 369

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 217/345 (62%), Positives = 268/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 25  SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 85  WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT  ADQ+ L+
Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+
Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QI
Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 372

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 276/352 (78%), Positives = 313/352 (88%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A+  GL PIQ G  R++ D+KRM+NARSDVNQLLPLKY WAWEKYL  CNNHWMPTEV 
Sbjct: 21  IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ
Sbjct: 81  MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D
Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID
Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT++FQQ+ R ML EA LLE+AY  +TMPK F+G+NA  CE+YM FI 
Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G  L WD
Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372


>gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha JMP134]
 gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 394

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 261/349 (74%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 46  NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 105

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+A WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 106 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 165

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 166 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 225

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 226 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 285

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 286 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 345

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 346 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394


>gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha H16]
 gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia
           eutropha H16]
          Length = 395

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/345 (61%), Positives = 261/345 (75%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 51  AAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 110

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H
Sbjct: 111 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIH 170

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+
Sbjct: 171 THAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLK 230

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+
Sbjct: 231 SLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKL 290

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QI
Sbjct: 291 ENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQI 350

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 351 GLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 420

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 220/349 (63%), Positives = 284/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV M  
Sbjct: 72  AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 131

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE
Sbjct: 132 DIALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 191

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT + DQ
Sbjct: 192 EAIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 251

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+IN
Sbjct: 252 ELLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMIN 311

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI NRR
Sbjct: 312 QIKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRR 371

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +   ENPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 372 LAQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420


>gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
 gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 425

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 283/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G  RV+VD+K M+N R+D+NQL+PLKY WAW+KYL  C NHWMP E+ 
Sbjct: 74  MDVAAGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEIN 133

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 134 MTADVATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 193

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++
Sbjct: 194 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQE 253

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 254 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 313

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENP+LWT+ FQQ+   M+ E T +EI YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 314 VINQIKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIA 373

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 374 NRRLSQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425


>gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris
           marina MBIC11017]
 gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris
           marina MBIC11017]
          Length = 384

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/344 (59%), Positives = 264/344 (76%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P     +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+ALW
Sbjct: 41  PETQPPRRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALW 100

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K+ +GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+
Sbjct: 101 KTTDGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 160

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN YREV  I  K  + + + +TL+ P+F TGT + DQ+ L+ 
Sbjct: 161 HAYQYIVESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKS 220

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK E
Sbjct: 221 LIAFSCLMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQE 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF ++ R +   A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIG
Sbjct: 281 NPHLWTPEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIG 340

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+P+F   ENPFPWMSE++DLKKE+NFFETRV EYQ G  L WD
Sbjct: 341 LDPIFASEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384


>gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
 gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
          Length = 399

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 263/357 (73%), Gaps = 5/357 (1%)

Query: 1   MANNTGLSPIQA-----GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
           +A+    +P  A     G  R+   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWM
Sbjct: 43  LADTAIAAPQSASHAPSGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWM 102

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M  D+ALWK  NGL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ
Sbjct: 103 PQEVNMNRDIALWKDPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 162

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
           +LLRQAFEEA+H+H +QYI+ SLGLDE E+F+ Y EV SI  K  + L +   +  P+F 
Sbjct: 163 FLLRQAFEEAIHTHAYQYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFH 222

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           TGT + DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H 
Sbjct: 223 TGTLETDQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHC 282

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +G+NA   + Y
Sbjct: 283 NFGIDLINQIKLENPQLWTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGY 342

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +++IANRR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 343 LRYIANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399


>gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida F1]
 gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1]
          Length = 415

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp.
           P1]
          Length = 358

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 254/350 (72%), Positives = 298/350 (85%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G   ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ
Sbjct: 9   DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F
Sbjct: 69  ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQY+  SLGLDEGELFN YR+VPSIT K  WAL+YTQ LS P F TGT + D
Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I
Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT+EF  + R MLHEA  LE+AYA +TMP+G +GL A SCEQY++FI +R
Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  QIGL PLF   +NPFPWMSE +DL+KEKNFFETRVTEY+ G  L+WD
Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358


>gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
          Length = 370

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 220/348 (63%), Positives = 278/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL   + G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL    NHWMP E+PM  D
Sbjct: 23  TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 83  IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SL +DEGE+FNMYREVPS+  KA WAL +T++L  P F TGT  ADQ 
Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK ENPHLWT EFQ  ++  + E+  LE+ YA +T+P+G +GLNA   E+Y++FI NRR 
Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   ENP PWMSE++DLKKEKNFFETRVTEY+ G  L W+
Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370


>gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf-5]
 gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Pseudomonas fluorescens Pf-5]
          Length = 415

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 216/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
 gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
          Length = 357

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 260/351 (74%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV M
Sbjct: 7   TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAM 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67  QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID 
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM FI +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITD 306

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGL P++   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 307 RRAQQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 360

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 266/351 (75%), Positives = 302/351 (86%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +  +GL  I+   +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV M
Sbjct: 10  SATSGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAM 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQA
Sbjct: 70  QADIALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQA 129

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YTQ L +P F TGT +A
Sbjct: 130 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEA 189

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 190 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 249

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLW++EFQ + R ML EA  LE+AY  ETMP+G +GLNA  CE+YM FI +
Sbjct: 250 INQIKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITD 309

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGL P+F  TENPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 310 RRAEQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360


>gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax
           ferrireducens T118]
 gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 400

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 264/345 (76%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           + +    +RVN  DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M  D+AL
Sbjct: 56  AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMTRDIAL 115

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 116 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 175

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +ADQ  L+
Sbjct: 176 THAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEADQTLLK 235

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+
Sbjct: 236 SLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKL 295

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENP LWT EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QI
Sbjct: 296 ENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQI 355

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 356 GLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400


>gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
 gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
          Length = 377

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/338 (61%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M  D+A WK    L
Sbjct: 40  GRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTAL 99

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDERL++KRNLGFF +++SL ANNIVL  YRH++ PE RQYLLRQ FEEA+H+H +QYI
Sbjct: 100 TDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQYI 159

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y+EV SI  K ++ + +  TL++P F TGT +ADQ+ L+ L VF  
Sbjct: 160 VESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFAC 219

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+ENPHLWT
Sbjct: 220 IMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLWT 279

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + ++     LE  YA  TMP+G +GLNA   ++Y++FIANRRC QIGL+ L++
Sbjct: 280 AEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRRCQQIGLDVLYQ 339

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 340 GATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377


>gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
 gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
          Length = 387

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/340 (61%), Positives = 263/340 (77%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D++LWK+ N
Sbjct: 48  GSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPN 107

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 108 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 167

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P F TGT +ADQ  L+ L VF
Sbjct: 168 YIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVF 227

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 228 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHL 287

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+++ R +  +A  LE AYA +TMP+G +GLNA   + Y++FIANRRC QIGLEPL
Sbjct: 288 WTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLEPL 347

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 348 FGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387


>gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter
           turnerae T7901]
 gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae
           T7901]
          Length = 453

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 218/346 (63%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA
Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P F TGT +ADQE 
Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 288 LRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 347

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA   E+Y+ FIANRR  
Sbjct: 348 KLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIANRRLA 407

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL+  +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W
Sbjct: 408 QLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453


>gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
 gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
          Length = 441

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 219/349 (62%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV M  
Sbjct: 93  AAGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTA 152

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+A WK+  GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE
Sbjct: 153 DVATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFE 212

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W+L +T  LS P+F TGT ++DQ
Sbjct: 213 EAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQ 272

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 273 TLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 332

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIANRR
Sbjct: 333 QIKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRR 392

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 393 LSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441


>gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
 gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
          Length = 421

 Score =  421 bits (1082), Expect = e-116,   Method: Composition-based stats.
 Identities = 218/347 (62%), Positives = 280/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G  R+ VDDK+M+N R+D+NQL+P KY WAW+KYL  C+NHWMP E+ M  D+
Sbjct: 75  GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           A WK  NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA
Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY + SLG+DE E+FNMYREVPSI  KA W++++TQ +S+P+F TGT +ADQE 
Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQI
Sbjct: 255 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDIINQI 314

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLWT EF+Q+   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI NRR  
Sbjct: 315 KLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFICNRRLA 374

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 375 QLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421


>gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ATCC 17978]
 gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2]
 gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 361

 Score =  421 bits (1082), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/346 (64%), Positives = 280/346 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 16  GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA
Sbjct: 76  ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT + DQ  
Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 196 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 255

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI NRR  
Sbjct: 256 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 315

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 316 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361


>gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Lens]
 gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens]
          Length = 367

 Score =  421 bits (1082), Expect = e-116,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
           JS42]
 gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           ebreus TPSY]
 gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42]
 gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY]
          Length = 396

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 207/351 (58%), Positives = 263/351 (74%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                 +      +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 46  TRTAPTASAAPQHRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 105

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 106 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 165

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI  K  + + + + +  P FTTGT ++
Sbjct: 166 FEEAIHTHAYQYIVESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPES 225

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 226 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 285

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENPHLWT EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 286 INQLKLENPHLWTAEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 345

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 346 RRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396


>gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ubonensis Bu]
          Length = 403

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 213/337 (63%), Positives = 266/337 (78%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 67  RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF  +
Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT 
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+  
Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium
           petroleiphilum PM1]
 gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 403

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/343 (60%), Positives = 260/343 (75%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
             AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK
Sbjct: 61  AAAGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWK 120

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             NGL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 121 DPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTH 180

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +QYI+ SLGLDE E+FN Y EV SI  K  + + +   +  P+F TGT + D+  L+ L
Sbjct: 181 AYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSL 240

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+EN
Sbjct: 241 IVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLEN 300

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P LWT EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGL
Sbjct: 301 PQLWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGL 360

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           E LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 361 EELFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403


>gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           solanacearum GMI1000]
 gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain)
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 400

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 262/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 52  NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 172 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 232 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 292 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 352 CQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400


>gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
 gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
          Length = 381

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/341 (59%), Positives = 263/341 (77%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           +   RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  
Sbjct: 41  SATGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDS 100

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +
Sbjct: 101 SALTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 160

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L V
Sbjct: 161 QYIVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIV 220

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPH
Sbjct: 221 FACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPH 280

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ 
Sbjct: 281 LWTPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDA 340

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 341 LYPGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CMR15]
          Length = 398

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 262/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 50  NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 109

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 110 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 169

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 170 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 229

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 230 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 289

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 290 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 349

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 350 CQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398


>gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
 gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
          Length = 411

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 206/338 (60%), Positives = 256/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 74  QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + L +   +S P F TGT + DQ  L+ L VF  
Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411


>gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
 gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
          Length = 369

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 227/352 (64%), Positives = 283/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +   TG   I+ G  R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ 
Sbjct: 13  IVGATGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEIS 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ
Sbjct: 73  MSADVALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L   SF TGT +
Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIE 192

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L+DL  FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID
Sbjct: 193 NDQRLLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWT EF+++   ++ +   +E  YA +TMP G +G+NA   E+Y+ FIA
Sbjct: 253 VINQIKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIA 312

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 313 NRRLNQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuG_Q212]
 gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuG_Q212]
          Length = 401

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Paris]
 gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris]
          Length = 367

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter
           hongkongensis HLHK9]
 gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter
           hongkongensis HLHK9]
          Length = 357

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 217/348 (62%), Positives = 267/348 (76%), Gaps = 1/348 (0%)

Query: 6   GLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            +SP  +G   RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ D
Sbjct: 10  AVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQRD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           + LWK  NGLTDDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEE
Sbjct: 70  IELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 129

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK  + + +  TL  P+F TGT ++DQ 
Sbjct: 130 AIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQL 189

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN 
Sbjct: 190 LLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINS 249

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK ENPHLWT EFQ++   +  +A  LE AYA +TMP+G +GLNA   ++Y+ FIANRR 
Sbjct: 250 IKQENPHLWTVEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRRM 309

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGLEPLF + +NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 310 QQIGLEPLFTHVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357


>gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12D]
 gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 402

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 210/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 416

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 216/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans C54]
          Length = 399

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 210/350 (60%), Positives = 268/350 (76%), Gaps = 1/350 (0%)

Query: 4   NTGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             GL+        RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M 
Sbjct: 50  AAGLTASGNATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMS 109

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAF
Sbjct: 110 RDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAF 169

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +AD
Sbjct: 170 EEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEAD 229

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+I
Sbjct: 230 QTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLI 289

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           N +K+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANR
Sbjct: 290 NTVKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANR 349

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC QIG+EPL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 RCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato K40]
 gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 415

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 274/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 387

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 261/341 (76%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A  +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  
Sbjct: 47  AQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 106

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 107 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 166

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L V
Sbjct: 167 QYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIV 226

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPH
Sbjct: 227 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 286

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE 
Sbjct: 287 LWTAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 346

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 347 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris BisB18]
 gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 386

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 265/350 (75%), Positives = 297/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I     RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 37  DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW S++GLT+DER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 97  ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L  P+F TGT +AD
Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENP LWT  FQ++ R ML EA  LE AY+ +TMP+GF+GLNA  CEQYM FI NR
Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386


>gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 493]
 gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii Dugway 5J108-111]
 gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 331]
 gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           RSA 493]
 gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 331]
          Length = 401

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 415

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 219/349 (62%), Positives = 283/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV M  
Sbjct: 67  AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE
Sbjct: 127 DIALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT + DQ
Sbjct: 187 EAIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+IN
Sbjct: 247 ELLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI NRR
Sbjct: 307 QIKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  F   +NPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 367 LAQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415


>gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuK_Q154]
 gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuK_Q154]
          Length = 401

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae B728a]
 gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
 gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 415

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 275/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
 gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
          Length = 444

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 280/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    G+  ++ G  RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 93  IDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 152

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D++LWK  +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 153 MTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 212

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT +
Sbjct: 213 AFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTE 272

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 273 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 332

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT+EF+ +   M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI+
Sbjct: 333 IINQIKLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIS 392

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 393 NRRLAQLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444


>gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain
           [Pseudomonas fluorescens SBW25]
          Length = 416

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
 gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
          Length = 383

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 262/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  + 
Sbjct: 45  TGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSA 104

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 105 LTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 164

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L VF 
Sbjct: 165 IVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFA 224

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 225 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLW 284

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ L+
Sbjct: 285 TPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALY 344

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 345 PGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383


>gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12J]
 gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J]
          Length = 402

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 210/349 (60%), Positives = 261/349 (74%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 54  NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+A WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 114 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 353

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 CQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens SBW25]
          Length = 416

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
 gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
          Length = 432

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP E+ 
Sbjct: 81  MDLAPGLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEIN 140

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ
Sbjct: 141 MTADVATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 200

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +LS P+F TGT +
Sbjct: 201 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTE 260

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 261 NDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 320

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT++FQ++   ML E T +EI YA +TMP+G +G+NA   E+Y+QFI 
Sbjct: 321 VINQIKLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFIC 380

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 381 NRRLAQLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432


>gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 415

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 274/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf0-1]
 gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 416

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 215/349 (61%), Positives = 275/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax
           paradoxus S110]
 gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110]
          Length = 391

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 206/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 55  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EVPSI  K  + + +   +S P+F TGT + DQ  L+ L VF  +
Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT 
Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF  
Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391


>gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
          Length = 382

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/343 (61%), Positives = 268/343 (78%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
                 R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK
Sbjct: 40  ASTSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWK 99

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           + NGLTDDER ++KRNLGFF +++SL ANNI L  YRH++NPECRQ+LLRQAFEEA+H+H
Sbjct: 100 NPNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTH 159

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +QYI+ SLGLDEGE+FNMY EV SI  K  + L +   L++P F TGT + DQ+ L+ L
Sbjct: 160 AYQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSL 219

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+EN
Sbjct: 220 IVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLEN 279

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           PHLWT  F+++ R ++ +   LE  YA +TMP+G +GLNA   ++Y++FIANRRC QIG+
Sbjct: 280 PHLWTPAFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGV 339

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + L++   NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 340 DMLYQGATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382


>gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
 gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
          Length = 402

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/349 (60%), Positives = 262/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 54  NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 353

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 CQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
 gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
          Length = 416

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 374

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 266/350 (76%), Positives = 294/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I     RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 25  DATGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQ 84

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAF
Sbjct: 85  ADIALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAF 144

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  PSF TGTK+ D
Sbjct: 145 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETD 204

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 205 QAFLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 264

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK EN HLW+K FQ + R ML +A  LE AY  +TMP G +GLN    EQYM+FIANR
Sbjct: 265 NQIKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIANR 324

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+FK  ENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 325 RCAQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374


>gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae 642]
 gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 415

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 275/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix
           cholodnii SP-6]
 gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6]
          Length = 402

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 255/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK  NGL
Sbjct: 65  RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER +IKRNLGFF +++SL ANNI L  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + Y   +  P F TGT + DQ  L+ L VF  
Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF 
Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402


>gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida W619]
 gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619]
          Length = 416

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
           pneumophila str. Corby]
 gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila str. Corby]
 gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b]
          Length = 367

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           longbeachae NSW150]
 gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit
           [Legionella longbeachae NSW150]
          Length = 366

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 223/352 (63%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +   TG   ++ G  R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ 
Sbjct: 13  LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ
Sbjct: 73  MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L+  +F TGT +
Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID
Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWT EF+++   ++ +   LE  YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL   +    NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           entomophila L48]
 gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           entomophila L48]
          Length = 415

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 275/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
 gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
          Length = 362

 Score =  417 bits (1073), Expect = e-115,   Method: Composition-based stats.
 Identities = 216/348 (62%), Positives = 277/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M  D
Sbjct: 14  TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALW+   GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 74  IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SLG+DE  +FNMYRE+P++  K  WAL +TQ+L+ P+F TGT + DQ 
Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT EF++    ++ E   LE  YA +T+P+G +GLNA     Y++FI NRR 
Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   +    NP PWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361


>gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida KT2440]
 gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida GB-1]
 gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
 gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1]
 gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1]
          Length = 416

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 68  AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE
Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT + D+
Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 415

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 214/349 (61%), Positives = 276/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C+NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Cupriavidus taiwanensis LMG 19424]
          Length = 396

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 262/349 (75%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N   +      +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 48  NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 107

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFE
Sbjct: 108 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 167

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ
Sbjct: 168 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 227

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN
Sbjct: 228 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 287

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRR
Sbjct: 288 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 347

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL+ LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 348 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 381

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 31  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 90

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 91  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 150

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 151 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 210

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 211 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 270

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 271 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 330

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 331 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379


>gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
 gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
          Length = 396

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 58  HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNG 117

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + + + +  P+F TGT + DQ  L+ L VF 
Sbjct: 178 IVESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFA 237

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW
Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 297

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T  F+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGL+ LF
Sbjct: 298 TPAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALF 357

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 394

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/356 (58%), Positives = 268/356 (75%), Gaps = 6/356 (1%)

Query: 3   NNTGLSPIQAG------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
             T  +P++A         RVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP
Sbjct: 39  QTTAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMP 98

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQY
Sbjct: 99  QEINMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQY 158

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           LLRQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F T
Sbjct: 159 LLRQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKT 218

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           GT + DQ  L+ L VF  V EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H N
Sbjct: 219 GTLETDQTLLRSLIVFACVMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCN 278

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           FGID+INQIK+ENP LWT  F+ + +++  +A  LE  YA +TMP+G +GLNAP  + Y+
Sbjct: 279 FGIDLINQIKLENPQLWTSAFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYL 338

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ++I NRRC QIGL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 339 RYICNRRCLQIGLDAMFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri DSM 4166]
          Length = 415

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 218/347 (62%), Positives = 281/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY EVPS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 349

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 261/343 (76%), Positives = 299/343 (87%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +  G  RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWK
Sbjct: 7   LDFGAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWK 66

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           S +GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+H
Sbjct: 67  SPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTH 126

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           TFQYI  SLGLDEGELFN YREVPSI  K +WAL+YT+ L  P+FTTGT +ADQEFL+DL
Sbjct: 127 TFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDL 186

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             FYVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK EN
Sbjct: 187 VAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAEN 246

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           PHLWT EFQQ+ R ML EA  LE+AYAH+TMP+  +GL+A  CEQYM FI +RR  Q+GL
Sbjct: 247 PHLWTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGL 306

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +P+F   ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD
Sbjct: 307 DPVFGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349


>gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 376

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 204/339 (60%), Positives = 258/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV   DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK    
Sbjct: 38  TTRVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTA 97

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 98  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 157

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y E+ SI  K ++ + +  TL++P F TGT + DQ+ L+ L VF 
Sbjct: 158 IVESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFA 217

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLW
Sbjct: 218 CIMEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLW 277

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + RT++ +   LE  YA +TMP+G +GLN+   ++Y++FI+NRRC QIGL+ +F
Sbjct: 278 TSEFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMF 337

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 338 PGVSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
 gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
          Length = 399

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 266/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NGL
Sbjct: 62  QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF  
Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT
Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+ 
Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
 gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
          Length = 398

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 60  HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 120 LTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +ADQ  L+ L VF 
Sbjct: 180 IVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFA 239

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 299

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 300 TAEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLF 359

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 360 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398


>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 416

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/345 (61%), Positives = 263/345 (76%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P     +R+N  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ L
Sbjct: 72  EPKADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIEL 131

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WKS NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H
Sbjct: 132 WKSPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 191

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI  SLGLDE E+FN Y EV SI  K  + + +   L+ P FTTGT   DQ+ L+
Sbjct: 192 THAYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLK 251

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+
Sbjct: 252 SLIVFSCLMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKM 311

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + + +   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QI
Sbjct: 312 ENPHLWTPEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQI 371

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLEP+F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 372 GLEPMFENEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp.
           JS666]
 gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 406

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 208/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 70  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI 
Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EV SI  K  + + + + +S P F TGT +ADQ  L+ L VF  +
Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT 
Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF  
Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406


>gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
 gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
          Length = 398

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/338 (61%), Positives = 264/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NGL
Sbjct: 61  QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF  
Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT
Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 300

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+ 
Sbjct: 301 PAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 360

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 361 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           citrulli AAC00-1]
 gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1]
          Length = 387

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 206/339 (60%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 49  HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L VF 
Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 422

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 213/349 (61%), Positives = 281/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL  ++ G  R+ V+DK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 74  TAGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 133

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFE
Sbjct: 134 DVALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFE 193

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SL +DEGE+FNMYRE+PSI  KA W+L++T +LS P+F TGT + DQ
Sbjct: 194 EAIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQ 253

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 254 ELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 313

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENP LW+++FQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+QFI+NRR
Sbjct: 314 QIKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFISNRR 373

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +Q+GL   ++  +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 374 LNQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422


>gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina ymp]
 gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp]
          Length = 416

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQF 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
 gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
          Length = 399

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/345 (59%), Positives = 258/345 (74%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +   A   RVN  DKR++N  +DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+AL
Sbjct: 55  AAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIAL 114

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAF+EA+H
Sbjct: 115 WKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIH 174

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLG+ E E FN Y E+  I AK ++ L +   L+ PSF TGT +ADQ  L+
Sbjct: 175 THAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLK 234

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H  FGID+IN +K+
Sbjct: 235 SLIAFACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVKL 294

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+++ + M  +A  LE AYA +TMP+G +GLN+    +YM+FI NRR +QI
Sbjct: 295 ENPHLWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQI 354

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GL  L++   NPFPWMSE++DLKKE NFFE RVTEYQ G  L WD
Sbjct: 355 GLGTLYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399


>gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas
           naphthalenivorans CJ2]
 gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans
           CJ2]
          Length = 387

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 261/351 (74%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A       I A  KRV   DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M
Sbjct: 37  APPLDTHEIPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNM 96

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGL+DDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 97  TRDIALWKDPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 156

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI  SLGLDEGE+FN Y EV SI  K  + + + + +S P F TGT ++
Sbjct: 157 FEEAIHTHAYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLES 216

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 217 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 276

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENP LWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y+++IAN
Sbjct: 277 INQLKLENPQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIAN 336

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 337 RRATQIGLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri A1501]
 gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501]
          Length = 415

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/347 (62%), Positives = 281/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI
Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 415

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 274/349 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV    
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
 gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
          Length = 416

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/347 (61%), Positives = 277/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 70  GLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT + D++F
Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQF 249

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
 gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
          Length = 355

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 218/347 (62%), Positives = 277/347 (79%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  DL
Sbjct: 9   GVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 68

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWK  +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA
Sbjct: 69  ALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 128

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT + D+  
Sbjct: 129 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKAL 188

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI
Sbjct: 189 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 248

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW  + + K+  M+ E   LEI YA +TMP+G +G+NA   E+Y+QFIANRR  
Sbjct: 249 KLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 308

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 309 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355


>gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
 gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
          Length = 363

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 264/351 (75%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A +       +  KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13  ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 73  TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + 
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENPHLWT EF+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
 gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
          Length = 363

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 263/351 (74%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A +       +  KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13  ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 73  TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + 
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENPHLWT EF+Q+   +   A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas
           arsenicoxydans]
 gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Herminiimonas arsenicoxydans]
          Length = 395

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 208/340 (61%), Positives = 266/340 (78%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 56  PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y E+ SI  K  + + +   L+ P+FTTGT + DQ  L+ L VF
Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 236 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 295

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT +F+ + + +   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+
Sbjct: 296 WTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 355

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 356 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395


>gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAO1]
 gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2]
 gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PA7]
 gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa LESB58]
 gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAb1]
 gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa PAO1]
 gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7]
 gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa]
 gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
 gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 415

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 215/347 (61%), Positives = 278/347 (80%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV M  D+
Sbjct: 69  GLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA
Sbjct: 129 ALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT + D++F
Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQF 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI
Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR  
Sbjct: 309 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia
           acidovorans SPH-1]
 gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1]
          Length = 363

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 262/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 25  HKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNG 84

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 85  LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 144

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI  K  + + + + +  P+F TGT + DQ  L+ L VF 
Sbjct: 145 IVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFA 204

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW
Sbjct: 205 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 264

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 265 TPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 324

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 325 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
 gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
          Length = 381

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 211/351 (60%), Positives = 270/351 (76%), Gaps = 2/351 (0%)

Query: 4   NTGLSPIQAGE--KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                P  AG   +R+ V+DK+++N  +DVNQL+P KY WAW+KYL AC NHWMP E+ M
Sbjct: 31  TAADEPAVAGSANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISM 90

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALW+  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQA
Sbjct: 91  SRDIALWRDPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQA 150

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI  K  + + +  TL++P F TGT + 
Sbjct: 151 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLET 210

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV
Sbjct: 211 DQQLLRSLIVFACIMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDV 270

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENP LWTK F+++   ++ +A  LE  YA +TMP+G +G+NAP  ++Y+++IAN
Sbjct: 271 INQIKMENPQLWTKAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIAN 330

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGL+ L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 331 RRCQQIGLDTLYPNANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 374

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 209/338 (61%), Positives = 267/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPSI AK  + L + +TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQ++  +++ +   LE AYA +TMP+G +GLNAP  + Y+++I NRR  Q+GL   + 
Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374


>gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta
           [Verminephrobacter eiseniae EF01-2]
 gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae
           EF01-2]
          Length = 399

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 209/359 (58%), Positives = 264/359 (73%), Gaps = 9/359 (2%)

Query: 3   NNTGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53
             TG++P  +G         ++RVN  DKR++N ++DVNQL+PLKY WAWEKYL++C NH
Sbjct: 41  PATGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANH 100

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           WMP EV M  D+ALWK+  GL+DDER +IKRNLGFF +++SL ANNIVL  YRH++ PEC
Sbjct: 101 WMPQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPEC 160

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           RQ+LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P 
Sbjct: 161 RQFLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPH 220

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           F TG+   DQ  L+ L VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+
Sbjct: 221 FHTGSAANDQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESM 280

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H NFGID+INQIK+ENP LWT  F+ +   +  +A  LE  YA +TMP G +G+NA   +
Sbjct: 281 HCNFGIDLINQIKLENPLLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFK 340

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Y+++IANRR  QIGLE LF    NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 341 GYLRYIANRRATQIGLETLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399


>gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 345

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/340 (61%), Positives = 272/340 (80%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
              RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   
Sbjct: 5   ATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPK 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 65  GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FNMY EVPS+ AK  + + + +TL+ P F TGT++ DQ+ L+ L VF
Sbjct: 125 YIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVF 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP L
Sbjct: 185 ATIMEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 244

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+ FQQ+   ++ +   LE AYA +TMP+G +GLNAP  ++Y+++I NRR  QIGL+P 
Sbjct: 245 WTEGFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQ 304

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ++  +NPFPWMSE++DLKKEKNFFE+RVT+YQ G  L WD
Sbjct: 305 WENVQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344


>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NG
Sbjct: 50  TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 109

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 110 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 169

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + +  TL+ P F TGT + DQ+ L+ L VF 
Sbjct: 170 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 229

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 230 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 289

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ +++   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGL+PLF
Sbjct: 290 TPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLF 349

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388


>gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
 gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
          Length = 360

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+  WK+  
Sbjct: 22  GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DE  ++KRNLGFF +++SL ANNIVL  YR ++ PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 81  QLSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y E+ SI  K  + + +  TL +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+EF+ +   +   A  LE AYA +TMP+G +GLNA   ++Y++FIANRR  QIGLEP+
Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 394

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 205/337 (60%), Positives = 260/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 58  RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F TGT +ADQ  L+ L VF  V
Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW  
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+ + +++  +A  LE  YA +TMP+G +GLNAP  +  +++I NRRC QIGL+ +F  
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           europaea ATCC 19718]
 gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718]
          Length = 382

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 216/340 (63%), Positives = 271/340 (79%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  N
Sbjct: 43  DHRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPN 102

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +Q
Sbjct: 103 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQ 162

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ S+GLDEGE+FN Y E+ SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 163 YIVESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVF 222

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHL
Sbjct: 223 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHL 282

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PL
Sbjct: 283 WTREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPL 342

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRV EYQ G  L WD
Sbjct: 343 FPEAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382


>gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium
           violaceum ATCC 12472]
 gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 360

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 207/352 (58%), Positives = 262/352 (74%), Gaps = 2/352 (0%)

Query: 2   ANNTGLSPIQA-GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A +   S + A G  RVNV DK+++N  +DVNQL+P K+ WAWEKYL+ C NHWMP EV 
Sbjct: 10  APSAAPSSMDAHGTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVN 69

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQ D+  WK+   LT+DE  ++KRNLGFF +++SL ANNIVL  YR +++PECRQ+LLRQ
Sbjct: 70  MQRDIEQWKT-GQLTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQ 128

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF+EA+H+H +QYI+ SLGLDEGE+FN Y EV SI  K  + + +   L +P F TGT +
Sbjct: 129 AFDEAIHTHAYQYIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVE 188

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 189 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 248

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN IK+ENP LWT  F+ +   +  +A  LE AYA +TMP+G +GLNA   ++Y++FIA
Sbjct: 249 LINTIKLENPLLWTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIA 308

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+PLF    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 309 NRRMQQIGLDPLFPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta
           [Janthinobacterium sp. Marseille]
 gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium
           sp. Marseille]
          Length = 392

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 210/340 (61%), Positives = 269/340 (79%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 53  PTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 112

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 113 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 172

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y EV SI  K  + + + +TL+ P F TGT + DQ+ L+ L VF
Sbjct: 173 YIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVF 232

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 233 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 292

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT +F+++ +T+   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+
Sbjct: 293 WTPQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 352

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392


>gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
 gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
          Length = 398

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 253/348 (72%), Positives = 287/348 (82%), Gaps = 1/348 (0%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  I  G  RV+V  KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D
Sbjct: 51  TGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQAD 110

Query: 65  LALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           +ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAFE
Sbjct: 111 IALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFE 170

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK  WAL+YT+ L+   F T T    Q
Sbjct: 171 EAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGAQ 230

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVIN
Sbjct: 231 DFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVIN 290

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT++F+ +   ML EA  LEIAYA +TMP G +GLNA  C +Y+ FIANRR
Sbjct: 291 QIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANRR 350

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           C+QIGL  LF    NPFPWMSEVIDLKKEKNFFETRVT+YQ G  L W
Sbjct: 351 CNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398


>gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 388

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 213/342 (62%), Positives = 279/342 (81%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  + RV V  K+M+NAR+DVNQL+P KY WAW+KYL  C+NHWMP EV M  D+ALWK 
Sbjct: 47  EGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEVNMSADIALWKD 106

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA+H+H 
Sbjct: 107 PNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHA 166

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QY + SLGLD+GE+FNMY+EVPS+  KA W++++   ++ P+F TGT +AD  FL++L 
Sbjct: 167 YQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTVEADTTFLKNLI 226

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNFGID+INQIKIENP
Sbjct: 227 AYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNFGIDMINQIKIENP 286

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HLWT E ++++  M+ + T LEIAYA +TMP+G +G+NA   E+Y+QFIANRR  QIGL 
Sbjct: 287 HLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQFIANRRLTQIGLP 346

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ++   +NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 347 EVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388


>gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
 gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
          Length = 354

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 259/353 (73%), Positives = 287/353 (81%), Gaps = 4/353 (1%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            T   PI  G  RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ 
Sbjct: 2   TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61

Query: 64  DLALWKS----KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           D+ALW+     K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR
Sbjct: 62  DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK  WAL+YT+ L+   F TGT 
Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +AD +FL+DL  FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI
Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D INQIK+ENPHLWT  FQ + R ML EA  LE+AY   T+P G +GL A  CEQYM FI
Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +RR  Q+GL PLF  T NPF WMSEV+DLKKEKNFFETRV EYQ G  L WD
Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354


>gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           eutropha C91]
 gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91]
          Length = 377

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 272/339 (80%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  NG
Sbjct: 39  HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 98

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 99  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 158

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ S+GLDEGE+FN Y E+ SI  K  + + +  TL++P+F TGT + DQ+ L+ L VF 
Sbjct: 159 IVESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFA 218

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 278

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PLF
Sbjct: 279 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 338

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 339 PEAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377


>gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 412

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 274/352 (77%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    G   ++    RV VDDK M+N R+D+NQL+P KY WAW+KYL    NHWMP EV 
Sbjct: 61  LDAKAGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVN 120

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 121 MTADIALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 180

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            FEEA+H+H +QY I SLG+DEG +FNMYRE+PS+  KA+W L+YT+ +S P FTTGT +
Sbjct: 181 GFEEAIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDE 240

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+  L++L  FY V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 241 TDKLLLKNLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 300

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLW ++ + ++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 301 MINQIKLENPHLWDEQMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIA 360

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGLE  F+   NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 361 NRRLVQIGLEEEFEGASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412


>gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
 gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
          Length = 336

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 206/336 (61%), Positives = 259/336 (77%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT+
Sbjct: 1   MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ 
Sbjct: 61  DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + DQ  L+ L VF  + 
Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E
Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           F+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF   
Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336


>gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 374

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374


>gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
 gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
          Length = 365

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M  D+ALWKS + L+
Sbjct: 30  RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           DDER +IKRNLGFF +++SL ANNIVL  YRH++NPECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 89  DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FNMY EVPSI  K  + L Y   L++P F TGT +ADQ  L+ L VF  +
Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT 
Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+++ R ++ +   LE AYA +TMP+G +GLNA   ++Y++FIANRRC QIG++ L++ 
Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE+IDLKKEKNFFE+RVTEYQ G  L WD
Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365


>gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 380

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 43  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380


>gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
          Length = 410

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 208/346 (60%), Positives = 264/346 (76%), Gaps = 4/346 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A   RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP EV M  D+A+WK 
Sbjct: 65  AASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKD 124

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H 
Sbjct: 125 PNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHA 184

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFL 186
           +QYI+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L
Sbjct: 185 YQYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELL 244

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + + VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK
Sbjct: 245 RSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIK 304

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +ENPHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  Q
Sbjct: 305 LENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQ 364

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           IGL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 IGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410


>gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
 gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
          Length = 402

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 207/346 (59%), Positives = 264/346 (76%), Gaps = 4/346 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A   RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP E+ M  D+A+WK 
Sbjct: 57  AASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKD 116

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H 
Sbjct: 117 PNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHA 176

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFL 186
           +QYI+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L
Sbjct: 177 YQYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELL 236

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + + VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK
Sbjct: 237 RSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIK 296

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +ENPHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  Q
Sbjct: 297 LENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQ 356

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           IGL+ +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 357 IGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402


>gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
 gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
          Length = 347

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           G +R+ V+DKR++N    DVNQL+P+KY WAWE YL+ C NHWMP+E+PM  D+ LW+S 
Sbjct: 8   GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F
Sbjct: 67  DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            YI+ SLGLDEGE+FNMYRE+P++  K  + ++ T+ +  P FTT T +  Q FL++L  
Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           +YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP 
Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EFQ++ + ++ EA  LE+AYA++ +P+G +GL AP   +Y+Q+IA+RR  +IGL+ 
Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +  ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD
Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346


>gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 434/Bu]
 gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2tet1]
 gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis 434/Bu]
 gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 346

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
           Reductase R2 From Chlamydia Trachomatis
          Length = 346

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HT+ YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
 gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
          Length = 357

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 256/335 (76%), Gaps = 3/335 (0%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            ++KR++N  + DVNQL+P+KY WAWE Y + C NHWMP+EVPM  D+  W++   LTDD
Sbjct: 25  AEEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRT-GSLTDD 83

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ S
Sbjct: 84  EKLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVES 143

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           LGLD+ E+FNMYRE+PSI  K  + +Q T  L  P+FTT T +  Q+FL++L  +Y++ E
Sbjct: 144 LGLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIME 203

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FYTGF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +F
Sbjct: 204 GIFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADF 263

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ EA  LE+AYA + +P+G VGLN      Y+Q IA+RR  +IGL   +  + 
Sbjct: 264 QERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGLPTQYG-SA 322

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NPFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 323 NPFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357


>gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D/UW-3/CX]
 gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276]
 gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276s]
 gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
           Reductase From Chlamydia Trachomatis
 gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9768]
 gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11222]
 gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11074]
 gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9301]
 gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-EC]
 gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-LC]
          Length = 346

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis A/HAR-13]
 gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70]
 gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70s]
 gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D(s)2923]
 gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis A/HAR-13]
 gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis Sweden2]
 gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/150]
 gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/11023]
          Length = 346

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Weiss]
 gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum MopnTet14]
 gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia
           muridarum Nigg]
          Length = 346

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/343 (57%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  SI AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   M+  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
 gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
          Length = 353

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 256/344 (74%), Gaps = 3/344 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           + A   R    +KR++N  + DVNQL+P+KY WAWE YL+ C NHWMPTEVPM  D+ +W
Sbjct: 12  LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+
Sbjct: 72  KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF Y++ SLGL EGE+FNMY EVP+I  K  + ++ T  + S  FTT T +  Q FL++
Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FYTGF  ILS  R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E
Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT++FQQ+   ++ EA  LEI YA + +P+G +GLN      Y+Q IA+RR  +IG
Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L  L+  + NPFPWMSE +DL KEKNFFETRVTEYQ G  L WD
Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353


>gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           caviae GPIC]
 gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           caviae GPIC]
          Length = 346

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +    KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LGGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NDLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDEGE+FN Y E  +I AK ++ +  T  + +P+F+T + +  ++F+++
Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +W++E Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 245 NPEVWSQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ Y++NPFPWMSE IDL KEKNFFETRVTEYQ    L W
Sbjct: 305 LKPIY-YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346


>gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           abortus S26/3]
 gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila
           abortus S26/3]
          Length = 349

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/343 (54%), Positives = 254/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE Y++ C N W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           psittaci 6BC]
          Length = 346

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346


>gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           felis Fe/C-56]
 gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila
           felis Fe/C-56]
          Length = 349

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/343 (54%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T+ +  P+F+T T +  ++F+++
Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +W+++ Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++  ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349


>gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae TW-183]
 gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae
           TW-183]
          Length = 365

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 30  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 88

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 89  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 148

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++L  +Y
Sbjct: 149 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 208

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 209 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 268

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 269 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 329 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365


>gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila
           psittaci RD1]
          Length = 349

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/303 (63%), Positives = 238/303 (78%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           C NHWMP E+ M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++
Sbjct: 1   CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK  + + +  TL
Sbjct: 61  APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           + P+FTTGT +ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+R
Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+H NFGID+INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA
Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              + Y++FI+NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L
Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300

Query: 350 KWD 352
            W+
Sbjct: 301 SWE 303


>gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 353

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 198/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM  D+ LW+S N 
Sbjct: 17  QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y
Sbjct: 76  LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLD  E+FNMYREV SI  K  + +  T+ +  P FTT T +  Q+F+++L  FY
Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ EG++FY+GF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN IK ENP  W
Sbjct: 196 VIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEENPEAW 255

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+E ++    M+ +A   EIAYA E +P G +GLNA    +Y+Q+IA+RR  +I L   +
Sbjct: 256 TEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIELPVQY 315

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 316 -RSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353


>gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae CWL029]
 gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae J138]
 gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae AR39]
 gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae
           CWL029]
 gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae
           J138]
 gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae LPCoLN]
          Length = 346

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 187/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 11  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++L  +Y
Sbjct: 130 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 310 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346


>gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
           pecorum E58]
 gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pecorum E58]
          Length = 346

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 187/338 (55%), Positives = 256/338 (75%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV++++KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LWKS NG
Sbjct: 11  KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SL LDE E+FN Y E  SI AK ++ +  T  +  P+F+T + +  ++F+++L  +Y
Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +KE Q++   ++  A  LEI YA + +PKG +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             ++NPFPWMSE +DL KEKNFFETRVTEYQ  A L W
Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346


>gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
 gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
          Length = 361

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 196/350 (56%), Positives = 254/350 (72%), Gaps = 3/350 (0%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NT  +             KR++N    DVNQL+PLKY WAWE YL+ C NHWMPTEVPM 
Sbjct: 14  NTTSTANTPPASEQQAQKKRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMT 73

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  W+S N LT  ERL+I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAF
Sbjct: 74  KDIETWRS-NKLTAGERLVIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAF 132

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+HTF YI+ SLGL E E+FNMY E+PSI  K  + +Q T  +  P F+T T +  
Sbjct: 133 EEAIHTHTFLYIVESLGLSEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGM 192

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q+FLQ+L  +Y++ EG++FY+GF  +LS  R N M G+ EQ+QYI+RDE++HLNFGID+I
Sbjct: 193 QKFLQNLIGYYIIMEGIFFYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLI 252

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           N IK ENP LWT EFQ     ++  A  LEIAYA++ +P G +GLNA S   Y+Q +A+R
Sbjct: 253 NGIKAENPELWTTEFQAHIYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADR 312

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  +IGL P+F ++ +PFPWMSE +DL KEKNFFETRVTEYQ  + L+W+
Sbjct: 313 RLERIGLAPIF-HSSHPFPWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361


>gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
 gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
          Length = 359

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 198/356 (55%), Positives = 249/356 (69%), Gaps = 7/356 (1%)

Query: 2   ANNTGLSPI----QAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
           AN    +P+         R   D KR++N  + DVNQL+PLKY WAWE YL+ C NHWMP
Sbjct: 6   ANTNSKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMP 65

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
           TEV M  D+  W+S + L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQY
Sbjct: 66  TEVGMTKDIETWRS-SKLSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQY 124

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           LLRQAFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I  K    ++ T  +    FTT
Sbjct: 125 LLRQAFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T +  Q FL++L  +Y++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLN
Sbjct: 185 DTFEGAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLN 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           FGID+IN IK ENP LWT EFQQ     +  A  LEI YA + +P G +GLN     +Y+
Sbjct: 245 FGIDLINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYV 304

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q IA+RR  +IGL   +  + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 305 QHIADRRLERIGLPAQYG-SANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359


>gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 342

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 192/339 (56%), Positives = 252/339 (74%), Gaps = 3/339 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            R N  DKR++N    DVNQL+PL+YGWAWE YL+ C NHWMP EV M  D+A+W+S   
Sbjct: 6   GRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRS-TS 64

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+ DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +
Sbjct: 65  LSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLH 124

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGL+E E+FNMY E+P I+ K  + +Q T  +  P F+T T    Q F+++L  +Y
Sbjct: 125 IVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYY 184

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +W
Sbjct: 185 VIMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIW 244

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EFQ +   ++ ++  LE  YA E +P+G +GL+A     Y+Q+IA+RR  +IGL   +
Sbjct: 245 TNEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQY 304

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L+WD
Sbjct: 305 G-SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342


>gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 344

 Score =  355 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 193/340 (56%), Positives = 255/340 (75%), Gaps = 5/340 (1%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             R   D K+++N    DVNQLLPLKY WAWE YL+ C NHWMP+EVPM  D+  WKS +
Sbjct: 9   TGRFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-D 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            +++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F 
Sbjct: 68  SISEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFL 127

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGL+E E+FNMYRE+ +I+ K  + +Q T+ L      T T    Q+FL++L  +
Sbjct: 128 YIVDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDG--ETKTLAGKQQFLKNLVGY 185

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP +
Sbjct: 186 YIIMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEI 245

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           W ++   +   ++ +A  LEIAYA E +P G +GLNA    +Y+Q++A+RR  +IGL  +
Sbjct: 246 WNEDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAI 305

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +K + NPFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 306 YK-SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344


>gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta
           [Methylacidiphilum infernorum V4]
 gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 361

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N
Sbjct: 25  KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F 
Sbjct: 84  RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDE E+FNMY EV SI+ K  + +  T+ +    F T + +  Q+F+++L  F
Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP +
Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT  FQ++   M+ E+  LE AYA + +P+G +GLN+   + Y+++IA+RR  +IG +  
Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +  ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W
Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361


>gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Pongo abelii]
          Length = 449

 Score =  353 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +      +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 116 AEPKTKAAAPDVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI-------------GDKEA 279

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
           sapiens]
          Length = 449

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 279

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens]
 gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens]
          Length = 449

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 279

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 350

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 199/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E       KR+LN +  DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS N
Sbjct: 14  EAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS-N 72

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF 
Sbjct: 73  RLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFH 132

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SL LD+ E+F+MY  V SI AK  + ++ T+ +    FTT T +  Q FL++L  F
Sbjct: 133 YIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGF 192

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GF  ILS  R N M GI EQ+QYI+RDES+HLNFGID+IN IK ENP +
Sbjct: 193 YIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEV 252

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+ +   M+ EA  LEI YA + +P G +GLNA     Y+ +IA+RR  +IGL+P 
Sbjct: 253 WTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQ 312

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +  T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W
Sbjct: 313 YN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350


>gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo
           laibachii Nc14]
          Length = 1611

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++++  ++P +  E    +  +  L    +   L P++    W+ Y  A  + W   E+ 
Sbjct: 49  LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W     ++D+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 109 LVHDMNDW---LNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E  +       +P +T KA WAL++            
Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKWC----------- 214

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D       +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F
Sbjct: 215 --DPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +++  + P             ++ +A ++E  +  +++P   +G+N+    QY++
Sbjct: 273 ACLMYSKLVNKLPE-------ASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R  H +G+  L+ +T NPF WM  +I L+ + NFFE RV EY +   +
Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWMD-MISLQGKTNFFEKRVGEYAKSGTI 375


>gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Nomascus leucogenys]
          Length = 434

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 101 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 160

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 161 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 217

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 218 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 264

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 265 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 323

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 324 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLM 377

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 378 LELGFGKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 421


>gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica]
          Length = 493

 Score =  348 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 157/351 (44%), Gaps = 28/351 (7%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
               ++         + +D+ +L        + P++Y   W  Y  A  + W   EV + 
Sbjct: 155 PTEPVTKAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLS 214

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  W++   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q  
Sbjct: 215 KDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 271

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS  +  +I +   D  E    FN    +P +  KA+WAL++              
Sbjct: 272 MENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------- 318

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             ++    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 319 GDNEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 378

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +         HL  K  ++K + ++  A  +E  +  E +P   +G+N    +QY++F+
Sbjct: 379 LMFK-------HLVHKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFV 431

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 432 ADRLMLELGFSKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 480


>gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
 gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
          Length = 410

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+   + P  A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 52  ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +   +  +    FN    +P I  KA+WAL++             
Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 217

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  V +   EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 218 -SDKNSTFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +        L  +  ++  R ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 277 CLLFSL-------LNNRPSKESVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 410

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A++  + P  A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 52  ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +   D  +    FN    +P I  KA+WAL++             
Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWI------------ 217

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  V +   EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 218 -SDKNSTFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +        L  +   ++ R ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 277 CLLFSL-------LNNRPSNEEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
           sapiens]
          Length = 423

 Score =  341 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
              G S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV + 
Sbjct: 85  PQAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 144

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 145 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 201

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  +    FN    +P +  KA+WAL++              
Sbjct: 202 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----------- 250

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 251 --RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 308

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +          L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+
Sbjct: 309 LMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 361

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 362 ADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 409


>gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus
           siliculosus]
          Length = 504

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 29/328 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +  A      L P+K+   W+ Y  A  + W   EV +  D   W+    LT +E+  
Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWE---ALTGNEQHF 237

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +  PE R +   Q   E++H   +  ++ +   D
Sbjct: 238 ISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKD 297

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN Y ++P +  KA+WA+++                      +  V +   EG
Sbjct: 298 KQERDNLFNAYNDIPCVKQKADWAMRWI--------------GSDATFAERLVAFAAVEG 343

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +          L  K  +
Sbjct: 344 VFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLF-------ASLENKPSR 396

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E ++    +P   +G+NA    QY++F+A+R    +G    +  T+N
Sbjct: 397 ETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQN 455

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF WM  +I L+ + NFFE RV EYQ+ 
Sbjct: 456 PFDWMD-LISLQGKTNFFEKRVGEYQKA 482


>gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A
           [Paracoccidioides brasiliensis Pb03]
          Length = 413

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 162/356 (45%), Gaps = 32/356 (8%)

Query: 2   ANNTGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
           ++ T + P++  +K     +    D+ +L        L PLKY   W+ Y  A  + W  
Sbjct: 54  SDATPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTA 113

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS T+  +I +   +  +    F+    +P I  KA+WA+++        
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWI------- 224

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 +  +       V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 225 ------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + +       HL  +   +  + ++ EA  +E  +  + +P   +G+NA    
Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFLTDALPCALLGMNAKLMC 331

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R    +G + ++  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKRVGDYQKAGVM 385


>gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
          Length = 328

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 178/297 (59%), Positives = 224/297 (75%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
             A  KRVNV +KR++N  +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK
Sbjct: 15  ASATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWK 74

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H
Sbjct: 75  DPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 134

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + D++ L+ L
Sbjct: 135 AYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSL 194

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+EN
Sbjct: 195 IVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLEN 254

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           PHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC  
Sbjct: 255 PHLWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGYLRFICNRRCRS 311


>gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
 gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
          Length = 493

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 150/345 (43%), Gaps = 29/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P      R  + D+ +L    +   L P+KY   WE Y     + W   EV    DL  
Sbjct: 153 EPSAEVASRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLID 212

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W     L  +E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VH
Sbjct: 213 WH---RLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVH 269

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  ++     +  E    F+    +P++  KA WA+++               +   
Sbjct: 270 SEMYSVLLDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWI--------------SSSN 315

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG+ F   F  I  L +   M G++     I RDE LH +F   + + 
Sbjct: 316 VFAERLVGFACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYS- 374

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  +  +++   ++ EA  LE  +  E +    +G+NA    QY++F+A+R  
Sbjct: 375 ------HLKNRLSRERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLL 428

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G E  +  T NPF WM E+I L+ + NFFE RV EYQ+   +
Sbjct: 429 VSLGYEKHYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAGVM 471


>gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 402

 Score =  340 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T + P++  +++    N +D+ +L        + P+KY   W+ Y  A  + W   EV +
Sbjct: 63  TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DLA W S   L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E    FN    +P +  KA WAL +             
Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWIN----------- 228

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             AD     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 229 --ADNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  K  QQ+   ++ +A  +E  +  + +P   +G+N    +QY++F
Sbjct: 287 CLMFS-------HLTNKPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G   ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 389


>gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
           sapiens]
 gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens]
 gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens]
 gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens]
 gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|62702173|gb|AAX93099.1| unknown [Homo sapiens]
 gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens]
 gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct]
          Length = 389

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 56  TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 219

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 220 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 278

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 279 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 332

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 333 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus]
          Length = 411

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                  +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+ 
Sbjct: 81  SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 139

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 140 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 197

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 +    
Sbjct: 198 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 244

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 245 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 300

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 301 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 357

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 358 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 398


>gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger
           CBS 513.88]
 gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger]
          Length = 396

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 101/355 (28%), Positives = 164/355 (46%), Gaps = 31/355 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
           A+     P++A +    + +    + +L        L P+KY   W+ Y  A  + W   
Sbjct: 44  ADKPVEKPVEAPKVAPGIKEMEASEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 103

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R + 
Sbjct: 104 EIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFY 161

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +HS T+  +I +   +  +    F+    +P I  KA+WA+++ Q       
Sbjct: 162 GFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQ------- 214

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 215 -----DRESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 268

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   + +       HL  +  +Q    ++ EA  +E  +  + +P   +G+N+    Q
Sbjct: 269 TDFACLLFS-------HLNNRPSKQVVEDIIVEAVGIEQEFLTDALPVALLGMNSKLMCQ 321

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           Y++F+A+R    +G +  +  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 322 YIEFVADRLLVALGNKKYYNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 374


>gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2
           [Leptosphaeria maculans]
          Length = 410

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 96/345 (27%), Positives = 153/345 (44%), Gaps = 27/345 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P  A   R     + +L        L P+KY   W+ Y  A  + W   E+ +  DL  
Sbjct: 57  KPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHD 116

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E VH
Sbjct: 117 WNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENVH 174

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +    FN    +P I  KA+WAL++                   
Sbjct: 175 SETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI-------------SDKNS 221

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE +H +F   + + 
Sbjct: 222 TFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSL 281

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                  L T+  ++  + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R  
Sbjct: 282 -------LNTRPSKESVQAIITEAVEIEKEFLSDALPCALLGMNATLMCQYIEFVADRLL 334

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G    +  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 335 LSLGNTKFYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus]
          Length = 386

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P        +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 57  EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQH 116

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+    L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 117 WE---ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIH 173

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 174 SEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEA 220

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 221 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 279

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 280 ------HLVHKPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 334 LELGFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides
           posadasii str. Silveira]
          Length = 408

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 27/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +  +   +P ++   +    ++ +L        L PLKY   W+ Y  A  + W   E+ 
Sbjct: 56  VKPSAPEAPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEID 115

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W  +  L DDER  I R L FFA+S+ +V  N+V      +  PE R +   Q
Sbjct: 116 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 173

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   +  +    F+    +P I  KA+WA+++ Q   S      
Sbjct: 174 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------ 227

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                        + +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 228 -------TFAQRLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +       HL  +   +  + ++ EA  +E  +  + +P   +G+N+    QY++
Sbjct: 281 ACLLFS-------HLRHRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 333

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 334 FVADRLLVALGNKKFYNAT-NPFDFMDN-ISLSGKTNFFEKRVGDYQKAGVM 383


>gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase
           [Ornithorhynchus anatinus]
          Length = 394

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +
Sbjct: 71  RVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 127

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 128 EKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 187

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              +  E    FN    +P +  KA+WAL++                 +    +  V + 
Sbjct: 188 YIKEPKEREFLFNAIETLPCVKKKADWALRWI-------------GDKEATYGERVVAFA 234

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +FK
Sbjct: 288 KPSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLLLELGFSKIFK 347

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 348 V-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 329

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  DL  W+S   LT DE+ 
Sbjct: 6   EEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F+    VP I  KA WAL++                  E   +  + +   E
Sbjct: 123 DSNEKNRLFHAIETVPCIAKKAEWALKWIDG--------------SESFAERIIAFACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + +K        K  
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLKK-------KLS 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G    +  + 
Sbjct: 222 EERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNVS- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ A + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKAAVMS 312


>gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR]
 gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H143]
 gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H88]
          Length = 413

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 162/356 (45%), Gaps = 32/356 (8%)

Query: 2   ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
              +   P +  +K +        D+ +L    +   L PLKY   W+ Y  A  + W  
Sbjct: 54  TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS T+  +I +   +  +    F+    +P I  KA+WA+++ +      
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 226 ------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + +       HL  +   +    ++ EA  +E  +  + +P   +G+NA    
Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMC 331

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R    +G + ++  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 385


>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus]
 gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Oxidizing Conditions. A Fully Occupied
           Dinuclear Iron Cluster.
 gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Reducing Conditions. A Fully Occupied
           Dinuclear Iron Cluster And Bound Acetate.
 gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
 gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus]
 gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus]
 gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus]
 gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus]
 gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus]
 gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus]
 gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus]
 gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus]
 gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus]
 gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus]
 gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                  +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+ 
Sbjct: 60  SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 +    
Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 280 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 337 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis]
          Length = 389

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 56  AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWI-------------GDKEA 219

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 220 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 278

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 279 ------HLVHKPSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 332

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 333 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
          Length = 406

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                 +P  A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 53  KPTVQATPKVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 113 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +    F+    +P I  KA+WAL++             
Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +       V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 219 -SDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL T+   +    ++ +A  +E  +  + +P   +G+N+    QY++F
Sbjct: 278 CMLFS-------HLNTRPNPKVIEDIIVDAVAIEQEFLTDALPCALLGMNSKLMCQYIEF 330

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G +  +  T NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 331 VADRLLVALGNKKYYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380


>gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Equus caballus]
          Length = 425

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  +
Sbjct: 102 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPE 158

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 159 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 218

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P +  KA+WAL++                 +    +  V + 
Sbjct: 219 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFA 265

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 266 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F 
Sbjct: 319 KPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVF- 377

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 378 RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 412


>gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS]
          Length = 408

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 158/352 (44%), Gaps = 27/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +  +    P ++   +    ++ +L        L PLKY   W+ Y  A  + W   E+ 
Sbjct: 56  VKPSAPEVPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEID 115

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W  +  L DDER  I R L FFA+S+ +V  N+V      +  PE R +   Q
Sbjct: 116 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 173

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   +  +    F+    +P I  KA+WA+++ Q   S      
Sbjct: 174 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------ 227

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                        + +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 228 -------TFAQRLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +       HL  +   +  + ++ EA  +E  +  + +P   +G+N+    QY++
Sbjct: 281 ACLLFS-------HLRHRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 333

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 334 FVADRLLVALGNKKFYNAT-NPFDFMDN-ISLSGKTNFFEKRVGDYQKAGVM 383


>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
 gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
          Length = 419

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  D+  WK  N +T
Sbjct: 88  KAQEKDEPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMT 145

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D+ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 146 DNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 205

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S   D  E    FN    +P I  KA WAL++                D+    +  V 
Sbjct: 206 DSYIKDPKEADFLFNAIENIPCIKKKAEWALRWIAD-------------DEALFAERLVA 252

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +       HL
Sbjct: 253 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HL 305

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +        ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + +
Sbjct: 306 NNRPNPAIVEKIITEAVTIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKV 365

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  T NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 400


>gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Ailuropoda melanoleuca]
          Length = 393

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 30/348 (8%)

Query: 8   SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            P Q   K +  +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+
Sbjct: 58  EPTQQETKVLAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 117

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E 
Sbjct: 118 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 174

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  +I +   D  E    FN    +P +  KA+WAL++                 
Sbjct: 175 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 221

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 222 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 281

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
                   HL  K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R
Sbjct: 282 K-------HLVHKPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 334

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 335 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 380


>gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 1 [Gallus gallus]
          Length = 392

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +  T ++ +   +     +++ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 53  SEGTPVTALCPPQVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 113 SKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E    FN    +P +  KA+WA+++             
Sbjct: 170 AMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI------------ 217

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 218 -GDKKATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +         HL  K  +++ + ++  A L+E  +  E +P   +G+N    +QY++F
Sbjct: 277 CLMFK-------HLIRKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 330 VADRLMLELGFRKIYKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 379


>gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora]
          Length = 410

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 27/342 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +     + +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 67  APTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N LTDDER  +   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 125 NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  +    FN    +P I  KA+WAL++                       
Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKSSTFAQ 231

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +     
Sbjct: 232 RLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS----- 286

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL  +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R    +G
Sbjct: 287 --HLNNRPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E +++ T NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 345 NEKVYRST-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 384


>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                  +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+ 
Sbjct: 60  SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 119 --ALKPDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 +    
Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 224 ERVMAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 280 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 337 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 414

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 27/347 (7%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T L     GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  D
Sbjct: 66  TLLRRKFVGEVDLPESEEPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 125

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L D+ER  I   L FFA+S+ +V  N++      +   E R +   Q   E
Sbjct: 126 LHDWN--NKLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMME 183

Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS T+  +I +   D  +    F+    +P I  KA+WAL +     S          
Sbjct: 184 NIHSETYSLLIDTYIKDPAQRDYLFDAVDTIPCIKKKADWALTWISDQKS---------- 233

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                 +  V +   EG++F   FA I  L +   M G+    + I RDE +H +F   +
Sbjct: 234 ---TFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLL 290

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + +K        +      + ++ EA  +E  +  + +P   +G+NA    QY++F+A+
Sbjct: 291 FSHLKR-------RPHPDVVKRIITEAVAIEQEFLTDALPVKLIGMNAELMCQYIEFVAD 343

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           R    +G E ++  T NPF +M  +I L+ + NFFE RV++Y +   
Sbjct: 344 RLLVSLGNEKVYNST-NPFDFMD-MISLQGKTNFFEKRVSDYAKAGV 388


>gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 406

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 27/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                 +P  A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 53  KPAVQEAPKVAPGIKEMEVNEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L DDER  + R L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 113 SKDLHDWN--NRLNDDERYFVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +    F+    +P I  KA+WAL++             
Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +       V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 219 -SDKESTFAQRLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +   +    ++ +A  +E  +  + +P   +G+N+    QY++F
Sbjct: 278 CLLFS-------HLNNRPNPKVIEDIIVDAVAIEQEFLTDALPCSLLGMNSKLMCQYIEF 330

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G +  +  T NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 331 VADRLLVALGNKKYYNST-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380


>gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
 gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
          Length = 400

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 29/344 (8%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
            +    ++   D + +L+   D   + P+KY   WE Y  A  + W   EV + DD+  W
Sbjct: 67  ELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHW 126

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L+D ER  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS
Sbjct: 127 E---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHS 183

Query: 129 HTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  ++ +   D  E    F+    VP I  KA WA+++                 +  
Sbjct: 184 EMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWI--------------GSESS 229

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 230 FPERLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML 289

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             +           + + ++ EA  +E  +  + +P   +G+N+    QY++F+A+R   
Sbjct: 290 SKQLEE-------SRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLV 342

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +G    +  T NPF +M  +I L+ + NFFE RV +YQ+   +
Sbjct: 343 ALGCSKAYNVT-NPFDFMD-MISLQGKTNFFEKRVGDYQKSGVM 384


>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa]
 gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W++   LT DE+ 
Sbjct: 6   EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F+    VP +  KA WAL++                  E   +  V +   E
Sbjct: 123 DSEEKNRLFHAIETVPCVAKKARWALRWIDG--------------SESFAERLVAFACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLS 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 222 EEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 414

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 158/345 (45%), Gaps = 27/345 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  
Sbjct: 67  SAAVAPGIKAEEVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 126

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +H
Sbjct: 127 WN--NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIH 184

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +    FN    +P I  KA+WA+++ Q               + 
Sbjct: 185 SETYSLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQD-------------KES 231

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 232 TFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--- 288

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
               + HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R  
Sbjct: 289 ----HSHLKNRASKQVIYDIITDAVAIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 344

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G E ++K T NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 345 VALGNEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 387


>gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
 gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
          Length = 529

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P      +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 181 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 237

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q 
Sbjct: 238 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 295

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   ++ +    F     +P I  KA+WA+++ Q           
Sbjct: 296 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 344

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 345 -DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 402

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 403 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 455

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 456 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 504


>gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
 gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
          Length = 394

 Score =  335 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 93/338 (27%), Positives = 155/338 (45%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            R  + ++ +L+   D   + P+KY   WE Y  A  + W   EV + DD+  W+    L
Sbjct: 67  PRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWE---KL 123

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +D ER  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +
Sbjct: 124 SDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLL 183

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + S   D  E    F+    VP I  KA WA+++                      +  V
Sbjct: 184 LESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWI--------------GSDSVFSERLV 229

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   F  I  L +   M G+    + I RDE LH +F   + +        
Sbjct: 230 AFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLFSM------- 282

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L T+  + + + ++ EA  +E  +  E +P   +G+N+    QY+QF+A+R    +G   
Sbjct: 283 LNTRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFVADRLLVSLGCAK 342

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +    NPF +M E+I L+ + NFFE RV +YQ+   +
Sbjct: 343 QYNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNGVM 378


>gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis]
 gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis]
          Length = 386

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K     D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 53  TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 Q 
Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRWI-------------SDKQA 216

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 217 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFR- 275

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++   ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 276 ------HLVHKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +FK + NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 373


>gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis ER-3]
 gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188]
          Length = 413

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 32/356 (8%)

Query: 2   ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
              T L P +  +K +        ++ +L    +   L PLKY   W+ Y  A  + W  
Sbjct: 54  KETTPLRPEETEKKALTGMKALEAEEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCF 171

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS T+  +I +   +  +    F+    +P I  KA+WA+++        
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWI------- 224

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 +  +       V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 225 ------EDKESSFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + +       HL  +   +    ++ EA  +E  +  + +P   +G+NA    
Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMC 331

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R    +G + ++  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 385


>gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8]
           [Aspergillus nidulans FGSC A4]
          Length = 406

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 31/355 (8%)

Query: 2   ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
                  P++  +  ++V     ++ +L        L P+KY   W+ Y  A  + W   
Sbjct: 50  TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ +  DL  W   N L +DER  I R L FFA+S+ +V  N++      +  PE R + 
Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +H+ T+  +I +   +  +    F+    +P I  KA+WA+++ Q       
Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQD------ 221

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +       V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 222 -------KESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   + +       HL  +  ++    ++ EA  +E  +  + +P   +G+NA    Q
Sbjct: 275 TDFACLLFS-------HLNWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQ 327

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           Y++F+A+R    +G +  F  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 328 YIEFVADRLLVALGNKKYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380


>gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleoside-diphosphate reductase R2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum]
          Length = 329

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L +  D   + P++Y   WE Y  A  + W   EV +  D   W++   LT  ER 
Sbjct: 6   EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S   
Sbjct: 63  FITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F      P +  KA WAL++                  E   +  V +   E
Sbjct: 123 DSDEKSRLFRAVETNPCVEKKAKWALRWIDG--------------SETFAERLVAFACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++       TK  
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLT 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     +Y++F+A+R    +G + L+   +
Sbjct: 222 EERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN-AQ 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53
           inducible) [Ornithorhynchus anatinus]
          Length = 401

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  +   ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 74  ENGLQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 130

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 131 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 190

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +    FN    +P +  KA+W+L++                 Q    +  
Sbjct: 191 LIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIAD-------------RQSTFGERV 237

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 238 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVK--- 294

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  + K + ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 295 ----KPSEDKVKEIIIDAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVELGFS 350

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +F +++NPF +M E I L+ + NFFE RV+EYQ+ A + 
Sbjct: 351 KVF-HSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVMS 388


>gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           acridum CQMa 102]
          Length = 411

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 68  APGIKAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 125

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 126 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 185

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  +    FN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 186 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 233

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +       
Sbjct: 234 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL------- 285

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           + HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 286 HSHLKNRASKQIIHDIITDAVAIEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 345

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            E ++K T NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 346 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 384


>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa]
 gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W++   LT DE+ 
Sbjct: 6   EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  NI     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F+    VP +  KA WAL++                  E   +  + +   E
Sbjct: 123 DSTEKNRLFHAIETVPCVAKKAEWALRWIDG--------------GESFAERLIAFACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLS 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ EA  +E  +  +++P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 222 EERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
 gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
          Length = 401

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 159/352 (45%), Gaps = 27/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +  +    P +A   +    ++ +L        L PLKY   W+ Y  A  + W   E+ 
Sbjct: 49  IKPSAPEEPKKALSPKELEAEEPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEID 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W  +  L DDER  I R L FFA+S+ +V  N+V      +  PE R +   Q
Sbjct: 109 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQ 166

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   +  +    F     +P I  KA+WA+++ Q          
Sbjct: 167 IMMENIHSETYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQ---------- 216

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 217 --DKDSTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 273

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + + I+        +        ++ EA  +E  +  + +P   +G+N+    QY++
Sbjct: 274 ACLLFSHIR-------HRPTPAAVEAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 326

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 327 FVADRLLVALGNKKFYHAT-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 376


>gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus
           norvegicus]
 gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus
           norvegicus]
          Length = 390

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                + +++++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+ 
Sbjct: 60  SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 +    
Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 280 ---HLVHKPSEQRVKEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 337 GFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
 gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
          Length = 414

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
               G   + A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 61  KREEGDKAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 120

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N + DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 121 SKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 178

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +    FN    +P I  KA+WAL +             
Sbjct: 179 MMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALTWI------------ 226

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +       V + V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 227 -TDKKSTFATRLVAFAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 285

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +  +Q  + ++ +A  +E  +  E +P G +G+NA   +QY++F
Sbjct: 286 CLLFS-------HLNNRPSKQTVQDIVTDAVNIEQEFLTEALPCGLLGMNATLMKQYIEF 338

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G E ++K T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 VADRLLVALGNEKVYKAT-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVM 387


>gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 1 [Canis
           familiaris]
          Length = 394

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 30/348 (8%)

Query: 8   SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            P +   K +  + +++ +L        + P++Y   W+ Y  A  + W   EV +  D+
Sbjct: 59  EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E 
Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  +I +   D  E    FN    +P +  KA+WAL++                 
Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 222

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 223 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 282

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
                   HL  K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R
Sbjct: 283 K-------HLVHKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 335

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 336 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group]
          Length = 345

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 20  EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 78  FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 183

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 236

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327


>gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
 gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
          Length = 409

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 27/345 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   A   + +  D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  
Sbjct: 62  SAAVAPTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 121

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N + DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +H
Sbjct: 122 WN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 179

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +    FN    +P+I  KA+WAL++     S             
Sbjct: 180 SETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWITDQKS------------- 226

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 227 TFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS- 285

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R  
Sbjct: 286 ------HLNNRPSKQIIEDIIVDAVRIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 339

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G E +++ T NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 340 VALGNEKVYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 382


>gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
 gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa]
 gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
          Length = 410

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 156/342 (45%), Gaps = 27/342 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 67  APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 125 NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  +    FN    +P I  KA+WAL++                       
Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKSSTFAQ 231

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +     
Sbjct: 232 RLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS----- 286

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL  +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R    +G
Sbjct: 287 --HLNNRPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E +++ T NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 345 NEKIYRST-NPFDFM-ENISLGGKTNFFEKRVGDYQKAGVMN 384


>gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa
           Japonica Group]
 gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group]
          Length = 345

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 20  EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 78  FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 138 DDVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 183

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 236

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327


>gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
 gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
          Length = 401

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L +DER 
Sbjct: 71  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERY 128

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIK 188

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +    F+    +P I  KA+WA+++ Q   S                   V +   E
Sbjct: 189 EPKQRTYLFDAIDNIPCIAKKADWAIKWIQDQES-------------TFGQRLVAFAAVE 235

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 236 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPS 288

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +Q    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G    F ++ 
Sbjct: 289 KQVVEDIIVEAVAIEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYF-HST 347

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 348 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 378


>gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
          Length = 389

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  +
Sbjct: 66  SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKSE 122

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P +  KA+WAL++                      +  V + 
Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKAATYGERVVAFA 229

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F 
Sbjct: 283 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF- 341

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
          Length = 333

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 158/336 (47%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N L++D
Sbjct: 3   SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSND 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +
Sbjct: 61  ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDT 120

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    F     +P +T KA WA+++                  +   +  V + 
Sbjct: 121 YIKDNKERDHLFRAIETIPCVTKKAEWAMKWING--------------SQSFAERIVAFA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++       T
Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------T 219

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++ 
Sbjct: 220 KLDEERLKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYG 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            + NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 280 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313


>gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 409

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 164/351 (46%), Gaps = 27/351 (7%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
               +  + A E +  + D+ +L        L P+KY   W+ Y  A  + W   E+ + 
Sbjct: 57  KKEEIKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLS 116

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q  
Sbjct: 117 KDLHDWS--NKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIM 174

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   +  +    FN    +P I  KA+WAL++              
Sbjct: 175 MENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------S 222

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 223 DKDASFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 281

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + +       HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 282 LLFS-------HLNNRPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFV 334

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G + +++ T NPF +M E I L  + NFFE RV EYQ+   + 
Sbjct: 335 ADRLLVALGNDKIYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVMN 383


>gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi]
          Length = 390

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 160/350 (45%), Gaps = 29/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            +T LS ++  E+  +   + +L        + P++Y   W+ Y  A  + W   EV + 
Sbjct: 53  PSTALSEVE-PEQPFDPSIEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLS 111

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  W   + L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q  
Sbjct: 112 KDMKDW---DSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 168

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  E    FN    +P +  KA+WA+ +              
Sbjct: 169 MENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWI------------- 215

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
            + +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 216 SSKKANYGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 275

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +          L  K  +++   ++ +A ++E  +  + +P   +G+N     QY++F+
Sbjct: 276 LMFKY-------LVQKPSRKRVTDIIRDAVMIEQEFLTKALPVDMLGMNCELMSQYIEFV 328

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G E ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 329 ADRLLVELGCEKVYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 376


>gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 413

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 27/346 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P+     +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  
Sbjct: 66  KPVVVPGIKEQEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 125

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N + +DE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +H
Sbjct: 126 WN--NKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 183

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +    FN    +P I  KA+WAL++                ++ 
Sbjct: 184 SETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI-------------SDEKS 230

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 231 SFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYS- 289

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  +  +Q  + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R  
Sbjct: 290 ------HLKNRPSKQVIQDIIVDAVQIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 343

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G + ++K + NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 344 VALGNDKVYK-SSNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 387


>gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980]
 gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 407

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 61  APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 118

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 119 NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   ++ +    FN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 179 SLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +     
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFS----- 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL  +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 281 --HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADRLLVTLG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            + ++K + NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 NDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis]
 gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis]
          Length = 386

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K   ++D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 53  TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL +                 Q 
Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWI-------------GDKQA 216

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 217 TFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 275

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 HL  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 276 ------HLIRKPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G + +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus
           Af293]
 gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus Af293]
 gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus A1163]
          Length = 405

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +    F+    +P I  KA WA+++                 +       V +   E
Sbjct: 190 EPKQRTYLFDAIDTIPCIRKKAQWAMRWI-------------SDKESTFAQRLVAFAAVE 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  F  + 
Sbjct: 290 KKVIEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SP 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
          Length = 406

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 31/355 (8%)

Query: 2   ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
                  P++  +  ++V     ++ +L        L P+KY   W+ Y  A  + W   
Sbjct: 50  TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ +  DL  W   N L +DER  I R L FFA+S+ +V  N++      +  PE R + 
Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +H+ T+  +I +   +  +    F+    +P I  KA+WA+++ Q       
Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQD------ 221

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +       V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 222 -------KESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   + +       HL  +  ++    ++ EA  +E  +  + +P   +G+NA    Q
Sbjct: 275 TDFACLLFS-------HLNWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQ 327

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           Y++F+A+R    +G +  F  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 328 YIEFVADRLLVALGNKEYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380


>gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
 gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
          Length = 409

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 153/342 (44%), Gaps = 28/342 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +     + +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W  +
Sbjct: 61  APTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR 120

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
             L DDER  I   L FFA+S+ +V  N+V       +  PE R +   Q   E +HS T
Sbjct: 121 --LNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSET 178

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +  +    FN    +P I  KA+WAL++                      
Sbjct: 179 YSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWI-------------SDKNSTFA 225

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE +H +F   + +    
Sbjct: 226 NRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSL--- 282

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L T+  +   + ++ EA  +E  +  E +P   +G+N+    QY++F+A+R    +
Sbjct: 283 ----LNTRPSKDAVKAIITEAVEIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLAL 338

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 GNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum]
          Length = 397

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 101/332 (30%), Positives = 159/332 (47%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   W+ Y  A  + W+  E+ +  D+  W  +  L DDER 
Sbjct: 66  DEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWSDR--LNDDERY 123

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E VHS T+  +I +   
Sbjct: 124 FISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIK 183

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  +    F+    +P I  KA+WA+++ +            D +  F Q L  F  V E
Sbjct: 184 DPKQRTYLFDAIDTIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-E 230

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G++   + I RDE LH +F   + N       HL  +  
Sbjct: 231 GIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFN-------HLNNRPS 283

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           QQ  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G    +  T 
Sbjct: 284 QQAVQDIIVEAVGIEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLGNPKFYNAT- 342

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 343 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 373


>gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina
           98AG31]
          Length = 385

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W  Y  A  + W   E+ +  D+  W+  N L DDE+ 
Sbjct: 52  EEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKH 109

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N++      +   E R +   Q   E +HS  +  +I +   
Sbjct: 110 FIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVR 169

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  E    F+    +P I  KA+WAL++                 Q    +  + +   E
Sbjct: 170 EPIERSHLFDAIDTIPCIRKKADWALKWI-------------SDKQSTFGERLIAFAAVE 216

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 217 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLERRPH 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G +  +   E
Sbjct: 270 PDTVQAIISQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNDKFYN-AE 328

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E+I L  + NFFE RV++Y +   + 
Sbjct: 329 NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 360


>gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Meleagris gallopavo]
          Length = 353

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  + + ++ +L        + P+++   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 26  ENGLKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 82

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 83  LKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSL 142

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +    FN    +P +  KA+WAL++              +       +  
Sbjct: 143 LIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWI-------------EDRHSTFGERV 189

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +       
Sbjct: 190 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY------ 243

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L  +  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 244 -LVNRPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFS 302

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 303 KVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339


>gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           oryzae RIB40]
 gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
 gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae]
 gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
          Length = 405

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 155/355 (43%), Gaps = 31/355 (8%)

Query: 2   ANNTGLSPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
              T   P +   K    +    ++ +L        L P+KY   W+ Y  A  + W   
Sbjct: 50  TKTTVEKPTEVSSKIASIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           E+ +  DL  W   N L DDER  I R L FFA+S+ +V  N++      +  PE R + 
Sbjct: 110 EIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174
             Q   E +H+ T+  +I +   +  +    F+    +P I  KA+WA+++ Q   S   
Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES--- 224

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                           V +   EG++F   FA I  L +   M G+    + I RDE LH
Sbjct: 225 ----------TFGQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            +F   + +       HL  +   Q    ++ EA  +E  +  + +P   +G+N+    Q
Sbjct: 275 TDFACLLFS-------HLNNRPDPQIVEDVIVEAVSIEKEFLTDALPCALLGMNSNLMCQ 327

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           Y++F+A+R    +G    F  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 328 YIEFVADRLLVALGNNKYFNAT-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 380


>gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
          Length = 405

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +    F+    +P I  KA WA+++                 +       V +   E
Sbjct: 190 EPKQRAYLFDAIDTIPCINKKAQWAMRWI-------------SDKESSFGQRLVAFAAVE 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  + 
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SP 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus]
 gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus]
 gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus]
          Length = 390

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                + +++++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+ 
Sbjct: 60  SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 +    
Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +Q+ + ++  +  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 280 ---HLVHKPSEQRVKEIITNSVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 337 GFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
 gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
          Length = 417

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 98/343 (28%), Positives = 158/343 (46%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +   E +    D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 79  VHRHELKAMEKDEPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN 138

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L D+ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS 
Sbjct: 139 --NRLNDNERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSE 196

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I S   D  E    FN    +P I  KA+WAL++                D    
Sbjct: 197 TYSLLIDSYIKDPKEADFLFNAIDNIPCIRKKADWALRWI-------------SDDDALF 243

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +   
Sbjct: 244 GERLVAFAAVEGIFFSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFS--- 300

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +   +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 301 ----HLQNRPDAEIVEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVA 356

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G + ++  T NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 357 LGNKKVYNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397


>gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Ailuropoda melanoleuca]
          Length = 387

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 57  DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 114

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 115 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 173

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 174 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 220

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 221 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 277

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 278 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 333

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 334 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 373


>gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 362

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 28/346 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   A E   ++D++ +L        + P++Y   W+ Y  A  + W   EV +  DL 
Sbjct: 28  MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E V
Sbjct: 88  HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144

Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  +    FN    +P +  KA+WAL++              +  +
Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWI-------------EDRE 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 192 STFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                   L  +  +++   ++  A  +E  +  E +P G +G+N    +QY++F+A+R 
Sbjct: 252 Y-------LVNRPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 305 LMELGFSKVFNV-ENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 348


>gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera]
          Length = 329

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 29/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W++   LT D
Sbjct: 3   SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S
Sbjct: 60  EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLES 119

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    F+    +P +  KA WAL++                  E   +  + + 
Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRWIDG--------------SETFAERLLAFA 165

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++        
Sbjct: 166 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------N 218

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ + ++ ++  +E  +  + +P   VG+N+    QY++F+A+R    +G   ++ 
Sbjct: 219 KLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYN 278

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            + NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 279 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 353

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A E  +   ++ +L        + P+++   W+ Y  A  + W   EV +  DL  W  
Sbjct: 23  SAAENGLKPHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 80

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 81  -NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEM 139

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 140 YSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWI-------------EDRESTFG 186

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +    
Sbjct: 187 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY--- 243

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  +  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 244 ----LVNRPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMEL 299

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 300 GFSKVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339


>gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa
           Japonica Group]
          Length = 339

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   S+   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 321


>gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
 gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
          Length = 405

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +    F+    +P I  KA WA+++                 +       V +   E
Sbjct: 190 EPKQRTYLFDAIDTIPCIAKKAQWAMRWI-------------SDKESTFAQRLVAFAAVE 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  E +P   +G+N+    QY++F+A+R    +G +  +  + 
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SS 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small
           chain B; AltName: Full=Ribonucleoside-diphosphate
           reductase R2B subunit; AltName: Full=Ribonucleotide
           reductase small subunit B
 gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana]
          Length = 333

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+D
Sbjct: 3   SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTND 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +
Sbjct: 61  ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDT 120

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    F     +P +T KA WA+++                  +   +  V + 
Sbjct: 121 YIKDNKERDHLFRAIETIPCVTKKAEWAMKWING--------------SQSFAERIVAFA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++       T
Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------T 219

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++ 
Sbjct: 220 KLDEDRLKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYG 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            + NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 280 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASIMS 313


>gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 2 [Gallus gallus]
          Length = 384

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  +E
Sbjct: 62  AEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEE 118

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 119 KYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 178

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    FN    +P +  KA+WA+++                 +    +  V +  
Sbjct: 179 IKDSKEREFLFNAIETLPCVKKKADWAIRWI-------------GDKKATYGERVVAFAA 225

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K
Sbjct: 226 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRK 278

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K 
Sbjct: 279 PSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV 338

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 339 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 371


>gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 389

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A  +     D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W 
Sbjct: 45  LKAKWEEAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 104

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N LT DE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS 
Sbjct: 105 --NRLTSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSE 162

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   +  +    FN    +P I  KA+WA+++ Q            D D  F 
Sbjct: 163 TYSLLIDTYIKEPSQRTYLFNAIETIPCIRKKADWAIRWIQ------------DKDSSFA 210

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K
Sbjct: 211 QRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLK 269

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R    
Sbjct: 270 G-------RASKQVIQDIITDAVTIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVA 322

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G E ++K + NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 323 LGNEKVYK-SANPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 363


>gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
 gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
          Length = 376

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +   D+ +L        + P+ Y   W  Y  A  + W   EV +  DL  W   +GL 
Sbjct: 51  ELEKQDEPLLRENPRRFVMFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLK 107

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I
Sbjct: 108 PEERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLI 167

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA+WAL +                      +  V 
Sbjct: 168 DTYIKDPSERDRLFNAVETMPCIKRKADWALNWI-------------SNRSATFGERIVA 214

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +       HL
Sbjct: 215 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFS-------HL 267

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  Q + R ++ +A ++E  +  + +P   +G+N    ++Y++F+A+R   ++G E +
Sbjct: 268 VNKPSQARVRQIICDAVVIEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKV 327

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  +ENPF +M E I L+ + NFFE RV EYQ+   +
Sbjct: 328 YN-SENPFDFM-EHISLEGKTNFFEKRVGEYQKAGVM 362


>gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 418

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   +    + P+KY   W+ Y  A  + W   E+ +  D+  W   N L D+ER 
Sbjct: 90  EEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERY 147

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 148 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIK 207

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WAL++                D     +  V +   E
Sbjct: 208 DPKEADFLFNAIENIPCIKKKADWALRWIND-------------DDALFGERLVAFAAVE 254

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G++   + I RDE LH +F   + +       HL  +  
Sbjct: 255 GIFFSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFS-------HLQNRPD 307

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G + ++    
Sbjct: 308 PEIVEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA- 366

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 367 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397


>gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 400

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 41/365 (11%)

Query: 2   ANNTGLSPIQAGEKRVNV--------------DDKRMLNARSDVNQLLPLKYGWAWEKYL 47
             N  L P+    ++                   + +L        + P+KY   W+ Y 
Sbjct: 35  KENASLKPVDTPIEKPTEKALENKPLTVKELEATEPLLQENPHRFVMFPIKYHEIWQMYK 94

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
            A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      
Sbjct: 95  KAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSAE 152

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQ 164
           +  PE R +   Q   E +HS T+  +I +   +  +    F+    +P IT KANWA++
Sbjct: 153 VQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCITKKANWAIR 212

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           +     S                   V +   EG++F   FA I  L +   M G+    
Sbjct: 213 WINDRES-------------TFASRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSN 259

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I RDE LH +F   + +       H+  +   +    ++ EA  +E  +  + +P   
Sbjct: 260 ELISRDEGLHTDFACLLFS-------HMNHRPDPKVVEEIIVEAVGIEQEFLTDALPCAL 312

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L  + NFFE RV +YQ
Sbjct: 313 LGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLAGKTNFFEKRVGDYQ 370

Query: 345 QGAEL 349
           +   +
Sbjct: 371 KAGVM 375


>gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
          Length = 366

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 28/351 (7%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +   +P++     ++  ++ +L +      LLPL+Y   W  Y  A  + W   EV ++ 
Sbjct: 29  DDPTTPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRK 88

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D   W     L  DE+  I   L FFA+S+ +V  N+V    + +   E R +   Q   
Sbjct: 89  DANDWA---KLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAI 145

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E VHS  +  +I +   D  E    FN    +P +  KA+WAL++     SP        
Sbjct: 146 ENVHSEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP-------- 197

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                  +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 198 -----FCERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 252

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + + +K        K  + + R ++ EA  +E  +  + +P   +G+N     QY++++A
Sbjct: 253 LYSHLKK-------KPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVA 305

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +R   ++G   ++  +ENPF +M E+I L+ + NFFE RV EYQ+   +  
Sbjct: 306 DRLLVELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAGVMAD 354


>gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
 gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S
Sbjct: 56  SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 Q    
Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------SDKQATYG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 333 GFNKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis]
 gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S
Sbjct: 56  SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL++                 Q    
Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------GDKQATYG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 333 GFNKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis]
 gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 378

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W+    L
Sbjct: 52  KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWE---AL 108

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +P +  KA WAL++     +P               +  V
Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP-------------FCERIV 215

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 216 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 268

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + 
Sbjct: 269 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +FK +ENPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQKMGVMS 365


>gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Anolis carolinensis]
          Length = 394

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 71  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P +  KA+WA+++                      +  V + 
Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFA 234

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
 gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
          Length = 408

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 157/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKAKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +    F     +P I  KA+WA+++ Q            D D  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +   
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 286

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 287 ----HLNHRPEPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 343 LGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383


>gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis]
 gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L
Sbjct: 80  KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 137 KPEERYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +P +  KA W+L++     +P               +  V
Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP-------------YCERLV 243

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 244 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 296

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + 
Sbjct: 297 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKK 356

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +FK +ENPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 357 IFK-SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392


>gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium
           vinosum DSM 180]
          Length = 280

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 187/280 (66%), Positives = 233/280 (83%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D+NQL+P KY WAW+KYL AC NHWMP E+ M  DLALWK  +GLT+DERL++KRNLGF
Sbjct: 1   ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM
Sbjct: 61  FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           YREVP++  KA WAL +TQ L+ P F TGT + DQ+ L +L  FYV+FEG++FY GF QI
Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+   M+ EA
Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             LE  YAH+TMP+G +GLNA   E Y+ FIANRRC QIG
Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280


>gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1]
          Length = 399

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 162/334 (48%), Gaps = 27/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            +D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N LT DE
Sbjct: 64  EEDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDE 121

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I + 
Sbjct: 122 QYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY 181

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  +    FN    +P I  KA+WA+++ Q            D +  F Q L  F  V
Sbjct: 182 IKDPAQRTYLFNAVDTIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV 229

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G++   + I RDE LH +F   + + +K        +
Sbjct: 230 -EGIFFSGAFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLHSHLKG-------R 281

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q  + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G E ++K 
Sbjct: 282 ASKQMIQDIITDAVSIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYKS 341

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           T NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 342 T-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVL 373


>gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays]
 gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D   +  LF     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis]
          Length = 390

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +R   +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   
Sbjct: 63  AERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES--- 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 120 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 179

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E    FN    +P +  KA+WA+ +                 +    +  
Sbjct: 180 LIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWI-------------GDKKATYGERV 226

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 279

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HL  K  +++ R ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G  
Sbjct: 280 HLIHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN 339

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 340 KIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex]
          Length = 378

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R N  ++ +L +      L P++Y   W+ Y  A  + W   EV +  DL  W   + L 
Sbjct: 51  RDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLKDW---DNLQ 107

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER  +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I
Sbjct: 108 PNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGFQIAMENIHSEMYSLLI 167

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA WA+++           G KDA      +  V 
Sbjct: 168 ETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWI----------GNKDA---PYSERIVA 214

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL
Sbjct: 215 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACVMFK-------HL 267

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +++   +++ A  +E  +  + +P   +G+N     QY++F+A+R   ++G   L
Sbjct: 268 VNKPPKERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYIEFVADRLLLELGCTKL 327

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  +ENPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 328 YN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKAGVMN 363


>gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis]
          Length = 335

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 29/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E+ +    + +L +  D   + P+KY   WE Y  A  + W   EV +  D+  W+    
Sbjct: 6   EQSLEDSQEPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWE---R 62

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+DDER  +   L FFA+S+ +V  N+     + +  PE R +   Q   E +HS  +  
Sbjct: 63  LSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSL 122

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  E    F+    VP +  KA+WAL++                  +   +  
Sbjct: 123 LLEAYIKDPKEKDKLFHAIDTVPVVRKKAHWALKWING--------------SDLFSERL 168

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           + +   EG++F   F  I  L +   M G+    + I RDE LH +F   +         
Sbjct: 169 IAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYR------- 221

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H+  +  +++   ++ +A  +E  +  + +P   +G+N+    QY++F+A+R    +G  
Sbjct: 222 HIHNRLSEERVAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALGNP 281

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++  + NPF WM E+I L+ + NFFE RV +YQ+   + 
Sbjct: 282 KVYNVS-NPFDWM-ELISLQGKTNFFEKRVGDYQKAGVMN 319


>gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica]
 gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica]
          Length = 403

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R +  D+ +L        L P++Y   W+ Y  A  + W   E+ +  D+  W+  N L 
Sbjct: 71  RESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLN 128

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER  I   L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 129 NDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLI 188

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA+WAL++                ++    +  + 
Sbjct: 189 DTYIKDPKERTYLFNAIETIPCIKKKADWALKWI-------------SDEESTFGERLIA 235

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +       HL
Sbjct: 236 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HL 288

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +  ++    ++ EA  +E  +  + +P G +G+NA    QY++F+A+R    +G   +
Sbjct: 289 ENRPSKKIVEDVIVEAVGIEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKV 348

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  T NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 349 YNST-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 383


>gi|194690416|gb|ACF79292.1| unknown [Zea mays]
 gi|194704028|gb|ACF86098.1| unknown [Zea mays]
 gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|223943167|gb|ACN25667.1| unknown [Zea mays]
          Length = 339

 Score =  330 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D   +  LF     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays]
 gi|194692834|gb|ACF80501.1| unknown [Zea mays]
 gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER  
Sbjct: 15  EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDE--ALSPDERHF 72

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 73  ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F     VP++  KA+WA+++                  E   +  V +   EG
Sbjct: 133 DVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVEG 178

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + + ++       +K  +
Sbjct: 179 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLR-------SKLDE 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + RT++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T N
Sbjct: 232 ARVRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-N 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 291 PFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321


>gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Anolis carolinensis]
          Length = 391

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  DE+ 
Sbjct: 71  DEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKY 127

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   
Sbjct: 128 FISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 187

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P +  KA+WA+++                      +  V +   E
Sbjct: 188 DPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFAAVE 234

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 235 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPS 287

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  E
Sbjct: 288 EERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK-AE 346

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 347 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 378


>gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
 gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
          Length = 407

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 163/341 (47%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W  +
Sbjct: 61  APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNER 120

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 121 --LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   ++ +    FN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 179 SLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +     
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFS----- 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL  +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 281 --HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLLSLG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +  +K + NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 NDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 359

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 175/293 (59%), Positives = 231/293 (78%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y+
Sbjct: 307 QIKIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359


>gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L
Sbjct: 80  KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 137 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +P +  KA W+L++     +P               +  V
Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP-------------YCERLV 243

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 244 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 296

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + 
Sbjct: 297 VVHKPSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKK 356

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +FK +ENPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 357 IFK-SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392


>gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Anolis carolinensis]
          Length = 390

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 94/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 67  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P +  KA+WA+++                      +  V + 
Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFA 230

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
 gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
          Length = 324

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 153/334 (45%), Gaps = 30/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+    VP +  KA WAL++                D     +  V +   
Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWI---------------DNGSFAERLVAFAAV 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   +   +K        K 
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLK-------NKL 217

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T
Sbjct: 218 SQEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L+ + NFFE RV +YQ+   L 
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309


>gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
          Length = 418

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 27/347 (7%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
             L     GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  D
Sbjct: 75  AALQKRFVGEVELPESEEPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 134

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   N L D ER  I R L FFA+S+ +V  N++      +   E R +   Q   E
Sbjct: 135 LHDWN--NRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQIMME 192

Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS T+  +I +   D  E    F+    +P I  KA WAL++                
Sbjct: 193 NIHSETYSLLIDTYIKDPVERDFLFDAIETIPCIKRKAEWALRWI-------------SD 239

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           +     +  V +   EG++F   FA I  + +   M G+A   + I RDE +H +F   +
Sbjct: 240 EHSVFGERLVAFAAVEGIFFSGSFASIFWMKKRGLMPGLAFSNELISRDEGMHTDFACLL 299

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            +       HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+
Sbjct: 300 FS-------HLRRRPHPDTVERIIKEAVAIEQEFLTDALPVSLIGMNATLMCQYIEFVAD 352

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           R    +G + L+  T NPF +M  +I L+ + NFFE RV++Y +   
Sbjct: 353 RLLVALGNKKLYNST-NPFDFMD-MISLQGKTNFFEKRVSDYSKAGV 397


>gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia
           guttata]
          Length = 390

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R   +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 64  ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---L 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 121 KPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 180

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +P +  KA+WA+ +                 +    +  V
Sbjct: 181 IDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWI-------------GDKKATYGERVV 227

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 280

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  +++ + ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 281 LIHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK 340

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 341 IYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit;
           AltName: Full=p41
 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula
           solidissima]
          Length = 384

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
              T L        + +   + +L        +LP++Y   W+ Y  A  + W   EV +
Sbjct: 42  TQKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDL 101

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+A W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 102 SKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQI 158

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E    FN    +P +  KA+WA+++             
Sbjct: 159 AMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWIND---------- 208

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
              D     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 209 ---DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFA 265

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  K  Q++   ++ EA  +E  +  E +P   +G+N     QY++F
Sbjct: 266 CLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALPCRLIGMNCDLMRQYIEF 318

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R   ++  + L+   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 319 VADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVGEYQKMGVMS 368


>gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
 gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
          Length = 339

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDE--ALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DDAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +   ++       +K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------SKLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T 
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321


>gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
 gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 153/340 (45%), Gaps = 27/340 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 75  FVGEVDLPESEEPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 133

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N + D+ER  I   L FFA+S+ +V  N++      +   E R +   Q   E +HS T
Sbjct: 134 -NRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSET 192

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I S   D  +    F+    +P I  KA WAL++     S                
Sbjct: 193 YSLLIDSYIKDPAQREYLFDAIETIPCIKRKAEWALKWISDQES-------------TFA 239

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  + +   M G+    + I RDE +H +F   + + +K 
Sbjct: 240 ERLVAFAAVEGIFFSGSFASIFWMKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLKR 299

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +   +  + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 300 -------RPHPEVVKHIIVEAVKIEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSL 352

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           G E  +  T NPF +M  +I L+ + NFFE RV++Y +  
Sbjct: 353 GNEKHYNKT-NPFDFMD-MISLQGKTNFFEKRVSDYSKAG 390


>gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 380

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D + +L        L P+KY   W  Y  A  + W   E+ +  D+  W   N L  DE+
Sbjct: 46  DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDW--DNKLNADEK 103

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N++      +   E R +   Q   E +HS  +  +I +  
Sbjct: 104 HFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYV 163

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            +  E    F+    +P I  KA+WAL +                 +    +  + +   
Sbjct: 164 REPTERAHLFDAIDTIPCIRKKADWALTWI-------------SDKKSTFGERLIAFAAV 210

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  + 
Sbjct: 211 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT-------HLERRP 263

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T
Sbjct: 264 HPDTVQAIIAQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT 323

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L  + NFFE RV++Y +   + 
Sbjct: 324 -NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 355


>gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
 gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
          Length = 339

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio]
 gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Danio rerio]
 gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase protein R2 class
           I; AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio]
 gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio]
          Length = 386

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           Q+  K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 56  QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW-- 113

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 114 -DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL +                      
Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWI-------------GDKNARYG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLINKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G + ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 333 GFDKVY-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373


>gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
          Length = 386

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           Q+  K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 56  QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW-- 113

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  
Sbjct: 114 -DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    FN    +P +  KA+WAL +                      
Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWI-------------GDKNARYG 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL +K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++
Sbjct: 276 ---HLISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G + ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 333 GFDKVY-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373


>gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           [Strongylocentrotus purpuratus]
          Length = 412

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 30/354 (8%)

Query: 2   ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           A +  + P  +G+K V  N +D+ +L   +    + P++Y   W+ Y  A  + W   EV
Sbjct: 66  AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEV 125

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  W +   L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   
Sbjct: 126 DLSKDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182

Query: 120 QAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D      LFN    +P +T KA WAL +  +        
Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGS-------- 234

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                D        V +   EG++F   FA I  L +   M G+    + I RDE LH +
Sbjct: 235 -----DSADFGTRIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 289

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +         HL  K  ++  + ++ EA  +E  +  + +P   +G+NA   ++Y+
Sbjct: 290 FACLMFK-------HLNNKPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKRYI 342

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +F+A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 343 EFVADRLLVELGCGKIWKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 394


>gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 392

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 37/361 (10%)

Query: 2   ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
           A +  + P+ AG + +         N +++ +         L P++Y   W KY    + 
Sbjct: 43  AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E     +  + +P I  KA WA+++    
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 216

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 217 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 266 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+   +
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377

Query: 350 K 350
            
Sbjct: 378 S 378


>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
 gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
          Length = 422

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W   N +T
Sbjct: 91  KEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMT 148

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 149 ENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 208

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA WA+++ Q            D D  F + L  F
Sbjct: 209 DTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQ------------DKDALFAERLVAF 256

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL
Sbjct: 257 AAV-EGIFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHL 308

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K   +    ++ EA  +E  Y  + +P   +G+N+    QY++F+A+R    +G +  
Sbjct: 309 NNKPDTEIVEKIITEAVEIEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKY 368

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  + NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 369 YNVS-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 403


>gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo]
          Length = 399

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 28/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L        + P++Y   W+ Y  A  + W   EV +  D++ W+    L  +E+
Sbjct: 75  EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWE---KLKSEEK 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             +   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +  
Sbjct: 132 HFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYV 191

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    FN    +P +  KA+WAL++                +Q    +  V +   
Sbjct: 192 KDPTERDFLFNAIETMPCVKEKADWALRWIND-------------EQSSFGERVVAFAAV 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  K 
Sbjct: 239 EGIFFSGSFASIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFS-------HLKNKP 291

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E ++  E +P   +G+N     QY++F+A+R   ++G   ++   
Sbjct: 292 SQERVYDIIRDAVRIEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGCPKIWNV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M   I L+ + NFFE RV EYQ+   + 
Sbjct: 351 ENPFDFMDN-ISLEGKTNFFEKRVGEYQKMGVMS 383


>gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
 gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
          Length = 408

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P      +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 60  AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q 
Sbjct: 117 SKDIHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   ++ +    F     +P I  KA+WA+++ Q           
Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 224 -DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 282 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383


>gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
 gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
          Length = 330

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 226/327 (69%), Gaps = 2/327 (0%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
             +  D N++LP+ Y WA E Y +   N+W P EVPM DD+  W++ + L+ +ER +++ 
Sbjct: 6   TESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEN-DELSSEERQLVEW 64

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
           NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   
Sbjct: 65  NLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEY 124

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           L+ MY  +P+I AK  + +  TQ +  P F   + +  +EFL+DL  FYV+ EG++FY G
Sbjct: 125 LYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIFFYAG 184

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA +L L R  KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN  +WT  F+ +   +
Sbjct: 185 FAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAEIEGL 244

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           L EA  LE  YA E  P+  +G+      +Y++++A+RR  Q+G+EP++  T+NPFPWM+
Sbjct: 245 LREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPFPWMA 303

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351
           E +DL KEKNFFET V EYQ G  L+W
Sbjct: 304 EQVDLNKEKNFFETNVAEYQSGGSLEW 330


>gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 392

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P+    +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 51  VAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 111 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 167

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 216

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 217 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 273

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 274 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 327

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 328 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378


>gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 331

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
             + +L    +   + P+KY   WE Y  A  + W   EV +  D   W++   LTDDER
Sbjct: 6   QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDER 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 63  HFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 122

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D+ E    FN    +P +  KA+WAL++  +  S                +  + +   
Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWIDSAGS--------------FAERILAFACV 168

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +          L  K 
Sbjct: 169 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LINKL 221

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++   ++ EA  +E  +  E +    VG+N     +Y+ F+A+R    +G    +   
Sbjct: 222 SEERVYEIVCEAVEIEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRKKYNAL 281

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 282 -NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313


>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
          Length = 408

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 28/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        +LP+++   W  Y  A  + W   EV +  DL  W+   GL D E+  
Sbjct: 86  EPLLRENPSRFVILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHF 142

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 143 IKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYIND 202

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P++  KA WA+++              D  +    +  V +   EG
Sbjct: 203 PQEKHMLFNAVETLPAVKRKAEWAMRWI-------------DHKRASFAERVVAFAAVEG 249

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+ +  + I RDE LH +F   + + +  + P       +
Sbjct: 250 IFFSGSFAAIFWLKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-------K 302

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E +P   +G+N+    +Y++F+++R    +G + ++  T N
Sbjct: 303 ERVIGIIMDAVEIEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKVYNAT-N 361

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PFP+M E I ++ + NFFE RV+EYQ+   +
Sbjct: 362 PFPFM-ENISIEGKTNFFERRVSEYQKSGVM 391


>gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 329

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 159/347 (45%), Gaps = 37/347 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +SP+   E  ++ +D+R          + P++Y   WE Y  A  + W   EV + DD+ 
Sbjct: 1   MSPLPLAEPLLDENDQR--------FTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMK 52

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W++   LT DE+  +   L FFA+S+ +V  N+ +     +  PE R +   Q   E +
Sbjct: 53  HWET---LTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENI 109

Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I     D  E    F     +P +  KA+WAL++  +               
Sbjct: 110 HSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKADWALKWIDS--------------S 155

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +   +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 156 DSFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFS 215

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                   L  K  ++  R ++ EA  +E  +  +++P   VG+NA     Y++++A+  
Sbjct: 216 M-------LNNKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHL 268

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              +GL   +  T NPF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 269 FCSLGLAKEYN-TTNPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 313


>gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster]
 gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct]
 gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct]
          Length = 393

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380


>gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis]
          Length = 388

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +   + +L        L P+++   W  Y  A  + W   EV +  D+A W   N 
Sbjct: 59  TPAFDPQLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NR 115

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 116 LNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSL 175

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +    FN    +P +  KANWAL +                D     +  
Sbjct: 176 LIDTYISDASQRQFLFNAIETLPCVAKKANWALNWI-------------SHDSATFAERV 222

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 223 IAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 275

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H+  K  +++  +++ +A  +E  +  + +P   +G+N     QY++F+A+R   ++G  
Sbjct: 276 HIVQKPSEERVISIIKDAVTIEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCP 335

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++  +ENPF +M E I L+ + NFFE +V EYQ+   ++ 
Sbjct: 336 KVYN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKWGVMQD 374


>gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/
           ribonucleoside-diphosphate reductase/ transition metal
           ion binding [Arabidopsis thaliana]
 gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C;
           AltName: Full=Ribonucleoside-diphosphate reductase TSO2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit C
 gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
           thaliana]
          Length = 332

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D 
Sbjct: 3   SMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDG 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +
Sbjct: 61  ERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDT 120

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    F     +P +  KA WA+++                  +   +  + + 
Sbjct: 121 YIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH +F   +   +K +      
Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSE--- 223

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               ++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++ 
Sbjct: 224 ----ERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYG 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            T NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 280 VT-NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 313


>gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 463

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +     +    ++ +L    D   + P+KY   W+ Y  A  + W   EV +  DL  W 
Sbjct: 131 LTQATTKDLEAEETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDW- 189

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L ++ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 190 --VKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSE 247

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   ++ E    F+    +P +  KA+WA+++ Q+             ++   
Sbjct: 248 MYSLLIDAYIKEQEEKTRLFHAIDNMPCVKKKADWAIEWIQS-------------EESSF 294

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I    +   + G+    + I RDE LH +F   + +   
Sbjct: 295 GERLVAFAAVEGIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFS--- 351

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  K  +++ R ++ +A  +E  + +E +P G +G+N      Y++F+A+R   +
Sbjct: 352 ----HLTYKPSKERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLE 407

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  + ++ + ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 408 LNCDKVY-HRENPFDFM-ENISLEGKTNFFEKRVGEYQKANVMS 449


>gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
           Subunit R2
          Length = 332

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 10  VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 66

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 67  RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 126

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    FN    +P +  KA+WAL++                 +    +  V +  
Sbjct: 127 IKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFAA 173

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K
Sbjct: 174 VEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHK 226

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F  
Sbjct: 227 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF-R 285

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 286 VENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 319


>gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
 gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
          Length = 391

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++AG+   +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W+
Sbjct: 60  LKAGQAPFDPSIEPLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWE 119

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 120 ---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 176

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  E    FN    +P +  KA+WA+ +               +     
Sbjct: 177 MYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWI-------------SSKHANF 223

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +     
Sbjct: 224 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFRY-- 281

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                L  K  +++   ++ EA ++E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 282 -----LVQKPSKERVLEIIREAVVIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLE 336

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G E ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 337 LGNEKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 377


>gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans
           CBS 112818]
          Length = 408

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P      +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 60  AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q 
Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   ++ +    F     +P I  KA+WA+++ Q           
Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 224 -DKNSTFSQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 282 CLLFS-------HLNYRPDPNAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383


>gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
           1 [Apis mellifera]
          Length = 384

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 28/354 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N   +  +   E + N + + +L        + P+++   W+ Y  A  + W   EV 
Sbjct: 44  VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W   N LT  E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E    FN    +P +  KA+WAL +            
Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWINH--------- 211

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               +     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 212 ----ESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +         H+  K   ++  +++ +A  +E  +  + +P   +G+N     QY++
Sbjct: 268 ACLMFK-------HIVQKPSCERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIE 320

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F+A+R   ++G + ++  +ENPF +M E I L+ + NFFE +V EYQ+   ++ 
Sbjct: 321 FVADRLLVELGCKKIY-MSENPFDFM-EHISLEGKTNFFEKKVGEYQKWGVMQD 372


>gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Oryctolagus cuniculus]
          Length = 339

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              N D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N L
Sbjct: 13  PDTNEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRL 69

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  +
Sbjct: 70  TSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLL 129

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  +    FN    +P +  KA+WAL++                 +    +  V
Sbjct: 130 IDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFGERVV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +          
Sbjct: 177 AFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY------- 229

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G   
Sbjct: 230 LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFSK 289

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 VFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 325


>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
 gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
          Length = 347

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 30/346 (8%)

Query: 8   SPIQAGEKRVNV-DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     R+    ++ +L        + P++Y   WE Y  A  + W   EV +  D  
Sbjct: 9   SPIVDDGSRIKAPKEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+S   LTD+E+  +   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +
Sbjct: 69  HWES---LTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENI 125

Query: 127 HSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  ++ +   D   + +LFN    +P +  KA+WAL++  +               
Sbjct: 126 HSEMYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWIDS--------------S 171

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +   +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 172 QSFAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 231

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            + +       K  +++ + ++ +A  +E  +  E +    VG+NA    QY+ F+A+R 
Sbjct: 232 LLNV-------KLDEKRVKEIVSDAVEIERQFVCEALSCDLVGMNARLMSQYIDFVADRL 284

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              +G   LF    NPF WM  +I L+ + NFFE RV EYQ+ + +
Sbjct: 285 MVVLGYNKLFNAI-NPFDWMD-LISLQGKTNFFEKRVGEYQKASVM 328


>gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 325

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 29/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++ + +L        + P+KY   WE Y  A  + W   EV +  DL  W+    LTD+E
Sbjct: 1   MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWE---ALTDNE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ + 
Sbjct: 58  RHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D+ E    FN    +P +T KA WAL++  +  S                +  + +  
Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWIDSSGS--------------FAERILAFAC 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   +          L  K
Sbjct: 164 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LNNK 216

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + +   ++ EA  +E  +  E +    VG+N     +Y+ F+A+R    +G    +  
Sbjct: 217 LSEDRVHEIVCEAVDIEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYNA 276

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 277 R-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 309


>gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
 gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
          Length = 408

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P      +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 60  AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q 
Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   ++ +    F     +P I  KA+WA+++ Q           
Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 224 -DKNSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + +       HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 282 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383


>gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba]
 gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba]
          Length = 393

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380


>gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia]
 gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans]
 gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia]
 gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans]
          Length = 393

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVS 380


>gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa]
          Length = 355

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 28/328 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  +
Sbjct: 49  SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P +  KA+WAL++                 +    +  V + 
Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFA 212

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 213 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 265

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F 
Sbjct: 266 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVF- 324

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTE 342
             ENPF +M E I L+ + NFFE RV E
Sbjct: 325 RVENPFDFM-ENISLEGKTNFFEKRVGE 351


>gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus]
 gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
 gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  DL  W  
Sbjct: 21  ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  + + R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus
           cuniculus]
          Length = 400

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 156/354 (44%), Gaps = 30/354 (8%)

Query: 2   ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           A  T ++ ++     +   + D+           +L ++    W +      + W   EV
Sbjct: 59  APGTQMAAVRQKSPALASGMGDESGRRENPCRFSILTIESYGIWTRNKKGEASFWTAEEV 118

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  W+    L ++ER  I   L FFA+S+ +V  N+V    + +   E R +   
Sbjct: 119 DLSKDIQHWE---ALKEEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 175

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D  E    FN    +P +  KA+WAL++           
Sbjct: 176 QIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI---------- 225

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +
Sbjct: 226 ---GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 282

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +         HL  K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY+
Sbjct: 283 FACLMFK-------HLVHKPSEQRVQEIIVNAVRIEQEFLTEALPVKLIGMNCALMKQYI 335

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 336 EFVADRLLLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 387


>gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 329

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D ER 
Sbjct: 3   EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 61  FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     +P +  KA WA+++                  +   +  + +   E
Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 166

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +   +K +         
Sbjct: 167 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSE------ 220

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            ++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  T 
Sbjct: 221 -ERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 278

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 279 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 310


>gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis]
 gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 28/354 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M ++         + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV 
Sbjct: 44  MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVD 103

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +     L D ER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q
Sbjct: 104 LSKDSHDFA---KLNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I SL  D+ E    FN    +P +  KA+WAL +            
Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN---------- 210

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                +    +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 211 ---PQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +          L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++
Sbjct: 268 ACLMYKY-------LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIE 320

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F+A+R    +  + ++   ENPF +M E I L+ + NFFE RV EYQ+   +  
Sbjct: 321 FVADRLLVALNCQKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMSD 372


>gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis]
 gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis]
          Length = 341

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +  
Sbjct: 11  SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFA- 69

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  
Sbjct: 70  --KLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEM 127

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I SL  D+ E    FN    +P +  KA+WAL +                 +    
Sbjct: 128 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 174

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 175 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKY--- 231

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +
Sbjct: 232 ----LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 287

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 288 NCQKVYNV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMS 328


>gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 388

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 47  VAPGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 107 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 163

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 212

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 213 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 269

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 270 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 323

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 324 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374


>gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
 gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii]
          Length = 426

 Score =  325 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 151/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   +    L P+KY   W+ Y  A  + W   E+ +  D   W     L ++ER 
Sbjct: 101 EEPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNE--KLNNNERY 158

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 159 FISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIK 218

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WAL++                D     +  V +   E
Sbjct: 219 DPKEADFLFNAIDNIPCIKKKADWALRWIND-------------DDALFGERLVAFAAVE 265

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 266 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPD 318

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G + ++  T 
Sbjct: 319 AVIVERIITEAVTIEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT- 377

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 378 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 408


>gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris
           CBS 7435]
          Length = 400

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 153/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L PLKY   W+ Y  A  + W   E+ +  DL  W   N + D+E+ 
Sbjct: 75  DEPLLVENKRRFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WA+++                D     +  V +   E
Sbjct: 193 DPKESEFLFNAIETIPCIKEKADWAMRWI-------------SDDDALFAERLVAFAAVE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 240 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNRAS 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++    
Sbjct: 293 EEIVEKIITEAVEIEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYNVN- 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382


>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
 gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
          Length = 324

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 30/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+    VP +  KA WAL++                D     +  V +   
Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWI---------------DNGNFAERLVAFAAV 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   + + +K        K 
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLK-------NKL 217

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++    ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T
Sbjct: 218 SEEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIYHAT 277

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L+ + NFFE RV +YQ+   L 
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309


>gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST]
 gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 28/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L   ER  
Sbjct: 81  EPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET---LKPSERHF 137

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +   D
Sbjct: 138 ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRD 197

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WAL +               + +    +  V +   EG
Sbjct: 198 SKEREFLFNAIETLPCVKRKADWALNWI-------------SSKKANFGERVVAFAAVEG 244

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +          L  K  +
Sbjct: 245 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKY-------LVQKPSK 297

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A L+E  +  + +P   +G+N     QY++F+A+R   ++G E ++ +T+N
Sbjct: 298 ERVTEIIRDAVLIEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGCEKIY-HTKN 356

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 357 PFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 386


>gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens]
          Length = 351

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 324

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 157/336 (46%), Gaps = 29/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +++ ++ +L    +   L P+K+   W  Y     + W   E+ +  DL  W +   L D
Sbjct: 1   MSLLEEPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE + +   Q   E +HS T+  +I 
Sbjct: 58  GERHFISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    VP +  KA+WAL++                D     +  + +
Sbjct: 118 TYIKDPKEKDRLFNAIDTVPCVKKKADWALRFI---------------DNGSFIENIIAF 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  +  L +   M G++   + I RDE LH +F   +  +       + 
Sbjct: 163 AAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKY------IN 216

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K   ++   ++ EA  +E  +  +++P   +G+NA   +QY++F+A+R    +G+   F
Sbjct: 217 NKLPAERVIQIILEAVEIEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQF 276

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPF +M E+I L+ + NFFE RV+EYQ+   +
Sbjct: 277 NAT-NPFDFM-EMISLQGKTNFFEKRVSEYQKSGVM 310


>gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
 gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
          Length = 397

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 27/345 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +  +++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 60  FVGEVDLPEEEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDW-- 117

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N +TD ER  +   L FFA+S+ +V  N+V      +   E R +   Q   E +HS T
Sbjct: 118 DNRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYGFQIMMENIHSET 177

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +       FN    VP +  KA+WAL++                 +    
Sbjct: 178 YSLLIDTYIREPERRDFLFNAIETVPVVKQKADWALRWI-------------SDHRASFS 224

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G++   + I RDE LH +F   + + +K 
Sbjct: 225 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFSHLKK 284

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 285 -------RAHPDTVNRIITEAVDIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVAL 337

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           G    +  T NPF +M E I L+ + NFFE RV +Y +    + D
Sbjct: 338 GNPKHYNST-NPFDFM-ENISLQGKSNFFERRVGDYAKAGVARAD 380


>gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
           sapiens]
 gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 2 [Pan troglodytes]
 gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens]
 gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens]
 gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo
           sapiens]
 gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens]
 gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo
           sapiens]
 gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct]
 gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic
           construct]
          Length = 351

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 330

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L    +   + P+KY   WE Y  A  + W   EV +  D   W+    LTD+ER
Sbjct: 5   QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWE---ALTDNER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 62  HFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 121

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    FN    +P +T KA WAL++  +  S                +  + +   
Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWIHSAGS--------------FAERILAFACV 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +          L  K 
Sbjct: 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LNNKL 220

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +   ++ EA ++E  +  E +    VG+N     +Y+ F+A+R    +G    +  +
Sbjct: 221 SEDRVYEIVCEAVVIEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-S 279

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 280 HNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 422

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        + P++Y   W+ Y  A  + W   E+ +  D+  WK  N L ++ER 
Sbjct: 98  DEPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWK--NKLNENERF 155

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 156 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIK 215

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WA+++                D     +  V +   E
Sbjct: 216 DPKEADFLFNAIDNIPQIKKKADWAIRWIND-------------DNALFAERLVAFAAVE 262

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  +  
Sbjct: 263 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLENRPD 315

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G E ++K T 
Sbjct: 316 PKIVEKIISEAVEIEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT- 374

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 375 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 405


>gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis]
          Length = 351

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              +  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           sp. NRC-1]
 gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           salinarum R1]
 gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1]
 gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium
           salinarum R1]
          Length = 331

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +A  D N++LP+ Y WA E Y     N+W P EV MQ D++ W+  N LTD ER +++ N
Sbjct: 7   DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQ-GNELTDAERQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y   SLG D   +
Sbjct: 66  LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  +PSI  K  + +  T+ +   +FT  T D  ++FL+DL  FYV+ EG++FY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L+L R  KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ +  +++
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  LE  YA +  P   +G+++     Y++++A+RR  Q+ ++P++  T+NPFPWM+E
Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
            +DL  E NFFE  V+EYQQG  L WD
Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331


>gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
 gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
          Length = 323

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 30/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N++++ +L    D   LLP+ Y   WEKY     + W   E+ +  D+  W   N L D
Sbjct: 1   MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I 
Sbjct: 58  GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    F+    VP++T KA WAL++ +  +                 +  V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIENGN---------------FAERLVAF 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F   +   ++   P   
Sbjct: 163 AAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLPE-- 220

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                ++  T++ +A  +E  +  + +P   +G+N+    +Y++F+A+R   ++G   +F
Sbjct: 221 -----EQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E+I L+ + NFFE RV +YQ+   + 
Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMS 310


>gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L        + P+KY   WE Y     + W   E+ +  DL  W++   L+D++R 
Sbjct: 14  KEDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRH 70

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 71  FISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIK 130

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     VPS+  KA WAL +                D     +  + +   E
Sbjct: 131 DPAEKDKIFRAIETVPSVRKKAEWALSWIN--------------DDNCFSERLIAFACVE 176

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I  L +   M G+    + I RDE LH +F   + N +       +T+  
Sbjct: 177 GILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMMH------YTRLP 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            ++   ++  A  +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T 
Sbjct: 231 DERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 290 NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320


>gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia angusta DL-1]
          Length = 408

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L D+ER 
Sbjct: 81  DEPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERY 138

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 139 FVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVK 198

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WA+++                ++    +  V +   E
Sbjct: 199 DPKEAEFLFNAIETIPCIKEKAEWAMRWIND-------------EEALFAERLVAFAAVE 245

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL     
Sbjct: 246 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNTPN 298

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G +  +  T 
Sbjct: 299 NDIVLKIITEAVDIEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT- 357

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 358 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 388


>gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Anolis carolinensis]
          Length = 414

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  +  +++ +L        + P+ Y   W+ Y  A  + W   EV +  D   W   N 
Sbjct: 87  ENGLKSNEEPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NK 143

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 144 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 203

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E    FN    +P +  KA+WAL++ +               +    +  
Sbjct: 204 LIDTYIKDPEERDFLFNAIETMPCVKKKADWALRWIRD-------------RKATFGERV 250

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         
Sbjct: 251 VAFASVEGIFFSGAFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY------ 304

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 305 -LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFS 363

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 364 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 400


>gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
 gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
          Length = 387

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W+ Y  A  + W   EV +  D   W   + L D+ER 
Sbjct: 67  EEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHW---DSLKDEERY 123

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   
Sbjct: 124 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 183

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P +  KA+WAL +                      +  V +   E
Sbjct: 184 DPKERDYLFNAIETLPCVKRKADWALNWIGN-------------KNAGFGERVVAFAAVE 230

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 231 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPS 283

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++  A  +E  +  + +P   +G+N     QY++F+A+R   ++G + ++   E
Sbjct: 284 KETVTKLIRNAVEIEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIY-RVE 342

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 343 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 374


>gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii]
 gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii]
          Length = 351

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
 gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
          Length = 330

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 160/326 (49%), Positives = 224/326 (68%), Gaps = 2/326 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +   D N++LP+ Y WA + Y     N+W+P E+PMQ+D+A W + + L+D E+ +++ N
Sbjct: 7   DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQW-NGDALSDSEKQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   +
Sbjct: 66  LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  VPSI  K  + +  T+ L  P FT       ++ L+DL  FYVV EG++FY GF
Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP  WT EF  + R ++
Sbjct: 186 AMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEVRDLI 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  LE  YA E  P   +G++     +Y++ +A+RR  Q+ L+  +  T+NPFPWMSE
Sbjct: 246 EKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFPWMSE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351
            +DL KEKNFFET+VTEYQ G  L W
Sbjct: 305 AVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 388

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 47  VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 107 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 163

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 212

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 213 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 269

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 270 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 323

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 324 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 374


>gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis]
 gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis]
          Length = 394

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    + +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 63  MEKIAAQFDPTVEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 122

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 123 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 179

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 180 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWI-------------SSKAANF 226

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 227 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 283

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  + +P   +G+N     +Y++F+A+R   +
Sbjct: 284 ----HLVQRPCRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 339

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  L+  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 340 LGVGKLYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 381


>gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
 gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti]
 gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti]
 gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
          Length = 397

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A N   +  +  +   +   + +L        + P++Y   W+ Y  A  + W   EV 
Sbjct: 57  LAKNELSAAQKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 116

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DLA W+    L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 117 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 173

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E    FN    +P +  KA+WAL +            
Sbjct: 174 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWI----------- 222

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
              + +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 223 --SSKKANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +          L  K  Q++   ++ EA L+E  +  + +P   +G+N     QY++
Sbjct: 281 ACLMFKY-------LVQKPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCDLMSQYIE 333

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R   ++G++ ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 334 FVADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 383


>gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 392

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 158/361 (43%), Gaps = 37/361 (10%)

Query: 2   ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
           A +  + PI    + +         N +++ +         L P++Y   W KY    + 
Sbjct: 43  AEDLVIKPIATDAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 103 IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E     +  + +P I  KA WA+++    
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 216

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 217 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 266 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               QY++F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   +
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377

Query: 350 K 350
            
Sbjct: 378 S 378


>gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus
           norvegicus]
 gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus
           norvegicus]
          Length = 351

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++   ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni]
 gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni]
          Length = 395

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 28/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +       +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 64  MDKKVAHFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 123

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 124 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 180

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  E    FN    +P++  KA+WAL +               +     
Sbjct: 181 MYSILIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWI-------------SSKAANF 227

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 228 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQ--- 284

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +    +P   +G+N     QY++F+A+R   +
Sbjct: 285 ----HLVQRPSRERIIEIIRDAVQIEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVE 340

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   +
Sbjct: 341 LGVGKIYN-TKNPFSFM-EMISLDGKTNFFEKKVGEYQRMGVV 381


>gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 361

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +  +   ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 34  DNGLKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  
Sbjct: 91  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSL 150

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +    FN    +P +  KA+WALQ+                 +    +  
Sbjct: 151 LIDTYIKDPQKREFLFNAIETMPCVKRKADWALQWIAD-------------RKSTFGERV 197

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +       
Sbjct: 198 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY------ 251

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L  K  +++ + ++  A  +E  +  + +P G +G+N+   +QY++F+A+R   ++G  
Sbjct: 252 -LVNKPSEERVKEIIINAVEIEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFS 310

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F+ ++NPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 311 KVFQ-SDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 347


>gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 388

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 37/361 (10%)

Query: 2   ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
             N  + P+ AG + +         N +++ +         L P++Y   W KY    + 
Sbjct: 39  TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 99  IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E     +  + +P I  KA WA+++    
Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 212

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 213 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 261

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 262 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+   +
Sbjct: 316 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 373

Query: 350 K 350
            
Sbjct: 374 S 374


>gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 2 [Canis familiaris]
          Length = 351

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 337


>gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative;
           ribonucleotide reductase r2 subunit 1, putative;
           ribonucleotide reductase small subunit 1, putative
           [Candida dubliniensis CD36]
 gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative
           [Candida dubliniensis CD36]
          Length = 413

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W  Y  A  + W   E+ +  DL  W   N L ++ER 
Sbjct: 89  EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N++      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WA+++ Q              D+    +  V +   E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVE 253

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  +  
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPS 306

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T 
Sbjct: 307 PEIVEKIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396


>gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 392

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 51  VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 111 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 167

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 216

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 217 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 273

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 274 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 327

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 328 FVADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQGKTNFFERKVGEYQKAGVMS 378


>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
          Length = 401

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 99/332 (29%), Positives = 152/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   WE Y  A  + W   E+ +  DL  W   N + ++ER 
Sbjct: 75  DEPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WA+++ Q              D     +  V +   E
Sbjct: 193 DPKESEFLFNAIETIPQIKEKAEWAIRWIQD-------------DDALFGERLVAFAAVE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPN 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G +  F  T 
Sbjct: 293 PEIVEKIITEAVEIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT- 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVI 382


>gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus
           utahensis DSM 12940]
 gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM
           12940]
          Length = 330

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 164/325 (50%), Positives = 227/325 (69%), Gaps = 2/325 (0%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD+A W + + LTD ER +++ NL
Sbjct: 8   AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQW-NGDELTDAERQLVEWNL 66

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
           GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG +   L+
Sbjct: 67  GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            MY  VPSI  K  + +  T+++  P FT       ++ L+DL  FYV+ EG++FY GFA
Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIFFYAGFA 186

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF  +   ++ 
Sbjct: 187 MMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSEVIDLIK 246

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  LE  YA E  P+  +G++      Y+++IA+RR  Q+ L   +  TENPFPWMSE 
Sbjct: 247 EAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPFPWMSEQ 305

Query: 327 IDLKKEKNFFETRVTEYQQGAELKW 351
           +DL KEKNFFET+VTEYQ G  L+W
Sbjct: 306 VDLNKEKNFFETQVTEYQSGGSLEW 330


>gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
 gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
          Length = 343

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 157/340 (46%), Gaps = 30/340 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R++ +++ +L    D   +LP+ Y   WE Y     + W   E+ + DD+  W   N L 
Sbjct: 19  RMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMKDW---NNLN 75

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I
Sbjct: 76  DGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLI 135

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    F+    VP +  K  WAL++ +                    +  V 
Sbjct: 136 DTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIEN---------------GTFAERLVA 180

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   F  I  L +   M G+    + I RDE +H  F   + +        L
Sbjct: 181 FAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEFACLLYSM-------L 233

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  ++   T++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G + L
Sbjct: 234 SNKLSKEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIEFVADRWLQELGYDKL 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +  T NPF +M E+I L+ + NFFE RV +YQ+   L  D
Sbjct: 294 YHAT-NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331


>gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus
           caballus]
          Length = 351

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E     +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N LT DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WALQ+                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 413

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 153/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W  Y  A  + W   E+ +  DL  W   N L ++ER 
Sbjct: 89  EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N++      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 147 FISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA+WA+++ Q              D+    +  V +   E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVE 253

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  +  
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPS 306

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T 
Sbjct: 307 PEIVERIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396


>gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum]
 gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum]
          Length = 374

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 27/334 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           + + + +L        + P++Y   W+KY  A  + W   EV +  DL  WK  N L  D
Sbjct: 51  DPELEPLLQENPRRFVVFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWK--NKLNSD 108

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 109 ERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLIET 168

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              +  E    FN    +P +  KA+WAL +  +                   +  V + 
Sbjct: 169 YISEPQEKEFLFNAIETLPCVKKKADWALLWINS-------------KNATFGERIVAFA 215

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L + N M G+    + I RDE LH +F   + +       HL  
Sbjct: 216 AVEGIFFSGSFASIFWLKKRNLMPGLTFSNELISRDEGLHCDFACLMFS-------HLVQ 268

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ ++++ +A  +E  +  E +P   +G+N     QY++F+A+R   ++G E ++ 
Sbjct: 269 KPSKERIQSIIQDAVKIEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKIYN 328

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            ++NPF +M+ +I  + + NFFE +V EYQ+   
Sbjct: 329 -SQNPFDFMT-IISNEGKTNFFEKKVGEYQKSGV 360


>gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus]
 gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus]
          Length = 333

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  NEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    +P +  KA+WA ++                D     +  V +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSASYGERLVAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL 
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 354

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 13  VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 73  LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 129

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 130 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 178

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 179 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 235

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 236 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 289

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 290 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 340


>gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis]
 gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M ++         + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV 
Sbjct: 44  MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVD 103

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +     L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q
Sbjct: 104 LSKDSHDFA---KLNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I SL  D+ E    FN    +P +  KA+WAL +            
Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN---------- 210

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                +    +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 211 ---PQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +          L  K  ++  R ++ +A ++E  +    +P   +G+N     QY++
Sbjct: 268 ACLMYKY-------LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIE 320

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +  + ++   ENPF +M E I L+ + NF+E RV EYQ+   + 
Sbjct: 321 FVADRLLVALNCQKVYNV-ENPFDFM-ENISLEGKTNFYEKRVGEYQKSGVMS 371


>gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGLSADARHWDE--ALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     VP++  KA+WA+++                  E   +  V +   E
Sbjct: 132 DHVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERIVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +   ++        K  
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------NKLD 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T 
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L  + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLMGKTNFFEKRVGDYQKASVMN 321


>gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 28/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   WE Y     + W   E+ +  DL  W++   L+D++R  
Sbjct: 15  EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHF 71

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D
Sbjct: 72  ISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKD 131

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ++F     VPS+  KA WAL +                D     +  + +   EG
Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWIN--------------DDNCFAERLIAFACVEG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L +   M G+    + I RDE LH +F   + N +K      +T+   
Sbjct: 178 ILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMLK------YTRLPD 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++  A  +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T N
Sbjct: 232 ERVHEIVRGAVEVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-N 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 291 PFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320


>gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
          Length = 339

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 29/342 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            G  +   + + +L  +S    + P++Y   WE Y  A  + W   EV +  D+  W++ 
Sbjct: 7   NGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET- 65

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L+  E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +
Sbjct: 66  --LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMY 123

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             ++ +   D  E    FN    +P +  KA WAL +  +                   +
Sbjct: 124 SLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHS--------------STSFAE 169

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++  
Sbjct: 170 RLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK- 228

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                      +   ++HEA  +E  +  + +P   +G+N+    QY++F+A+R    +G
Sbjct: 229 ------PLISDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALG 282

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 283 YQRKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 322


>gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Ciona
           intestinalis]
          Length = 393

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  +ER
Sbjct: 72  NEEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWE---ALKPNER 128

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +  
Sbjct: 129 KFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYI 188

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    FN    +P +  KA WAL++                 +    +  + +   
Sbjct: 189 RDTHEREFLFNAIETLPCVRKKAEWALKWI-------------SDSESTYAERIIAFASV 235

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K 
Sbjct: 236 EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKP 288

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +   ++ +A  +E  +  + +P   +G+N    +QY++F+A+R   ++G   +FK  
Sbjct: 289 SEARVVEIVKDAVTIEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFKV- 347

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ENPF +M E+I L+ + NFFE RV EYQ+   +
Sbjct: 348 ENPFDFM-ELISLEGKTNFFEKRVGEYQKAGVM 379


>gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos
           taurus]
 gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus]
          Length = 351

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis]
 gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis]
          Length = 393

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 154/340 (45%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W     
Sbjct: 66  AAPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA---R 122

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  
Sbjct: 123 LTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSV 182

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E    FN    +P++  KA+WAL +               +      +  
Sbjct: 183 LIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWI-------------SSKAANFGERI 229

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +         
Sbjct: 230 IAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFR------- 282

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HL  +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   ++G+ 
Sbjct: 283 HLVQRPSRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVG 342

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 343 KIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380


>gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 388

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 158/361 (43%), Gaps = 37/361 (10%)

Query: 2   ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
             +  + PI  G + +         N +++ +         L P++Y   W KY    + 
Sbjct: 39  TEDLVIKPIATGAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 99  IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 155

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E     +  + +P I  KA WA+++    
Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 212

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                            Q+  + +   EG++F   F  +  L +   M G+    + I R
Sbjct: 213 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 261

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 262 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               QY++F+A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   +
Sbjct: 316 ELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 373

Query: 350 K 350
            
Sbjct: 374 S 374


>gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 1 [Callithrix jacchus]
          Length = 351

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 28/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 18  SSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VH
Sbjct: 78  W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  +    FN    +P +  KA+WAL++                 + 
Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKS 181

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 182 TFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY 241

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                  L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R  
Sbjct: 242 -------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ++G    F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 295 VELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 323

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 30/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++ +++ +L    D   +LP+ Y   W+ Y     + W   E+ +  DL  W +   L D
Sbjct: 1   MSQENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I 
Sbjct: 58  GERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    F+    V  +  KA WAL++ +  S                 +  V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVECVKKKAEWALRWIENGS---------------FAERLVAF 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F   + + ++ + P   
Sbjct: 163 AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP--- 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++ + ++ +A  +E  +  + +P   +G+NA   +QY++F+A+R   ++G    +
Sbjct: 220 ----KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYY 275

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             T NPF +M E+I L+ + NFFE RV +YQ+   
Sbjct: 276 NAT-NPFDFM-ELISLQGKTNFFEKRVGDYQKSGV 308


>gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
 gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
          Length = 405

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 156/343 (45%), Gaps = 30/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A   +    ++ +L        L P+KY    E Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKAKTPKELEAEEPLLQENPQRFVLFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 122 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSE 179

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +    F     +P I  KA+WA+++ Q            D D  F 
Sbjct: 180 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 227

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +   
Sbjct: 228 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 283

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 284 ----HLNYRPDPTAVEAIITEAVSIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 339

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 340 LGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 380


>gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis]
          Length = 345

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 4   VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 64  LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA WA+++            
Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 169

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q+  + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 170 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 226

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 227 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 280

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 281 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331


>gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio]
          Length = 349

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E    FN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  V +   EG++F   FA I  L R   M G+    + I RDE LH NF 
Sbjct: 175 -SDTNSTFGERLVAFAAVEGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         K    +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 CLMYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +GL   +  +ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336


>gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta]
 gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta]
          Length = 393

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MERSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPNQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +   ++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 283 ----HLVQRPKHERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVAS 380


>gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC
           30864]
          Length = 352

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 151/349 (43%), Gaps = 29/349 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T    +  G  ++ +D + +L        L P++Y   W+ Y  A  + W   EV +  D
Sbjct: 17  TAEEALVNGLSKLELD-EPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKD 75

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   + L  +ER  I   L FFA+S+ +V  N++L     +  PE R +   Q   E
Sbjct: 76  LNDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIE 132

Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS  +  +I     D  E    FN    +P +  KA WAL++                
Sbjct: 133 NIHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWI-------------SD 179

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
            +       + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 180 RRSTFAHRLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACML 239

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
                     L  +        ++ +A  +E  +  + +P   +G+N    + Y++F+A+
Sbjct: 240 FGL-------LNNRPSNADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVAD 292

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           R    +G E  +K  ENPF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 293 RLLVALGQEKHYKV-ENPFDFMD-LISLQGKTNFFERRVGEYQKPGVMS 339


>gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei]
          Length = 337

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 380

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 28/345 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S ++  E    +  + +L        L P++    W+ Y  A    W   E+ +  D  
Sbjct: 46  VSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHK 105

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+   GLTDDER  +K  L FFA+S+ +V  N+       +   E R +   Q   E +
Sbjct: 106 DWE---GLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENI 162

Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  E    FN    VP +  KA WAL++              D   
Sbjct: 163 HSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRWC-------------DPKL 209

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   F  +  L +   M G+    + I RDE LH +F   +  
Sbjct: 210 ASYAERLVAFAAVEGIFFSGSFCAVFWLKKRGLMPGLCFSNELISRDEGLHTDFACLLFR 269

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           ++  + P        ++   ++ +A  +E  +    +P   +G+N+    QY++F A+R 
Sbjct: 270 KLVNKLP-------VERVAEIICDAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRL 322

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             ++G E  +  T NPF WM E+I L+ + NFFE RV EY +   
Sbjct: 323 LMELGCEKKYNST-NPFDWM-EMISLQGKTNFFEKRVGEYSKSGV 365


>gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
 gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
          Length = 424

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 27/345 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+  +  +++ +L   S    L P+++   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 83  FVGDVDLPEEEEPLLVETSRRFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDW-- 140

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D+ER  I   L FFA+S+ +V  N+V      +   E R +   Q   E +HS T
Sbjct: 141 DNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSET 200

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +  +    F+    +P +  KA+WAL++                 +    
Sbjct: 201 YSLLIDTYIREPEQREYLFDAVETIPVVKQKADWALRWI-------------SDKRATFA 247

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + +    
Sbjct: 248 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS---- 303

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  +        ++ EA  +E A+  E++P   +G+N+    QY++++A+R    +
Sbjct: 304 ---HLRRRAHPDTVLKIITEAVEIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSL 360

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           G    +  T  PF +M+  I L+ + NFFE +V EY +    + D
Sbjct: 361 GNPVHYGST-CPFDFMTN-ISLEGKTNFFEKKVAEYAKAGVARKD 403


>gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus]
 gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68]
          Length = 319

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A L+E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio]
 gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B
           (TP53 inducible) (RRM2B) [Danio rerio]
          Length = 349

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E    FN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  V +   EG++F   FA I  L +   M G+    + I RDE LH NF 
Sbjct: 175 -SDTNSTFGERLVAFAAVEGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         K    +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 CLIYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +GL   +  +ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336


>gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei]
 gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus
           scrofa]
          Length = 351

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E      ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTSENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIAD-------------RKATFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  + + R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 242 ----LVNKPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus]
          Length = 333

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL 
Sbjct: 174 TAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 355

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   L P+++   WE Y  A  + W   E+ +  DL  W +   L D ER  
Sbjct: 34  EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHF 90

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 91  ISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKD 150

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  +  KA+WAL++ +               Q    +  V +   EG
Sbjct: 151 PQERDKLFNAIDTLDCVKKKADWALRWIE---------------QASFAERLVAFAAVEG 195

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G++   + I RDE LH +F   +         HL  K  +
Sbjct: 196 IFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLY------ANHLQNKLPE 249

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T N
Sbjct: 250 ERVREIITDAVAIEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-N 308

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E+I L+ + NFFE RV EYQ+   +K
Sbjct: 309 PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMK 339


>gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
 gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
          Length = 331

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L        L P+K+   WE Y     + W   E+ +  D+  W++   L+D ER 
Sbjct: 8   QEPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERH 64

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ +     +   E + +   Q   E +HS T+  +I +   
Sbjct: 65  FISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIK 124

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E          +P +  KA+WAL++                D     +  + +   E
Sbjct: 125 DSAEKDRLLRAIETIPCVQKKADWALKWI---------------DSPVFAERIIAFAAVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G++   + I RDE LH  F   +  +      H+  +  
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCEFACLLYTK------HILNQLP 223

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ +A  +E  +  E +P   +G+NA   +QY+++IA+    ++G    F  + 
Sbjct: 224 QERVIEIMLDAVEIEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-SA 282

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E+I L  + NFFE RV EYQ+   + 
Sbjct: 283 NPFDFM-ELISLPGKTNFFEKRVGEYQKAGVMS 314


>gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus]
 gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara]
          Length = 319

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca]
          Length = 336

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 6   DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 64  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 122

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 123 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 169

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 170 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 226

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 227 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 282

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F+  ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 283 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 322


>gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 336

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 161/345 (46%), Gaps = 27/345 (7%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P++   +   V ++ +L      + L P+KY   W  Y  A  + W   EV +  D   W
Sbjct: 2   PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           + +  LTDDER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS
Sbjct: 62  EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119

Query: 129 HTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  +I +   D  E    F+    VP I  KA+WAL++                 +  
Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWI-------------SDKKSS 166

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +    
Sbjct: 167 FGERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTL- 225

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
                 L  K      + ++HEA  +E  ++ E++P   +G+NA   +QY++F+A+R   
Sbjct: 226 ------LNNKPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++G+   +    NPF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 280 ELGMPKKYGV-GNPFDFMD-MISLQGKTNFFEKRVGEYQKSGVMN 322


>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 342

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 29/331 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L  ++    + P++Y   WE Y  A  + W   EV +  D+  W++   L+  E+  I
Sbjct: 21  PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFI 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
              L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D 
Sbjct: 78  SHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 137

Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E    FN    +P +  KA WAL +  +                   +  V +   EG+
Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWIHS--------------SSLYAERLVAFACVEGI 183

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   M G+    + I RDE LH +F   + + ++ +          Q
Sbjct: 184 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLQW-------Q 236

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           K + ++HEA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +   ENP
Sbjct: 237 KVQQIVHEAVEIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYNV-ENP 295

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 FDWM-EFISLQGKANFFERRVGDYQKASVMS 325


>gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase M2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 345

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ 
Sbjct: 4   VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q
Sbjct: 64  LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  ++ +   D  E     +  + +P I  KA W +++            
Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWI----------- 169

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                    Q   + +   EG++F   F  +  L +   M G+    + I RDE LH +F
Sbjct: 170 ---GSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 226

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++
Sbjct: 227 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 280

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 281 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331


>gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus]
          Length = 319

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 376

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 162/353 (45%), Gaps = 28/353 (7%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N+T     +  +K      + +L    +   + P+KY   W+ Y  A  + W   EV + 
Sbjct: 38  NSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVASFWTVEEVDLS 97

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   W++   L+D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 98  KDYQHWEN---LSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGFQIM 154

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS  +  ++ +   D+ E    FN   E   I  KA+WAL++              
Sbjct: 155 IENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWIAD----------- 203

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              Q    +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 204 --KQAPYAERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFAC 261

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + + +K        K  +++   ++ EA  +E  Y  E +P G +G+N     QY++++
Sbjct: 262 LMFSHLKK-------KPNKERIYEIIREAVKIEQEYLTEALPVGLIGMNCELMSQYIEYV 314

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           A+    ++    L+   ENPF +M+  I ++ + NFFE RV+EYQ+   L  D
Sbjct: 315 ADHLLTELKCPKLYNM-ENPFDFMAR-ISIEAKTNFFEKRVSEYQKAGVLSTD 365


>gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small
           chain); putative [Variola major virus]
 gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 333

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSASYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL 
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
 gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
          Length = 326

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +  + +L+   +   L P+++   WE Y  A  + W   E+ +  D+  WKS   L D E
Sbjct: 1   MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I + 
Sbjct: 58  RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    FN    +  +  KA+WAL++                D    Q+  + +  
Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWI---------------DNGNFQERLIAFAA 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   +  +      H+   
Sbjct: 163 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACHLYTK------HVVNP 216

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             ++  R ++ +A  +E  +  + +P   +G+N+    QY++F+A+R   ++  E ++  
Sbjct: 217 LPKETVREIIIDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWNS 276

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           T NPF +M  +I L+ + NFFE RV +YQ+   +K
Sbjct: 277 T-NPFDFMD-MISLQGKTNFFEKRVGDYQKAGVMK 309


>gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus]
 gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus]
          Length = 319

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++FIA+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus]
          Length = 319

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans]
 gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans]
          Length = 403

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N + ++ER 
Sbjct: 77  EEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 134

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R + FFA+S+ +V  N+V      + +PE + +   Q   E +HS T+  +I +   
Sbjct: 135 FISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIK 194

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WA+++ Q              +     +  V +   E
Sbjct: 195 DPKESDFLFNAIETIPQIKEKAEWAIRWIQD-------------EDALFAERLVAFAAVE 241

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 242 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 294

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G +  +  T 
Sbjct: 295 PAIIERIITEAVEIEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT- 353

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 354 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 384


>gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi]
 gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi]
          Length = 393

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  D+  W 
Sbjct: 62  MEKVAAPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDW- 120

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 121 --VRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWI-------------SSKAANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  + +P   +G+N     +Y++F+A+R   +
Sbjct: 283 ----HLVQRPSRERIIEIVSDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 339 LGVGKIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380


>gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis]
 gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
 gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis]
 gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
          Length = 391

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  D   W 
Sbjct: 60  MEKTGSPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDWA 119

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 120 ---RLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 176

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   +  E    FN    +P++  KA+WA+ +               +     
Sbjct: 177 MYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWI-------------SSKSANF 223

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 224 AERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMY---- 279

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  +  +++   ++ +A  +E  +  E +P   +G+N     QY++F+A+R   +
Sbjct: 280 ---HHLVQRPKRERIIEIIRDAVEIEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGE 336

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 337 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVT 378


>gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
 gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
          Length = 330

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 165/327 (50%), Positives = 227/327 (69%), Gaps = 2/327 (0%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            +   D N++LPL Y WA + Y +  NN+W+P E+PMQDD++ W + + L+D ER +I+ 
Sbjct: 6   TDNEHDPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQW-NGDALSDAERQLIEW 64

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
           NLGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   
Sbjct: 65  NLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDY 124

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           L+ MY  VPSI  K  + +  T+ +  P FT  T    +EFL+DL  FYV+ EG++FY G
Sbjct: 125 LYGMYDRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAG 184

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA +L L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT  F  +   +
Sbjct: 185 FAMMLGLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDL 244

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +  A  LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L+  +  TENPFPWMS
Sbjct: 245 ITNAVELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMS 303

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351
           E +DL KEKNFFET+VTEYQ G  L W
Sbjct: 304 EQVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens]
          Length = 349

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 84/330 (25%), Positives = 149/330 (45%), Gaps = 27/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        L P+++   W+ Y  A  + W   E+ +  D+  W     L D ER  
Sbjct: 29  EPLLTEDPHRFVLFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQ--KLNDKERHF 86

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 87  IKHVLAFFAASDGIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRD 146

Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
              + E       +P +T KA WAL++              D D+    +  + +   EG
Sbjct: 147 AKEKHECLTAIDTMPCVTKKAQWALRWC-------------DPDRASFAERIIAFAAVEG 193

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  +  L +   M G++   + I RDE +H +F   + ++++ + P        
Sbjct: 194 IFFSGSFCAVFWLKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLP-------V 246

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ +A  +E  +    +P   +G+N+ +  QY++F A+R    +G   L++ T N
Sbjct: 247 ETINALIGDAVTIEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-N 305

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF WM E+I L+ + NFFE RV EY +   
Sbjct: 306 PFDWM-ELISLQGKTNFFEKRVGEYAKSGV 334


>gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus]
 gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus]
          Length = 319

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S  +  E      ++ +L        L P+K    W+ Y  A  + W   E+ + +DL 
Sbjct: 1   MSDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLK 60

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+S   L+ +ER  +   L FFA+S+ +V  N+       +++ E R +   Q   E +
Sbjct: 61  DWES---LSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENI 117

Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   D  E     N    VP +  KANWAL++              DA  
Sbjct: 118 HSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWC-------------DAGN 164

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 165 ASFAERCIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLIYS 224

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           ++  + P         +   ++  A  +E  +  + +P   +G+N+    QY++F A+R 
Sbjct: 225 KLVNQLPE-------SRIEEIITNAVEIEKEFVSDALPVELIGMNSKLMCQYIEFCADRL 277

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
              +G +  +    NPF WM E+I L+ + NFFE RV EY +   
Sbjct: 278 LGALGCKKHYMAV-NPFEWM-EMISLQGKTNFFEKRVGEYAKSGV 320


>gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus]
 gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia
           virus]
 gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR]
          Length = 319

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
 gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
          Length = 341

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 29/348 (8%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            L   Q  +   +   + +L A++    + P++Y   WE Y  A  + W   EV +  D+
Sbjct: 3   SLKESQRRDMDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+    LTD E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E 
Sbjct: 63  QQWE---ALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  ++ +   D  E    FN    +P I+ KA W L + Q+              
Sbjct: 120 IHSEMYSLLLETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 165

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + 
Sbjct: 166 PMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           + ++ + P        +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R
Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +G E  +K  ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 279 LLVTLGCERRYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324


>gi|885717|gb|AAA69333.1| C8L [Variola virus]
 gi|885826|gb|AAA69439.1| C8L [Variola virus]
 gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus]
 gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
 gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
          Length = 331

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 27/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
             ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W+  N + D+E
Sbjct: 4   ASEEPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNE 61

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I + 
Sbjct: 62  RHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTY 121

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E    FN    +P +  KA WAL++                D+       V +  
Sbjct: 122 IREAAEREHLFNAVETIPCVARKAQWALRWIND-------------DRSSFGIRLVAFAA 168

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE +H +F   +         HL  +
Sbjct: 169 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLF-------AHLRRR 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 R ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G E ++  
Sbjct: 222 PHPDVVRRIIMEAVTIEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNV 281

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           T NPF +M  +I L+ + NFFE RV++Y+  A 
Sbjct: 282 T-NPFDFMD-MISLQGKTNFFEKRVSDYKMAAV 312


>gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
 gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
          Length = 330

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 159/327 (48%), Positives = 229/327 (70%), Gaps = 2/327 (0%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            +A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD++ W + + L+D ER +++ 
Sbjct: 6   TDAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQW-NGDALSDAERQLVEW 64

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
           NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG +   
Sbjct: 65  NLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDY 124

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           ++ MY  +PSI  K  + +  T+ ++   F   T +  ++F++DL  FYV+ EG++FY G
Sbjct: 125 MYGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIFFYAG 184

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT  F  +   +
Sbjct: 185 FAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDEVVEL 244

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + EA  LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L   +  T+NPFPW+S
Sbjct: 245 ITEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDLPTQYG-TDNPFPWLS 303

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351
           E +DL KEKNFFET+VTEYQ G  L W
Sbjct: 304 EQVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 31/351 (8%)

Query: 5   TGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           T LS +Q  +  V  N  D+ +L    +   L P+KY   W  Y     + W   E+ + 
Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LT DE+  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 230 QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E     +    VP I  KA WA+++              
Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 334

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             + +   +  + +   EG++F   F  I  + + + M G+    + I RDE LH +F  
Sbjct: 335 --NNDSFAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +         H+  K   Q+   ++  A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 393 LLYK-------HMINKLSIQRVHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G   ++  ++NPF WM  +I L+ + NFFE RV +YQ+   + 
Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 494


>gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1]
          Length = 329

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 28/337 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  + +L A      +LP+++   W+ Y  A  + W   EV +  DL  W   N L  D
Sbjct: 6   EIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKD 62

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +I +
Sbjct: 63  EQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIET 122

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P++  KA WA+++                D+    +  V + 
Sbjct: 123 YVNDSAEKDSLFNAIETLPAVRRKAEWAMRWI-------------SHDKASFGERVVAFA 169

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K        
Sbjct: 170 AVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLKK------- 222

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +  +++   ++ +A  +E  +    +P G +G+NA   +QY++F+++R    +G E +F 
Sbjct: 223 RPSKERVTGIIMDAVEIEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKIFN 282

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            +ENPF +M E I ++ + NFFE RV EYQ+   +  
Sbjct: 283 -SENPFDFM-ESISIEGKTNFFEKRVGEYQKAGVMAD 317


>gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana)
           tropicalis]
 gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis]
          Length = 346

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 31/348 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG   +  G      +++  L        + P+ Y   W+ Y  A  + W   EV +  D
Sbjct: 13  TGDKNLTNGHSD---EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W+    L  +ER  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E
Sbjct: 70  LVHWE---KLKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 126

Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            VHS  +  +I +   D       FN    +P +  KA WAL++                
Sbjct: 127 NVHSEMYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWI-------------SD 173

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
            +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 174 RKASFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLM 233

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + +         K  +++   ++  A  +E  +  E +P   +G+N    + Y++F+A+
Sbjct: 234 FHYLVK-------KPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVAD 286

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           R   ++G    FK  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 287 RLLVELGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 332


>gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus]
          Length = 398

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A N   +  +  +   +   + +L        + P++Y   W+ Y  A  + W   EV 
Sbjct: 58  LAKNEMSAAHKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 117

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DLA W+    L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 118 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGFQ 174

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E    FN    +P +  KA+WAL +            
Sbjct: 175 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWI----------- 223

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
              + Q    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 224 --SSKQANFGERVVAFAAVEGIFFSGTFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 281

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +          L  K  Q++   ++ EA L+E  +  + +P   +G+N     QY++
Sbjct: 282 ACLMFKY-------LVQKPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIE 334

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F A+R   ++G++ ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 335 FEADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 384


>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
 gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
          Length = 412

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N +++ ER 
Sbjct: 88  DEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWN--NKMSEGERY 145

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 146 FISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSR 205

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WA+++ Q              D     +  V +   E
Sbjct: 206 DTEESEFLFNAIENIPPIKEKAEWAIRWIQD-------------DTALYAERLVAFAAVE 252

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  +  
Sbjct: 253 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNRPS 305

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G E  +  T 
Sbjct: 306 PDIVERIITEAVSIEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT- 364

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 365 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 396


>gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus]
          Length = 319

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L + + M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRDLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  ++++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVKSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|885759|gb|AAA69374.1| E4L [Variola virus]
 gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus]
 gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 155/328 (47%), Gaps = 28/328 (8%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            +       L P+ Y   W  Y     + W   E+ +  DL+ W     L  DER  I  
Sbjct: 6   TDEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHK--KLNPDERHFISM 63

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
            L FFA ++ +V  N+     R ++ PE R +   Q   E++H  T+  +I +   D   
Sbjct: 64  VLAFFAGADGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKV 123

Query: 143 -GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LF+ +  VPS+  KA+WA +Y                 +    +  V +   EG++F
Sbjct: 124 RERLFSAHATVPSVERKASWAQRYI--------------GSKASFAERLVAFAAVEGIFF 169

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              F  I  L +   M G+    + I RDE LH +F   + +++K+       K  Q++ 
Sbjct: 170 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKL-------KLSQEEI 222

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           +T+++EA  +E ++  + +P   +G+N+    QY++F+A+R    +G + ++  ++NPF 
Sbjct: 223 QTIINEAVDVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFD 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           WM  +I L+ + NFFE RV EYQ+   +
Sbjct: 282 WMD-MISLEGKTNFFEKRVGEYQKSGVM 308


>gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera
           kw1407]
          Length = 378

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 32/341 (9%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NNT +S I+A E      ++ +L   +    L P+KY   W+ Y     + W   E+ + 
Sbjct: 47  NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L DDER  +   L FFA+S+ +V  N+V      +  PE R +   Q  
Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS T+  +I +   D  +    FN    +P I  KA+WAL++              
Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWI------------S 207

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D +  F Q L  F  V EG++F   F+ I  L +   M G+    + I RDE LH +F  
Sbjct: 208 DRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 266

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + +       HL  +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 267 LLFS-------HLKNRPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEFV 319

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           A+R    +G + ++  T NPF +M E I L  + NFFE RV
Sbjct: 320 ADRLLVALGNDKVYNST-NPFDFM-ENISLGGKTNFFEKRV 358


>gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +H  T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +     ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen]
          Length = 319

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate
           reductase [Arabidopsis thaliana]
 gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A;
           AltName: Full=Ribonucleoside-diphosphate reductase R2A
           subunit; Short=AtRNR2; Short=Protein R2at; AltName:
           Full=Ribonucleotide reductase small subunit A
 gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
           thaliana]
          Length = 341

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 29/348 (8%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            L   Q  +      ++ +L A++    + P++Y   WE Y  A  + W   EV +  D+
Sbjct: 3   SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+    LTD E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E 
Sbjct: 63  QQWE---ALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  ++ +   D  E    FN    +P I+ KA W L + Q+              
Sbjct: 120 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 165

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + 
Sbjct: 166 PMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           + ++ + P        +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R
Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +G E  +K  ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 279 LLVTLGCERTYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324


>gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 340

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 29/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
                +++ +L   S    + P++Y   WE Y  A  + W   EV +  D+  W+S   L
Sbjct: 12  PDEEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---L 68

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           ++ E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  +
Sbjct: 69  SNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLL 128

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   D  E    FN    +  +  KA WAL + Q+                   +  +
Sbjct: 129 LETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQS--------------STLFAERLI 174

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++ + P 
Sbjct: 175 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPW 234

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  QK   ++HEA  +E  +  E +P   +G+NA    QY++F+A+R    +G E 
Sbjct: 235 -------QKVHHIVHEAVEIETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGYER 287

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 288 KYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASIMS 324


>gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
 gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
          Length = 331

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 29/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +     D+ +L    D   L P+++   WE Y  A  + W   E+ +  D   W++   L
Sbjct: 3   EVTTFQDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---L 59

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+ E   IK  L FFA+S+ +V  N+       +   E + +   Q   E VHS T+  +
Sbjct: 60  TEGETHFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLL 119

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +  +  KA+WAL++                D+    +  +
Sbjct: 120 IDTYVKDNKEKDKLFNAIDTMDCVKKKADWALRWI---------------DEGNYAERLI 164

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   F  I  L +   M G+    + I RDE LH +F   + N       H
Sbjct: 165 AFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYN------DH 218

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  ++K   ++ +A  +E  +  +++P   +G+NA    QY++F+A+R   ++  + 
Sbjct: 219 LVNKLSKEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDK 278

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++  + NPF +M E+I L+ + NFFE RV +YQ+   +K
Sbjct: 279 VYG-SSNPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315


>gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
 gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
          Length = 377

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 27/344 (7%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            L+   +    +  +D+ +L        L P++Y   W  Y  A  + W   E+ +  D+
Sbjct: 46  SLAGAASETVLIRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDM 105

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W     L D+ER  IK  L FFA+S+ +V  N+V      +   E R +   Q   E 
Sbjct: 106 RDW--TERLDDNERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMEN 163

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS T+  +I +   D  E    F     +P I  KA+WAL++                 
Sbjct: 164 IHSETYSLLIDTYIKDPQERDHLFAAIETIPCIKRKADWALRWI-------------SDK 210

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                +  V +   EG++F   FA I  L +   M G+    + I RDE +H  F   + 
Sbjct: 211 SSTFAERLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLF 270

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           +       HL  +      + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R
Sbjct: 271 S-------HLRHRPHPSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
             + +G   ++  T NPF +M  +I L+ + NFFE RV+EY + 
Sbjct: 324 LLYSLGQNKIYNAT-NPFDFMD-MISLQGKTNFFEKRVSEYAKA 365


>gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16]
 gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16]
 gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus]
 gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus]
 gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus]
 gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum
           PN500]
          Length = 335

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   L P+KY   W+ Y  A  + W   E+ +  D+  W+  N L D+ER 
Sbjct: 6   EEPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWE--NKLNDNERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 64  FITNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D   +  +F+    +P++  KA+WAL++               ++ +   +  V +   E
Sbjct: 124 DSETKRNIFHAIDTIPAVKKKADWALRWI--------------SNSKSFAERLVAFAAVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +++        K  
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQ-------NKLD 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                T++ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + ++  + 
Sbjct: 223 NNTIETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SS 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+++ NFFE +V+EYQ+    K
Sbjct: 282 NPFDWM-EMISLQRKTNFFEGKVSEYQKSGVAK 313


>gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans
           morsitans]
          Length = 396

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 28/354 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + T  +       + +   + +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 57  KDATVTTASDNSVAKFDPSIEPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L+D ER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 117 SKDMDDW---NRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 173

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +  +DE E    FN    +P +  KA WAL +             
Sbjct: 174 AMENVHSEMYSLLIETYIMDEKEREYLFNAIETMPLVKKKAEWALAWI------------ 221

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             +      +  + +   EG++F   FA I  L +   M G+    + I RDE LH  F 
Sbjct: 222 -SSHSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNEMISRDEGLHCEFA 280

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           + +         HL  K  +++   ++ +A  +E  +  E +P   +G+N+ S  +Y+++
Sbjct: 281 VLMFK-------HLIQKPSKERILEIITDAVKIEKEFLTEALPVDLIGMNSESMCKYIEY 333

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+R   ++ +   +   ENPF +M++ I +  + NFFE RV EYQ+      D
Sbjct: 334 VADRLLLELDVGKYY-LAENPFEFMNK-ISIDGKTNFFEKRVGEYQKIGVSSDD 385


>gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma
           mansoni]
 gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative
           [Schistosoma mansoni]
          Length = 365

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 155/338 (45%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +  ++ + +L        L P++Y   W  Y  A  + W   EV +  D   W+S   L 
Sbjct: 37  KSEIELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LK 93

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER  I   L FFA+S+ +V  N++    + +  PE R +   Q   E +HS  +  +I
Sbjct: 94  VGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLI 153

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +  +  KA WAL +                 +    +  V 
Sbjct: 154 DTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI-------------GDSKSTFAERLVA 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G++   + I RDE LH +F   +         H+
Sbjct: 201 FAAVEGVFFSGSFAAIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLFK-------HI 253

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +++  +++ EA L+E  +  E +P   +G+N     QY++FIA+R   ++G E +
Sbjct: 254 IKKPPKERVESIIREAVLIEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKM 313

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + +++NPF +M E I ++ + NFFE RV EYQ+   + 
Sbjct: 314 Y-HSDNPFDFM-ENISIEGKTNFFEKRVGEYQRAGVMS 349


>gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus]
 gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus]
          Length = 319

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRYIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 324

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/330 (27%), Positives = 153/330 (46%), Gaps = 28/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   W+ Y +A  + W   EV +  DL  W+  N L D+ER  
Sbjct: 4   EPLLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQ--NKLNDNERFF 61

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I R L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 62  ISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKD 121

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E          +P +T KA WAL++                 +    +  + +   EG
Sbjct: 122 PAEKDYLLRAIETIPCVTKKAKWALRWI---------------TKGSFAERLIAFAAVEG 166

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +         HL  K  +
Sbjct: 167 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------VNHLQNKLSE 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G   ++  T N
Sbjct: 221 ETIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-N 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF +M E+I L+ + NFFE RV EYQ+   
Sbjct: 280 PFDFM-ELISLQGKTNFFERRVGEYQKTGV 308


>gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 401

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 27/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+      D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  DL  W+ 
Sbjct: 63  FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D+ER  I+  L FFA+S+ +V  N+V      +   E + +   Q   E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D       F+    +P I  KA+WAL++                 +    
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAIDTIPCIRKKADWALRWI-------------SDKRSCFG 227

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 228 ERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT---- 283

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 284 ---HLRRRPHPDTIARIIKEAVTIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAM 340

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G E ++  T NPF +M E+I L+ + NFFE+RV+ Y +   
Sbjct: 341 GNEKIWNST-NPFDFM-EMISLQGKANFFESRVSAYSKSGV 379


>gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335710|gb|AAA48294.1| F14 [Vaccinia virus]
          Length = 319

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N +T DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   +   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
 gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
          Length = 335

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 28/334 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            + ++ +L    D   L P+KY   W  Y  A  + W   E+ +  DL  W S   L D+
Sbjct: 3   QIIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSS--KLNDN 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +
Sbjct: 61  ERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDT 120

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  +    FN    +P I  KA+WAL++                + +   +  V + 
Sbjct: 121 YIKDNEQKSKLFNAIDTIPCIKKKADWALKWIN--------------NSDSFAERLVAFA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH NF   +  +       L  
Sbjct: 167 AVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTK-------LIN 219

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   +    ++ +A + E  +  +++P   +G+N+ S  QY++F A+R    +G + ++ 
Sbjct: 220 KLESKTLEAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYN 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            + NPF WM E+I L+++ NFFE +V EY +   
Sbjct: 280 AS-NPFDWM-EMISLQRKTNFFEGKVAEYAKTGV 311


>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
          Length = 335

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   L P+KY   W  Y  A  + W   E+ +  D+  W+  N L D+ER 
Sbjct: 6   EEPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWE--NKLNDNERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 64  FIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  E    FN    +P +  KA+WAL++                + +   +  V +   E
Sbjct: 124 NPDEKKVLFNAIETIPCVKKKADWALRWI--------------TNSKSFAERLVAFAAVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + N+       L  K  
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNK-------LNNKLD 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +   +++ +A   E  +  +++P   +G+N+    +Y++F A+R    +G + ++  + 
Sbjct: 223 VKTIESIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SA 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L ++ NFFE +V+EY +    K
Sbjct: 282 NPFDWM-EMISLMRKANFFEGKVSEYAKAGVAK 313


>gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Meleagris gallopavo]
          Length = 339

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/319 (28%), Positives = 149/319 (46%), Gaps = 28/319 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   W  Y  A  + W   EV +  DL  W+S   L  +E+  I   L FFA+S+ 
Sbjct: 33  FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151
           +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E    FN    
Sbjct: 90  IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA+WA+++                 +    +  V +   EG++F   FA I  L
Sbjct: 150 LPCVKKKADWAIRWI-------------GDKKATYGERVVAFAAVEGIFFSGSFASIFWL 196

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   M G+    + I RDE LH +F   +         HL  K  +++ + ++  A L+
Sbjct: 197 KKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVLI 249

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  ENPF +M E I L+ 
Sbjct: 250 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV-ENPFDFM-ENISLEG 307

Query: 332 EKNFFETRVTEYQQGAELK 350
           + NFFE RV EYQ+   + 
Sbjct: 308 KTNFFEKRVGEYQRMGVMS 326


>gi|297209|emb|CAA48969.1| C8L [Variola virus]
 gi|745144|prf||2015436AF C8L gene
          Length = 333

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL 
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NP  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
 gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
          Length = 354

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 153/352 (43%), Gaps = 28/352 (7%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
                   +     +  D+ +L    +   L P++Y   WE Y  A  + W   EV    
Sbjct: 7   TANARATSSSVGSPSELDEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTG 66

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  +   + L ++ER  IK  L FFA+S+ +V  N+       +  PE R +   Q   
Sbjct: 67  DLYDF--DHKLKEEERRFIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAM 124

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E VHS  +  ++     D  E    FN  + + ++  KA+WAL++               
Sbjct: 125 ENVHSEMYSVLLDHYVRDPAERRQLFNAIQTIATVGKKADWALRWI-------------- 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +      +  V +   EG+ F   F  I  L +   M G++     I RDE LH +F   
Sbjct: 171 SSSNSFAERLVAFACVEGIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACC 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +         HL  +  +++   ++ EA  LE  +  E +    +G+NA    QY++F+A
Sbjct: 231 LY-------GHLKNRLSRERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVA 283

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +R    +G +  +  T NPF WM E+I L+ + NFFE RV EYQ+   +  D
Sbjct: 284 DRLLVSLGYDKYYN-TVNPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333


>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila]
 gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 376

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 37/358 (10%)

Query: 4   NTGLSPI--------QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
            TG++P+        +    +   +D+ +L    +   L P+KY   WE Y     + W 
Sbjct: 32  ATGMNPLPLLKSKNDEGKAPKEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWT 91

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
             E+ +  DL  W+    LTD+ER  IK  L FFA+S+ +V  N+       +  PE R 
Sbjct: 92  ADEIDLYQDLKDWE---RLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARA 148

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSP 172
           +   Q   E +HS T+  +I +   DE E    F   + VP I  KA WAL++       
Sbjct: 149 FYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWIN----- 203

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                    + +      + +   EG++F   F  I  L + + M G+    + I RDE 
Sbjct: 204 ---------NNDNFASRLIAFAAIEGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEG 254

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           LH +F   + + +         K  +++   ++ EA  +E  +  E +P   +G+N+   
Sbjct: 255 LHTDFACLLYSMLNK-------KLTKEEIYEIITEAVEIEKEFISEALPVELIGMNSNMM 307

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +QY++F+A+R    +G+   +  ++NPF WM  +I ++ + NFFE RV EYQ+   + 
Sbjct: 308 KQYLEFVADRLLFALGVPKFYN-SKNPFEWMD-MISIQGKTNFFEKRVGEYQKANVMS 363


>gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia]
          Length = 355

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 31/351 (8%)

Query: 5   TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           T LS +QA +  +N +  D+ +L    +   L P+KY   W  Y     + W   E+ + 
Sbjct: 18  TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LT DE+  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 78  QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E     +    VP I  KA WA+++              
Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 182

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             + +   +  + +   EG++F   F  I  + + + M G+    + I RDE LH +F  
Sbjct: 183 --ENDSFAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 240

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +         HL  K   Q+   ++  A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 241 LLYK-------HLVNKMSNQRIHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 293

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G   ++  ++NPF WM  +I L+ + NFFE RV +YQ+   + 
Sbjct: 294 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 342


>gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276]
 gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii
           WM276]
          Length = 401

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 27/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+      D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  DL  W+ 
Sbjct: 63  FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D+ER  I+  L FFA+S+ +V  N+V      +   E + +   Q   E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D       F+    +P I  KA+WAL++                 +    
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAMDTIPCIRKKADWALRWI-------------SDKRSCFG 227

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 228 ERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT---- 283

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              HL  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 284 ---HLRRRPHPDTIARIIKEAVSIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAL 340

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G E ++  T NPF +M E+I L+ + NFFE+RV+ Y +   
Sbjct: 341 GNEKIWNST-NPFDFM-EMISLQGKANFFESRVSAYSKSGV 379


>gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FF +S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa]
 gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa]
          Length = 342

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 31/341 (9%)

Query: 15  KRVNVDDK--RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +R+  +DK   +L  ++    + P++Y   WE Y  A  + W   EV +  D+  W+   
Sbjct: 11  ERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWE--- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+D E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  + 
Sbjct: 68  ALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSEMYS 127

Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            ++ +   D  E    FN    +P +  KA WAL + Q+                   + 
Sbjct: 128 LLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQS--------------SMVFAER 173

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++ + 
Sbjct: 174 LVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQRQL 233

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                    QK   ++ EA  +E  +  E +P   +G+NA     Y++F+A+R    +G 
Sbjct: 234 HW-------QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGY 286

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 287 QKKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 325


>gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 348

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 150/341 (43%), Gaps = 28/341 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A E+  +   + +L        + P++Y   W  Y  A  + W   EV +  D + W+  
Sbjct: 20  APERPFDPRAEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWE-- 77

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L D+ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +
Sbjct: 78  -RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEMY 136

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +      E     N    +P +  KA WAL++                 +    +
Sbjct: 137 STLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIA-------------GREAAFGE 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +       
Sbjct: 184 RLVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFK----- 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL  +    + R ++ +A  +E  +  E +P   +GLN  +  QY++F+A+R   ++ 
Sbjct: 239 --HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLELV 296

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               +  T NP  +M+ +I L+ + NFFE +V EYQ+   +
Sbjct: 297 GAKHYN-TPNPLDFMN-LISLEGKTNFFEKKVGEYQKFGVM 335


>gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa]
          Length = 333

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W+  EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E    FN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL 
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NP  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe 972h-]
 gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe]
          Length = 391

 Score =  315 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 27/339 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 59  KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDW--DNKL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +  PE R     Q   E +HS T+  +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   +  E    F+    + SI AKA WAL++              D D  +   L  
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +       H
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------H 276

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  +  ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + 
Sbjct: 277 LKHRPGRKVVEAIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  T NPF +M E I L  + NFFE +V++YQ    + 
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373


>gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  315 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FF +S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGXGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
 gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
          Length = 324

 Score =  315 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + + +L+   +   L P+++   W  Y  A  + W   E+ +  DL  W++   L+DDE
Sbjct: 2   ANAEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWET--KLSDDE 59

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I + 
Sbjct: 60  RHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTY 119

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D+ E    FN    +  +  KA+WAL++                D     +  V +  
Sbjct: 120 IKDQKEKNHLFNALDTIDCVRKKADWALRWI---------------DNGSFAERLVAFAA 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G++   + I RDE LH +F   +  +      HL  +
Sbjct: 165 VEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------HLIHQ 218

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   +F  
Sbjct: 219 LSKEQVQEIILDAVEIEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN- 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           T NPF +M  +I ++ + NFFE RV EYQ+   + 
Sbjct: 278 TTNPFDFMD-MISIQGKTNFFEKRVAEYQKSGVMS 311


>gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 379

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 28/348 (8%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           N  +S  +  E    +  +  L    +   L P++    W+ Y  A  + W   E+ +  
Sbjct: 42  NLEMSEFKRKEMNGEIPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVH 101

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W   + LTD+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q   
Sbjct: 102 DLKDW---SKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAI 158

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  +I +   D  E          +P +T KA+WA+++              D
Sbjct: 159 ENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWAIKWC-------------D 205

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                  +  + +   EG++F   F  I  L +   M G++   + I RDE +H +F   
Sbjct: 206 PRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACL 265

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + ++       L TK  + +   ++ +A  +E  +  +++P   +G+N+    QY++F+A
Sbjct: 266 LYSK-------LVTKLPESRVHEIVRDAVTIEHEFVRDSLPVELIGMNSGLMCQYIEFVA 318

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +R  + +G+  ++ + +NPF WM  +I L+ + NFFE RV EY +   
Sbjct: 319 DRLLYSLGVSKIY-HAKNPFDWMD-MISLQGKTNFFEKRVGEYSKAGV 364


>gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 158/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   ++ +L    D   + P+KY   W+KY  + ++ W   E+ +  DLA W+    + +
Sbjct: 12  LQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWE---KMNE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ 
Sbjct: 69  GEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLD 128

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   + +    +P I  KANWA+++ ++                   +  V +
Sbjct: 129 TYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAF 174

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++ 
Sbjct: 175 AAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIV 228

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++ R ++  A  +E  +  + +P   +G+NA     Y++F+A+R    +G E  +
Sbjct: 229 NKLPKERIREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHY 288

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 289 N-SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata]
          Length = 387

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P++Y   W+ Y  A  + W   EV +  D   W+    L   E+ 
Sbjct: 59  DEPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEE--KLKPQEKY 116

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I +L  
Sbjct: 117 FISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIK 176

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P +  KA WAL++                D     +  V +   E
Sbjct: 177 DPIEKSNLFNAIETMPCVQKKAVWALKWIN-------------KDCASFSERVVAFAAVE 223

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L + N + G+    + I RDE LH +F   +         H+  K  
Sbjct: 224 GIFFSGSFAAIFWLKKRNLLPGVTFSNELISRDEGLHCDFACLMYK-------HIVNKPS 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +EI +  E++P   +G+N    + Y++F A+R  + +G    +   E
Sbjct: 277 EERVKQIIRDAVAIEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWNV-E 335

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L ++ NFFE+RV++YQ+   + 
Sbjct: 336 NPFDFM-ENISLARKANFFESRVSDYQKAGVMD 367


>gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi]
 gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L PL+Y   WE Y  A  + W   EV +  D+  W +   LT +E+ 
Sbjct: 18  EEALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQH 74

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +H+  +  +I +L  
Sbjct: 75  FIKSVLAFFAASDGIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIK 134

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ E    FN    VPS+  KA WA+++                ++    +  + +   E
Sbjct: 135 DQRERHRLFNAIDTVPSVQKKARWAMKWIN--------------NENLFAERLLAFACVE 180

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+A   + I RDE LH +F   + + +K      +TK  
Sbjct: 181 GIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKLP 234

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           QQ   +++ EA  +E  +  E++P   +G+N+   +QY++ +A+R    +G + ++  + 
Sbjct: 235 QQVVHSLVSEAVEIEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-SP 293

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM+ +I +  + NFFE +V EY +   + 
Sbjct: 294 NPFDWMN-IISVSGKTNFFEKKVGEYAKANIMS 325


>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
          Length = 400

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/344 (29%), Positives = 155/344 (45%), Gaps = 27/344 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +   E +    D+ +LN   D   L P+KY   W+ Y  A  + W   E+ +  DL  W 
Sbjct: 64  VHRHELKELEKDEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN 123

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L ++ER  I R L FFA+S+ +V  N+V         PE + +   Q   E +HS 
Sbjct: 124 --NRLNENERFFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSE 181

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   D  E    FN    +P I  KA WAL++                 +   
Sbjct: 182 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIAN-------------SEALF 228

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +     
Sbjct: 229 AERLVAFAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF---- 284

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  K   +    ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    
Sbjct: 285 ---AHLNHKPDPEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVA 341

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            G + ++   ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 342 FGNKKVYNV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae]
 gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae]
          Length = 393

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 28/342 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSATPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +    FN    +P++  KA+WAL +               +     
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALAWI-------------SSKSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +     
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
               HL  K  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 283 ----HLVQKPRRERIIEIIRDAVDIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGV 378


>gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
 gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
          Length = 362

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 27/339 (7%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G+      ++ +L        L P++Y   W  Y     + W   E+ +  DL  W+ + 
Sbjct: 34  GDVDCPEHEEPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER- 92

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            + D+ER  I   L FFA+S+ +V  N++      +  PE R +   Q   E VHS T+ 
Sbjct: 93  -MNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYS 151

Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  +     N    +P +  KA WAL++              D    F   L
Sbjct: 152 LLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWIA------------DRRSSFAIRL 199

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE +H +F   ++  ++   
Sbjct: 200 VAFSAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLLTHMRR-- 256

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                +   +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +G 
Sbjct: 257 -----RPHPEVIEMIIKEAVAIEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVALGN 311

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           + ++  T NPF +M  +I L+ + NFFE RV++Y+  A 
Sbjct: 312 DKVWNAT-NPFDFMD-MISLQGKTNFFEKRVSDYKIAAV 348


>gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe]
 gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small
          Length = 391

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 27/339 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 59  KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDW--DNKL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +  PE R     Q   E +HS T+  +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   +  E    F+    + SI AKA WAL++              D D  +   L  
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +       H
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------H 276

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  +  ++  + ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + 
Sbjct: 277 LKHRPGRKLLKPIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  T NPF +M E I L  + NFFE +V++YQ    + 
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373


>gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus]
 gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 319

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+    + + 
Sbjct: 13  QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +
Sbjct: 70  EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   + +    +P I  KANWA+++ ++                   +  V + 
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAFA 175

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++  
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   ++ R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  + 
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
 gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
          Length = 328

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y  +  + W   E+ +  DL  WK    LTDDER  
Sbjct: 5   EPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWK--GKLTDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    FN     P+I  KA+WAL++                D     +  + +   EG
Sbjct: 123 EVEKDKLFNALENFPAIKKKADWALKWI---------------DSPSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++  A  +E  +  E++P   +G+N+    QY++++ +R   ++  E ++  T N
Sbjct: 222 ERITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M  +I L+ + NFFE RV EYQ+   +K 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVVKD 312


>gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 379

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 28/339 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +   ++ +L        L P++Y   W  Y  A  + W   E+ +  D+  W  
Sbjct: 44  FVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW-- 101

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + LT+ ER  + R L FFASS+ +V  N+V      +  PE R +   Q   E VHS T
Sbjct: 102 -SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSET 160

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E    F     +PSI  KA WAL +T                     
Sbjct: 161 YSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTWT-------------SDKSTTFA 207

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V + V EG++F   FA I  + +   + G+    + I RDE +H +F   +   ++ 
Sbjct: 208 ERLVAFAVVEGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLRK 267

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +        ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +
Sbjct: 268 -------RPHSDTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSL 320

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           G +  + + +NPF +M E+I ++ + NFFE RV++Y + 
Sbjct: 321 GNDKHY-HVDNPFDFM-ELISMEGKANFFEKRVSDYAKA 357


>gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 361

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 151/351 (43%), Gaps = 28/351 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M N      + A     +   + +L        + P+ Y   W  Y     + W   EV 
Sbjct: 18  MTNKNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWAMYKKQEASFWNVEEVN 77

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           ++ DL  W     LTDDER  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 78  LKSDLEDW---MKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 134

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E    FN    +P +  KA+WAL++            
Sbjct: 135 IMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWALKWI----------- 183

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                +    +  V +   EG++F   FA +  L +   M G+    + I RDE LH +F
Sbjct: 184 --SDSKATFGERLVAFAAVEGIFFSGSFAALFWLKKRGLMPGLTFSNELISRDEGLHTDF 241

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +         HL  K  Q     ++ EA  +E  +    +P   VG++      Y++
Sbjct: 242 ACLLFK-------HLEQKPPQAVITHIICEAVTIEQDFLTNALPVRMVGMSCEKMAVYIE 294

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           F+A+R  +++G   ++  + NPFP+M  +I  + + NFFE RV +YQ+ + 
Sbjct: 295 FVADRLLNELGCPTVY-RSSNPFPFMD-LISQQGKTNFFEKRVGDYQKASV 343


>gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
 gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
          Length = 313

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 169/313 (53%), Positives = 230/313 (73%), Gaps = 3/313 (0%)

Query: 1   MANNTGLSPIQAGEK-RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58
           M+     + ++ G+  RV  +DKR++N  + DVNQL+PLKY WAWE Y++ C NHWMPTE
Sbjct: 1   MSIPNVENQLETGDGQRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTE 60

Query: 59  VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           VPM  D+  W+S + LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLL
Sbjct: 61  VPMTKDIETWRS-DKLTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLL 119

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           RQAFEEAVHSHTF Y++ SLGL+EGE+FNMY EVP+I  K  + ++ T  + SP F+T +
Sbjct: 120 RQAFEEAVHSHTFLYVVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDS 179

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            +  Q FL++L  +Y++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLNFG
Sbjct: 180 YEGLQAFLKNLIGYYIIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFG 239

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           ID+IN IK ENP LWT EFQ +   ++ +A  LEI YA + +P G +GLN      Y+ +
Sbjct: 240 IDLINGIKAENPDLWTAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHY 299

Query: 299 IANRRCHQIGLEP 311
           +A+RR  +IGL  
Sbjct: 300 VADRRVERIGLPK 312


>gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
 gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
          Length = 323

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 28/331 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + P+++   W+ Y  A  + W   EV +  D+  W+  N L  DER 
Sbjct: 2   NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQ--NKLNKDERY 59

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   
Sbjct: 60  FISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIK 119

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E          +P +  KA+WAL++ ++               +   +  + +   E
Sbjct: 120 DPKEKDHLLRAIETIPCVGKKADWALEWIES---------------DNFAERLIAFAAVE 164

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 165 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------VNHLKNKLP 218

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ +A  +E  +  E +P   +G+NA    QY++F+A+R    +G + ++  T 
Sbjct: 219 EETVQKIIADAVEVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT- 277

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NPF +M E+I L+ + NFFE RV EYQ+   
Sbjct: 278 NPFDFM-ELISLQGKTNFFERRVGEYQKSGV 307


>gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W    + + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan]
          Length = 319

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE L  +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLRCDFACLMFK-------HLLHPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    E Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQQ   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQQMGVMS 307


>gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
 gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
          Length = 330

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 152/334 (45%), Gaps = 28/334 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N   + +L +  +   L P++    W+ Y  A  + W   E+ +  DL  W     L DD
Sbjct: 3   NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDE--KLNDD 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+ +     + +PE R +   Q   E +H+ T+  +I +
Sbjct: 61  ERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDT 120

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    VP +  KA WAL++                D+    +  + + 
Sbjct: 121 YIKDADEKHRLFNALETVPCVKKKAEWALRWI---------------DKGSFAERLIAFA 165

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G++   + I RDE LH +F   + N           
Sbjct: 166 AVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYNSYIK------N 219

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   +   +++  A  +E  +  + +P   +G+N+    +Y++F+A+R   ++G E  + 
Sbjct: 220 KLPNETVVSIIKNAVEIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            T NPF +M E+I L+ + NFFE RV+EY +   
Sbjct: 280 -TANPFDFM-EMISLEGKTNFFEKRVSEYSKAGV 311


>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana]
          Length = 340

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 30/348 (8%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            L   Q  +      ++ +L A++    + P++Y   WE Y  A  + W   EV +  D+
Sbjct: 3   SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+    LTD E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E 
Sbjct: 63  QQWE---ALTDSEKHFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGFQIAMEN 118

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  ++ +   D  E    FN    +P I+ KA W L + Q+              
Sbjct: 119 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 164

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   V +   EG++F   F  I  L +   M G+    + I RDE LH +F   +I
Sbjct: 165 PMSFAVRLVAFACAEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLI 224

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           + +++  P        +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R
Sbjct: 225 SLLQLHVPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 277

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +G E  +K  ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 278 LLVTLGCERTYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 323


>gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus]
 gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96]
 gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS]
          Length = 319

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT +E+  
Sbjct: 2   EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +   +++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++    N
Sbjct: 218 ETVISIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+    + + 
Sbjct: 13  QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +
Sbjct: 70  EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   + +    +P I  KANWA+++ ++                   +  V + 
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAFA 175

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++  
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   ++ R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  + 
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta]
          Length = 426

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 28/339 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGL 74
             N + + +L    +   + P++Y   WE Y  A  + W   EVP+   D   W     L
Sbjct: 94  DFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDE--KL 151

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DE+  I   L FFA+S+ +V  N++    + +   E R +   Q   E +HS  +  +
Sbjct: 152 NSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYSLL 211

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +P +  KA WAL +                +     +  +
Sbjct: 212 IETYISDPKEKDFLFNAIETLPCVGKKAKWALNWINH-------------ESATFPERVI 258

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 259 AFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLIFK-------H 311

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K   +  ++++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G E 
Sbjct: 312 IIQKPSFEHVKSIIMDAVEIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGFEK 371

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++  +ENPF +M+  I L+ + NFFE +V EY++   ++
Sbjct: 372 VYN-SENPFSFMN-FISLEGKTNFFEKKVGEYKKFGVVE 408


>gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299]
 gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299]
          Length = 335

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 29/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
            ++    V    + +L+   D   + P+KYG  WE Y  A  + W   EV + DD+  W 
Sbjct: 3   AESNNNEVAKVAEPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW- 61

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L +DE+  IK  L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS 
Sbjct: 62  --NKLNNDEKHFIKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSE 119

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  E    F   + +P I  KA+WA ++ ++                  
Sbjct: 120 MYSLLIDAYVKDAQEKTYLFQAIQNIPCIAKKADWAFKWIES--------------SADF 165

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + I 
Sbjct: 166 AERLIAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYIN 225

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   K  +   R ++ EA  +E  +  + +P   VG+NA    +Y++F+A+    Q
Sbjct: 226 K-------KPNESVVRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQ 278

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+   +    NPF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 279 LGMSKEYNAA-NPFDWM-ELISLQGKTNFFEKRVGEYQKSGVMN 320


>gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              +   + +L   +    + P++Y   W  Y  A  + W   EV +  D+  WK    L
Sbjct: 87  ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 143

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +
Sbjct: 144 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 203

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +L  D  E    FN    +P+I  KA+WAL++                         +
Sbjct: 204 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWI--------------GADAPYSVRVI 249

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 250 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYK-------H 302

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  Q++   ++ +A  +E  +  + +P   +G+N    + Y++F+A+R   ++    
Sbjct: 303 MVQKPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 362

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++K  ENPF +M E+I L+ + NFFE +V+EY +   +
Sbjct: 363 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 398


>gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 382

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 145/331 (43%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+K+   WE Y  A  + W   EV +  D   W++   L ++E+  
Sbjct: 63  EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHF 119

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +   L FFASS+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D
Sbjct: 120 VSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 179

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ELF     VP++  KA+WAL +                      +  V +   EG
Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWI--------------GSDASFPERLVGFACVEG 225

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +   ++           +
Sbjct: 226 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGMLQ-------NPLSE 278

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G   LF    N
Sbjct: 279 ATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV-N 337

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM E+I L+ + NFFE RV +YQ+   +
Sbjct: 338 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 367


>gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 4 [Canis familiaris]
          Length = 374

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 160/365 (43%), Gaps = 51/365 (13%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEI-----------------------AYAHETMPKGF 284
               L  K  +++ R ++  A  +E                         +  E +P G 
Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGL 297

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ
Sbjct: 298 IGMNCVLMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQ 355

Query: 345 QGAEL 349
           + A +
Sbjct: 356 RFAVM 360


>gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 3 [Canis
           familiaris]
          Length = 381

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 43/348 (12%)

Query: 8   SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            P +   K +  + +++ +L        + P++Y   W+ Y  A  + W   EV +  D+
Sbjct: 59  EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E 
Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175

Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  +I +   D  E    FN    +P +  KA+WAL++                 
Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 222

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 223 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 282

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
                   HL  K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+   
Sbjct: 283 K-------HLVHKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVF-- 333

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
                         ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 334 ------------RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 368


>gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 338

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 153/326 (46%), Gaps = 29/326 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           A S+   + P+KYG  WE Y  A  + W   EV + DD+  W+    L+DDE+  I   L
Sbjct: 20  AGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWE---KLSDDEKHFISHIL 76

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145
            FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D  +  
Sbjct: 77  AFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKK 136

Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
             F     +P +  KA+WAL++ ++                   +  + +   EG++F  
Sbjct: 137 YLFEAMENIPCVAKKADWALKWIES--------------SATFAERLIAFACIEGIFFSG 182

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            F  I  L +   M G+    + I RDE LH +F   + + ++        K      R 
Sbjct: 183 SFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYSYLQ-------NKPDVSIVRQ 235

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ EA  +E  +  + +P   VG+N     +Y++F+A+    Q+GLE  +  T NPF +M
Sbjct: 236 IVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TVNPFEFM 294

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL 349
            E+I L+ + NFFE RV EYQ+   +
Sbjct: 295 -ELISLQGKTNFFEKRVGEYQKSGVM 319


>gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
 gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
          Length = 403

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 36/345 (10%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P  A   +    D+ +L                 W+ Y  A  + W   E+ +  DL  
Sbjct: 60  KPAVAPTIKAFEMDEPILQENPQRF---------VWQMYKKAEASFWTAEEIDLSKDLHD 110

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N LTDDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +H
Sbjct: 111 WN--NKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENIH 168

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +    FN    +P I  KA+WAL++                 + 
Sbjct: 169 SETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKKS 215

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 + + V EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 216 TFATRLIAFAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSL 275

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                  L  +  ++  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R  
Sbjct: 276 -------LNNRPNKEVVKEIVVDAVKIEQEFLTEALPCALLGMNANLMKQYIEFVADRLL 328

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G E +++ T NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 329 VALGNEKVYRAT-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 371


>gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica]
          Length = 382

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              +   + +L   +    + P++Y   W  Y  A  + W   EV +  D+  WK    L
Sbjct: 51  ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 107

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +
Sbjct: 108 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 167

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +L  D  E    FN    +P+I  KA+WAL++                         +
Sbjct: 168 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWI--------------GADAPYSVRVI 213

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +         H
Sbjct: 214 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYK-------H 266

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +  K  Q++   ++ +A  +E  +  + +P   +G+N    + Y++F+A+R   ++    
Sbjct: 267 MVQKPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 326

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++K  ENPF +M E+I L+ + NFFE +V+EY +   +
Sbjct: 327 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 362


>gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos
           saltator]
          Length = 344

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72
           ++  N D + +L    +   + P++Y   W+ Y  A  + W   EVP+   D   W+   
Sbjct: 10  KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEE-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  DER  I   L FFA+S+ +V  N++    + +   E R +   Q   E +HS  + 
Sbjct: 68  KLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127

Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E    FN    +P +T KANWAL +                +     + 
Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWINH-------------ESATFPER 174

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +        
Sbjct: 175 IVAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFK------ 228

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            H+  K   ++ +T++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G 
Sbjct: 229 -HVIQKPSFERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGF 287

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + ++  +ENPF +M   I L+ + NFFE +V EY++   ++
Sbjct: 288 DKVYN-SENPFSFMD-FISLEGKTNFFEKKVGEYKKFGVME 326


>gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
 gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
          Length = 325

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y     + W   E+ +  DL  W   N L DDER  
Sbjct: 5   EPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWN--NKLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    FN     P+I  K  WAL++ ++               +   +  + +   EG
Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ + ++ +A  +E  +  E++P   +G+NA    QY++F+A+R   ++G E ++  + N
Sbjct: 222 ERIKEIIVDALDIERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVMNTD 313


>gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 394

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 27/338 (7%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L      + + P+KY   W+ Y  +  + W   E+ +  DL  W   N + 
Sbjct: 65  KQEESNEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMN 122

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLI 182

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA+WA+++ Q+             +     +  V 
Sbjct: 183 ETYFKDPEEADFLFNAIDNIPFIRKKADWAIRWIQS-------------EDALYAERLVA 229

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE +H ++   + + +K      
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK------ 283

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K   +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R     G +  
Sbjct: 284 -NKPSSEIIEKIITEAVDIEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  T NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378


>gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 323

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   W+ Y  A  + W   E+ +  DL  W     L +DE+  
Sbjct: 5   EPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDW--DRKLNNDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKD 122

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                 LF     +P I+ KA+WAL++                 Q    +  V +   EG
Sbjct: 123 PTDKNRLFKALETIPCISNKADWALRWI---------------SQGSFSERLVAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G++   + I RDE LH +F   + +Q+  + P        
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLPL------- 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  + ++  A  +E  +  + +P   +G+NA    QY++F+A+R    +G   L+    N
Sbjct: 221 ETLQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYNVD-N 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I +  + NFFE RV+EYQ+   + 
Sbjct: 280 PFDFMD-LISMPGKTNFFERRVSEYQKSGVMS 310


>gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb18]
          Length = 325

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 27/313 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   EV +  DL  W   N L DDER  I   L FFA+S+ +V  N
Sbjct: 9   KQIWQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156
           +V      +  PE R +   Q   E +HS T+  +I +   +  +    F+    +P I 
Sbjct: 67  LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            KA+WA+++              +  +       V +   EG++F   FA I  L +   
Sbjct: 127 KKADWAIRWI-------------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGL 173

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   + +       HL  +   +  + ++ EA  +E  + 
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFL 226

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            + +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M   I L  + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFF 284

Query: 337 ETRVTEYQQGAEL 349
           E RV +YQ+   +
Sbjct: 285 EKRVGDYQKAGVM 297


>gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
 gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
          Length = 349

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        L P+K+   WE Y +   + W   E+ +  D+  W   N L D ER  
Sbjct: 8   EPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+ +     +   E + +   Q   E +HS T+  +I +   D
Sbjct: 65  ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKD 124

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E     N    +P +  KA WAL++                D     +  + + V EG
Sbjct: 125 PVEKDRLLNAIDTIPCVQKKAEWALRWI---------------DNGSFAERLIAFAVVEG 169

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +         H+  K  +
Sbjct: 170 IFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACMLY------TDHIVNKLPE 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++  A  +E  +  + +P   +G+NA   +QY+ F+A+     +GL  ++    N
Sbjct: 224 SQIYDIIRNAVEIEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYNVA-N 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+G  + 
Sbjct: 283 PFDFMD-MISLQGKTNFFEKRVGEYQRGEVMS 313


>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
          Length = 419

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 95  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 152

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 259

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 260 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 312

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 313 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 371

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 372 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 403


>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
 gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
          Length = 338

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 28/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+KY   W  Y  A  +HW+  E+ + +D   W+    LTD+ER  
Sbjct: 12  EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEY--KLTDNERHF 69

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D
Sbjct: 70  ISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKD 129

Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
              + +LFN    +P I  KA WAL++                D +   +  V +   EG
Sbjct: 130 KQTKDKLFNAIETIPCIKKKAEWALRWIN--------------DSDSFAERLVAFAAVEG 175

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +  +++        K   
Sbjct: 176 IFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQR-------KLDP 228

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    M+ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + +F  + N
Sbjct: 229 KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFN-SSN 287

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF WM E+I L+++ NFFE +V EY +   
Sbjct: 288 PFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316


>gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 343

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 27/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A +  ++  ++ +L        L P++Y   W  Y  A  + W   EV +  D+  W+ 
Sbjct: 6   AANQIEMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWE- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L+  E+  IK  L FFA+S+ +V  N++    + +   E R +   Q   E VHS  
Sbjct: 65  --RLSSGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEM 122

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +  E    FN    +P++  KA+WA  +               +      
Sbjct: 123 YSVLIDTYIRERAERERLFNAIETIPAVKRKADWAFNWI-------------TSTTATFG 169

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + + V EG++F   FA I  L +   M G+    + I RDE +H +F + +  +   
Sbjct: 170 ERLLAFAVVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRY-- 227

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  +  +++   ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +
Sbjct: 228 ----LVNRPSEERVGEIVREAVTIEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDL 283

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G++ ++  T+NPF +M  +I L  + NFFE RV +YQ+
Sbjct: 284 GMKRIYN-TKNPFDFMD-MISLDGKTNFFEKRVGDYQR 319


>gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
 gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
          Length = 325

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y     + W   E+ +  DL  W +   LT+DE+  
Sbjct: 5   EPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNT--KLTEDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F      P+I  KA+WAL++                D +   +  + +   EG
Sbjct: 123 DVEKDRLFKAIEVFPAIKKKADWALRWI---------------DSDSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K   
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPP 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++GLE  F  T N
Sbjct: 222 ARIKEILLDALTIEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+   L 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVLN 311


>gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV]
 gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV]
          Length = 338

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 29/346 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L+P   GEK  +   + +L        + P++Y   W  Y  A  + W   EV +  D  
Sbjct: 6   LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    L D+ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E V
Sbjct: 65  DWE---RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121

Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +      E     N    +P +  KA WAL++  +              +
Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAS-------------KE 168

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +  
Sbjct: 169 ATFGERLVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 228

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                  HL  +    + R ++ +A  +E  +  E +P   +GLN  +  QY++F+A+R 
Sbjct: 229 -------HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRL 281

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              +     +  T NP  +M+ +I L+ + NFFE +V EYQ+   +
Sbjct: 282 LVDLIGTKHYN-TANPLDFMT-LISLEGKTNFFEKKVGEYQKFGVM 325


>gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
 gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
          Length = 325

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 27/313 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N
Sbjct: 9   KQIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156
           +V      +  PE R +   Q   E +HS T+  +I +   +  +    F+    +P I 
Sbjct: 67  LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            KA+WA+++              +  +       V +   EG++F   FA I  L +   
Sbjct: 127 KKADWAIRWI-------------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGL 173

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   + +       HL  +   +  + ++ EA  +E  + 
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFL 226

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            + +P   +G+NA    QY++F+A+R    +G + ++  T NPF +M   I L  + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFF 284

Query: 337 ETRVTEYQQGAEL 349
           E RV +YQ+   +
Sbjct: 285 EKRVGDYQKAGVM 297


>gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A +N W    + + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+ + +V  N V      +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     +  R +P I  KA WA+++                 Q       V +   E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +         ++  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 392

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        + P++Y   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 61  KKEDEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHDW--DNKL 118

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +   E R     Q   E +HS T+  +
Sbjct: 119 NKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIHSETYSLL 178

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   D  E    F+    + SI AKA WAL++              +  +       V
Sbjct: 179 LDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWI-------------EDPESIYAVRLV 225

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE +H +F   + +       H
Sbjct: 226 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFS-------H 278

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  +  ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G E 
Sbjct: 279 LKHRPGKKVVERIIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLLLSLGNEK 338

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +  T NPF +M E I L  + NFFE +V++YQ    +
Sbjct: 339 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVM 374


>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
 gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
          Length = 356

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ MI R + FFA+ +
Sbjct: 36  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATGD 92

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 93  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 152

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++  ++        T    + FL +L  F    EG++FY  FA +  
Sbjct: 153 EIPSIREKAQFCFKWMDSVEKIERLE-TAADRRRFLLNLICFAACIEGLFFYGAFAYVYW 211

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 212 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 271

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 272 AELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQGVQ 329

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 330 ELTNFFERRPSAYQVAVEGTVD 351


>gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
 gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
          Length = 326

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y  +  + W   E+ +  DL  W +   L DDER  
Sbjct: 6   EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTT--KLNDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F      P+I  KA+WALQ+ ++                   +  + +   EG
Sbjct: 124 EAEKDKLFKAIENFPAIKKKADWALQWIES---------------PSFAERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 169 IFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFAVHL------HNNHLVNKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G E  +  + N
Sbjct: 223 ERIRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV+EYQ+   L 
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312


>gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 409

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 31/328 (9%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y     + W   E+ +  DL  W  +  L D+ER  I   L FFA
Sbjct: 93  RFSLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFA 150

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
            ++ +V  N+     R ++ PE R +   Q   E +H  T+  +I S   D  +    F 
Sbjct: 151 GADGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFA 210

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            + +VPS+  KA WA +Y                      +  V +   EG++F   F  
Sbjct: 211 AHTKVPSVEKKARWAQRYI--------------GSDASFAERLVAFAAVEGIFFSGAFCS 256

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  L +   M G+    + I RDE LH +F   + ++       L  K  +     ++ E
Sbjct: 257 IFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSK-------LERKLSETDMHKLIGE 309

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P G +G+NA    QY++F+A+R  H +G   L+  ++NPF WM  +I
Sbjct: 310 AVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWMD-MI 367

Query: 328 DLKKEKNFFETRVTEYQQGA---ELKWD 352
            L+ + NFFE RV EYQ+      L  D
Sbjct: 368 SLEGKTNFFEKRVGEYQKSGVMASLSDD 395


>gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 346

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+K+   WE Y  A  + W   EV +  D   W +   L D+E+  
Sbjct: 27  EPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHF 83

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D
Sbjct: 84  ISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 143

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                +LF     VP++  KA+WAL++                      +  V +   EG
Sbjct: 144 PKKKSDLFRAIHTVPTVAKKADWALKWI--------------GSDASFAERLVGFACVEG 189

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + +        L     +
Sbjct: 190 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSM-------LENPLSE 242

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G+  L+    N
Sbjct: 243 KVLHQLVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-N 301

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM E+I L+ + NFFE RV +YQ+   +
Sbjct: 302 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 331


>gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 400

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +Q  E +    ++ +L A  +   L P++Y   +E Y  A  + W   E+ +  DL  W 
Sbjct: 63  VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N + ++ER  I R L FFA+S+ +V  N+           E + +   Q   E +HS 
Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   D  E    FN    +P I  KA WAL++                 +   
Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIND-------------SEALF 227

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + IK
Sbjct: 228 AERLVAFAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   K        ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    
Sbjct: 288 -------NKPDPAIVEKIVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLVA 340

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            G E +FK  ENPF +M E I L  + NFFE RV++YQ+ + +
Sbjct: 341 FGNEKVFKV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 381


>gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 325

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y S   + W   E+ +  DL  W   N L++DER  
Sbjct: 5   EPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWN--NKLSNDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E    ELFN     P+I  KA+WALQ+ ++               +   +  + +   EG
Sbjct: 123 EVEKDELFNALEVFPAIKKKADWALQWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R+++ +A  +E  +  E++P   +G+NA    QY++F+A+R   ++G +  +  T N
Sbjct: 222 ERIRSIIVDALNIEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE +V EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKKVAEYQKAGVMNTD 313


>gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
 gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
          Length = 320

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  
Sbjct: 2   EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFASS+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  +  KA+WA ++               +  +   +  V +   EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  + +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSK 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +   +++ +A  +E  +    +P   +G+N     QY++F+A+R   ++G E +F    N
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFNVY-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+     
Sbjct: 277 PFSFM-EYISLEGKTNFFERRVSEYQKMGVFT 307


>gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit
           [Bacteriovorax marinus SJ]
          Length = 322

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 27/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L    D   L PLKY   +E Y +     W   E+    D+  W+    L  DE+  I
Sbjct: 3   PILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWE---KLNKDEQHFI 59

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+ L  Y  +  PE R +   Q   E +HS T+  +I +   D 
Sbjct: 60  KHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDP 119

Query: 143 ---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
               ELF+     P +  KA+WA+++ Q+              +    +  + +   EG+
Sbjct: 120 KEKDELFHAVTHFPFVEKKADWAMKWMQS--------------KRSFAERLIAFAAIEGI 165

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   M G+    ++I RDE LH  F   +   +  E      +  ++
Sbjct: 166 FFSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHIHELLTPEE-----QLNKE 220

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               ++ EA  +E  +  E +P   +G+NA    +Y++F+A+   +++G E  +  TENP
Sbjct: 221 TITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TENP 279

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV+EYQ+   L  
Sbjct: 280 FDWM-ELISLEGKTNFFEKRVSEYQKPGVLGD 310


>gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 333

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/337 (41%), Positives = 192/337 (56%), Gaps = 5/337 (1%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            VN  DKR++N ++D+NQLLP +Y WAW+ +L A  NHW P E+ M  D+  +   + LT
Sbjct: 2   PVNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYN--HTLT 59

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER +    L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ I
Sbjct: 60  TNERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCI 119

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGL++ E++N YR VP I  K   + +  + +         KD   EF+     F  +
Sbjct: 120 ESLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAI 179

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           FEG WFY GF+ I SL R   M G AEQ+QYI+RDE LH  FGI VI  +  E       
Sbjct: 180 FEGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDP 239

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 R +  E    EIAYA+  + +  +G NA       +FIANRR  Q+G++  F  
Sbjct: 240 ---TAVRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +N  PW+ E  +L+KEKNFFETRVTEYQ G  LKWD
Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333


>gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus]
 gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus]
 gi|301134541|gb|ADK63655.1| M015L [Myxoma virus]
          Length = 322

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E    F     +  I  KA W  ++             ++ D  + + L  F   
Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K         
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLKHT------- 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           T NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309


>gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
 gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
          Length = 325

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y       W   E+ +  DL  W   N L DDE+  
Sbjct: 5   EPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWN--NKLNDDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +  PE + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+     P+I  KA WAL++ ++               +   +  + +   EG
Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + +       H+  K  +
Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHSH------HIVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G + ++  + N
Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKAGVMNSD 313


>gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
           BCW-1]
          Length = 340

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 178/324 (54%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        TKD  + FL +L  F    EG++FY  FA +  
Sbjct: 137 NIPSIREKAEFCFRWIDSVDKIDRLE-TKDERRRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF   V++ ++ E P L+  E QQ+   ML EA  
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLREAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +   +G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ +++
Sbjct: 256 AELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQNVQ 313

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE R + YQ      + +D
Sbjct: 314 ELTNFFERRASAYQVAVEGSVSFD 337


>gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
 gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
          Length = 323

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 28/331 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L    +   + P+++   WE Y       W   E+ +  DL  W +   LTDDER 
Sbjct: 4   QEPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTT--KLTDDERY 61

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   
Sbjct: 62  FIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVK 121

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    F      P+I  KA+WAL++ ++               E   +  + +   E
Sbjct: 122 DEVEKDRLFRAIEVFPAIKKKADWALKWIES---------------ESFAERLIAFAAVE 166

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   + G+    + I RDE +H +F + +       N H+  +  
Sbjct: 167 GIFFSGAFCSIFWLKKRGLLPGLTFSNELISRDEGMHCDFAVHL------HNNHIVNRVP 220

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   + G E ++  T 
Sbjct: 221 KDRIKEIIVDALDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT- 279

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NPF +M E+I L+ + NFFE RV+EYQ+   
Sbjct: 280 NPFDFM-EMISLEGKTNFFEKRVSEYQKAGV 309


>gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens]
          Length = 319

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 27/326 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML   S    L P+++   W+ Y  A  + W   EV +  D+  W +   L D ER  IK
Sbjct: 1   MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDT--KLNDKERHFIK 58

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  +I +   D  
Sbjct: 59  HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E       +P +  KA WAL++              D D     +  + +   EG++
Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRWC-------------DPDHASFTERLLAFAAVEGIF 165

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G++   + I RDE LH +F   + ++++ +   +       +
Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLRKKLSDV-------Q 218

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +++  A  +E ++    +P   +G+N+ S  +Y++F A+R   ++G   L+  T NPF
Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM E+I L+ + NFFE RV EY + 
Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302


>gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
          Length = 347

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM    + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+   E       W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 337

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 151/334 (45%), Gaps = 28/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        + P+KY   W  Y +A  + W   E+ +  D A W+    LTD ER
Sbjct: 16  SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 72

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  +I +  
Sbjct: 73  FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 132

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+   +   I  KA+WAL++    +SP                  + +   
Sbjct: 133 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP-------------FPVRLIAFAAV 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   FA I  L +   M G+    + I RDE LH +F   +   IK        K 
Sbjct: 180 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKP 232

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ EA  LE  Y  E +P   +G+N     QY++++A+    ++G   ++  +
Sbjct: 233 SQEQVYEIIKEAVSLEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLLTELGYPKVYNAS 292

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E + ++ + NFFE RV+EYQ+   L 
Sbjct: 293 -NPFDFM-ENLSIEAKTNFFERRVSEYQRAGVLS 324


>gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 347

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+   E       W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
 gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
          Length = 327

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y  +  + W   E+ +  DL  W S   LTDDER  
Sbjct: 6   EPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSS--KLTDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    FN     P+I  KA WAL++ ++                   +  + +   EG
Sbjct: 124 EKEKAMLFNAIETFPAIKKKAEWALKWIES---------------PSFAERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +         HL  K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HEHHLINKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R +L +A  +E  +  E++P   +G+N+    QY++F+ +     +G E  +  T N
Sbjct: 223 ERIREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TAN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV+EYQ+   L 
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312


>gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
 gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
          Length = 394

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 27/338 (7%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L      + + P+KY   W+ Y  +  + W   E+ +  DLA W   N + 
Sbjct: 65  KQEESNEPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMN 122

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLI 182

Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E    FN    +P I  KA+WA+++ Q              +     +  V 
Sbjct: 183 ETYFKDPEEADFLFNAIENIPFIREKADWAIRWIQD-------------EDALYAERLVA 229

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE +H ++   + + +K      
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK------ 283

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K   +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R     G +  
Sbjct: 284 -NKPSPEIIEKIITEAVTIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  T NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378


>gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus]
 gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus]
          Length = 325

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++V  + +L   +    + P+ Y   W  Y  A  + W   EV +  D   W     L++
Sbjct: 1   MDVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDW---LKLSE 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I 
Sbjct: 58  NEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +  LD  E    FN    +  +  KANWA ++              ++      +  + +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWARKWI-------------ESKNSTYGERLIAF 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  + +   M G+    + I RDE LH +F   +         HL 
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACMMFK-------HLS 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +   R ++ EA  +E  +  E MP   +G+N    +QY++F+A+R   ++G +  +
Sbjct: 218 NPPLENVIRDIVIEAVDIEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
          Length = 399

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
 gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
           AltName: Full=Ribonucleotide reductase R2 subunit 1;
           AltName: Full=Ribonucleotide reductase small subunit 1
 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
           cerevisiae]
 gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
 gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 322

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 29/329 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K+   W+ Y  A  + W   E+ +  DL  W     LT+ E+  I 
Sbjct: 1   MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  ++ +   D  
Sbjct: 58  HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
               L      VP++  KA WAL++ Q+               E   +  + +   EG++
Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS--------------SECFAERLIAFACVEGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K            ++
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK-------HPLEPER 216

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G++ ++  T NPF
Sbjct: 217 LQEIVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            WM E I L+ + NFFE RV EYQ+   +
Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNGVM 303


>gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
 gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
          Length = 328

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++  ++ +L    D   + P+++   WE Y       W   E+ +  DL+ W   N L+D
Sbjct: 1   MSAAEEPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWN--NKLSD 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I 
Sbjct: 59  DEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   DE E    F      P+I  KA+WAL++ ++                   +  + +
Sbjct: 119 TYVKDEKEKNVLFQAIENFPAIKKKADWALKWIES---------------PSFAERLIAF 163

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE +H ++ + +       N HL 
Sbjct: 164 AAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNNHLV 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++  A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E ++
Sbjct: 218 NKVPKERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M  +I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 NST-NPFDFMD-MISLQGKTNFFEKRVSEYQKAGVMN 312


>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
 gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
 gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
          Length = 399

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q                    +  V +   E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD-------------ALFGERLVAFASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 347

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSTERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+   E       W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 399

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/333 (29%), Positives = 153/333 (45%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+S+V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q                    +  V +   E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD-------------ALFGERLVAFASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus]
 gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus
           6918VP60-T2]
          Length = 322

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++  E    F     +  I  KA W  ++             ++ D  + + L  F   
Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K         
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLKHT------- 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           T NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309


>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
          Length = 399

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
 gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
          Length = 355

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 101/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L++ E+ MI R + FFA+ +
Sbjct: 35  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGEQHMIGRLVAFFATGD 91

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 92  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 151

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 152 NIPSIREKAEFCFKWMDSVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 210

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  +V++ ++ E P L+ +  +Q+   ML EA  
Sbjct: 211 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDELLRQQVTDMLKEAVE 270

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 271 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 328

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 329 ELTNFFERRPSAYQVAVEGTVD 350


>gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
          Length = 326

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 158/332 (47%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   L P+ +   WE Y     + W   E+ +Q D+  WK+   L+ DE+  
Sbjct: 5   EPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKT--KLSKDEQYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F      P+I  KA+WALQ+ ++               +   +  + +   EG
Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  +  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNEHLVNQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+N+    QY++F+A+R   ++G +  +  T N
Sbjct: 222 ERIRAIIVDALTIEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVMN 311


>gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV]
 gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura
           NPV]
          Length = 333

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N+ D+ +L        + P++Y   W  Y  A  + W   EV +  DL+ W   + L + 
Sbjct: 8   NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDW---DSLKES 64

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +
Sbjct: 65  ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P+I  KA W++++ ++ +                 +  + + 
Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSAT-------------ATFAERLIAFA 171

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  + +   M G+    + I RDE LH +F   + +       H+  
Sbjct: 172 AVEGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFACLMYS-------HIVN 224

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  + +   ++ EA  +E  +  E +P   +G+N     +Y++F+A+R   ++  E  + 
Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            T+NPF +M+ +I L+ + NFFE +V+EYQ+   + 
Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQKYGVMS 318


>gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
 gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
          Length = 328

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 28/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   W+ Y     + W   E+ +  DL  WK  N L DDER  
Sbjct: 6   EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWK--NKLNDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+     P+I  KA+WAL++ ++                   +  + +   EG
Sbjct: 124 EKEKDILFHALENFPAIRKKADWALKWIES---------------PSFAERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++ + +       N HL  K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNHHLINKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  T N
Sbjct: 223 ERITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYNST-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF +M  +I L+ + NFFE RV EYQ+   
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVAEYQKSGV 310


>gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca
           mulatta]
          Length = 704

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 84/346 (24%), Positives = 137/346 (39%), Gaps = 58/346 (16%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +  +       V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 401 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 460

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 461 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 517

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    FN    +P +  KA+WAL++                 + 
Sbjct: 518 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 564

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE             
Sbjct: 565 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE------------- 611

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                                     L             +G+N    +QY++F+A+R  
Sbjct: 612 ------------------------VSLNQIIGXXXXXXXXIGMNCTLMKQYIEFVADRLM 647

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 648 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 691


>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
           T2Bo]
 gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
           [Babesia bovis]
          Length = 339

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 29/326 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N L P+KY   WE Y  A  + W   E+ +  DL  W +   LT+ E   IK  L
Sbjct: 26  EDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEHHFIKNVL 82

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145
            FFA+S+ +V  N+ L   + +  PE + +   Q   E +HS T+  +I     DE E  
Sbjct: 83  AFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYIRDEAEKD 142

Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
             F     + ++  KA WA ++                D++   +  V Y   EG++F  
Sbjct: 143 RLFRAIETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAVEGIFFSG 188

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            F  I  L +   M G+    + I RDE LH +FG  + +++K + P        +  + 
Sbjct: 189 SFCAIFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLP-------AECVQQ 241

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ EA  +E  +  +++P   +G+N+    QY++F+A+R    +G+ P++K T+NPF WM
Sbjct: 242 IIKEAVAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-TKNPFEWM 300

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL 349
            E+I ++ + NFFE RV EYQ+   L
Sbjct: 301 -ELISVQGKTNFFEKRVGEYQKSGIL 325


>gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           albus J1074]
 gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
 gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
          Length = 350

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 101/324 (31%), Positives = 177/324 (54%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 30  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATGD 86

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 87  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAVE 146

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  ++FL +L  F    EG++FY  FA +  
Sbjct: 147 NIPSIREKAEFCFRWMDSVDKLDQLESQADR-RKFLLNLICFAACIEGLFFYGAFAYVYW 205

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + Q++   ML EA  
Sbjct: 206 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKEAVE 265

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 266 AELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 323

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ      + +D
Sbjct: 324 ELTNFFERRVSAYQVAVEGTVSFD 347


>gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi]
 gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 28/326 (8%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
                 L PL Y   WE Y     + W   EV +  D+  W+    L  +E+  IK  L 
Sbjct: 25  NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWE---KLNSNEQHFIKTVLA 81

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL-- 145
           FFA+S+ +V  N+       +  PE R +   Q   E +H+  +  +I +L  D+ E   
Sbjct: 82  FFAASDGIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNR 141

Query: 146 -FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F+    VPS+  KANWAL++  +              +    +  + +   EG++F   
Sbjct: 142 LFHAIDTVPSVQKKANWALKWINS--------------ENLFAERLLAFACVEGIFFSGS 187

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F  I  L +   M G++   + I RDE LH +F   + + +K      +TK  QQ   ++
Sbjct: 188 FCSIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSL 241

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           ++EA  +E  +  E++P   +G+N+   +QY++ +A+R    IG E ++  + NPF WM+
Sbjct: 242 VYEAVEIEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
            +I +  + NFFE +V EY +   + 
Sbjct: 301 -IISVSGKTNFFEKKVGEYAKANIMS 325


>gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
          Length = 392

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 23/347 (6%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T    + + + +    ++ +L A      +LP+++   WE Y     + W   E+ +  D
Sbjct: 57  TPEQKLLSQQMKEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQD 116

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  W+S   L  +E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E
Sbjct: 117 MTHWES---LNSNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGFQIAME 173

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
            +HS T+  +I     DE E   ++  V ++ A A  A      +++           + 
Sbjct: 174 NIHSETYSLLIDQYIRDEKEKMELFDAVHNVKAVAVKAAWAAMWINN-----------RN 222

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG+ F   F  I  L +   M G+    + I RDE LH +F   + +Q
Sbjct: 223 CFAERLVGFACVEGILFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQ 282

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K + P        +  + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R  
Sbjct: 283 LKNKLPD-------KVVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLL 335

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             +G+  +F  T NPF WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 336 TSLGVPKIFFAT-NPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 380


>gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing
           bacterium SS3/4]
          Length = 346

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E  ++V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 6   KPLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 66  DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D   L
Sbjct: 122 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T    Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 236 KEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 295

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+   E       W+S+  D    + +FFE R T Y +   L  D
Sbjct: 296 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 345


>gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus]
 gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus]
          Length = 325

 Score =  305 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N   + +L    +   + P+ Y   W+ Y  A  + W   EV +  D + W     L+D
Sbjct: 1   MNTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I 
Sbjct: 58  NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +  LD  E    FN    +  +  KANWA ++              ++      +  V +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWI-------------ESKNRTYGERLVAF 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  + +   M G+    + I RDE LH +F   +         HL 
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFK-------HLL 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   R ++ EA  +E  +  E +P   +G+N    +QY++F+A+R   ++G +  +
Sbjct: 218 NPPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 339

 Score =  305 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVPD---LAKLSPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 136 NIPSIREKAQFCFRWMDSVEKLDQLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ ++ +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 255 AELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQGVQ 312

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 313 ELTNFFERRPSAYQVAVEGSVD 334


>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           avermitilis MA-4680]
 gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces avermitilis MA-4680]
          Length = 338

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 105/322 (32%), Positives = 173/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHLIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 75  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++   +        TK   + FL +L  F    EG++FY  FA +  
Sbjct: 135 NIPSIREKAEFCFKWINEVEKLDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  +V++ ++ E P L+  E QQ+   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLREAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQGVQ 311

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 312 ELTNFFERRASAYQVAVEGTVD 333


>gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
 gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
          Length = 328

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 28/339 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++ + + +L    D   + P+K+   WE Y       W   E+ + +DL  W   N L +
Sbjct: 1   MSNNVEPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWN--NKLNE 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER  +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I 
Sbjct: 59  DERYFVKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLID 118

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   DE E    F      P+I  KA+WAL++ ++                   +  + +
Sbjct: 119 TYVKDEKEKNKLFKALENFPAIKEKADWALKWIES---------------PSFAERLIAF 163

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE +H ++ + +       N HL 
Sbjct: 164 AAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNHHLI 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  + + R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +
Sbjct: 218 NKVPKARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             + NPF +M  +I L+ + NFFE RV+EYQ+   L  D
Sbjct: 278 NVS-NPFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
 gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
          Length = 328

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 151/333 (45%), Gaps = 29/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+K+   WE Y  A  + W   E+ +  D   W S   L D ER  
Sbjct: 10  EPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHF 66

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+ +    ++   E + +   Q   E +H+ T+  +I +   D
Sbjct: 67  ISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKD 126

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   + N    +P +  KA+WA+++ +               Q    +  + +   EG
Sbjct: 127 TTERQRMLNAIETIPCVKKKADWAIRWIE---------------QGTFIERLIAFAAVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  +
Sbjct: 172 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYTKY------IVNKLPE 225

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++  T++ +A  +E  +  + +P   +G+NAP   QY++F+A+     + L+ ++  T N
Sbjct: 226 EQVYTIIKDAVEIEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-N 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M  +I L+ + NFFE RV EYQ+      
Sbjct: 285 PFDFMD-LISLQGKTNFFEKRVGEYQKAGVTAD 316


>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 341

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 175/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 21  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 77

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 78  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 137

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 138 NIPSIREKASFCFKWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 196

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML EA  
Sbjct: 197 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLREAVE 256

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 314

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 315 ELTNFFERRPSAYQVAVEGTVD 336


>gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40]
 gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 368

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 139/348 (39%), Positives = 197/348 (56%), Gaps = 6/348 (1%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            G +     +  V   DKR++N  +D+NQL P KY WAW+ +++A  NHW P ++ M  D
Sbjct: 27  AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +K  + LT+ ER M +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EE
Sbjct: 87  VYDYK--HNLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +  +++          D    
Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F+     F  VFEG WFY GF+ I +L R   M G AEQ QYIMRDE++H  FGI  ++Q
Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I IEN    T       +TM  EA   E  YA   + +  +G +A    +  +FIANRR 
Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GLE  F   +   PW+ E  +++KEKNFFETRV EYQ    L+WD
Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQ-AGGLEWD 368


>gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276]
 gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus
           gattii WM276]
          Length = 430

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 31/349 (8%)

Query: 4   NTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           N G  P    +  +     +++ +L        L P+KY   W+ Y  A  + W   E+ 
Sbjct: 79  NKGRKPAGKDKMPMKFLEEEEEDILRESDSRFVLFPIKYNEIWQAYKRAQASFWTAEELD 138

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
              DL  W  +  +T+ ER  I R L FFA+S+ +V  NIV      +   E R +   Q
Sbjct: 139 FGHDLIDWHDR--MTEQERFFILRILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           +  E VHS T+  +I +   D  E    F     +P I  KA+WAL+Y            
Sbjct: 197 SMIEQVHSETYSLLIETYVRDAQEKDFLFRGMENIPCIKQKADWALKYI----------- 245

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               D+   +   V +   EG++F   FA I  L +   M G+    + I RDE +H +F
Sbjct: 246 ---TDELPFRTRLVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDF 302

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + N +K             +   ++ EA ++E  +  + +P   +G+NA    QYM+
Sbjct: 303 ACLLYNHLKHRCST-------DEVHRIVSEALVIEKQFLTDALPCALIGINAHLMCQYME 355

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           F+A+R    +G   ++  T NPF WM E+I L+ + NFFE+RV+ YQ+ 
Sbjct: 356 FVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQGKANFFESRVSAYQKA 402


>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
 gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
          Length = 338

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 173/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++   +          D  + FL +L  F    EG++FY  FA +  
Sbjct: 135 EIPSIREKAQFCFKWINEVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVD 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 254 AELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAPVYG-SQNPFSFM-ELQGVQ 311

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 312 ELTNFFERRPSAYQVAVEGTVD 333


>gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 320

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+    +P++  KA WA ++                D     +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P        
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------- 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++N
Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 277 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 306


>gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii VEG]
          Length = 391

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L A      +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  I
Sbjct: 74  PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I     DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190

Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E    F+    V ++  KA WA  +                ++    +  V +   EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN--------------NRNCFAERLVGFACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            F   F  I  L +   M G+    + I RDE LH +F   + +Q+K + P        +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R    +G+  +F  T NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIFFAT-NP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379


>gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii GT1]
          Length = 391

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L A      +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  I
Sbjct: 74  PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I     DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190

Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E    F+    V ++  KA WA  +                ++    +  V +   EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN--------------NRNCFAERLVGFACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            F   F  I  L +   M G+    + I RDE LH +F   + +Q+K + P        +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R    +G+  +F  T NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIFFAT-NP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379


>gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus]
 gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus]
          Length = 322

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W+ Y  A  + W P EV +  DL  W     LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWH---ILTSDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E    F     +  I  KA W  ++             ++ D  + + L  F   
Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +         HL   
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFK-------HLNHT 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + ++  ++ EA ++E  +  + +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           T NPF +M E I L+ + NFFE RV++YQ+     
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVAS 310


>gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus]
 gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus]
 gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus]
          Length = 325

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 153/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N   + +L    +   + P+ Y   W+ Y  A  + W   EV +  D + W     L+D
Sbjct: 1   MNTPCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I 
Sbjct: 58  NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +  LD  E    FN    +  +  KANWA ++              ++      +  V +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWI-------------ESKNRTYGERLVAF 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  + +   M G+    + I RDE LH +F   +         HL 
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFK-------HLL 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   R ++ EA  +E  +  E +P   +G+N    +QY++F+A+R   ++G    +
Sbjct: 218 NPPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 338

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 106/339 (31%), Positives = 179/339 (52%), Gaps = 9/339 (2%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++ +D++ L        L P++Y   +E+Y  A  N W   EV +  D+A       LT 
Sbjct: 1   MSTNDEKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTP 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ 
Sbjct: 58  GEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLD 117

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  +    F     +PSI  KA +  ++  ++          D  + FL +L  F 
Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKIDRLETQADR-RRFLLNLICFA 176

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+
Sbjct: 177 ACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELF 236

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +Q+   ML EA   E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++
Sbjct: 237 DDALRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVY 296

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 297 G-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333


>gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum
           PN500]
          Length = 323

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 149/333 (44%), Gaps = 28/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L    D   L P+K+   W+ Y  A  + W   E+ +  DL  W+    L D+E
Sbjct: 2   MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQD--KLNDNE 59

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I + 
Sbjct: 60  RYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTY 119

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E    FN    +P +  KANWAL++               ++     +  V +  
Sbjct: 120 IQNPAEKTKLFNAIETIPCVQKKANWALKWI--------------SNSTSFAERLVAFAA 165

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L + N M G+    ++I RDE LH  F   + ++       L  K
Sbjct: 166 VEGIFFSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSK-------LVNK 218

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +   +++ +A   E  +  +++P   +G+N     +Y++F+A+     +G + ++  
Sbjct: 219 LDAKTIESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN- 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           T NPF WM E+I +    NFFE R T Y     
Sbjct: 278 TANPFDWM-ELISIDTRTNFFEHRNTSYTIPGV 309


>gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
           ATCC 33331]
          Length = 338

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA +  
Sbjct: 135 EIPSIREKAQFCFRWMDSVEKIERLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E +Q+   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELRQQVTDMLKEAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  QY++ +A++R  ++G   L+  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGVQ 311

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331


>gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
 gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
          Length = 328

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y       W   E+ +  DL  W +   L DDE+  
Sbjct: 6   EPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNT--KLNDDEKYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F      P+I  KA+WAL++ ++                   +  + +   EG
Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKWIES---------------PSFAERLIAFAAVEG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++ + +         H+  K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HKNHIVNKVTK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  + N
Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV+EYQ+   L  D
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 340

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLSPAEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++   +          D  + FL +L  F    EG++FY  FA +  
Sbjct: 137 NIPSIREKAEFCFRWINEVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+    QQ+   ML EA  
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAEAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 313

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 314 ELTNFFERRPSAYQVAVEGTVD 335


>gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 338

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 175/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA +  
Sbjct: 135 EIPSIREKAQFCFKWMDSVEKIERLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E QQ+   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELQQQVTDMLKEAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  QY++ +A++R  ++G   ++  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-SENPFSFM-ELQGVQ 311

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331


>gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC
           2396]
 gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC
           2396]
          Length = 405

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 135/345 (39%), Positives = 193/345 (55%), Gaps = 7/345 (2%)

Query: 9   PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           P +  +K   VN DDKR++N  +D+NQL P KY WAWE +L+A  NHW P ++ M  D+ 
Sbjct: 66  PEEVPQKLDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVY 125

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   + LT +E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EE++
Sbjct: 126 DYH--HKLTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESL 183

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+ T+Q+ I ++GLD+ E++N YR  P+I  K     +    L  P      +D  + F+
Sbjct: 184 HTWTYQHCIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFV 243

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                F  +FEG WFY GF+ I +L R   M G  EQ QYIMRDE +H  FGI V+ QI 
Sbjct: 244 MAYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQII 303

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E          +  +T+  EA   E  YAH  + +  +G  A    +  +FIANRR  Q
Sbjct: 304 KEEGVTLDP---KAIKTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQ 360

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           + L+  F    N  PW+ E   ++KEKNFFETRVTEYQ GA L+W
Sbjct: 361 LKLDEPFPGAGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405


>gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
          Length = 349

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 159/332 (47%), Gaps = 29/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L ++E+ 
Sbjct: 30  NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    F+    +P++  KA WA ++                D     +  V     E
Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------ 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++
Sbjct: 247 -QIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 305 NPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 360

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 41/351 (11%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + +   +S  +  E    +  +  L A  +   L P++    W+ Y  A  + W   E+ 
Sbjct: 33  LKDELEMSEYKRKELSGELQPEPYLVANPNRFVLFPIQEHDVWQMYKKAEASFWTAEELD 92

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W     LTD+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 93  LVHDLNDWA---KLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQ 149

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E          +P +  K                   
Sbjct: 150 IAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKK------------------- 190

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                     +  + +   EG++F   F  +  L +   M G++   + I RDE +H +F
Sbjct: 191 -------HSNERLLAFAAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNEMISRDEGMHTDF 243

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +++  + P         +   ++ +A  +E  +  +++P   +G+N+    QY++
Sbjct: 244 ACLMYSKLVNKLPE-------SRVHEIIRDAVAIEHEFVCDSLPVELIGMNSALMCQYIE 296

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           F+A+R  + +G+  ++   +NPF WM  +I L+ + NFFE RV EY +   
Sbjct: 297 FVADRLLYSLGVSKIYNV-KNPFDWMD-MISLQGKTNFFEKRVGEYSKAGV 345


>gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 430

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 151/326 (46%), Gaps = 28/326 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L        L P+KY   W+ Y  A  + W   E+    DL  W  +  +T+ ER  I 
Sbjct: 102 ILRESESRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFIL 159

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  NIV      +   E R +   Q+  E VHS T+  +I +   D  
Sbjct: 160 RILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219

Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +P I  KA+WAL+Y                D+   +   V +   EG++
Sbjct: 220 EKDFLFRGMTNIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE +H +F   + N +K             +
Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLKHRCST-------DE 318

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA ++E  +  + +P   +G+NA    QYM+F+A+R    +G   ++  T NPF
Sbjct: 319 VHHIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM E+I L+ + NFFE+RV+ YQ+ 
Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKA 402


>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
          Length = 347

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 105/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  ER +I R + FFA+ +
Sbjct: 27  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPAERHLIGRLVAFFATGD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 84  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 143

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 144 NIPSIREKAEFCFRWMDSVERLDRLE-TRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 202

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+ +E  ++   ML EA  
Sbjct: 203 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLREAVE 262

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY+Q +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 263 AELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQGVQ 320

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 321 ELTNFFERRASAYQVAVEGS 340


>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
 gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
          Length = 349

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 159/332 (47%), Gaps = 29/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L ++E+ 
Sbjct: 30  NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKH 86

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 87  FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    F+    +P++  KA WA ++                D     +  V     E
Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P       
Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------ 246

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++
Sbjct: 247 -QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSK 304

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 305 NPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 341

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 175/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+ +E+ +I R + FFA+ +
Sbjct: 21  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPEEQHLIGRLVAFFATGD 77

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 78  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 137

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 138 NIPSIREKAEFCFRWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 196

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+ ++  Q+   ML EA  
Sbjct: 197 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLREAVE 256

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQGVQ 314

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 315 ELTNFFERRPSAYQVAVEGTVD 336


>gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 338

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 75  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA +  
Sbjct: 135 EIPSIREKAQFCFRWMDSVEKIDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDALQQQVTDMLKEAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  QY++ +A++R  ++G   ++  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-SENPFSFM-ELQGVQ 311

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331


>gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 339

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +   +  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 136 NIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML EA  
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAVE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 255 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 312

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 313 ELTNFFERRPSAYQVAVEGTVD 334


>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
 gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
          Length = 331

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 109/324 (33%), Positives = 180/324 (55%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  DL      + L+  ER ++ R + FFA+ +
Sbjct: 11  LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTD---LDRLSAAERHLVSRLVAFFATGD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE E    F    
Sbjct: 68  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  +L +      +++  + FL +L  F    EG++FY  FA +  
Sbjct: 128 NIPSIRRKAEFCFRWIDSLGNLQRLE-SREDRRAFLLNLICFAACIEGLFFYGAFAYVYF 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+ ++  Q+ R ML EA  
Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQVREMLAEAVE 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL       Y++ +A+RR  Q+GLEP++  T NP  +M E+ D++
Sbjct: 247 CETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPLGFM-ELQDVQ 304

Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352
           +  NFFE RV+ YQ   G  + +D
Sbjct: 305 ELSNFFERRVSAYQVAVGGSVSFD 328


>gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 353

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 160/357 (44%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +       P+   +   +V  +RM+   + ++N    LKY WA E Y  A NN W+P E+
Sbjct: 6   IKKPLPHKPLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEI 65

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  +     L+  ER    + L F    +S+   N+   +  +++  E    L  
Sbjct: 66  NLSQDIKDY---PNLSPAERKAYDKILSFLVFLDSIQTANLPC-VGEYITANEVNLCLNI 121

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+E VHS ++ Y++ ++   +  +  +Y        K +  L    T     +     
Sbjct: 122 QTFQECVHSQSYSYMLDTICSPDERMDILY------QWKTDEHLLKRNTFIGECYNEFQV 175

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D   L  + +   V EG++F++GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 176 KKDARTLVKVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFR 235

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I +++ E+P L+      + + +L EA   EI +A   +     GLN      Y++++
Sbjct: 236 NIIIELRKEHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYL 295

Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G  P++   E       W+S+  +    + +FFE R T Y +   L  D
Sbjct: 296 GNLRWKSLGYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTALIDD 352


>gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
 gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
          Length = 340

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 173/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+   
Sbjct: 77  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 137 EIPSIREKAQFCFKWMDSVEEIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLREAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  QY++ +A++R  ++G   L+  +ENPF +M E+  ++
Sbjct: 256 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGVQ 313

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 314 ELTNFFERRPSAYQVAVEGS 333


>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 340

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +   +  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 137 NIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML EA  
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 314 ELTNFFERRPSAYQVAVEGTVD 335


>gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 352

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 153/362 (42%), Gaps = 56/362 (15%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           + + +L        + P++Y   W+ Y  A  + W   EV +  DLA W   + L  +E+
Sbjct: 3   EGEPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHW---DSLKPEEK 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+V    + +  PE R +   Q   E+VHS  +  +I +  
Sbjct: 60  HFISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYI 119

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    FN    +P +  KA+WALQ+                      +  V +   
Sbjct: 120 RDLKEREHLFNAIYTMPCVKRKADWALQWIND-------------STSTFGERLVAFAAV 166

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH  F   + + +         K 
Sbjct: 167 EGIFFSGSFASIYWLKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVK-------KP 219

Query: 257 FQQKSRTMLHEATLLE----------------------------IAYAHETMPKGFVGLN 288
            + + + ++ +A  +E                              +  E +P   +G+N
Sbjct: 220 SEDRVKDIITKAVSIEQVGGSYRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMN 279

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
               +QY++F+A+R    +GL  ++   ENPF +M E I L+ + NFFE RV EYQ+   
Sbjct: 280 RCLMKQYIEFVADRLFADLGLAKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQRFGI 337

Query: 349 LK 350
           + 
Sbjct: 338 MS 339


>gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 296

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 28/311 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   E+ +  DL  W   + L+ +ER  +   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
              + + E R +   Q   E +HS T+  +I +   D  E     +    VP +  KA+W
Sbjct: 58  ATEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           ALQ+              DA+     +  V +   EG++F   F  I  L +   M G+ 
Sbjct: 118 ALQWC-------------DANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + ++++ + P         +   ++ +A  +E  +  + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLQNQLP-------VARIVEIITDAVTIEQEFVQDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+    +Y++F A+R    +G    +K   NPF WM E+I L+ + NFFE RV 
Sbjct: 218 VELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVG 275

Query: 342 EYQQGAELKWD 352
           EY +    + D
Sbjct: 276 EYAKSGVGEKD 286


>gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299]
 gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299]
          Length = 324

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 29/330 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K    W+ Y  A  + W   E+ +  D   W +   L D+E+  I 
Sbjct: 1   MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 58  HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            +  LF     VP++  KA WAL++ Q+               E   +  V +   EG++
Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K             +
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK-------HPLDPAR 216

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G+E ++  T NPF
Sbjct: 217 LQEIVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            WM E+I L+ + NFFE RV +YQ+   + 
Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKANVMT 304


>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
 gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
          Length = 339

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 174/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +   +  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 136 NIPSIREKAEFCFTWMDSVEKLDRLE-TRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML EA  
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLREAVE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 255 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 312

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 313 ELTNFFERRPSAYQVAVEGTVD 334


>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
 gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
          Length = 345

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 179/348 (51%), Gaps = 13/348 (3%)

Query: 12  AGEKRVNVDDKRMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
             E  +    KR  N         L P++Y   +E+Y +A  N W   EV +  D+A   
Sbjct: 1   MSEPTLPEQKKRHQNLLDPGFELTLRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVAD-- 58

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT  E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH  
Sbjct: 59  -LAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQ 117

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  ++ +   D  +    F     +PSI  KA +  ++   +          D  + FL
Sbjct: 118 FYLTLLDTYLPDPDDRADAFAAVENIPSIREKAEFCFKWIDEVEKIDRLESKADR-RRFL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +L  F    EG++FY  FA +        + G+A    ++ RDE++H++F  DV++ ++
Sbjct: 177 LNLICFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  E +Q+ + ML  A   E+ +A +    G  G+N  S  +Y+Q +A++R  +
Sbjct: 237 KEEPELFDAELEQEVKDMLDGAVNAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQR 296

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           +G  P++  + NPF +M E+  +++  NFFE R + YQ      + +D
Sbjct: 297 LGFAPVYG-SSNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVSFD 342


>gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens str. 13]
 gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens ATCC 13124]
 gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
 gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium
           perfringens str. 13]
 gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens ATCC 13124]
 gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
          Length = 344

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  
Sbjct: 7   PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT +E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVH
Sbjct: 67  YK---KLTKEEKTAYDKILSFLIFLDSIQTANL-GNINSYITASEVNLCLTIQAFQEAVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   E       R       K +  L          +    +D+  E   
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFI 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K 
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++TKE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   I
Sbjct: 237 EIPEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAI 296

Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           GLEPLF+ Y ENP PW+    D  + + +FFE + T Y +   L  D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343


>gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
 gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
          Length = 340

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 173/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ +
Sbjct: 20  LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTD---LAKLSPGEQHLIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 77  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        TK   + FL +L  F    EG++FY  FA +  
Sbjct: 137 NIPSIREKAEFCFRWMDSVEKIDRLE-TKQDRRRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F   V++ ++ E P L+  E +Q+   ML EA  
Sbjct: 196 LRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDELRQQVTDMLKEAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S ++Y+Q +A++R  ++G   +F  +ENPF +M E+ +++
Sbjct: 256 AELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVFG-SENPFSFM-ELQNVQ 313

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 314 ELTNFFERRASAYQVAVEGS 333


>gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum ATCC 824]
 gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum EA 2018]
          Length = 344

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 13/347 (3%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+           K+++N  + ++N    +KY W  + Y    NN W+P E+ +  DL  
Sbjct: 7   PLFNENGDTETSKKKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDLKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     LTD+ER    + L F    +S+   N+   I  +++  E    L  QAF+EAVH
Sbjct: 67  Y---GKLTDNERTAYDKILSFLIFLDSVQTANL-GNINDYITASEVNLCLTIQAFQEAVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   E       R       K +  L          +    ++   E   
Sbjct: 123 SQSYSYMLDTICSPEK------RNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDENFL 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   V EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++ 
Sbjct: 177 KAIMGNYVLEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQK 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++T+E +++ + M+      EI + H  +     G+N    E Y++++ NRR   I
Sbjct: 237 EEPDMFTEEIKKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLEAI 296

Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G EP+++ Y ENP  W+    D    + +FFE + T Y + + L  D
Sbjct: 297 GFEPIYEGYDENPALWVDIYADANSVKTDFFEAKSTAYAKASTLVDD 343


>gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           lividans TK24]
 gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
 gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
          Length = 343

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/342 (31%), Positives = 185/342 (54%), Gaps = 10/342 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V+   K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       
Sbjct: 4   ETPVHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+  E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  
Sbjct: 60  LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  +    F     +PSI  KA +  ++  ++ S      TK   + FL +L 
Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESIDRLE-TKADRRRFLLNLI 178

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +        + G+A    ++ RDE++H++F  DV++ ++ E P
Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  + +++   ML EA   E+ +A +    G  G+N  S  QY++ +A++R  ++G  
Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           P++  +ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338


>gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
 gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
          Length = 330

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +    + +L    D   + P+++   WE Y       W   E+ +Q D+  W+  N L  
Sbjct: 1   MQTTQEPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQ--NSLNS 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER  IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I 
Sbjct: 59  DERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D+ E    F      P+I  KA+WA+++ ++                   +  + +
Sbjct: 119 TYVKDDAEKDQLFRAIENFPAIKLKADWAMKWIES---------------PSFAERLIAF 163

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE +H +F + +       N HL 
Sbjct: 164 AAVEGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNHHLV 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  +P++
Sbjct: 218 NKVPKERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M  +I ++ + NFFE RV EYQ+   + 
Sbjct: 278 NVT-NPFDFMD-LIGMEGKTNFFEKRVGEYQKAGVMN 312


>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 340

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 175/320 (54%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 20  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 77  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  ++ S        D  + FL +L  F    EG++FY  FA +  
Sbjct: 137 NIPSIREKASFCFKWMDSVESIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E +Q+   ML EA  
Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAVE 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++  ++NPF +M E+  ++
Sbjct: 256 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE R + YQ   E  
Sbjct: 314 ELTNFFERRPSAYQVAVEGS 333


>gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
 gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
          Length = 326

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 28/327 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 25  DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 82

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 83  -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 141

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++                 +    
Sbjct: 142 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 188

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 189 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 245

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 246 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 301

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKN 334
           G   +F+  ENPF +M E I L+ + N
Sbjct: 302 GFSKVFQ-AENPFDFM-ENISLEGKTN 326


>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
 gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces coelicolor A3(2)]
 gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
          Length = 343

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 176/322 (54%), Gaps = 9/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ +
Sbjct: 23  LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPMEQHLIGRLVAFFATGD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 80  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 139

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++ S      TK   + FL +L  F    EG++FY  FA +  
Sbjct: 140 NIPSIREKAEFCFRWMDSVESIDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +++   ML EA  
Sbjct: 199 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLREAVE 258

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 259 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 316

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE R + YQ   E   D
Sbjct: 317 ELTNFFERRPSAYQVAVEGTVD 338


>gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
 gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
          Length = 364

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 118/328 (35%), Positives = 194/328 (59%), Gaps = 2/328 (0%)

Query: 23  RMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++  R  +   LLPL+YGWA+E Y +   NHW P +V M  D+  W+ +  L++ +R +
Sbjct: 30  RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++  +G+F+++E +V +NI+  +   ++  E +  L R A EE +H+ +  Y+I+SLG+D
Sbjct: 90  VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E   M+ ++P+I AK  +    +Q L           +     +++F+F    EG  F
Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRRD-LDMQDPRSVALLAKNIFLFGQCMEGTQF 208

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y  F  +LSL R  K+ GI   ++Y +RDES H+     ++ ++  ENP +WT EF+ + 
Sbjct: 209 YGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWTAEFRDEL 268

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           R ++ EA  LE  +  + +P   VGLNA    QY+ +IA+RR   +GLEPL    ENP P
Sbjct: 269 RELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKPGVENPLP 328

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           W++E++D++KE+NFFE RVTEYQ+ + L
Sbjct: 329 WLAELMDVRKEQNFFEGRVTEYQKASAL 356


>gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima]
          Length = 300

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+A W+S   L  +E+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+W
Sbjct: 58  SKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A+++                D     +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 AMRWIND-------------DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + +       HL  K  Q++   ++ EA  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N     QY++F+A+R   ++  + L+   ENPF +M E I L+ + NFFE RV 
Sbjct: 218 CRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQKMGVMS 284


>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
 gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
          Length = 344

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/344 (32%), Positives = 186/344 (54%), Gaps = 11/344 (3%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
                +D +  L        L P++Y   ++++  A  N W   EV +  DLA       
Sbjct: 4   TSEPRLDTRHTLLDPGMDLTLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLAD---LAR 60

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+  ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  
Sbjct: 61  LSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLN 120

Query: 134 IITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   DE E F  +     +PSI  KA +  ++  ++        T++  + FL +L 
Sbjct: 121 LLDTYVPDERERFAAFAAIENIPSIRRKAEFCFRWIDSIF-ELRELKTREDRRAFLLNLI 179

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ ++ E P
Sbjct: 180 CFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEEP 239

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  E  ++ R ML EA   E  +A + + +G  GL+     QY+Q +A+RR  Q+G+ 
Sbjct: 240 DLFDDELARQVREMLAEAVECEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGIA 299

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           PL+  + NPF +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 300 PLYG-SANPFAFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 341


>gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
 gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
          Length = 387

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W  Y  +  + W   E+ +  D   W+  N +  DER 
Sbjct: 63  NEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWE--NKMNKDERF 120

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I +   
Sbjct: 121 FISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFK 180

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +  I  KA+WA+++ Q              ++    +  V +   E
Sbjct: 181 DPKEADFLFNAIDNIKYIGEKADWAIRWIQD-------------EEALFAERLVAFAAIE 227

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE +H ++   + +        L  K  
Sbjct: 228 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSY-------LENKPD 280

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+N     QY+++ A+R     G +  +  T 
Sbjct: 281 PSIIEKIITEAVSIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT- 339

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 340 NPFDFM-ENISLAGKTNFFEKRVSDYQRAGVME 371


>gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 3 [Canis familiaris]
          Length = 338

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +    FN    +P +  KA+WAL++              +  +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +      
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               L  K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+        
Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVFQ------ 291

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                    ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 292 --------AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 324


>gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
 gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
          Length = 326

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y       W   E+ + +D   W   N L DDER  
Sbjct: 5   EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWN--NKLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F      P+I  KA+WAL++                D     +  + +   EG
Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKWI---------------DSPSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N H+  +  +
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNKHIINQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  T N
Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYNST-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I ++ + NFFE RV+EYQ+   L  D
Sbjct: 281 PFDFMD-MIGMEGKTNFFEKRVSEYQKAGVLNSD 313


>gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens SM101]
 gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens SM101]
          Length = 344

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  
Sbjct: 7   PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT +E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVH
Sbjct: 67  YK---KLTKEEKAAYDKILSFLIFLDSIQTANL-GNINSYITASEVNLCLTIQAFQEAVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   E       R       K +  L          +    +D+  E   
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFI 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K 
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++TKE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   I
Sbjct: 237 EIPEVFTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAI 296

Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           GLEPLF+ Y ENP PW+    D  + + +FFE + T Y +   L  D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343


>gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
 gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
          Length = 323

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +  + +L    D   + P+++G  W  Y  A  + W   EV +  DL  WK+   L  +E
Sbjct: 1   MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I + 
Sbjct: 58  RRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTY 117

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    F+  R +  +  K+ WAL++                D     +  V +  
Sbjct: 118 IDDNNEKKRLFSSMRTMDCVRKKSEWALKWIN--------------DSAPYGERLVAFAA 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +          L  K
Sbjct: 164 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFTNY------LSHK 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             Q +   ++  A  +E  +  E +    +G+N+ S  +Y++F+++R    +G    +  
Sbjct: 218 PSQDRVYEIIDSAVSVETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYNV 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV+ YQ+   + 
Sbjct: 278 -ENPFSFM-ENISLEGKANFFEKRVSNYQKMGVMS 310


>gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
 gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
          Length = 404

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 136/351 (38%), Positives = 194/351 (55%), Gaps = 5/351 (1%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +   T  + +  G   V  +DK+++N  +D+NQL P KY WAWE +L+A  NHW P ++ 
Sbjct: 59  IPEQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDIN 118

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+  +   + LT +ER +    L +  +S+ +   NI LA+   +S PE + Y  RQ
Sbjct: 119 MAQDVHDFH--HKLTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQ 176

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            +EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +   ++  P      +D
Sbjct: 177 VYEESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRD 236

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
               FL     F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +H +FG+ 
Sbjct: 237 ELHNFLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLR 296

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           V  QI  E      +   +  R M  E    E  YA   +    +G +A       +FIA
Sbjct: 297 VARQIMREEN---IQPDPKAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIA 353

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR +++ LE  F   EN  PW+ E  +++KEKNFFETRVTEYQ G  L W
Sbjct: 354 NRRANKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404


>gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens]
          Length = 393

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 148/322 (45%), Gaps = 27/322 (8%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
            S    L P+K    W  Y  A  + W   EV +  D   W+    L + ER  + R L 
Sbjct: 78  DSSRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLA 134

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           FFA+S+ +V  N+V    + ++ PE R +   Q   E VH   +  ++ +   D GE   
Sbjct: 135 FFAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREA 194

Query: 148 MYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           + R     P + AKA+WA+++T +             D  +   L  F  V EG++F   
Sbjct: 195 LTRAHDLMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGS 240

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F  I  L +   + G+    + I RDE LH +F   + +++         +    ++  +
Sbjct: 241 FCAIFWLRKRGILPGLGFANELISRDEGLHCDFACALYSRLPGHL-----RLSDAEATAI 295

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + EA   E+ +  + +P   VG+NA     Y++F+A+R    +G   ++    NPF +M 
Sbjct: 296 ISEAVDTEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLGHPKIYGAA-NPFDFM- 353

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
           E+I ++ + NFFE RV EYQ+ 
Sbjct: 354 ELISMQGKTNFFEKRVAEYQKA 375


>gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa]
 gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa]
          Length = 350

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 37/336 (11%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             R   + + +L    +   + P+K+   W+ Y  A  + W   EV +  D   W++   
Sbjct: 38  TSRCESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN--- 94

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS     
Sbjct: 95  LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEM--- 151

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
                      LFN   E   +  KA+WAL +   + +P               +  + +
Sbjct: 152 ---------SLLFNAIYEFEFVKKKADWALCWIADIKAP-------------YAERLIAF 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   IK       
Sbjct: 190 AAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYTYIK------- 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++ EA  +E  Y  E +P   +G+N     QY++++A+    ++    ++
Sbjct: 243 NKPSEERIYQIIREAVDIEKEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY 302

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            Y++NPF +M E I ++ + NFFE RV+EYQ+   L
Sbjct: 303 -YSDNPFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 336


>gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax
           SaI-1]
 gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative
           [Plasmodium vivax]
          Length = 349

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KL 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D+E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 140

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   DE E    F+    +P++  KA WA ++                D     +  V
Sbjct: 141 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIV 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 247 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK 299

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F + +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 300 IF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 297

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 28/307 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   E+ + +DL  W   + LT +ER  +   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
              +++PE R +   Q   E +HS T+  +I +   D  E     N    VP +  KA+W
Sbjct: 58  STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++              DA      +  + +   EG++F   F  I  L +   M G+ 
Sbjct: 118 ALKWC-------------DAGNASFAERMIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + +++  + P         +   ++  A  +E  +  + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLVNKLPE-------SRITKIITVAVEIEKEFVSDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+     Y++F A+R    +G    +  T NPF WM E+I L+ + NFFE RV 
Sbjct: 218 VELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVG 275

Query: 342 EYQQGAE 348
           EY +   
Sbjct: 276 EYAKSGV 282


>gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
 gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
          Length = 347

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V+ +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+ 
Sbjct: 7   KPLFNPSGDTQVNKRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAV
Sbjct: 67  DYR---KLPQAERRAYDKILSFLIFLDSIQTANL-PNIGEYITANEVNLCLSIQTFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +    K  D   L
Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDQHLLKRNEFIGNLYNEFQKKKDAGVL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR N+M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T+   ++ R M+ E    EI++ H  +     GLN      Y+Q++ N RC  
Sbjct: 237 KEEPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
 gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
          Length = 325

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 159/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   W+ Y       W   E+ + +DL+ W   N L+ DER  
Sbjct: 5   EPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWN--NKLSADERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   +
Sbjct: 63  LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F      P+I  KA+WAL++ ++               +   +  + +   EG
Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  +  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNQHLVNQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +K R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +  + N
Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I+L+ + NFFE RV+EYQ+   +  D
Sbjct: 281 PFDFMD-MINLQGKTNFFEKRVSEYQKAGVMNKD 313


>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
           H]
 gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 349

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 29/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
               +  ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  
Sbjct: 17  EKAFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKD 76

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L ++E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +H
Sbjct: 77  FE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIH 133

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   DE E    F+    +P++  KA WA ++                D  
Sbjct: 134 SETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTN 179

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + 
Sbjct: 180 SFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P        +  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R  
Sbjct: 240 LENKLPE-------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G   +F + +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 293 ECLGSRKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 343

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/324 (31%), Positives = 173/324 (53%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 23  LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMISRLVAFFATGD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 80  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAVE 139

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 140 NIPSIREKAEFCFRWMDSVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 198

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES+H+ F   V++ ++ E P L+  + +++   ML EA  
Sbjct: 199 FRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKEAVE 258

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +AH+    G  G+N  S   Y++ +A++R  ++G   +F  +ENPF +M E+ D++
Sbjct: 259 AELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQDVQ 316

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE R + YQ      + +D
Sbjct: 317 ELTNFFERRASAYQVAVEGSVSFD 340


>gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 347

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 166/350 (47%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYRT---LPAPERRAYDKILSFLVFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +    ++   E  
Sbjct: 123 HSQSYSYMLDTICEPQE------RNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL P+++ + + P    W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
 gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
          Length = 350

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 110/356 (30%), Positives = 192/356 (53%), Gaps = 18/356 (5%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    ++    GE+ + +D    L        L P++Y   ++++  A  N W   EV +
Sbjct: 5   AETRTVTAATTGERHMLLDPGMDL-------TLRPMRYPHFFDRFKEAIKNTWTVEEVDL 57

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DLA       L+  ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ 
Sbjct: 58  HSDLAD---LAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGT 178
           FEEAVH   +  ++ +   DE E F  +     +PSI  KA +  ++  ++        T
Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSIF-ELRELRT 173

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +   + FL +L  F    EG++FY  FA +  L     + G+A    ++ RDES+H+ F 
Sbjct: 174 RADRRAFLLNLICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
            DV++ I+ E P L+  + +++ + M+ EA   E  +A + + +G  GL+     +Y+Q 
Sbjct: 234 FDVVDTIRAEEPDLFDADLERQIKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQH 293

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           +A+RR   +G+ P++  ++NPF +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 294 VADRRLVTLGIAPIYG-SQNPFAFM-ELQDVQELSNFFERRVSAYQVGVSGSVTFD 347


>gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
 gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
          Length = 352

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 137/344 (39%), Positives = 194/344 (56%), Gaps = 5/344 (1%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +    G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M  D+  
Sbjct: 14  AAATGGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHD 73

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +  +  LT  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H
Sbjct: 74  YHHR--LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALH 131

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           + T+Q+ I +L LD+ E++N YR VP I  K   A +               D  Q+F+ 
Sbjct: 132 TWTYQHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVM 191

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
               F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+NQI  
Sbjct: 192 SYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILE 251

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E          +  R M  E+   E+AYA+  +    +G +A    +  +F+ANRR   +
Sbjct: 252 EEKITLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTV 308

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           GLE  F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 309 GLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
 gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
          Length = 321

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  
Sbjct: 2   EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWK---KLTDNERYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E          +  +  KA WA ++                 +    +  V +   EG
Sbjct: 119 VDEKNHLLKAIDTIDCVKEKAKWAEKWI-------------LDKESSYGERLVAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +          L      
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------QLLHPPNP 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++ EA  +E ++    +P   +G+N     QY++F+A+R   ++G   +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SEN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV++YQ+   + 
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308


>gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium
           HP15]
          Length = 352

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
                +        VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M 
Sbjct: 9   KTESRAAHPGAPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  +  +  LT  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +
Sbjct: 69  QDVHDYHHR--LTAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+  +Q+ I +L LD+ E++N YR VP+I  K   A +       P      KD  
Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDL 186

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           QEF+     F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+
Sbjct: 187 QEFIMSYLFFAAVFEGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI  E    +     +  R M  E+   E AYA   +    +G +A    +  +F+ANR
Sbjct: 247 NQIVEEENITFDP---KAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANR 303

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           R   +GLE  F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 347

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 166/350 (47%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYRT---LPAPERRAYDKILSFLVFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +    ++   E  
Sbjct: 123 HSQSYSYMLDTICEPQE------RNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL P+++ + + P    W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
 gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
          Length = 351

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 167/352 (47%), Gaps = 15/352 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +      + V  ++M+   + ++N    +KY WA E Y  A NN W+P E+ M  D
Sbjct: 9   ARKKLFNETGDIEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNAD 68

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+E
Sbjct: 69  VQDYR---KLSPAEKTAYDKILSFLIFLDSIQTANL-PNVGQYITANEVNLCLTIQAFQE 124

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVHS ++ Y++ ++   +       R       K +  L          +     D    
Sbjct: 125 AVHSQSYSYMLDTICSPDE------RTAILYQWKDDEHLLKRNKFIGDLYNEFQDDKSAL 178

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L  + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I++
Sbjct: 179 ALLKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIHE 238

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E  +  R+M+ E    EIA+ H  +     GL       Y+Q++ N RC
Sbjct: 239 LQKEEPQLFTPENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLGNLRC 298

Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             +G EPL++ + E P    W+S+  +    + +FFE + T Y + + LK D
Sbjct: 299 ENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350


>gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
 gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
          Length = 347

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +    V+ +RM+   + ++N    +KY W    Y  A NN W+P E+ M  D+ 
Sbjct: 7   KPLFNPQGDTEVNLRRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L + ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DY---PELPEAERTAYDKILSFLIFLDSIQTANL-PNIGQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +       D + L
Sbjct: 123 HSQSYSYMLDTICSPVE------RNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L++ E  +  + M+ E    EIA+ H  +     GL      +Y++++ N R   
Sbjct: 237 KEEPQLFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTS 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++ Y E P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 297 LGFEPLYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 346


>gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 400

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +  + +D K+M+    +++N    +KY W  + Y    NN W+P E+ M  D+  +
Sbjct: 62  LFNEKGDIGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQY 121

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L   ER    + L F    +SL  NN V  I ++++  E    L  QAF+EAVHS
Sbjct: 122 RT---LPVAERRAYDKILSFLVFLDSLQTNN-VPFIAQYITANEAVLCLTIQAFQEAVHS 177

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       R       + +  L          F     D  +  L  
Sbjct: 178 QSYSYMLDTICSPDE------RTEILYQWRDDEHLLARNKFIGDLFMAFQNDQSERNLMR 231

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++++++++E
Sbjct: 232 VLVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVE 291

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L++ E  ++ R M+ E    EIA+ H  +     GL       Y+Q++AN R   +G
Sbjct: 292 RPDLFSAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLG 351

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++      P    W+S+  D    + +FFE + T Y +   +  D
Sbjct: 352 FAYIYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAMIDD 399


>gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 394

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 153/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   + P++Y   +E Y  A  + W   E+ +  DL+ W     L  +ER 
Sbjct: 68  NEPLLNEDKNRLIMHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLSDWND--KLNSNERF 125

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 126 FISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENIHSETYSLLIDTYIK 185

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++                D+    +  V +   E
Sbjct: 186 DPKESDFLFNAIDYIPQIKEKAEWALRWINN-------------DEALFGERLVAFASIE 232

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  K  
Sbjct: 233 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFS-------HLDNKPD 285

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G E  +K  E
Sbjct: 286 PAIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRLLVSFGNEKYYKV-E 344

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+ + +
Sbjct: 345 NPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 375


>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
 gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
          Length = 345

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 173/324 (53%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ +
Sbjct: 25  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 82  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI AKA +  ++   +          D  + FL +L  F    EG++FY  FA +  
Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKIDRLESQSDR-RRFLLNLICFAACIEGLFFYGAFAYVYW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  A  
Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+  ++
Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE R + YQ      + +D
Sbjct: 319 ELTNFFERRPSAYQVAVEGSVSFD 342


>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
 gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
          Length = 348

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 112/324 (34%), Positives = 183/324 (56%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E++ +A  N W   EV +  DLA       L+  E  ++KR + FFA+ +
Sbjct: 28  LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLAD---LRKLSPAEHHLVKRLVAFFATGD 84

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE    E F    
Sbjct: 85  TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  ++        T    + FL +L  F    EG++FY  FA +  
Sbjct: 145 NIPSIKRKADFCFRWIDSIFDL-RELRTAADRRSFLLNLICFAACIEGLFFYGAFAYVYF 203

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DVI+ ++ E P L+  E  +++R ML EA  
Sbjct: 204 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEPELFDDELARQAREMLAEAVD 263

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + + +G  G++      Y++ +A+RRC Q+GLEP++  + NPF +M E+ D++
Sbjct: 264 CETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLEPIYG-SPNPFTFM-ELQDVQ 321

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV  YQ G   E+ +D
Sbjct: 322 ELSNFFERRVAAYQIGVSGEVAFD 345


>gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 338

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 10/333 (3%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           R+L+   D+  L P++Y   +E++ +A  N W   EV +  DL    +    TD ER +I
Sbjct: 8   RLLDPGMDL-TLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATF---TDSERHLI 63

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH   +  ++ +   D 
Sbjct: 64  NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDP 123

Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            +    F     +PSI  KA +  ++  T+        T +  + FL +L  F    EG+
Sbjct: 124 EDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACIEGL 182

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY  FA +  L     + G+A    ++ RDES H+NF   V++ ++ E P L+  E  +
Sbjct: 183 FFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDELTE 242

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               M+ EA   E+ +A +   +G  G+     + Y++++A++R  ++G+   +  ++NP
Sbjct: 243 AVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGMPVRYG-SKNP 301

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F +M+ + D+++  NFFE R T YQ       D
Sbjct: 302 FGFMA-LQDVQELTNFFERRPTAYQVAVGGTVD 333


>gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens]
 gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWI-------------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +         HL  K  +++ R ++  A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N    +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV 
Sbjct: 218 VKLIGMNCTLMKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQRMGVMS 284


>gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
           xanthus DK 1622]
 gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus
           xanthus DK 1622]
          Length = 349

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 9/340 (2%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++   +     +  +LN   ++  L P+ Y   +E Y +A  N W   EV    DL   +
Sbjct: 1   METPRRSARSTEAMLLNPGLNL-TLRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLR 59

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           S   +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H  
Sbjct: 60  S--KMTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQ 117

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  ++ +   D  E    F     +PSI  KA + +++  ++     T  TK   ++FL
Sbjct: 118 FYLTLLDTYVPDPAERAMAFAAVDNIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +L  F    EG++F+  FA +  L     + G+A    ++ RDES H+ F  + I   +
Sbjct: 177 LNLICFAGCIEGLFFFAAFAYVYFLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVAR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  + ++    ML EA   E  +A + +  G +GL+      Y++++A++R   
Sbjct: 237 KEEPDLFDAQMERDVVAMLREAVECETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQM 296

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +G+ P+F  T+NP  +M  + D+++  NFFE RV+ YQ  
Sbjct: 297 LGMTPVFG-TKNPLHFMD-LQDVQELTNFFERRVSSYQVA 334


>gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Nomascus leucogenys]
 gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Nomascus leucogenys]
          Length = 297

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWI-------------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +         HL  K  +++ R ++  A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N    +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV 
Sbjct: 218 VKLIGMNCILMKQYIEFVADRLMLELGFGKVF-RVENPFDFM-ENISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQRMGVMS 284


>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
 gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
 gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
 gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
          Length = 345

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/324 (30%), Positives = 173/324 (53%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ +
Sbjct: 25  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATGD 81

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 82  SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI AKA +  ++   +          D  + FL +L  F    EG++FY  FA +  
Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKIDRLESRSDR-RRFLLNLICFAACIEGLFFYGAFAYVYW 200

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  A  
Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+  ++
Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE R + YQ      + +D
Sbjct: 319 ELTNFFERRPSAYQVAVEGSVSFD 342


>gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
 gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
          Length = 361

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 2/330 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           K+++N R  +   LLPLKY WA+E Y +   NHW P ++ M  D+  WK    +++ ER 
Sbjct: 26  KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI+  I   ++ PE +  L R A EE VH+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L +    T T +  Q+F +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTIT-ENKQKFAKNVFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI E ++Y +RDES H+    ++   +  ENP +WT EF+ +
Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R  + EA  LE  +  + +P   +GL      QY+ +IA+RR    GL+PL     NP 
Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PW++E++D+KKE+NFFE RVTEYQ+ + L+
Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354


>gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
          Length = 346

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 164/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +   +V ++RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAV
Sbjct: 67  DY---PMLDAGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQTFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L    T     +    KD      
Sbjct: 123 HSQSYSYMLDTICEPQT------RNEVLYQWKNDEHLLARNTFIGNLYNEFQKDKSPFTF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 MKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +     R M+ E    EIA+ H  +     GL       Y+Q++ N RC  
Sbjct: 237 NEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCMS 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EP+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
 gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
          Length = 352

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +  ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 12  KPLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  ER    + L F    +SL + N+   I  +++  E    L  QAF+E+V
Sbjct: 72  DY---PRLTAAERAAYDKILSFLVFLDSLQSANL-PNIAEYITANEVNLCLSIQAFQESV 127

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D    
Sbjct: 128 HSQSYSYMLDTICDP------AKRNEILYQWKTDEPLLARNTFIGNLYNEFQERRDARTF 181

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 182 LRVLMANFILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILELQ 241

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  R ML E    EIA+    +     GL     E Y++++ N R   
Sbjct: 242 KEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y   P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 302 LGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351


>gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
 gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
          Length = 352

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/355 (25%), Positives = 158/355 (44%), Gaps = 15/355 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                 P+      ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +
Sbjct: 7   QTLVKKPLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINL 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  +     L++ ER    + L F    +SL + N+   I  +++  E    L  QA
Sbjct: 67  TQDVKDY---PRLSEAERAAYDKILSFLVFLDSLQSANL-PNIAEYITANEVNLCLSIQA 122

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           F+E+VHS ++ Y++ ++           R       K +  L    T     +    +  
Sbjct: 123 FQESVHSQSYSYMLDTICDP------AKRNEILYQWKTDKHLLARNTFIGDLYNEFQEHR 176

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D      + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +
Sbjct: 177 DARTFLRVLMANYILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSI 236

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           I +++ E P L++ E     R ML E    EIA+    +     GL     E Y++++ N
Sbjct: 237 ILELQKEEPQLFSNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGN 296

Query: 302 RRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            R   +G   L++ Y   P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 297 LRWSSLGFGQLYEGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351


>gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
 gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
          Length = 363

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 163/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            +      V +  +RM+   + ++N    LKY W  E Y  A NN W+P E+ M  D+  
Sbjct: 24  ALFNEHGDVELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQD 83

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+EAVH
Sbjct: 84  YR---KLSKAEKTAYDKILSFLIFLDSIQTANL-PNVGQYITANEVNLCLTIQAFQEAVH 139

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   E       R       K +  L          +     D     L 
Sbjct: 140 SQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSALALV 193

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++ 
Sbjct: 194 KVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQK 253

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T E  +  R M+ E    EI + H  +     GLN      Y+Q++ N RC  +
Sbjct: 254 EEPQLFTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRCENL 313

Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G EPL++ + E P    W+S+  +    + +FFE + T Y + + +  D
Sbjct: 314 GFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 362


>gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
 gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
          Length = 325

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 30/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +LN   +   L P+KY   W+ Y  A ++ W   EV +  D   W     L D ER  
Sbjct: 8   EPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDW---LSLNDKERYF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V      ++  E + +   Q   E +HS  +  +I +   D
Sbjct: 65  ISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITD 124

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +P I  KA+WAL++ +              ++       + +   EG
Sbjct: 125 QDEKTHLFNAISTIPCIKKKADWALKWIKD-------------EKSSFATRVIAFACVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L     M G+    + I RDE LH +F   +   +  ++PH       
Sbjct: 172 IFFSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFACLLNQYLINKSPH------- 224

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +   ++P   +G+N     QY++F+A+R    +GLE  +  T N
Sbjct: 225 --ILDIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 282 PFDFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 347

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L++ ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYKQ---LSEPERRAYDKILSFLIFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +     + + E  
Sbjct: 123 HSQSYSYMLDTICEPQE------RNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  +     R M+ +    EI + H  +     GL     E+Y++++ N RC  
Sbjct: 237 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EP++  +E       W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83]
 gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83]
          Length = 321

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  
Sbjct: 2   EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWK---KLTDNERYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E          +  I  KA WA ++                 +    +  V +   EG
Sbjct: 119 VDEKNHLLKAIDTIDCIKEKAKWAEKWI-------------LDKESTYGERLVAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +  Q+             
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLLY-------PPST 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++ EA  +E ++  + +P   +G+N     QY++F+A+R   ++G   +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SEN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV++YQ+   + 
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308


>gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
          Length = 347

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +   + + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  DL 
Sbjct: 7   KPLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K+   LT  ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DYKN---LTAAERTAYDKILSFLVFLDSIQTANLPC-IAQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R+      K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSPVE------RDRILYQWKEDEHLLRRNTFIGNLYNEFQEKKDDVTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 177 LRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +     R+ML E    EI +    +     GL       Y++++ N R   
Sbjct: 237 KEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWSG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y E P    W+++  +    + +FFE + T Y + A +  D
Sbjct: 297 LGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAIVDD 346


>gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1]
 gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1]
          Length = 333

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 24/322 (7%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
             S    L P++Y   WE Y  A  + W   EV +  DL  W+++  LT+ ER  I   L
Sbjct: 15  EPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISHIL 72

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145
            FFA S+ +V +N++    + L+ PE   +   Q   E VHS  +  +I     D     
Sbjct: 73  AFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQRKH 132

Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
             FN    VPSI  KA W +++              D D+    D  V +   EG++F  
Sbjct: 133 MLFNAIDTVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFFSG 179

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA I  L +   M G+    ++I RDE LH +F I +        P   + +  +K   
Sbjct: 180 SFAAIFWLKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYL--RPECRSSD--EKVIN 235

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ +A  +E  +  E++P   +G+N     +Y++F+A+R  +++    ++   +NPF +M
Sbjct: 236 IVTDAVRIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFDFM 294

Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345
           +  I L+ + NFFE +V+EY++
Sbjct: 295 TS-ISLEGKTNFFEKKVSEYKR 315


>gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
 gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
          Length = 352

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N         G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M 
Sbjct: 9   NTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  +  +  L+  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +
Sbjct: 69  QDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+  +Q+ I +L LD+ E++N YR VP+I  K   A +              KD  
Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDL 186

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           QEF+     F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+
Sbjct: 187 QEFIMSYLFFAAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI  E          +  R M  E+   E AYA+  +    +G +A    +  +F+ANR
Sbjct: 247 NQILEEENITLDP---KAVRDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVANR 303

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           R   +GLE  F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum]
          Length = 337

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 28/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           + + ++  + D + +L +      L P++Y   +  Y  A  + W   EV +  D+  W 
Sbjct: 3   LPSEQEEFSDDQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW- 61

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L  DE+  I   L FFA+S+ +V  N+V      +   E R +   Q   E +HS 
Sbjct: 62  --NILNSDEKRFISHVLAFFAASDGIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSE 119

Query: 130 TFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D   + ++F+    +P +  KA+WA+++              ++ +   
Sbjct: 120 MYSLLIDTYISDFQEKDKMFSAIETMPFVKKKADWAIRWI-------------ESTESHF 166

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K
Sbjct: 167 SERLVAFAAVEGIFFSGSFASIFWLKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLK 226

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P       + +   ++ EA +LE  +  E +P   +G+N     QY++F+A+R   +
Sbjct: 227 KKLP-------RDRILQIITEAVVLEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIE 279

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  + Y +NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 280 LGYDKHY-YAQNPFDFM-ENISLSGKTNFFEKRVGEYQRMGVM 320


>gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis
           elegans]
 gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 381

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ ML    +   + PLK+   W  Y  A  + W   EV +  D+  W+  NG   DE+ 
Sbjct: 61  DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   
Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    FN   E   I  KA+WAL++                 +    +  + +   E
Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRWI-------------SDKKASFAERLIAFAAVE 224

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + ++++        K  
Sbjct: 225 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQK-------KLT 277

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           QQ+   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G + L+K ++
Sbjct: 278 QQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYK-SK 336

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I +  + NFFE RV+EYQ+   +
Sbjct: 337 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 367


>gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 362

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 3/330 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y +   NHW P ++PM  D+  W+    +TD ER 
Sbjct: 26  KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I+  +G+F+++E +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  + ++ ++ L          +  Q   +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRRD-LDLTQPENKQLLARNMFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI + ++Y +RDES H+    +++  +  ENP +WT  F+++
Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319
            R  + EA  LE  +  + +P   VGL       Y+ +IA+RR   +GL P+     +NP
Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            PW++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354


>gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
           chabaudi]
 gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium
           chabaudi chabaudi]
          Length = 349

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++LN  S    L P+ Y   W  Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLL 140

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   DE E    F+    +P+I  KA WA ++                D     +  V
Sbjct: 141 IDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWIN--------------DTNSFAERIV 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 247 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 300 VF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 344

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        +  KR++N  + ++N    +KY W  + Y    NN W+P EV +  DL 
Sbjct: 6   KPLFNEFGDREITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L D+ER+   + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYQN---LLDEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     +  +E L
Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 LKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            EN  L+T+E + + R M+      EI + H  +     G+N    E+Y++++ N+R  +
Sbjct: 236 NENAELFTEEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKE 295

Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           I LEPLF+ +  NP PW+    +    + +FFE R T Y + A L  D
Sbjct: 296 INLEPLFEGHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATLVDD 343


>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 365

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 177/324 (54%), Gaps = 10/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E +  A  N W   E+ +  DLA     N L+  ER ++ R + FFA+ +
Sbjct: 44  LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLH--NKLSPAERHLVSRLVAFFATGD 101

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150
           ++VANN+VL +Y H+++PE R YL RQ FEEAVH   +  ++ +   DE E F  +    
Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +   +  ++ +      TK+  ++FL +L  F    EG++FY  FA +  
Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVYF 220

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  +V+  ++ E P L+  E   + R ML EA  
Sbjct: 221 LRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAVD 280

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+      Y++ +A+RR  Q+G+  ++  T+NP  +M E+ D++
Sbjct: 281 AEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDVQ 338

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ G    + +D
Sbjct: 339 ELSNFFERRVSAYQVGVEGSVSFD 362


>gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
 gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 341

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 178/342 (52%), Gaps = 13/342 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++R+     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 5   KKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 64

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+
Sbjct: 65  DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++M+R    + AK ++  +  + L++           +  +
Sbjct: 123 HSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPI--------ERNI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +K
Sbjct: 175 IKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVK 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E+P L+TK+ +++   M  EA  +E A+         +GL +   ++Y++++A+ R  +
Sbjct: 235 KESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRR 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           IGL  L+   ++P  W+       + + NFFE  VT Y +G+
Sbjct: 295 IGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 347

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS
Sbjct: 69  ---PLLTVGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQIFQEAVHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       R       K +  L    T     +    KD        
Sbjct: 125 QSYSYMLDTICEPQT------RNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+++E     R M+ E    EIA+    +     GL       Y++++ N RC  +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298

Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            EPL+    +      W+S+  +    + +FFE R T Y + + L  D
Sbjct: 299 FEPLYDGYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae]
 gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16]
          Length = 365

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 28/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    +   + PL++   W+ Y  A  + W   EV +  D+  W+  NG   DE+ 
Sbjct: 45  DEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 101

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   
Sbjct: 102 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 161

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    FN   E   I  KA+WAL++                 +    +  + +   E
Sbjct: 162 DEKERMKLFNAIFEFEFIKKKADWALRWI-------------SDTKASFAERLIAFAAVE 208

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 209 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLS 261

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G + L+   +
Sbjct: 262 QERIFEIIRDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGCDKLYNV-K 320

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I +  + NFFE RV+EYQ+   +
Sbjct: 321 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 351


>gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
 gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
          Length = 347

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS
Sbjct: 69  ---PLLTVGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQIFQEAVHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       R       K +  L    T     +    KD        
Sbjct: 125 QSYSYMLDTICEPQT------RNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+++E     R M+ E    EIA+    +     GL       Y++++ N RC  +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298

Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            EPL+    +      W+S+  +    + +FFE R T Y + + L  D
Sbjct: 299 FEPLYDGYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 340

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 178/342 (52%), Gaps = 13/342 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++R+     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 4   KKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+
Sbjct: 64  DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++M+R    + AK ++  +  + L++           +  +
Sbjct: 122 HSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPI--------ERNI 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +K
Sbjct: 174 IKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E+P L+TK+ +++   M  EA  +E A+         +GL +   ++Y++++A+ R  +
Sbjct: 234 KESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRR 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           IGL  L+   ++P  W+       + + NFFE  VT Y +G+
Sbjct: 294 IGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 334


>gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
 gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
          Length = 352

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 135/343 (39%), Positives = 193/343 (56%), Gaps = 5/343 (1%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
            + +    VNVDDKR++N  +DVNQL P KY WAWE +++A  NHW P +V M  D+  +
Sbjct: 15  ALNSSVAPVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVNMSQDVHDY 74

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
             +  L   E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEAVH+
Sbjct: 75  HHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAVHT 132

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            T+Q+ I +L LD+GE++N YR VP I  K   A +              KD  QEF+  
Sbjct: 133 WTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKDDLQEFIMS 192

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
              F  VFEG WFY GF+ I +L R   M G  EQ+QYI+RDE++H +FG+ V+NQI  E
Sbjct: 193 YLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLKVVNQILEE 252

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
               +     +  R M  E+   E  YA+  +    +G +A    +  +F+ANRR   + 
Sbjct: 253 ENISFDP---KAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFVANRRARTVN 309

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L   F   +N  PW+ E   ++KEKNFFETRV EYQ GA+L+W
Sbjct: 310 LPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352


>gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
 gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
          Length = 358

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 18  KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 77

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L++ ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 78  DYKQ---LSEPERRAYDKILSFLIFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 133

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +     + + E  
Sbjct: 134 HSQSYSYMLDTICEPQE------RNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 187

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 188 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 247

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  +     R M+ +    EI + H  +     GL     E+Y++++ N RC  
Sbjct: 248 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 307

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EP++  +E       W+S+  +    + +FFE + T Y + + L  D
Sbjct: 308 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 357


>gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxidans DMS010]
 gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxydans DMS010]
          Length = 383

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 133/341 (39%), Positives = 188/341 (55%), Gaps = 5/341 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              K +N DDKR++N  +D+NQL P KY WAW  +L+A  NHW P ++ M  D+  ++  
Sbjct: 48  NNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYR-- 105

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LT +ER + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+
Sbjct: 106 HKLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTY 165

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           Q+ I ++GLD+ E++N YR VP I  K   A     T+         +D  + F+     
Sbjct: 166 QHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMSYAF 225

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +H +FGI V  QI  E   
Sbjct: 226 FAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQIMKEENI 285

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +K + M  EA   E  YA   +    +G +        ++ ANRR  Q+G E 
Sbjct: 286 TLDP---KKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAKQLGFEE 342

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            F   E   PW+ E  +++KEKNFFET+VTEYQ G  LKWD
Sbjct: 343 PFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383


>gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
 gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
          Length = 347

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       ++  +RM+   + ++N    L+Y W    Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPGGDTDIRLRRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT++ER    + L F    +S+   N+   I  +++  E    L  Q F+E V
Sbjct: 67  DY---PNLTENERTAYNKILSFLVFLDSIQTANLPC-IGEYITANEINLCLSIQTFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSPVE------RNDILYQWKNDAHLLRRNTFIGDLYNEFQEKKDDFTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  + ML E    EIA+ H  +     GL      +Y+Q++ N R   
Sbjct: 237 KELPELFTPEHIEILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTN 296

Query: 307 IGLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G +P++   T+ P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 297 LGFDPIYPDQTQEPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
 gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
          Length = 342

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 182/324 (56%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DLA       L+  ER ++ R + FFA+ +
Sbjct: 22  LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVSRLVAFFATGD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE E F   +   
Sbjct: 79  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 139 NIPSIARKAEFCFRWIDSIF-ELRELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV+  ++ E P L+  E +++ + ML EA  
Sbjct: 198 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQVKEMLAEAVE 257

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+++A + + +G  G++     +Y+Q +A+RR   +G+ P++  + NPF +M E+ D++
Sbjct: 258 CEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPFAFM-ELQDVQ 315

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ G    + +D
Sbjct: 316 ELSNFFERRVSAYQVGVTGSVTFD 339


>gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
 gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
          Length = 344

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   N LT+DER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 66  DY---NKLTNDERTAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +    +   QE L
Sbjct: 122 HSQSYSYMLDTICSPEK------RNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    +++ +++
Sbjct: 176 IKTIMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +E P ++T E + + + M+  A   EI++ +  +     G+N      Y++++ N R   
Sbjct: 236 LEQPEIFTDEVKNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKA 295

Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGL+ +++ +  NP  W+  + D    + +FFE + T Y +   L  D
Sbjct: 296 IGLDAIYEGHDNNPAAWVDILSDANSVKTDFFEAKSTAYAKAGALIDD 343


>gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 343

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 173/342 (50%), Gaps = 13/342 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I     + +V+++R+     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 7   KKIYNPNSKESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+
Sbjct: 67  DYSD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++ M+R    + +K ++     + LS         +  +  L
Sbjct: 125 HSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIANVYEELS--------VNPTESIL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 177 LKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSLR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E PHL+TK+  ++   M  EA  +E  +         +GL +    +Y++++A+ R  +
Sbjct: 237 KEMPHLFTKDLIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLTR 296

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           +GL  L+    +P  W+       + + NFFE  VT Y +G+
Sbjct: 297 VGLPALYNAR-HPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 337


>gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium
           spinosum DSM 4136]
          Length = 361

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/329 (34%), Positives = 186/329 (56%), Gaps = 2/329 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y     NHW P ++ MQ D+  W+S + + + ER 
Sbjct: 26  KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI   +   ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L          +  +   +++FVF    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRRD-LDLTQIENKRLLAKNIFVFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R  K  GI   ++Y +RDES H+    ++   +  ENP +WT EF+++
Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  LE  +  + +P   VGL A   E Y+ FIA+RR   +GL  L     NP 
Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PW++E+ D++KE+NFFE  VT+YQ+ + L
Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353


>gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces
           cerevisiae]
          Length = 399

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/336 (30%), Positives = 155/336 (46%), Gaps = 33/336 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT---EVPMQDDLALWKSKNGLTDD 77
           ++ +LN   +   L P+KY   W+ Y     + W      E+ +  D+  W   N + ++
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAY---EASFWTAETAEEIDLSKDIHDWN--NRMNEN 129

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +
Sbjct: 130 ERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDT 189

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F  
Sbjct: 190 YIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-A 236

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  
Sbjct: 237 SIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKN 289

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K        ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K
Sbjct: 290 KPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK 349

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 350 V-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 352

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 171/348 (49%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L+  E+    R L F    +S+   N+   +  +++  E    L  Q ++EA+HS
Sbjct: 74  RN---LSKAEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLAIQTYQEAIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   +       R       K +  L          +    KD  +  L  
Sbjct: 130 QSYSYILDTICSPDE------RTRILYLWKEDEHLLKRNKFIGDQYNEFIKDDSEFNLMR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ N R   +G
Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           L  +++ Y E P    W+SE  D  + + +FFE +V+ Y + + ++ D
Sbjct: 304 LGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
 gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
          Length = 356

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/322 (32%), Positives = 168/322 (52%), Gaps = 8/322 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   + +Y  A  N W   EV    DL     + G    ER +I+R + FFA+ +
Sbjct: 35  LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMG--PAERHLIQRLVAFFATGD 92

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL++YRHL+ PE R YL RQ +EEA+H   +  ++ +   D  +    F    
Sbjct: 93  SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA + L++  T+++     G     ++FL +L  F    EG++FY  FA +  
Sbjct: 153 TIPSIRRKAEFCLRWQDTVAAIPRLDG-PAHRRQFLLNLICFAACTEGLFFYGAFAYVYF 211

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F   VI+ ++ + P L+  E +     M+ EA  
Sbjct: 212 LRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEPELFDAELEAAVVEMIEEAVA 271

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+A+A + +  G  GL       Y+++ A++R  ++G+   +  T NP  +M E+ D+ 
Sbjct: 272 CEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMATRYGST-NPLSFM-ELQDIP 329

Query: 331 KEKNFFETRVTEYQQGAELKWD 352
           +  NFFE RV+ YQ G     D
Sbjct: 330 ELANFFERRVSAYQHGVSGTID 351


>gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Nomascus leucogenys]
 gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan
           troglodytes]
 gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo
           sapiens]
 gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +    FN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +          L  K  +++ R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
          Length = 297

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 145/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +    FN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +          L  K  + + R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPSEDRVREIIADAVQIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCVLMKQYIEFVADRLLGELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 351

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 159/349 (45%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            +      + +  +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+  
Sbjct: 12  ALFNEAGDIELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQD 71

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +++   L+  E+    + L F    +S+   N+   I ++++  E    L  QAF+EAVH
Sbjct: 72  YRN---LSAIEKTAYDKILSFLIFLDSIQTANL-PNIGQYITANEINLCLTIQAFQEAVH 127

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   E       R       K +  L          +     D     L 
Sbjct: 128 SQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALL 181

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   V EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++ 
Sbjct: 182 KVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQK 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++T    +  R M+ E    EI +    +     GLN      Y++++ N RC  +
Sbjct: 242 EEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCENL 301

Query: 308 GLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G EPL++          W+S+  +    + +FFE + T Y + + +  D
Sbjct: 302 GFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
 gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
          Length = 360

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            PI        +D +RM+   + ++N    LKYGW  + Y  A NN W+P E+ M  D+ 
Sbjct: 20  KPIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDVQ 79

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   + + ++  E    L  QAF+EA+
Sbjct: 80  DYR---RLSPAEKTAYDKILSFLIFLDSVQTANL-PNLAQFITANEVNLCLTIQAFQEAI 135

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       + +  L          +     + D   +
Sbjct: 136 HSQSYSYMLDTICSPDE------RTGILYQWRDDAHLLARNKFIGDLYQNFMVNQDVCQI 189

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     ++ +++
Sbjct: 190 VKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSILREMQ 249

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P ++T     + R M+ +    EIA+ H  +    VGLN      Y+Q++ N RC  
Sbjct: 250 KEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNLRCTD 309

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G +P+++ + + P    W+ +  +    + +FFE R T Y +   L  D
Sbjct: 310 LGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSLLDD 359


>gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens]
          Length = 297

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +    FN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +          L  K  +++ R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPPEERVREIIVDAVKIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 322

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 31/333 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   +  Y  A    W   E+    DL  ++    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFE---KLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ ++  R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+    +P++  KA WA ++                D     +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P        
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------- 217

Query: 259 QKSRTMLHEA--TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q  + ++ EA    +E ++  E++P   +G+N+    QY++F+A+R    +G   +F ++
Sbjct: 218 QMVQNIVKEAGGVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HS 276

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 277 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 308


>gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
          Length = 325

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+++   WE Y       W   E+ +  DL  W S   L DDER  
Sbjct: 5   EPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNS--KLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F      P+I  KA+WAL++ ++               +   +  + +   EG
Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNKHLVNKVSK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  E  +  T N
Sbjct: 222 ERIREIIVDALNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV +YQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGDYQKAGVMDQD 313


>gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 336

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 102/316 (32%), Positives = 166/316 (52%), Gaps = 8/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   +E Y +A  N W   EV    DL   +S   +TD ER +I R + FFA+ +
Sbjct: 11  LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRS--KMTDAERHLIHRLVAFFATGD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  +    F    
Sbjct: 69  SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPADRAKAFAAID 128

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA + L++  ++   +    T++  + FL +L  F    EG++F+  FA +  
Sbjct: 129 NIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIEGLFFFAAFAYVYF 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F  + I   + E P L+    Q     M+ EA  
Sbjct: 188 LRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARMQADVVAMMREAVE 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+     QY++++A++R   +GL P+F   +N  P+M  + D++
Sbjct: 248 CETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVF-RVKNSLPFMD-LQDVQ 305

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ  
Sbjct: 306 ELTNFFERRVSAYQVA 321


>gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           hepaticus ATCC 51449]
 gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 349

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 176/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   E   +V D+++     + +  L  +KY WA+  +     N W P EV M  D  
Sbjct: 13  KQIYNPESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKR 72

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQA+EEA+
Sbjct: 73  DYN--GGLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEAL 130

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++NM+R    + +K +        L+        K+ +++ L
Sbjct: 131 HSQSYAVMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELA--------KNPNEQNL 182

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++I+ ++
Sbjct: 183 LKAMFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISSLR 242

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E  HL+T   +++   M  +A  +E  +         +GL +    +Y+Q++A+ R   
Sbjct: 243 KEQGHLFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARLKA 302

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +GL  L+  ++NP  W+ +      ++ NFFE +VT Y +G+ + +D
Sbjct: 303 VGLPQLYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS-INFD 347


>gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str.
           17XNL]
 gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii]
          Length = 349

 Score =  293 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++LN  S+   L P+ Y   W  Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   DE E    F+    +P+I  KA WA ++                D     +  V
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWIN--------------DTNSFAERIV 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                     + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 247 NV-------VQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 300 VF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 352

 Score =  293 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L+  E+    R L F    +S+   N+   +  +++  E    L  Q ++EA+HS
Sbjct: 74  RN---LSKAEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLAIQTYQEAIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   +       R       K +  L          +    KD  +  L  
Sbjct: 130 QSYSYILDTICSPDE------RTRILYLWKEDDHLLKRNKFIGDQYNEFIKDDSEFNLMR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ N R   +G
Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           L  +++ Y + P    W+SE  D  + + +FFE +V+ Y + + ++ D
Sbjct: 304 LGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
 gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
          Length = 355

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      + V  ++M+   + ++N    +KY W    Y  A NN W+P E+ +  D+  
Sbjct: 16  PLFNPNGDIQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDIKD 75

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +++   L   E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVH
Sbjct: 76  YRN---LPKAEKRAYDKILSFLIFLDSIQTANL-PGISEYITANEVNLCLSIQAFQEAVH 131

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +       R       K +  L          +     +   E L 
Sbjct: 132 SQSYSYMLDTICEPQE------RNEVLYQWKEDEHLLARNEFIGNLYNAFQTEKSMEMLV 185

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   + EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL    +++ ++K 
Sbjct: 186 KTIVANYILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKK 245

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T+++  + R+M+ E    EI + H  +     GLN      Y+Q++ N RC  +
Sbjct: 246 EQPDLFTEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNL 305

Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G  P+++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 306 GFAPIYEGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSALVDD 354


>gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
           [Kitasatospora setae KM-6054]
          Length = 339

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/340 (31%), Positives = 183/340 (53%), Gaps = 11/340 (3%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
             D K+ML        L P++Y   +++Y  A  N W   EV +  D+A       L++ 
Sbjct: 3   TEDRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSEG 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH   +  ++ +
Sbjct: 60  ERHMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 119

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  +    F     +PSI  KA +  +Y   +     +  +K+  + FL +L  F  
Sbjct: 120 YLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAV-DHIDSLRSKEDRRAFLLNLICFAA 178

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++FY  FA +        + G+A    ++ RDES+H++F   V++ ++ E P L+ 
Sbjct: 179 CVEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLFD 238

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            +  ++   ML EA   E+ +A +   +G  G+N  S  +Y+Q +A++R  ++GL   + 
Sbjct: 239 DKMARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGLPIRYG 298

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            T NPF +M E+ ++++  NFFE RV+ YQ      + +D
Sbjct: 299 ST-NPFGFM-ELQNVQELTNFFERRVSAYQIAVEGSVSFD 336


>gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
 gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
          Length = 349

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 15/355 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +    + +   +   ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +
Sbjct: 4   DKLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINL 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q 
Sbjct: 64  AQDIKDY---PNLPQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQT 119

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           F+E +HS ++ Y++ ++   E       R       K +  L    T     +    +  
Sbjct: 120 FQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDCYNEFQEKR 173

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++
Sbjct: 174 DKFALMKACMANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNI 233

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           I ++K E P L+T E       M+ E    EIA+    +     GL       Y+ ++ N
Sbjct: 234 IVELKQEQPELFTPERIAVYEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGN 293

Query: 302 RRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            R   +G   L+++ +N      W+++  +  K + +FFE + T Y +   L  D
Sbjct: 294 LRWRSLGFGNLYEHNQNEPDDMQWVAQYSNANKVKTDFFEAKSTAYAKSTALIDD 348


>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 331

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 103/324 (31%), Positives = 173/324 (53%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y +A  N W   EV +  DLA       +T +ER +I R + FFA+ +
Sbjct: 11  LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLAD---LARMTPEERHLINRLVAFFATGD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H++ PE R YL RQ FEEAVH   +  ++ +   D  E    F    
Sbjct: 68  SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  +L        +++  + FL +L  F    EG++FY  FA +  
Sbjct: 128 HIPSIRNKAEFCFRWIDSLGGLDRLE-SREDRRAFLLNLICFAACIEGLFFYGAFAYVYW 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES+H+ F   V++ ++ E P L+  +   +   M+ EA  
Sbjct: 187 FRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQVTQMIEEAVE 246

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+A+A +    G  G+N     QY++++A++R  ++     +  T NPF +M E+ D++
Sbjct: 247 AELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRFPVRYG-TANPFAFM-ELQDVQ 304

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ      + +D
Sbjct: 305 ELANFFERRVSAYQVAVEGNVSFD 328


>gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei]
 gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei]
          Length = 377

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + PL++   W+ Y  A  + W   EV +  D+  W+  NG   DE+ 
Sbjct: 57  NEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 113

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   
Sbjct: 114 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 173

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    FN   E   I  KA+WA+++                 +    +  + +   E
Sbjct: 174 DEKERLTLFNAIFEFEFIKKKADWAMKWI-------------SDKKASFAERLIAFAAVE 220

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 221 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLT 273

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G + L+   +
Sbjct: 274 QERIFEIIRDAVCIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-K 332

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I +  + NFFE RV+EYQ+   + 
Sbjct: 333 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVMS 364


>gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
 gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1]
          Length = 337

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 5/337 (1%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   V+DKR++N   D+NQL P +Y WAWE +LSA  NHW P E+ M DD+  +  +  L
Sbjct: 5   KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ 
Sbjct: 63  SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I SLGLD+ E++N YR VP I AK   + +    +  P      +D   EF      F  
Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           VFEG WFY GF+ + +L R   M   A+Q+QYIMRDE LH  FGI VI Q+  E      
Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQLLEEEHLRLD 242

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
                  + +  EA   E AYA   +    +G +A    +  +FIANRR  Q+ +   F 
Sbjct: 243 P---HAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQFRFIANRRATQLSMPAPFP 299

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
              N  PW+ E  +L+KEKNFFETRVT+YQ G  L W
Sbjct: 300 GATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336


>gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 347

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   +   + + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  D+ 
Sbjct: 7   KSLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L+  ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DYRN---LSAAEREAFDKILSFLVFLDSIQTANL-PCIGQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R+      K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSPVE------RDRILYQWKEDGHLLKRNTFIGNLYNEFQERKDDITL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    ML E    EI +    +     GL       Y++++ N R   
Sbjct: 237 KEEPGLFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTG 296

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++          W+++  +    + +FFE + T Y + A +  D
Sbjct: 297 LGFEPLYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAIIDD 346


>gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 158/251 (62%), Positives = 202/251 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE
Sbjct: 127 DTALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT + D+
Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN
Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306

Query: 244 QIKIENPHLWT 254
           QIKIENPHLW 
Sbjct: 307 QIKIENPHLWD 317


>gi|227541|prf||1706181A ribonucleotide reductase
          Length = 290

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 28/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   
Sbjct: 1   SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQT 168
           E R +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+WAL++   
Sbjct: 58  EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-- 115

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                         +    +  V +   EG++F   FA I  L +   M G+    + I 
Sbjct: 116 -----------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 164

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   +         HL  K  +++ R ++  A  +E  +  E +P   +G+N
Sbjct: 165 RDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMN 217

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
               +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   
Sbjct: 218 CTLMKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGV 275

Query: 349 LK 350
           + 
Sbjct: 276 MS 277


>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
 gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
          Length = 342

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 13/326 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DLA       L+  E+ ++ R + FFA+ +
Sbjct: 22  LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLAD---LAKLSPAEQHLVSRLVAFFATGD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE    E F    
Sbjct: 79  TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 139 NIPSIARKAEFCFKWIDSIF-ELRELKTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  E +Q+ R ML EA  
Sbjct: 198 LRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQVRDMLAEAVD 257

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + + +G  G+      QY+Q +A+RR   +G+ P++  T NPF +M E+ D++
Sbjct: 258 CEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYGST-NPFAFM-ELQDVQ 315

Query: 331 KEKNFFETRVTEYQQG----AELKWD 352
           +  NFFE RV+ YQ G         D
Sbjct: 316 ELSNFFERRVSAYQVGVTGTVAFDDD 341


>gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 360

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 124/318 (38%), Positives = 196/318 (61%), Gaps = 2/318 (0%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
             +LPLKY WA++ Y +  NNHW P ++PMQ D+ LW+S + L+D ER +IK  +G+F++
Sbjct: 37  FNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSA 95

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           +E +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG++  E   M+ +
Sbjct: 96  AEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFED 155

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           + +I  K  + +  ++ L      T T D  Q F +++F+F    EG  FY  F  +LSL
Sbjct: 156 IDTIERKTAFVVNNSRGLRRDMDLTTTAD-KQAFTKNMFLFGQCMEGTQFYGLFGMVLSL 214

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NK  GI + ++Y +RDES H+    ++I  +  EN  +WT EF+++ R ++ EA  L
Sbjct: 215 YRQNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELRDLMREAVTL 274

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   VGL+A    QY+ +IA+RR   +GL PL    +NPFPW++E++D+KK
Sbjct: 275 EKDFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPWLAEMMDIKK 334

Query: 332 EKNFFETRVTEYQQGAEL 349
           E+NFFE RVTEYQ+ + L
Sbjct: 335 EQNFFEGRVTEYQKASAL 352


>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 339

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 99/320 (30%), Positives = 169/320 (52%), Gaps = 9/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y   +E Y SA  N W   EV    D+        +TD ER +++R + FFA+ +
Sbjct: 19  LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGD---LRKMTDAERHLVQRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +YRH++ PE R YL RQ +EEA+H   +  ++ +   D  +    F    
Sbjct: 76  SIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++ +++  ++ S      T+   + FL +L  F    EG++F+  FA +  
Sbjct: 136 NIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVYF 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F  +V++  + E P L+     +    M+ EA  
Sbjct: 195 LRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDEAIA 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  G++A    +Y++F A++R   +G+   +   +NPF +M  + D++
Sbjct: 255 CEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGMPKRYG-AKNPFSFMD-LQDVQ 312

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE RV+ YQ G   +
Sbjct: 313 EVTNFFERRVSAYQVGVSGE 332


>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces jumonjinensis]
          Length = 322

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 166/310 (53%), Gaps = 9/310 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+        LT  E+ +I R + FFA+ +
Sbjct: 19  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLTPGEQHLIGRLVAFFATGD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F    
Sbjct: 76  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++          D  + FL +L  F    EG++FY  FA +  
Sbjct: 136 NIPSIREKAQFCFKWMDSVEKIDQLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA  
Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQEAVE 254

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 255 AELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 312

Query: 331 KEKNFFETRV 340
           +  NFFE R 
Sbjct: 313 ELTNFFERRP 322


>gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           mustelae 12198]
 gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           mustelae 12198]
          Length = 344

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 174/346 (50%), Gaps = 13/346 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   E   +V+D+++     + +  L  +KY WA++ + +   N W P EV M +D  
Sbjct: 9   KKIYNPESIESVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDKR 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   LT  E+L   R L      +SL  NN++  +  ++++PE    L+RQA+EEA+
Sbjct: 69  DYNNL--LTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEAL 126

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++M+R    + +K ++       L+         +  +  +
Sbjct: 127 HSQSYAVMVESISANTDEIYDMWRVDMQLKSKNDYIANVYMKLAQ--------NPTERNI 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GFA   +L    KM+G ++  ++I RDE  HL    ++I  +K
Sbjct: 179 VKAMFANQILEGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQNMIRTLK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+ K+ +++   M   A  +E A+         +GL      QY+Q++A++R  +
Sbjct: 239 KERPDLFDKDLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLADQRLSK 298

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKW 351
           +G+  L+   E+P  W+ +     ++  NFFE +VT Y +G+ +  
Sbjct: 299 VGMPKLYNV-EHPIKWVEQYASFNEQRTNFFEAKVTNYAKGSLIDD 343


>gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 344

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +   KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L  DER    + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYK---KLLPDERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     + ++  L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP  +T + + + R M+H     EI + H  +     G+N    E Y++++ N+R  +
Sbjct: 236 SENPESFTADLKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGLEPLF  Y ENP  W+  V +    + +FFE + T Y + + L  D
Sbjct: 296 IGLEPLFSGYEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343


>gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
 gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
          Length = 347

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E  ++V ++RM+N  + ++N    ++Y W  + Y  A NN W+P E+ +  D +
Sbjct: 7   KPLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDKS 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L++ ER    + L F    +SL + N+   I ++++  E    L  Q F+E +
Sbjct: 67  DY---PKLSEAERRAYDKILSFLVYLDSLQSANL-PNISQYVTANEVNLCLSIQTFQECI 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +    +   ++  
Sbjct: 123 HSQSYSYMLDTICNPTE------RNDILYQWKTDEHLLRRNEFIGNLYNEFVEKQSKDSF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL F  +++ ++K
Sbjct: 177 LRVCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+ +    +   M+ +    EIA+    +     GLN    E Y++++ N R   
Sbjct: 237 KEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYRS 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL  L++ Y + P    W+S+  D    + +FFE R T Y +   ++ D
Sbjct: 297 LGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346


>gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 351

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      +    ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+ 
Sbjct: 11  KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+EAV
Sbjct: 71  DYR---KLSGPEKTAYDKILSFLIFLDSIQTANL-PNVGQYVTANEVNLCLTIQAFQEAV 126

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +     D      
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +  R M+ E    EIA+ +  +     GLN+     Y+Q++ N RC  
Sbjct: 241 KEEPQLFTPQNVELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P++  + E P    W+S+  +    + +FFE + T Y + + +  D
Sbjct: 301 LGFAPIYDGHKEEPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
          Length = 350

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL 
Sbjct: 10  KPLFNEHGDTETAKKRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDLK 69

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   + L   ER    + L F    +S+   N+   +  +++  E    L  Q F+EAV
Sbjct: 70  DY---SKLLPAERTAYDKILSFLIFLDSIQTANL-PNVSEYITASEVNLCLNIQTFQEAV 125

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R+      K +  L          +     D      
Sbjct: 126 HSQSYSYMLDTICSPEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQF 179

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL     ++ ++K
Sbjct: 180 MKVLVANYILEGIYFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLELK 239

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P ++T +     R M+ +    EI +    +     GL +     Y++++ N R   
Sbjct: 240 KEAPEMFTPDKVDVYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTTS 299

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G +PL+  Y + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 300 LGFDPLYDGYDKEPPSMSWVSQYSNANMIKTDFFEARSTAYAKSSALIDD 349


>gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
          Length = 340

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 173/347 (49%), Gaps = 15/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   NV+D+++     + + +L  +KY WA+  +    NN W P EV M  D+ 
Sbjct: 4   KQIYNPDSTENVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDVN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    LTD E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEEA+
Sbjct: 64  DYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEAL 120

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++++R    +  K +      Q L+        K+      
Sbjct: 121 HSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELA--------KNPTDSNF 172

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLR 232

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E +     M  EA  LE  +         +GL     EQY+Q++A+ R + 
Sbjct: 233 KERPDLFTDELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRLNS 292

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +G + L+  + NP  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 293 VGFDKLYNVS-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LSFD 337


>gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
          Length = 348

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 172/347 (49%), Gaps = 13/347 (3%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N     I   E + +V D+++     + +  L  +KY WA+  + +   N W P EV +
Sbjct: 7   QNIERKKIYNPESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNL 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +    GLT  E+    R L      +SL  NN++  +  ++++PE    L+RQA
Sbjct: 67  NGDKRDYAD--GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQA 124

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+HS ++  ++ S+  +  E++ M+R    + +K +        L         K  
Sbjct: 125 FEEALHSQSYAVMVESISANTDEIYEMWRVDMQLRSKNDHIANVYIELG--------KQP 176

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
            ++ L        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL     +
Sbjct: 177 TEQNLLKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQM 236

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           IN ++ E PHL+T   +++   M  +A  +E  +         +GL A    +Y+Q++A+
Sbjct: 237 INALRKEQPHLFTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLAD 296

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347
            R   +GL  ++ +++NP  W+ +      ++ NFFE +VT Y +G+
Sbjct: 297 MRLRAVGLREIY-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS 342


>gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus]
          Length = 321

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DL+ WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  I  K+ WA ++                 +    +  + +   EG
Sbjct: 119 TKEKEYLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 EIITIIIKEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSIN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
 gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
          Length = 368

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +    V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D   
Sbjct: 29  PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDRKD 88

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L+  ER    + L F    +S+   N+  A+  +++  E    L  Q F+EAVH
Sbjct: 89  Y---PLLSPQERRAYDKILSFLVFLDSIQTANL-PALGEYVTANEINLCLSIQTFQEAVH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +       R       K++  L    T     +    KD       
Sbjct: 145 SQSYSYMLDTICEPQT------RNDVLYQWKSDPRLLARNTFIGDLYNEFQKDKSPYAFM 198

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   + EG++FY+GF    +LGR +KM G +++ +YI RDE+ HL    ++I +++ 
Sbjct: 199 KTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILELEK 258

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+++E  +  RTM+ E    EIA+    +     GL       Y+ ++ N RC  +
Sbjct: 259 EEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCASL 318

Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G   +++ + + P    W+++  +    + +FFE + T Y + + L  D
Sbjct: 319 GWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSALLDD 367


>gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 346

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      + +  +R++N  + ++N    +KY W    Y +A NN W+P E+ +  D+ 
Sbjct: 6   KALFNEHGDIELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDVK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   +  +++  E    L  QAF+EAV
Sbjct: 66  DYR---ILSKAEKTAYDKILSFLIFLDSIQTANL-PNVGEYITANEVNLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       + +  L          +         + L
Sbjct: 122 HSQSYSYMLDTICSPEE------RTSILYQWRDDEHLLRRNKFIGDIYNDFQLHKTPDQL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 176 ARTMVANYILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELR 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E + +   M+ E  L EIA+    +     GL +     Y+ ++AN R   
Sbjct: 236 REQPELFTPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSAN 295

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL  +F  + E P    W+S+  +    + +FFE + + Y + A ++ D
Sbjct: 296 LGLGVIFPGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345


>gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor]
          Length = 321

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISS 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  I  K+ WA ++                 +    +  + +   EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              + +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIIKIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
 gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
          Length = 346

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +   +V  + M+   + ++N    +KY W  + Y  A NN W+P E+ +  D   
Sbjct: 7   PLFNPDGDADVRLRSMVGGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDTKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L + ER    + L F    +S+   N+   +  +++  E    L  Q F+E VH
Sbjct: 67  Y---PHLDEAERTAYDKILSFLIFLDSIQTANL-PNVGEYITANEVNLCLSIQTFQECVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   E       R       K +  L    T     +    +  D     
Sbjct: 123 SQSYSYMLDTICSPEQ------RNEILYQWKTDERLLKRNTFIGGCYNDFQEHKDFFRFM 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K 
Sbjct: 177 KVLIANYILEGIYFYSGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKK 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++T+E       ML E    EI +    +     GL       Y+ ++ N R   +
Sbjct: 237 ERPDMFTEEKVASYAEMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNL 296

Query: 308 GLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              PL+           W+S   +    + +FFE R T Y +   L  D
Sbjct: 297 DFPPLYPGFDTEPEDMAWVSAYSNANMVKTDFFEARSTAYAKSTALVDD 345


>gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus
           prevotii DSM 20548]
 gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM
           20548]
          Length = 352

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +  +++  +R++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEDGDIDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---KLDKHEKKAFDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    ++ D+     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGDQYNEFLENDDEFRFMK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+  E Q   R ML E    EIA+   ++     GLN    E Y++++ N R   +G
Sbjct: 244 REDLFVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           LEPL++ Y E P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 304 LEPLYEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
 gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
          Length = 347

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/354 (24%), Positives = 155/354 (43%), Gaps = 15/354 (4%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    P+        V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ + 
Sbjct: 3   DLVRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  ++    L + E+    + L F    +S+   N+   +  +++  E    L  QAF
Sbjct: 63  QDVKDYR---RLREAEKTAYDKTLSFLIFLDSIQTANL-PNVGEYITANEVNLCLTIQAF 118

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +EAVHS ++ Y++ S+   +       R       K +  L          +       D
Sbjct: 119 QEAVHSQSYSYMLDSICSPQE------RTDILYQWKDDERLLNRNKFIGDLYNDFQTHRD 172

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
              L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I
Sbjct: 173 GRHLMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMI 232

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +++ E P L+T+E  ++ + ML      EI +    +     GL       Y+ ++ N 
Sbjct: 233 LELQKEEPQLFTEELIEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNL 292

Query: 303 RCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           R + +G   L+   EN      W+S   +    + +FFE R + Y + + L  D
Sbjct: 293 RSNSLGFGSLYDGFENEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas
           denitrificans DSM 1251]
 gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 340

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 178/347 (51%), Gaps = 15/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   E   NV+D+R+     + + +L  +KY WA+  +    NN W P EV M  D++
Sbjct: 4   KKIYNPESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVS 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    +TD E+    + L      +SL  NNI+  I  ++++PE    L+RQA+EEA+
Sbjct: 64  DYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEAL 120

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +  E++ ++R    +  K +   +  + LS        K+  +   
Sbjct: 121 HSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELS--------KNPTEHNF 172

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GFA I +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 173 VKACFANQILEGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINSLR 232

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+ ++ +++   M  EA  LE+A+         +GL     EQY+Q++A+ R   
Sbjct: 233 KERPDLFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRLTS 292

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +G   L+  T NP  W+ +      ++ NFFE  V  Y +G+ L +D
Sbjct: 293 VGFAKLYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGS-LTFD 337


>gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
 gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
          Length = 347

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E  + V  ++M+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAV
Sbjct: 67  DYK---MLPAAERRAYDKILSFLIFLDSIQTANL-PNIGEYITANEVNLCLSIQTFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +    ++   E L
Sbjct: 123 HSQSYSYMLDTICEPQE------RNAVLYQWKEDRHLLERNEFIGNLYNAFQEEKSPEML 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL     ++ ++K
Sbjct: 177 ACTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +K R+M+ E    EI + H  +     GLN      Y+Q++ N RC  
Sbjct: 237 KEEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           + LEP+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus]
          Length = 321

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  I  K+ WA ++                 +    +  + +   EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
 gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
          Length = 340

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 180/347 (51%), Gaps = 15/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   + + NV+D+++     + + +L  +KY WA+  +    NN W P EV M  D+ 
Sbjct: 4   KNIYNPDSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDVN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K+   LT++E+    + L      +SL  NN++  +  ++++PE    L+RQ+FEEA+
Sbjct: 64  DYKN---LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEAL 120

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++++R    +  K +   +  Q L++        +  +   
Sbjct: 121 HSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAA--------NPTEHNF 172

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLR 232

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T + +++   M  EA  LE  +         +GL     EQY++F+A+ R   
Sbjct: 233 KERPDLFTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLTA 292

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +G E L+  T NP  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 293 VGFEKLYNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LTFD 337


>gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 344

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 13/352 (3%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
                P+        +  KR++N  + ++N    +KY W  + Y    NN W+P EV + 
Sbjct: 2   TINKKPLFNELGDREISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLS 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  +++   L ++ER+   + L F    +S+   N+   I  +++  E    L  Q+F
Sbjct: 62  QDLKDYQN---LLEEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEINLCLTIQSF 117

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +EAVHS ++ Y++ S+   E       R       K +  L          +    ++  
Sbjct: 118 QEAVHSQSYSYMLDSICSPEK------RNEILYQWKDDDILLKRNKFIGDLYNEFIENPT 171

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I
Sbjct: 172 EYNLLRTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNII 231

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +++ ENP L+T+E + + R M+      EI + H  +     G+N    E Y++++ N+
Sbjct: 232 KELQNENPELFTEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNK 291

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           R  +I L PLF +  +NP  W+  + +    + +FFE R T Y +   L  D
Sbjct: 292 RLKEINLSPLFKEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTLIDD 343


>gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 340

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 100/320 (31%), Positives = 173/320 (54%), Gaps = 8/320 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ +     N W   EV  Q DL   K +  L+  E  +I+R + FFA+ +
Sbjct: 19  LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATGD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150
           S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH   +  ++ +   D            
Sbjct: 77  SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI+ KA++ +++  ++        T++  ++FL +L  F    EG++F+  FA +  
Sbjct: 137 NIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVYF 195

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES HL F  +V+N ++ + P LW  + +     MLHEA  
Sbjct: 196 LRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAVD 255

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+     QY+ ++A+ R  ++G+ P F   +NPF +M E+ D++
Sbjct: 256 AETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFGV-KNPFSFM-ELQDVQ 313

Query: 331 KEKNFFETRVTEYQQGAELK 350
           +  NFFE RV+ YQ     +
Sbjct: 314 ELTNFFERRVSAYQTAVAGE 333


>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
 gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
          Length = 350

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 102/324 (31%), Positives = 181/324 (55%), Gaps = 11/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++++  A  N W   EV +  DL        L+  ER ++ R + FFA+ +
Sbjct: 30  LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGD---LAKLSSAERHLVSRLVAFFATGD 86

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150
           ++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   +E E F  +    
Sbjct: 87  TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 147 NIPSIARKAEFCFRWIDSIF-ELRELRTQADRRAFLLNLICFAACIEGLFFYGAFAYVYF 205

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  + +++ + M+ EA  
Sbjct: 206 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQVKEMVAEAVD 265

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +A + + +G  GL+     +Y+Q +A+RR   +G+ P++  + NPF +M E+ D++
Sbjct: 266 CEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPFAFM-ELQDVQ 323

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ G    + +D
Sbjct: 324 ELSNFFERRVSAYQMGVSGSVTFD 347


>gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 347

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+   + ++N    ++YGW  + Y  A NN W+P E+ +  D  
Sbjct: 7   KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDRK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+ + N+   I  +++  E    L  Q F+E V
Sbjct: 67  DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +       D   L
Sbjct: 123 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   
Sbjct: 237 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + ++  Y + P    W+S   +    + +FFE + T Y +   L  D
Sbjct: 297 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 346


>gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 352

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I      +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNENGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---KLDQHEKRAFDRILSFLTYLDSIQTANL-PNLQTYVTANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +     D ++     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDDHLLRRNEFIGEQYNEFLVDDNEFKFVR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 ALIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E     R ML E    EI +    +     GL+    E Y++++ N R   +G
Sbjct: 244 RPDLFTPEATIVYRDMLKEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +PLF+ YTE P    W+ E  D  + + +FFE +VT Y + + ++ D
Sbjct: 304 FDPLFEGYTEIPQSMKWVDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351


>gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis YCH46]
 gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis YCH46]
          Length = 349

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 157/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E       ++M+   + ++N    ++Y W  + Y    NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    ++ D   L
Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   
Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
          Length = 336

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 118/328 (35%), Positives = 188/328 (57%), Gaps = 4/328 (1%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +     +  QL PL+Y WA+        N W P E+P+ DD+  W+    LTDDER 
Sbjct: 10  DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            ++  LGFF   ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +
Sbjct: 68  AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPV 127

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D   +F  +R VP+I AK  +  + T+ L        T +  Q FL++L  +Y+V EG++
Sbjct: 128 DRERVFAAHRNVPAIRAKEAFQQELTRQLLVRP-DVSTLEGRQAFLRNLIGYYIVLEGVF 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GF    +  R N + G+A    ++++DESLHL+FGI +I  +  E+P L T  F ++
Sbjct: 187 FYGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFARE 246

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++  A  LE  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP 
Sbjct: 247 VKGLILRAVELERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPA 305

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            WM+  +D+ +  NFFE R   Y+  A+
Sbjct: 306 KWMATEVDVPEIVNFFEARNIHYEVAAD 333


>gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella
           lenta DSM 2243]
 gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
 gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243]
 gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 347

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +SL + N+  A+  +++  E    L  Q F+E V
Sbjct: 67  DYR---KLPAAERRAYDKILSFLIFLDSLQSANL-PAVGEYITANEVNLCLAIQTFQETV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +     D   E L
Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q
Sbjct: 237 EEEPELFAPELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQ 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
 gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
          Length = 348

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+      P+   E  ++V  +R+LN   +++N    +KY W    Y  A NN W+P E+
Sbjct: 1   MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D + +     L+  ER    + L F    +SL + N+   I  +++  E    L  
Sbjct: 61  NLNQDKSDY---LNLSLAERSAYDKILSFLVYLDSLQSANL-PNIASYVTANEVNLCLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+E +HS ++ Y++ S+   E       R       K +  L    T     +    +
Sbjct: 117 QTFQECIHSQSYSYMLDSICSPEQ------RNEILYQWKYDEHLLKRNTFIGHLYNEFLE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D++    + +   + EG++FY+GF    +L R  KM G  ++ +YI RDE+ HL    
Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +++ +++ E P L+T    Q  + M+HE    EIA+    +     GLN+   E Y++++
Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290

Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +GL  L++ Y E P    W+ +  D    + +FFE RVT Y + + ++ D
Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347


>gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
 gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
          Length = 336

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 190/328 (57%), Gaps = 4/328 (1%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +     +  QL PL+Y WA+        N W P E+P+ DD+  W+    LTDDER 
Sbjct: 10  DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            ++  LGFF   ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +
Sbjct: 68  AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPV 127

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D   +F  +R+VP+I AK  +  + T+ L        T +  Q FL++L  +Y+V EG++
Sbjct: 128 DRERVFAAHRDVPAIRAKEAFQQELTRQLLVRP-DVSTLEGRQAFLRNLIGYYIVLEGVF 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GF    +  R N + G+A    ++++DESLHL+FGI +I  +  E+P L T EF ++
Sbjct: 187 FYGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFARE 246

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++  A  LE  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP 
Sbjct: 247 VKGLILRAVELERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPA 305

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            WM+  +D+ +  NFFE R   Y+  A+
Sbjct: 306 QWMATEVDVPEIVNFFEARNIHYEVAAD 333


>gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
 gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
          Length = 325

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  
Sbjct: 3   EPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+++ +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D
Sbjct: 60  IKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F   R + SI  KA+WAL++                ++    +  + + V EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN--------------NERSFAERLIAFAVVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +         H+  K   
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRN------HIIHKLPY 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++  A  LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309


>gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis 638R]
 gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis 638R]
          Length = 349

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E       ++M+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    ++ D   L
Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   
Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
 gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
          Length = 341

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 176/342 (51%), Gaps = 13/342 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 5   KKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 64

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+
Sbjct: 65  DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++ M+R    + +K ++  +  + L++        +  +  +
Sbjct: 123 HSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLAT--------NPTERNI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF    +L R+ KM+G A+  ++I RDE  HL    ++IN  K
Sbjct: 175 IKAMFANQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSTK 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E+P  +TK+ +++   M  EA  +EIA+         +GL A   ++Y++++A+ R  +
Sbjct: 235 KESPEFFTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRLRR 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           +GL  L+   ++P  W+       + + NFFE  VT Y +G+
Sbjct: 295 VGLPVLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
 gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
          Length = 347

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +SL + N+  A+  +++  E    L  Q F+E V
Sbjct: 67  DYR---KLPASERRAYDKILSFLIFLDSLQSANL-PAVGEYITANEVNLCLAIQTFQETV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L          +     D   E L
Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q
Sbjct: 237 EEEPELFTPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQ 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
 gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 15/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+D+++     + + +L  +KY WA+  +    NN W P EV M  D  
Sbjct: 4   KQIYNPTSTEHVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDAV 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    LT+ E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEEA+
Sbjct: 64  DYKY---LTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEAL 120

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E+++++R+   +  K +        L++        D  +   
Sbjct: 121 HSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELAN--------DPSESAF 172

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTLR 232

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T+E  ++   M  +A  LE A+         +GL     EQY+Q++A++R   
Sbjct: 233 RERSDLFTEELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLTA 292

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +GL+PL+  + +P  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 293 VGLKPLYNVS-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS-LSFD 337


>gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis NCTC 9343]
 gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis NCTC 9343]
          Length = 349

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E       ++M+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTETRFRKMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    ++ D   L
Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   
Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 352

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +  +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEDGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L + E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  RN---LDEHEKRAFDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    K+ D+     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLKNDDEFRFMK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN ++ E
Sbjct: 184 ALVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+TKE ++  R ML E    EIA+    +     GL+    E Y++++ N R   +G
Sbjct: 244 REDLFTKEHKEYYRNMLKEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           LE L++ YTE P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGYTEIPDSMKWVDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351


>gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
 gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
          Length = 349

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 17/356 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           N    + +   E   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+ +
Sbjct: 4   NELKRNALFNPEGDTDLRLRRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINL 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L   ER    + L F    +SL +NN+   I  +++  E    L  QA
Sbjct: 64  AQDTKDY---PRLDKAERAAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQA 119

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           F+E VHS ++ Y++ ++   E       R       K +  L    T     +       
Sbjct: 120 FQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFHDKR 173

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D+  L    V   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++
Sbjct: 174 DKFSLMKTCVANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNI 233

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           + ++K E P ++T E  +    M+ E    EIA+    +     GLN      Y+ ++ N
Sbjct: 234 LQELKKEEPKMFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGN 293

Query: 302 RRCHQIGLEPLFKYT----ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            R H +G   L+       EN   W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 294 LRWHSLGFGYLYDENIQEPEN-MKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor
           sp. SB155-2]
 gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor
           sp. SB155-2]
          Length = 341

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 100/347 (28%), Positives = 177/347 (51%), Gaps = 15/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   E   +V+++++     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 6   KKIYNPESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDAR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    LTD E+L   + L      +SL  NN++  +  +++ PE    L+RQAFEEA+
Sbjct: 66  DYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++ ++RE   +  K ++     + L++        +   E +
Sbjct: 123 HSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELAA--------NPSDENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  + +L R+ KM+G A+  ++I RDE  HL    ++IN +K
Sbjct: 175 VKAMFANQILEGIYFYSGFTYMYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTVK 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE       M   A  LE ++         +GL     EQY++++A+ R  +
Sbjct: 235 KERPELFTKELIDDVYKMFEGAVDLETSWGKYITQGQILGLTDEIIEQYIKYLADDRLKR 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +GLEP++   E+P  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 295 VGLEPMYNV-EHPIKWVDDFSKFNDQKTNFFEGNVTNYSKGS-LDFD 339


>gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           denticola ATCC 35405]
 gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           denticola ATCC 35405]
          Length = 351

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      +    ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+ 
Sbjct: 11  KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+EAV
Sbjct: 71  DYR---KLSIPEKTAYDKILSFLIFLDSIQTANL-PNVGQYVTANEVNLCLTIQAFQEAV 126

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +     D      
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +  R M+ E    EIA+    +     GLN+     Y+Q++ N RC  
Sbjct: 241 KEEPQLFTPQNVELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P++  + E P    W S+  +    + +FFE + T Y + + +  D
Sbjct: 301 LGFAPIYDGHREEPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus]
          Length = 321

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  I  K+ WA ++                 +    +  + +   EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFCGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
 gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
          Length = 359

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+   + ++N    ++YGW    Y  A NN W+P E+ +  D  
Sbjct: 19  KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDRK 78

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+ + N+   I  +++  E    L  Q F+E V
Sbjct: 79  DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 134

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +       D   L
Sbjct: 135 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 188

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K
Sbjct: 189 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 248

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   
Sbjct: 249 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 308

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + ++  Y + P    W+S   +    + +FFE + T Y +   L  D
Sbjct: 309 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 358


>gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 347

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 157/354 (44%), Gaps = 15/354 (4%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    P+        V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ + 
Sbjct: 3   DLLRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  ++    L + E+    + L F    +S+   N+   +  +++  E    L  QAF
Sbjct: 63  QDVKDYR---RLHEAEKTAYDKTLSFLIFLDSIQTANL-PNVGEYVTANEVNLCLTIQAF 118

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +EAVHS ++ Y++ S+   +       R       K +  L          +    +  D
Sbjct: 119 QEAVHSQSYSYMLDSICSPQE------RNDILYQWKDDERLLNRNKFIGDLYNDFQEHKD 172

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
              L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I
Sbjct: 173 GLHLMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMI 232

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +++ E PHL+T+E  Q+ + ML      EI +    +     GL       Y+ ++ N 
Sbjct: 233 LELQKEEPHLFTEELIQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNL 292

Query: 303 RCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           R + +G   L++  E       W+S   +    + +FFE R + Y + + L  D
Sbjct: 293 RSNSLGFGSLYEGFESEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 347

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   +   ++  +RM+    +++N    ++Y W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   NALFNPQGDTDLRLRRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q F+E V
Sbjct: 67  DY---PNLPAAERKAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQTFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +     + D+  L
Sbjct: 123 HSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQANRDKFCL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 MKACVANFILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E       M+ E    EIA+    +     GL       Y++++ N R   
Sbjct: 237 QEEPDLFTPEKVAVYEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWKS 296

Query: 307 IGLEPLFKYTE-NPFP--WMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + LF+  +  P    W+++  +    + +FFE + T Y +   L  D
Sbjct: 297 LGFDYLFEDNQAEPADMQWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 349

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 156/356 (43%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A     + +        +  ++M+   + ++N    ++Y W  + Y  A NN W+P E+ 
Sbjct: 3   AKKLKRNALFNPSGDTEIRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEIN 62

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +     L + ER    + L F    +SL +NN+   I  +++  E    L  Q
Sbjct: 63  LTQDTKDY---PLLDEAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF+E VHS ++ Y++ ++   E       R       K +  L    T     +    + 
Sbjct: 119 AFQECVHSQSYSYMLDTICSPEK------RNDILYQWKTDEHLLKRNTFIGNCYNEFQES 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D   L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     
Sbjct: 173 QDGFTLMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRS 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I ++K E P L+T +  Q    M+ E    EI +    +     GLN      Y+ ++ 
Sbjct: 233 IILELKKEEPELFTPDKVQIYENMMREGVKQEIEWGQYVIGDNIQGLNRQMIADYIHYLG 292

Query: 301 NRRCHQIGLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +G  PL+++  + P    W+ +  +    + +FFE + T Y +   L+ D
Sbjct: 293 NLRWSSLGNPPLYEHNRKEPESMHWVLQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
 gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
          Length = 347

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      ++V+ +RM+N  + ++N    +KYGW    Y  A NN W+P E+ M  D+ 
Sbjct: 7   KALFNEHGDIDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L+  E+    R L F    +S+   N+   +  +++  E    L  QAF+EAV
Sbjct: 67  DYRN---LSGAEKRAYDRTLSFLIFLDSIQTANLPY-VGEYVTANEVNLCLTIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       RE      + +  L          +     +     L
Sbjct: 123 HSQSYSYMLDSICSPEE------RERILYQWRNDEHLLKRNKFIGDIYNEFQLNKSTHQL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 177 LKTMVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E   + R M+ E    E+A+    + +   GL       Y++++AN RC  
Sbjct: 237 KEEPQLFTVEAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCEN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G E L+  Y + P    W+++  +    + +FFE + + Y +   +  D
Sbjct: 297 LGFEILYPGYEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSIIDD 346


>gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 348

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +   +   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+
Sbjct: 1   MDNKLKKNALFNPQGDTDLRQRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL + N+  ++   ++  E    L  
Sbjct: 61  NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANL-PSLTEFITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ ++   E       R       K +  L    T     +     
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 NNDKASLMKTLIANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I+++K E P  +T E  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKLYEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   LF+   E P    W+S+  +    + +FFE + T Y +   ++ D
Sbjct: 291 GNMRWRSLGFGNLFEDNIEEPENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
 gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
          Length = 408

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  + + +L    +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 88  VEEEYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       + + E R +   Q   E VH  T+  +I 
Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLID 204

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E    F   + VP I  KA+WA+++              D       +    +
Sbjct: 205 KYIKDGAEKKQLFEAIQTVPCIQKKADWAMKW-------------FDTKSRSFAERLFAF 251

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++I      
Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRI------ 305

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K   +   +++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+ P++
Sbjct: 306 -KPTTETIHSIVKEAVEIEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIW 364

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y +  +   +
Sbjct: 365 N-SKNPFDFM-ENISLDGKTNFFEKRVGDYGKMDDTSDE 401


>gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 99B1]
          Length = 325

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  
Sbjct: 3   EPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+++ +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D
Sbjct: 60  IKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    F   R + SI  KA+WAL++                ++    +  + + V EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN--------------NERSFAERLIAFAVVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +         H+  K   
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRN------HIIHKLPY 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++  A  LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309


>gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
 gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
          Length = 353

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A N    P+      ++V  ++M+N  + ++N    +KY WA + Y  A NN W+P E+ 
Sbjct: 7   AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  ++    L+  E+    + L F    +S+   N+   I  +++  E    L  Q
Sbjct: 67  LNQDVKDYR---KLSKAEKDAYDKTLSFLIFLDSIQTANL-PNIGEYITANEVNLCLTIQ 122

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF+EAVHS ++ Y++ S+   +       R       K +  L          +    + 
Sbjct: 123 AFQEAVHSQSYSYMLDSICSPQE------RNAILYQWKDDPHLLARNKFIGDLYNDFMEH 176

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D E L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     
Sbjct: 177 RDGEHLIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRS 236

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           ++ ++K E P L+T E  +  + ML      E+ +A   + +   GL       Y+ ++ 
Sbjct: 237 ILLELKKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHYLG 296

Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           N R + +G   L+  Y + P    W+S   +    + +FFE + T Y + + L  D
Sbjct: 297 NLRSNALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSALVDD 352


>gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes
           bacterium D7]
 gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. D7]
          Length = 346

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   +  ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 6   KALFNAKGDIDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L++ ER    + L F    +SL   N+   I  +++  E    L  QAF+EAV
Sbjct: 66  DYR---LLSEAERTAYDKILSFLVFLDSLQTANL-PNIGEYITANEINLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R+      K +  L          +    +  D   L
Sbjct: 122 HSQSYSYMLDSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 MKTIMANYILEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  R ML      EIA+    +     GL       Y+ ++ N R   
Sbjct: 236 KEEPTLFTPEKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFS 295

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +  EPL++  E       W+S   +    + +FFE + T Y + + ++ D
Sbjct: 296 LNFEPLYEGFETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345


>gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
 gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
          Length = 408

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  + + +L    +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 88  VGEEYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I 
Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 204

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E    F   + VP I  KA WA+++              D       +    +
Sbjct: 205 KYIKDGSEKKQLFEAIQTVPCIEKKAKWAMKW-------------FDTKSRSFAERLFAF 251

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 304

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +   +    ++ EA  +E  +  + +P   +G+N+    +Y++++++R   Q+G+ P++
Sbjct: 305 NRPTTETIHAIVKEAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIW 364

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 365 N-AKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 398


>gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
 gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 325

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 30/331 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + + +L+ + +   LLP+KY   W+ Y  A ++ W   EV +  D+  W     L   E
Sbjct: 5   EETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDW---GKLNAKE 61

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V      +   E R +   Q   E +HS  +  +I + 
Sbjct: 62  RHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTY 121

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    F+  R +PS+  KA+WA+++ +  +S                   V +  
Sbjct: 122 IRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSD-------------FATRLVAFAC 168

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH  F   +   +K +       
Sbjct: 169 VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKK------- 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
               + + ++ +A  +E  +  E++P   +G+N     +Y++F+A+R    +G E ++  
Sbjct: 222 --CNRIKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNA 279

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           T NPF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 280 T-NPFDFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
 gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           D4]
 gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           dorei 5_1_36/D4]
 gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
          Length = 349

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    +  D   L
Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   
Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSS 298

Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
 gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
          Length = 348

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 159/357 (44%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M +    + +      V++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MEDKLKRNTLFNPSGDVDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T+E  +    M+ E    EIA+    +     GLN+     Y++++
Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE R T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPENMKWVGQYSNANMVKTDFFEARSTAYAKSTALIDD 347


>gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
 gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
          Length = 346

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/316 (31%), Positives = 171/316 (54%), Gaps = 8/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   ++ +     N W   EV  Q DL   K +  LT  E   I+R + FFA+ +
Sbjct: 25  LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATGD 82

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   +  E    F    
Sbjct: 83  SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAVE 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI+ KA++ +++  ++        TK+  ++FL +L  F    EG++F+  FA +  
Sbjct: 143 NIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAYVYF 201

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDES HL F  +V+  ++ + P LW  E +++   M+ EA  
Sbjct: 202 FRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEEAID 261

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E  +A + +  G  GL+     QY+ ++A+ R  ++G+   F   +NPF +M E+ D++
Sbjct: 262 AEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQDVQ 319

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ  
Sbjct: 320 ELTNFFERRVSAYQTA 335


>gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus
           NW-LW]
          Length = 321

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L+++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLSNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  I  K+ WA ++                 +    +  + +   EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 EIITIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           vulgatus ATCC 8482]
 gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
 gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           vulgatus ATCC 8482]
 gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
          Length = 349

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    +  D   L
Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDGHLLKRNTFIGNCYNEFQESQDGFTL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   
Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSS 298

Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
 gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
          Length = 323

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+++   W  Y  A  + W   EV +  D+A W+    L+ DE+  
Sbjct: 4   EPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWE---RLSADEKKF 60

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS T+  +I +   D
Sbjct: 61  ISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKD 120

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+  +    I  KA+WAL++   ++SP                  V +   EG
Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSP-------------FAHRLVAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   + G+    + I RDE LH +F   +  +I         K  +
Sbjct: 168 IFFSGSFASIFWLKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKI-------VDKPSR 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E+ +  + +P   +G+N     QY++++A+    ++G E L+ +T N
Sbjct: 221 EIVCEIVDEAVTIELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTIN 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M E I +  + NFFE RV+EYQ+   +  
Sbjct: 280 PFDFM-ENISIDGKTNFFEKRVSEYQRSGVMAD 311


>gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
 gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
          Length = 349

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
            +     P+   E  ++V ++R++N  + ++N    +KY W  + Y  A NN W+P E+ 
Sbjct: 3   TDQINRKPLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEIN 62

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D + +     L+  E+    + L F    +SL + N+   I ++++  E    L  Q
Sbjct: 63  LNQDKSDY---PRLSLAEKTAYDKILSFLVYLDSLQSANL-PNISQYITANEVNLCLSIQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            F+E +HS ++ Y++ S+   E       R       K +  L          +      
Sbjct: 119 TFQECIHSQSYSYMLDSICSPEQ------RNDILYQWKTDEHLLKRNEFIGELYNEFVAK 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++    + +   + EG++FY+GF    +L R  KM G  ++ +YI RDES HL    +
Sbjct: 173 QDKQSFLRVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRN 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           ++ +++ E P L+T E  Q  R M++     EIA+ H  +     GLN      Y++++ 
Sbjct: 233 ILVELQKEEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLG 292

Query: 301 NRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +G   L+ +Y E P    W+ +  D    + +FFE R + Y +   ++ D
Sbjct: 293 NTRFATLGFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348


>gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
 gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
          Length = 346

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 6   KALFNASGDIDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDIK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L + E+    + L F    +SL   N+   +  +++  E    L  QAF+EAV
Sbjct: 66  DYR---LLNEHEKTAYDKILSFLVFLDSLQTANL-PNVGEYITANEINLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R+      K +  L          +    +  D    
Sbjct: 122 HSQSYSYMLDSICSPIE------RDEILYQWKYDEHLLKRNEFIGEQYNAFLEHKDSFHF 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 MKTVIANYILEGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +  R M+      EIA+    +     GL       Y+ ++ N R   
Sbjct: 236 KEEPDLFTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQA 295

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +  EPLF+          W+S   +    + +FFE R + Y + + L+ D
Sbjct: 296 LNFEPLFEDYMQEPESMKWVSIYSNANDIKTDFFEARSSAYAKSSALEDD 345


>gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
           NBC37-1]
 gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 339

 Score =  286 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/347 (29%), Positives = 171/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   E      D+++     + + +L  +KY WA+  +    NN W P EV M  D+ 
Sbjct: 4   KKIYNPESEERTSDRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    LTD E+    + L      +SL  NNI+  +   ++ PE    L+RQAFEEA+
Sbjct: 64  DYK---RLTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFEEAL 120

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++ ++R    + +K +   +  + LS        ++   E +
Sbjct: 121 HSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELS--------ENPTDENI 172

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  + +L R++KM+G A+  ++I RDE  HL    ++IN  K
Sbjct: 173 VKAMFANQILEGIYFYSGFTYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINATK 232

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE       M  +A  LE  +         +GL     EQY+Q++A++R H 
Sbjct: 233 RERPELFTKELIDDVYQMFRDAVKLECEWGTYITQGQILGLTNEIIEQYIQYLADKRLHA 292

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +GLE ++   E+P  W+        ++ NFFE  VT Y +G+    D
Sbjct: 293 VGLEKIYNV-EHPIKWVDNFSQFNDQKTNFFEGNVTNYSKGSLDLDD 338


>gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
 gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
          Length = 347

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 171/346 (49%), Gaps = 14/346 (4%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + G   I   +      D+R+     + +  L  +KY WA + + +  +N W P EV M 
Sbjct: 8   SLGRKKIYNPQSAEPAKDRRIFGGNPTGMFDLNQIKYQWAHKIWKTMLHNTWFPEEVSMH 67

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E++   R L      +SL  NN++  I   +++PE    L+RQA+
Sbjct: 68  GDKTHY---LKLSTQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+HSH++  ++ S+  +  E++ M+R   ++  K +   Q    L+            
Sbjct: 125 EEALHSHSYAVMVESISANSDEIYEMWRTDEALKNKNDCVAQVYMDLA--------HTQT 176

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +  L    V   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL     +I
Sbjct: 177 ERNLLKALVANQILEGIYFYSGFSFFYALARSGKMLGSAQMIRFIQRDEVTHLALFQSMI 236

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           + +K E P L++K+  ++   M  EA  LE  +         + LN  +   Y++++A+ 
Sbjct: 237 HTLKKERPDLFSKDLVEEILEMFKEAVDLESTWGRVITQGEILDLNPVTLRAYIEYLADT 296

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
           R H IGL  ++ +T++P  W+ +      +  NFFE RV+ Y +G+
Sbjct: 297 RLHAIGLPKIY-HTKHPMRWVDQFSSFNSQRSNFFEARVSNYSKGS 341


>gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 349

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    +  D   L
Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   
Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSS 298

Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
          Length = 347

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 156/355 (43%), Gaps = 15/355 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                + +   +   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +
Sbjct: 2   EQLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINL 61

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q 
Sbjct: 62  AQDIKDY---PNLPPAERKAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQT 117

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           F+E VHS ++ Y++ S+   E       R       K +  L    T     +       
Sbjct: 118 FQECVHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQAHR 171

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           ++  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++
Sbjct: 172 NKFCLMKACIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNM 231

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           I ++K E P L+T E       M+ E    EIA+    +     GL       Y++++ N
Sbjct: 232 IIELKQEEPELFTPEKVAIYEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGN 291

Query: 302 RRCHQIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            R   +G + LF+  +  P    W+++  +    + +FFE + T Y +   L  D
Sbjct: 292 LRWKSLGFDYLFEDNQTEPTDMEWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella
           succinogenes DSM 1740]
          Length = 341

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 92/342 (26%), Positives = 171/342 (50%), Gaps = 13/342 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +    V+++++     + + +L  +KY WA+  +     N W P EV M  D  
Sbjct: 5   KKIYNPQSTETVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDKR 64

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQAFEEA+
Sbjct: 65  DYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ S+  +  E++ M+R    + +K +      + L+        K+     +
Sbjct: 123 HSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KNPTDSAM 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN +K
Sbjct: 175 LKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALK 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TK  +++   M  +A  +E A+         +GL +    +Y+Q++A+ R  +
Sbjct: 235 KERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKR 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           +G+  L+   ++P  W+ +     + + NFFE  VT Y +G+
Sbjct: 295 VGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 335


>gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 243

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 153/243 (62%), Positives = 192/243 (79%)

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++
Sbjct: 1   NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S P F TGT D D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R
Sbjct: 61  SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA
Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L
Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240

Query: 350 KWD 352
            WD
Sbjct: 241 SWD 243


>gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 347

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +       ++  +RM+   + ++N    +KY WA + Y  A NN W+P E+ +  D  
Sbjct: 7   NSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDTK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+  ++  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLDKAERTAYDKILSFLVFLDSLQSNNL-PSLCEYITANEVNLCLHIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSPEQ------RNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYAL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 MKTCIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P ++T E  +    M+ E    EIA+    +     GLNA     Y+ ++ N R H 
Sbjct: 237 KEEPEMFTPEKVKVYEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWHS 296

Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + L++   + P    W+++  D    + +FFE + T Y +   ++ D
Sbjct: 297 LGFDYLYEDNQKEPEDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346


>gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
 gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
          Length = 339

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 166/349 (47%), Gaps = 15/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   + + ++ D+R+     D +     +KY WA   + +   N W P EV M  D
Sbjct: 2   ARKTIYNPDSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +K    LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EE
Sbjct: 62  AKDYKY---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEE 118

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ S+  +  E+++M++    +  K N+       LS         +   E
Sbjct: 119 ANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD--------NITDE 170

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN 
Sbjct: 171 KMVLAMFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQNMINS 230

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            + E P L+T E + K R M  +A  LE A+         +G       QY+Q++A++R 
Sbjct: 231 TRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYLADKRL 290

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +G +P +   ++P PW+        +  NFFE  V  Y +G+ + +D
Sbjct: 291 DAVGYKPEYNV-KHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGS-IDFD 337


>gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos
           taurus]
 gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos
           taurus]
 gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus]
          Length = 341

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 29/299 (9%)

Query: 56  PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           P+E V +  D+  W+    L  +ER  I   L FFA+S+ +V  N+V    + +   E R
Sbjct: 55  PSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 111

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+WAL++      
Sbjct: 112 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI----- 166

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                           +  V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 167 --------GDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 218

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +         HL  K  +Q+ + ++  A  +E  +  E +P   +G+N   
Sbjct: 219 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 271

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 272 MKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 328


>gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus]
          Length = 338

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 29/299 (9%)

Query: 56  PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           P+E V +  D+  W+    L  +ER  I   L FFA+S+ +V  N+V    + +   E R
Sbjct: 52  PSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 108

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +   D  E    FN    +P +  KA+WAL++      
Sbjct: 109 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI----- 163

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                           +  V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 164 --------GDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 215

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +         HL  K  +Q+ + ++  A  +E  +  E +P   +G+N   
Sbjct: 216 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 268

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 269 MKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 325


>gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 348

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +      + +  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNQLKRNTLFNPSGDIELRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQD---FKDYPRLEKAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T E  +    M+ E    EIA+    +     GLNA     Y++++
Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALIDD 347


>gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 352

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +  +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEDGDIDLGKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---KLDQYEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    ++ D+     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLENDDEFRFMK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+  E Q   R ML E    EIA+    +     GLN    E Y++++ N R   +G
Sbjct: 244 REDLFVPELQNYYRNMLKEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           LE L++   E P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGFDEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 347

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 161/351 (45%), Gaps = 17/351 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +       ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D  
Sbjct: 7   NALFNPMGDTDLRLRRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL + N+  ++  +++  E    L  QAF+E V
Sbjct: 67  DY---PKLDKAERTAYDKILSFLVFLDSLQSTNL-PSLTEYVTANEVNLCLHIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +    +  D+  L
Sbjct: 123 HSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDLYNEFHEKRDRYTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 VKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIQELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +       M+ E    EIA+    +     GLNA   + Y++++ N R H 
Sbjct: 237 KEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYLGNLRWHS 296

Query: 307 IGLEPLFKYT----ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + L++      EN   W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 297 LGFDYLYEDNRTEPEN-MRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella
           virus 1]
 gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to
           tobacco RR small subunit, corresponds to Swiss-Prot
           Accession Number P49730 [Paramecium bursaria Chlorella
           virus 1]
          Length = 324

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/336 (28%), Positives = 163/336 (48%), Gaps = 29/336 (8%)

Query: 19  VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            + + +L           P++Y   W+ Y  A    W   EVP+  D+  W+    L DD
Sbjct: 2   ANQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  LGFFA S+ +V  N+       ++ PE RQ+   Q F E++HS  +  +I +
Sbjct: 60  ERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDA 119

Query: 138 LGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           L  DE    ELF+    +P++  KA WA ++ +                +   +  V +V
Sbjct: 120 LISDEQERNELFDAIENIPAVHNKAKWAQKWLE--------------PGKSFAERLVAWV 165

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG+ F   F  I  L     M G+    ++I RDE LH  FG  + ++++ + P    
Sbjct: 166 CVEGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLP---- 221

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               +  + ++ EA   E  +  + +P   +G+NA    QY++F+A+R    +G E ++ 
Sbjct: 222 ---FETVKQIITEAVENEKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN 278

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE RV++YQ+   +K
Sbjct: 279 -SKNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312


>gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
 gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
          Length = 347

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 15/355 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           N    + +        +  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +
Sbjct: 2   NKLKRNALFNPSGDTEILHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINL 61

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L   ER+   + L F    +SL +NN+   +  +++  E    L  QA
Sbjct: 62  TQDTKDY---PLLDKAERVAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQA 117

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           F+E VHS ++ Y++ S+   E       R       K +  L    T     +    +  
Sbjct: 118 FQECVHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQ 171

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           +   L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++
Sbjct: 172 NGFALVKTLIANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNI 231

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           I ++K E P L+  +  +    M+ E    EIA+    +     GL+    E Y+ ++ N
Sbjct: 232 ILELKKEEPELFVPDKVKVYEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGN 291

Query: 302 RRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            R   +G  PL++  +       W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 292 LRWKSLGYAPLYEDNQTEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
 gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
          Length = 348

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+ +     +   +   +V  +RM+N  + ++N    LKYGW  + Y  A NN W+P E+
Sbjct: 1   MSESLKRKALFNAQGDTDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  +     L    +  + + L F    +S+   N+   I   ++  E    L  
Sbjct: 61  NLGQDLKDY---PKLEPAVKTALDKTLSFLIFLDSIQTANL-PNIGEVITANEINLCLTI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+EAVHS ++ Y++ S    +       R       K +  L          +    +
Sbjct: 117 QAFQEAVHSQSYSYMLDSFCSPDQ------RTEILYQWKEDPRLLKRNEFIGGLYNEFIE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                 L    +   + EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL    
Sbjct: 171 QRTPVQLMKTLIANYILEGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I +++ E P L+T E +Q  R ML +    EI +    +     GLN      Y++++
Sbjct: 231 SMILELRKEEPQLFTPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   I LE L+   E       W+S+  +    + +FFE R + Y + + LK D
Sbjct: 291 GNLRAKAIHLEILYPGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347


>gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 344

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 164/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +   KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L  +ER    + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYK---KLLPEERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     + ++  L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP  +T + + + + M+      EI + H  +     G+N    E Y++++ N+R  +
Sbjct: 236 SENPESFTTDLKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295

Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGL  LF+   ENP  W+  V +    + +FFE + T Y + + L  D
Sbjct: 296 IGLGMLFEGFEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343


>gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor
           alocis ATCC 35896]
          Length = 348

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +      + +  +RM+N  + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MVEEIKRKQLFNENGDIELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  +++   L  +E+    + L F    +SL   N+   +   ++  E    L  
Sbjct: 61  NLTQDIKDYRN---LEIEEKEAYDKILSFLIFLDSLQTANL-PNVGEFITANEVNLCLTI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QA++EA+HS ++ YI+ S+   E       R       K +  L          +     
Sbjct: 117 QAYQEAIHSQSYGYILDSICSPEE------RTEILYQWKDDPFLLARNKFIGDQYNDFYY 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  +  L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    
Sbjct: 171 NRTKYNLVKTVIANYILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P L+T E  +  R M+ +    EI +A+  +     GL     E Y++++
Sbjct: 231 SIILELKKEEPELFTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYL 290

Query: 300 ANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N RC  +G EP+++          W+SE  D    + +FFE +V+ Y + + ++ D
Sbjct: 291 GNLRCRGLGFEPIYEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347


>gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 348

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 161/357 (45%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +   +   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+
Sbjct: 1   MDNKLKKNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL + N+  ++   ++  E    L  
Sbjct: 61  NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANL-PSLTEFITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ ++   E       R       K +  L    T     +     
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 NNDKASLMKTLMANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I+++K E P  +T E  +    M+ E    EIA+    +     GLNA     Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L +   E P    W+++  +    + +FFE + T Y +   ++ D
Sbjct: 291 GNMRWRSLGFGNLLEDNIEEPENMRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
 gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
          Length = 348

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347


>gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
          Length = 388

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 32/334 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L +  +   + PLKY   WE Y  A  ++W   EV +  D+  WK+   L D+E+  
Sbjct: 74  EPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LNDNEQKF 130

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA S+ +V  NI       +   E R +   Q+  E VH  T+  +I     D
Sbjct: 131 IKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKD 190

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    F   + VP I  KANWAL++                      +    +   EG
Sbjct: 191 GAEKKQLFEAIQTVPCIERKANWALKWFD--------------KSRPFAERLFAFACVEG 236

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH  F +++   ++        K   
Sbjct: 237 IFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR-------NKPST 289

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +   +++ EA  +E  +  + +P   +G+N+    +Y++++++R   Q+G  P++  ++N
Sbjct: 290 ETIHSIVKEAVEIEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIWN-SKN 348

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 349 PFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 378


>gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 332

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/316 (32%), Positives = 168/316 (53%), Gaps = 8/316 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E Y  A  N W   EV    DLA  +    +T  ER +I R + FFA+ +
Sbjct: 11  LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLR--GRVTPAERHLIHRLVAFFATGD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150
           S+V NN+VL +Y+H++ PE R YL RQ +EEA+H   +  ++ +   D            
Sbjct: 69  SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  ++        T+   + FL +L  F    EG++F+  FA +  
Sbjct: 129 NIPSIKLKADFCFKWIDSIEGLDRLE-TRAHRRAFLLNLVCFAACIEGLFFFAAFAYVYF 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES H+ F   VI+ ++ E P L+  E + +   ML EA  
Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAVE 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E A+A + + +G  GL+      Y++++A+RR   +G+ P+F   +NPF +M  + D++
Sbjct: 248 CETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFMD-LQDVQ 305

Query: 331 KEKNFFETRVTEYQQG 346
           +  NFFE RV+ YQ G
Sbjct: 306 ELTNFFERRVSAYQLG 321


>gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain
           [Streptomyces microflavus]
          Length = 321

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ +
Sbjct: 18  LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150
           S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  E         
Sbjct: 75  SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA +  
Sbjct: 135 NIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A    ++ RDE++H+NF  +V++ ++ E P L+    Q++   ML EA  
Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQEQVTAMLKEAVE 253

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  ++
Sbjct: 254 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFAFM-ELQGVQ 311

Query: 331 KEKNFFETRV 340
           +  NFFE R 
Sbjct: 312 ELTNFFERRP 321


>gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
          Length = 347

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V  +R++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDVKD 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L   ER    + L F    +S+ + N+   +  +++  E    L  Q+F+E VH
Sbjct: 68  YRQ---LPAAERRAYDKILSFLVFLDSVQSANL-PNVSAYITANEVDLCLTIQSFQECVH 123

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +       R+      K +  L    T     +    ++  +E   
Sbjct: 124 SQSYSYMLDTIASPDE------RQEIIFQWKDDEHLLARNTFIGDLYNEFQQEQSRENFL 177

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   + EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL    +++  ++ 
Sbjct: 178 RVLIANYILEGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRDLRA 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T E ++  R M+ E    EIA+    +     GLN    E Y+ ++ N R   I
Sbjct: 238 EEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARAESI 297

Query: 308 GLEPLFKY-TENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           GL  L++   E P    W+S+  +    + +F E R T Y +   L  D
Sbjct: 298 GLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTALVDD 346


>gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 324

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 28/325 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S      P++Y   W+ Y  A    W   EVP+  D+  W+    L DDER  IK  LGF
Sbjct: 13  SRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDDERHFIKHILGF 70

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GEL 145
           FA S+ +V  N+       ++ PE RQ+   Q F E++HS  +  +I +L  DE    EL
Sbjct: 71  FAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNEL 130

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           F+    +P++  KA WA ++ +                +   +  V +V  EG+ F   F
Sbjct: 131 FDAIENIPAVHNKAKWAQKWLE--------------PGKSFAERLVAWVCVEGILFSGSF 176

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
             I  L     M G+    ++I RDE LH  FG  + ++++ + P        +  + ++
Sbjct: 177 CAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLP-------FETVKQII 229

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA   E  +  + +P   +G+N+    QY++F+A+R    +G E ++  ++NPF +M E
Sbjct: 230 TEAVENEKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-SKNPFAFM-E 287

Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
           +I L+ + NFFE RV++YQ+   +K
Sbjct: 288 LISLQGKTNFFEKRVSDYQRPGVMK 312


>gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 348

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  KRM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLKRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347


>gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
 gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
          Length = 339

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 180/337 (53%), Gaps = 10/337 (2%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            K+ML        L P++Y   ++ Y +A  N W   E+  Q D+    S   ++  ER 
Sbjct: 5   PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   
Sbjct: 63  LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F+    + SI  KA++  ++  ++ S +    T++  ++FL +   F    E
Sbjct: 123 DPEERAKAFSAVENIDSIKKKADFCFKWIDSIQSLTRIE-TREQRRQFLLNQICFAACIE 181

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F+  FA +        + G+A    ++ RDES H+ F  + +  ++ E P L+ +E 
Sbjct: 182 GLFFFAAFAYVYYFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEM 241

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +Q+   ML EA   E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    
Sbjct: 242 KQQVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNVR- 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           NP P+M E+ D+++  NFFE RV+ YQ G   E+ +D
Sbjct: 301 NPLPFM-ELQDVQELTNFFERRVSAYQVGVQGEVAFD 336


>gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
 gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
          Length = 355

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 17  LFNPDGDTDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDIKDY 76

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L  +ER    + L F    +S+   N+   I  +++  E    L  Q F+EAVHS
Sbjct: 77  ---PRLPAEERRAYDKILSFLIFLDSIQTANL-PHIGEYITANEINLCLSIQTFQEAVHS 132

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       RE      K +  L          +    +      L  
Sbjct: 133 QSYSYMLDTICEPQK------REEILYQWKEDEHLLLRNEFIGSLYNEFQETKSARSLVR 186

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ ++K E
Sbjct: 187 TLIANYILEGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKE 246

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E  +  R M+ E    EI + H  +     GL       Y++++ N RC  +G
Sbjct: 247 EPQLFAAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLG 306

Query: 309 LEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            E +++          W+ +  +    + +FFE + T Y + + L  D
Sbjct: 307 FERIYEGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSALVDD 354


>gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
 gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
          Length = 389

 Score =  283 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  + + +L +  +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 69  VEEEYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 125

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I 
Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 185

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E    F   + VP I  KA WA+++              D       +    +
Sbjct: 186 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 232

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 233 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 285

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +        ++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+  ++
Sbjct: 286 NRPGVDTIHAIVREAVDIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 345

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 346 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 379


>gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 2]
          Length = 324

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/328 (27%), Positives = 154/328 (46%), Gaps = 28/328 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           + + +L    +   + P+     W+ Y    +  W P E+    D+  W   N L  DE+
Sbjct: 5   NTEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDEQ 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFASS+ +V  N+ L     +   E R +   Q   E +HS T+  +I S  
Sbjct: 62  YFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYI 121

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+     P I  K +WA+++ Q               +       V +   
Sbjct: 122 KDSDEKHKLFHSLEHFPCIKKKGDWAMKWIQD-------------KKSSFATRLVAFACV 168

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE+LH  F + + N+++        K 
Sbjct: 169 EGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLEK-------KL 221

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++K R ++ EA  +E  +  + +P   +G+N+    QY++F+A+R   Q+G + ++  T
Sbjct: 222 NKKKVREIIEEAVTIEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIY-AT 280

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
            NPF +M E+I L+++ NFFE+RV+EY 
Sbjct: 281 NNPFDFM-ELISLEQKTNFFESRVSEYS 307


>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 336

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/324 (31%), Positives = 178/324 (54%), Gaps = 10/324 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY   +E Y +   N W   EV    DL    S   +T+ E+ +I+R + FFA+ +
Sbjct: 15  LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHS--KMTESEKHLIRRLVAFFATGD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
           S+V NN+VL +Y+H+++PE R YL RQ +EEA+H   +  ++ +   +  E    F    
Sbjct: 73  SIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +PSI  KA++  ++  +++  +    T +  + FL +L  F    EG++FY  FA +  
Sbjct: 133 NIPSIKKKADFCYKWIDSINELT-ELNTIEDRRRFLMNLICFATCVEGLFFYAAFAYVYF 191

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L     + G+A    ++ RDES+H+ F I+V+   + E P L+ ++ +     ML +A  
Sbjct: 192 LRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDMVVQMLEDAIE 251

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            E+ +AH+ +  G  GL+A    QY+++ A++R   + + P +   +NPF +M E+ D++
Sbjct: 252 CEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPFIFM-ELQDMQ 309

Query: 331 KEKNFFETRVTEYQQG--AELKWD 352
           +  NFFE RV+ YQ G    + +D
Sbjct: 310 ELANFFERRVSAYQTGVSGAVAFD 333


>gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 332

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 117/328 (35%), Positives = 183/328 (55%), Gaps = 5/328 (1%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D R+    S +  +L PL + WA+       +N W P EVP+ +D+  W     LT++ER
Sbjct: 4   DHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHE--KLTEEER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
                 LGFF   ESLV  N+VLAI+ ++  PE R YL RQ +EEA H+  F+Y++ +L 
Sbjct: 62  HAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLP 121

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQ-TLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           +D  ++F  +REVP++ AK  +    TQ  L        T+   +  L++L  ++VV EG
Sbjct: 122 VDREKVFAAHREVPAVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEG 181

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY GF   LS  R N + G+     + ++DESLHL+FG+ +I     E   + T    
Sbjct: 182 IFFYAGFLLALSWRRRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLA 241

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ EA  LE AY    +P+  +GL+A +   Y++++A+RR  ++GLE  F  T N
Sbjct: 242 REVRGLILEAVQLERAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPN 300

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P  WM+  +D+ +  NFFE   T Y+ G
Sbjct: 301 PAKWMATEVDVPEIVNFFEAVNTSYEVG 328


>gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 330

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 31/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +PSI  KA WA ++               A         V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + N
Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L+ + NFFE R   YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325


>gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 365

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 21/352 (5%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           ++T ++   A   +  ++   +L A        P +Y WA++ +L+    HW+P EVP+ 
Sbjct: 28  DSTAMTDTAAPVAQPPMEQS-LLTANP---VYKPFRYPWAYDAWLTQQRVHWLPEEVPLA 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           DD+  W     LT+ ER ++ +   FF  S+  V N  +    +     E    L   + 
Sbjct: 84  DDVKDWH--RTLTESERHLVTQIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSN 141

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            E +H   + +++ ++G+ E E ++ + +   +  K ++  Q             +   +
Sbjct: 142 IETIHIAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQQ------------FSVSDN 188

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            +  + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDESLH +    + 
Sbjct: 189 YQIARTLAAFGAFTEGLQLFASFAILLNFPRHNKLKGMGQIVSWSVRDESLHCDSMARLF 248

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIAN 301
                ENP +WT   +   R +  +    E A+   +   G V  L+A   ++Y++F+AN
Sbjct: 249 RVFVQENPEIWTDTLRDDIRQICRDIVEHEDAFIDLSFEMGAVEGLDAGQVKRYIRFVAN 308

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
           RR  Q+GL+ ++    NP PW+ E+++  +  NFFE R TEY + +    WD
Sbjct: 309 RRLGQLGLDGIYDIATNPLPWVDEMVNAVEHANFFENRATEYSRASTTGTWD 360


>gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella
           denticola F0289]
 gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola F0289]
          Length = 348

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347


>gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus
           salmonis]
          Length = 335

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 29/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L   +    + P+ Y   W  Y  A    W   EV +  DL  W     L  D
Sbjct: 12  QEKNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWA---KLNKD 68

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N++      +   E R +   Q   E +HS  +  +I +
Sbjct: 69  EKHFISNVLAFFAASDGIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDT 128

Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D+ E    FN    +  +  KA WAL++                  +      V + 
Sbjct: 129 YIEDDKEKDKLFNSILTIECVKKKAEWALRWI--------------TGDKPFATRLVAFA 174

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA +  L +   M G+    + I RDE  H +F   + +       HL  
Sbjct: 175 AVEGIFFSGSFASLFWLKKRGLMPGLTFSNELISRDEGSHTDFACLLYS-------HLEN 227

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   +    ++ E   +E  +  +++P G +G+NA   + Y++F+A+     + +E  + 
Sbjct: 228 KLDPKYVLQIIKEGVEIEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY- 286

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +T+NPF +M   I +  + NFF+ RV+EYQ+
Sbjct: 287 HTKNPFNFMDN-ISMTGKTNFFDKRVSEYQR 316


>gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
 gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
          Length = 342

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 168/347 (48%), Gaps = 14/347 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           ++     I   + +  V D+++     + +  L  +KY WA + + +   N W P EV M
Sbjct: 2   DHLSRKKIYNPQSQEQVSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSM 61

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L+  E++   R L      +SL  NN++  I   +++PE    L+RQA
Sbjct: 62  HGDKNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQA 118

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           +EEA+HSH++  ++ S+  +   ++ M+R   ++  K +   Q    LS+        + 
Sbjct: 119 YEEALHSHSYAVMVESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN--------NP 170

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
            +  L        + EG++FY+GF+   +L R+ +M+G A+  ++I RDE  HL+   ++
Sbjct: 171 TEYNLLKALFANQILEGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNM 230

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           IN ++ E   L++ E   +   M  +A  LE A+         + L+      Y +++A+
Sbjct: 231 INTLRKERSDLFSPELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLAD 290

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
            R   +GL  L+  ++NP  W+ +  +      NFFE +V+ Y +G+
Sbjct: 291 TRLAVVGLPKLYN-SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336


>gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
          Length = 349

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + +   E    +  ++M+   + ++N    + Y W  + Y  A NN W+P E+ +  D  
Sbjct: 9   NALFNPEGDTELRLRKMIGGNTTNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDTK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E V
Sbjct: 69  DY---PHLDKAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L    T     +    +  D   L
Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDSFTL 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    M+ E    EI +    +     GLN    E Y+ ++ N R   
Sbjct: 239 KEEPELFTSDRVKVYEAMMREGVKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTS 298

Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 299 LGFTPLYEDNLKEPESMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 339

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 10/337 (2%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            K+ML        L P++Y   ++ Y +A  N W   E+  Q D+    S   ++  ER 
Sbjct: 5   PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   
Sbjct: 63  LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     + SI  KA++  ++  ++        T+   ++FL +   F    E
Sbjct: 123 DPEERVKAFAAVENIDSIKKKADFCFKWIDSIQDLKRIE-TRAERRQFLLNQICFAACIE 181

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F+  FA +        + G+A    ++ RDES H+ F  + +  ++ E P L+  E 
Sbjct: 182 GLFFFAAFAYVYYFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEM 241

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +Q+   ML EA   E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    
Sbjct: 242 KQQVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNVR- 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           NP P+M E+ D+++  NFFE RV+ YQ G   E+ +D
Sbjct: 301 NPLPFM-ELQDVQELTNFFERRVSAYQVGVQGEVAFD 336


>gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 31/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +PSI  KA WA ++               A         V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + N
Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L+ + NFFE R   YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325


>gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit
           [Cryptosporidium muris RN66]
 gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Cryptosporidium muris RN66]
          Length = 346

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/332 (24%), Positives = 152/332 (45%), Gaps = 29/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L++ + ++Q++  +    W  Y     + W   E+ +  D+  W+S   L + E+ 
Sbjct: 27  EEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEKH 83

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139
            IK  L FFA+S+ +V  N+ +   + +   E R Y   Q   E +HS T+  +I     
Sbjct: 84  FIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYIS 143

Query: 140 --LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
              D   LF     +P++  KA WA ++                +     +  + +   E
Sbjct: 144 DVKDRQMLFEAISHLPAVKTKAKWATKWMN--------------NNRSFAERIIGFCAVE 189

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I  L +   M G+    + I RDE +H +FG  +   +    P+      
Sbjct: 190 GILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYG----- 244

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             + + ++ EA  +E A+  +++P   +G+N+    QY++F+A+R    + +  ++  T 
Sbjct: 245 --RVQEIIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT- 301

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM  +I L+ + NFFE RV EYQ    +
Sbjct: 302 NPFDWMD-LISLQGKTNFFEKRVAEYQMAGVM 332


>gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 347

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V ++RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   +  +++  E    L  QAF+EA+
Sbjct: 67  DYR---RLSQAEKNAYDKTLSFLIFLDSIQTANL-PNVGDYITANEVNLCLTIQAFQEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   +       R       K +  L          +       D   L
Sbjct: 123 HSQSYSYMLDSICSSQE------RNDILYQWKNDARLLERNKFIGDLYNDFITHHDGIHL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 177 MKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T    ++ + ML      EI +    +     GL      +Y+ ++ N R   
Sbjct: 237 KEEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRSTS 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y + P    W+S   +    + +FFE R + Y + + L  D
Sbjct: 297 LGFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 348

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 28/319 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P+KY   +  Y  A +  W   EVP+  D+A W+    L DDER  IK  LGFFA S+ 
Sbjct: 43  FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRD--KLNDDERHFIKTILGFFAGSDG 100

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151
           +V  NI       +++P  R +   Q F E++HS  +  ++ +L  D+ E    F+    
Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++               +  +   +  V +V  EG+ F   F  I  L
Sbjct: 161 IPAVGKKAAWAQKF--------------LSQDKSFAERLVAWVCVEGLLFSGSFCAIFWL 206

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++       L  K    + + ++ EA   
Sbjct: 207 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLAQVKAIVEEAVAN 259

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N+    QY++F+A+R    +G    +  T NPF +M E+I L+ 
Sbjct: 260 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 317

Query: 332 EKNFFETRVTEYQQGAELK 350
           + NFFE RV+EYQ+   + 
Sbjct: 318 KSNFFERRVSEYQRPGVMN 336


>gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
 gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
          Length = 322

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 31/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  +   +L +  +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 2   VEEEYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I 
Sbjct: 59  NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 118

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E    F   + VP I  KA WA+++              D       +    +
Sbjct: 119 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 165

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 166 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 218

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +        ++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+  ++
Sbjct: 219 NRPGVDTIHAIVREAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 278

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 279 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 312


>gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 325

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 149/321 (46%), Gaps = 28/321 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   ++ Y  A    W   EV +  D+  W+    L DDER  IK  LGFFA S+ 
Sbjct: 20  FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWRE--KLNDDERHFIKHILGFFAGSDG 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151
           +V  N+       +++P  R +   Q + E+VHS  +  ++ +L  DE E    F     
Sbjct: 78  MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA +Y               +      +  V +V  EG+ F   F  I  L
Sbjct: 138 IPAVGKKAAWASKYF--------------SRDRSFAERLVAWVCVEGLLFSGSFCAIFWL 183

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++       L  K      ++++ EA   
Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLDVVKSIVEEAVAN 236

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+N+    QY++F+A+R    +G    F   ENPF +M E+I L+ 
Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294

Query: 332 EKNFFETRVTEYQQGAELKWD 352
           + NFFE RV+EYQ+   +  D
Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315


>gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 326

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 151/328 (46%), Gaps = 29/328 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+ + +   L P+++   W  Y  A ++ W   EV +  D+  WK    L   E+  
Sbjct: 8   EPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWK---KLNPKEKHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +   D
Sbjct: 65  ISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD 124

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             +    FN  + +PS+  KA+WA+++ +  +S                   V +   EG
Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIEDKNSD-------------FATRLVAFACVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH  F   +  +          K+  
Sbjct: 172 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRRYL--------KQKC 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ + ++ +A  +E  +  E++P   +G+N     +Y++F+A+     +  E ++ +T N
Sbjct: 224 KRVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPN 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 283 PFDFM-ENISLVGKTNFFDKRESQYQKA 309


>gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
 gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
          Length = 339

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 168/343 (48%), Gaps = 15/343 (4%)

Query: 12  AGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             + + +++D+R+    SD +     +KY WA   + +   N W P EV M  D   +K 
Sbjct: 8   NPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK- 66

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EEA HS +
Sbjct: 67  --FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKS 124

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +  ++ S+  +   +++M++    +  K  +  +  + LS         D D   +    
Sbjct: 125 YAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLAL 176

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
               + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN ++ E P
Sbjct: 177 FANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERP 236

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+T+E ++  R M  +A  LE ++         +G       QY++++A+RR   +G +
Sbjct: 237 DLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYK 296

Query: 311 PLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +   ++P PW+        +  NFFE  V  Y +G+ + +D
Sbjct: 297 AEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS-IDFD 337


>gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna
           ATCC 29328]
 gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 29328]
          Length = 354

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 16  LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 76  RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 131

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305

Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
 gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
          Length = 338

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 17/341 (4%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
              + V+     +  ++     P +Y WA+E +L+    HW+P EVP+ DD+  W     
Sbjct: 9   AAPIPVETPAHFDLLTENPVYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RN 66

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT  ER ++ +   FF  ++  V N  +    +     E    L   +  E +H   + +
Sbjct: 67  LTPGERNLLTQIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSH 126

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++ ++G+ E E ++ + +   +  K ++                + D+  E  + L  F 
Sbjct: 127 LLDTIGMPEVE-YSAFLKYKEMKDKYDYM------------QEFSVDSKHEIAKTLAAFG 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG+  +  FA +L+  R NKM G+ +   + +RDESLH N  I +      ENP +W
Sbjct: 174 AFTEGLQLFASFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIW 233

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPL 312
           T+E +++           E A+       G V  L A   ++Y+++IA+RR  Q+GL PL
Sbjct: 234 TEELRREIYLCCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPL 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           F   +NP PW+ E+++  +  NFFE R TEY + +    WD
Sbjct: 294 FHVDKNPLPWLDEMLNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
 gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
          Length = 354

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 16  LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 76  RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 131

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    ++  +     
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEEKSERNFMK 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ + +  EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305

Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium
           cryptum JF-5]
 gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5]
          Length = 338

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 17/341 (4%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
              + V+     +  ++     P +Y WA+E +L+    HW+P EVP+ DD+  W     
Sbjct: 9   AAPIPVETPAHFDLLTENPVYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RN 66

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT  ER ++ +   FF  ++  V N  +    +     E    L   +  E +H   + +
Sbjct: 67  LTPGERNLLTQIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSH 126

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++ ++G+ E E ++ + +   +  K ++                + D+  E  + L  F 
Sbjct: 127 LLDTIGMPEVE-YSAFLKYKEMKDKYDYM------------QEFSVDSKHEIAKTLAAFG 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG+  +  FA +L+  R NKM G+ +   + +RDESLH N  I +      ENP +W
Sbjct: 174 AFTEGLQLFASFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIW 233

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPL 312
           T+E +++           E A+       G V  L A   ++Y+++IA+RR  Q+GL PL
Sbjct: 234 TEELRREIYLCCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPL 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           F   +NP PW+ E+++  +  NFFE R TEY + +    WD
Sbjct: 294 FHVDKNPLPWLDEMLNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 353

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 160/354 (45%), Gaps = 20/354 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N TG +P  A +         +L +        P +Y WA++ +L+    HW+P EVP
Sbjct: 4   ITNATGTAPESAPQPTGVEARLDLLTSNP---IYKPFRYPWAYDAWLTQQRVHWLPEEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + DD+  W     LT+ E+ ++ +   FF  S+  V N  +    R     E    L   
Sbjct: 61  LADDVKDWH--RTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +  E +H   + +++ ++G+ E E ++ + +   +  K ++                + D
Sbjct: 119 SNIETIHIAAYSHLLDTIGMPEME-YSAFLKYKEMKDKYDYM------------QGFSVD 165

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +  E  + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH      
Sbjct: 166 SKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSMAR 225

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFI 299
           +      ENP +WT   +     +  +    E A+       G V  L+    + Y++FI
Sbjct: 226 LFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTYIRFI 285

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
           A+RR + +GL+ ++    NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 286 ADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRASTTGSWE 339


>gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
           sapiens]
 gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 3 [Pan troglodytes]
 gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form
           [Homo sapiens]
 gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo
           sapiens]
          Length = 299

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 15  DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +    FN    +P +  KA+WAL++        
Sbjct: 72  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 126

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 127 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +          L  K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 179 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285


>gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 347

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  +R++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNEHGDIELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 69  RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298

Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 347

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      + ++ ++M+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KQLFNENGDIELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+ +E+    + L F    +S+   N+   I  +++  E    L  QA++EA+
Sbjct: 67  DYR---KLSKEEKNAYDKILSFLVFLDSIQTANL-PNIGEYITANEVNLCLTIQAYQEAI 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ YI+ ++   E       R       K +  L          +     D     L
Sbjct: 123 HSQSYGYILDTICSPEE------RTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFNL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    SLGR  KM G  ++ +YI RDE+ HL     ++ ++K
Sbjct: 177 VKTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E  H++T+E     R M+ +    EI +A   +     GL+    E Y++++ N RC  
Sbjct: 237 KEEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCKG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + +++ Y + P    W+SE  D    + +FFE +V+ Y +   ++ D
Sbjct: 297 LGFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346


>gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
           butzleri RM4018]
 gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter
           butzleri RM4018]
          Length = 339

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 167/343 (48%), Gaps = 15/343 (4%)

Query: 12  AGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             + + +++D+R+    SD +     +KY WA   + +   N W P EV M  D   +K 
Sbjct: 8   NPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK- 66

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EEA HS +
Sbjct: 67  --FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKS 124

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +  ++ S+  +   +++M++    +  K  +  +  + LS         D D   +    
Sbjct: 125 YAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLAL 176

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
               + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN ++ E P
Sbjct: 177 FANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERP 236

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+T E ++  R M  +A  LE ++         +G       QY++++A+RR   +G +
Sbjct: 237 DLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYK 296

Query: 311 PLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +   ++P PW+        +  NFFE  V  Y +G+ + +D
Sbjct: 297 AEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS-IDFD 337


>gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens]
          Length = 285

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 1   EEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 57

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +    FN    +P +  KA+WAL++        
Sbjct: 58  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 112

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 113 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 164

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +          L  K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 165 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 217

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 218 QYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 271


>gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella
           virus MT325]
          Length = 326

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 28/319 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P+KY   +  Y  A +  W   EVP+  D+A W+    L DDER  IK  LGFFA S+ 
Sbjct: 21  FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRD--KLNDDERHFIKTILGFFAGSDG 78

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151
           +V  NI       +++P  R +   Q F E++HS  +  ++ +L  D+ E    F+    
Sbjct: 79  MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA ++               +  +   +  V +V  EG+ F   F  I  L
Sbjct: 139 IPAVGKKAAWAQKF--------------LSQDKSFAERLVAWVCVEGLLFSGSFCAIFWL 184

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++       L  K    + + ++ EA   
Sbjct: 185 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLAQVKAIVEEAVAN 237

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  E +P   +G+N+    QY++F+A+R    +G    +  T NPF +M E+I L+ 
Sbjct: 238 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 295

Query: 332 EKNFFETRVTEYQQGAELK 350
           + NFFE RV+EYQ+   + 
Sbjct: 296 KSNFFERRVSEYQRPGVMN 314


>gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
 gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
          Length = 374

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 142/354 (40%), Positives = 219/354 (61%), Gaps = 8/354 (2%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           ++ L  I  G KR +  D +++  R  DV Q +P+KY    E++L+A  N W+P E+PM 
Sbjct: 24  SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           +D   W +   LT+ E  + K N+ +  +S++LV +N+  AI +H++  E RQY   Q  
Sbjct: 84  EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142

Query: 123 EEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           EE+ H  ++ +I+ S GLDE   G++FN+Y+EVP++T K NW L +T  + +     GT 
Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +A++  L+DL  +Y +FE ++F  GF+QI +L R  K+   A+QY YI RDE+LH + G+
Sbjct: 203 EANRALLEDLISYY-IFEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298
            +I QI  EN  LW    Q++SR ++ EA  LE  YAH +MP+ G VGL   +  ++  F
Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+  C  +G++PLF+  E+P PW+SE  +L  E NFFE RV EYQ G++L WD
Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374


>gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
 gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
          Length = 347

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 69  RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298

Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SouthAfrica7]
          Length = 341

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  ++ +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEKNI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus]
          Length = 374

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 23/334 (6%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    +   + PLKY   W  Y  A  + W   EV +  D+A W+    +TD+ER
Sbjct: 48  EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWE---KMTDNER 104

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I +  
Sbjct: 105 FFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYI 164

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE E    FN   EVP I  KA WA++      +  F             +  + +   
Sbjct: 165 RDEKERNILFNAIFEVPCIAKKAEWAVKMGLQTITAPF------------AERVIAFAAV 212

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            G  F  G   I   G   K  G    + + +    +  + G+  I+ +     H+  K 
Sbjct: 213 GGNIFSLGPVAIPFSGLKKK--GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKL 269

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  E++P   +G+N     QY++++A+    ++G E + K +
Sbjct: 270 SQERIYYIIRDAVAIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-S 328

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +NPF +M E I +  + NFFE +V+EYQ+   L 
Sbjct: 329 KNPFDFM-ENISIDGKTNFFEKKVSEYQRPGVLS 361


>gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
 gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
 gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
          Length = 352

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 30/351 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            +   +  +    K   V++  +  +R + N+L  L     W  Y  A  + W+  E+ +
Sbjct: 15  KDEENIEKLVNEVKINQVNEPMLKYSRENRNELKELI-KDIWSMYKKAEASFWVTEEIDL 73

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   W+S   L D ER  IK  L FFA+S+ +V  N+ +   R +  PE R Y   Q 
Sbjct: 74  SQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQM 130

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I     +  E    F     + ++  KA WA ++  +          
Sbjct: 131 SIEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNS---------- 180

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +    +  + +   EG+ F   F  I  L +   M G+    + I RDE LH +F 
Sbjct: 181 ----ERSFAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFA 236

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +   +K + P         + + ++ EA  +E  +  +++P   +G+N+    QY++F
Sbjct: 237 CLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIEF 289

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    + +  ++  + NPF WM  +I L+ + NFFE RV EYQ    +
Sbjct: 290 VADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVGEYQMAGVM 338


>gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 407

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/299 (27%), Positives = 129/299 (43%), Gaps = 43/299 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  +V +  DL  W+S   L DDER  I   L FFA+S+ +V  N+V    + +   E 
Sbjct: 135 WL--QVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEA 189

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLS 170
           R +   Q   E +HS  +  +I +   +  E    FN    +P +  KA+WAL +     
Sbjct: 190 RCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNWIGNQ- 248

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                       +    +  V +   EG++F   FA I  L +   M G+    + I RD
Sbjct: 249 ------------KASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 296

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH +F   +         HL  K   Q    ++  A  +E  +  E +P   +G+N  
Sbjct: 297 EGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNCQ 349

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ++Y++FI                 ENPF +M E I L+ + NFFE RV EYQ+   +
Sbjct: 350 LMKRYIEFIY--------------RAENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 393


>gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 324

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 155/325 (47%), Gaps = 28/325 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S      P++Y   W  Y  A    W   EVP+  D+A W+    L +DER  IK  LGF
Sbjct: 13  SRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWRE--KLNNDERHFIKHILGF 70

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--- 145
           FA S+ +V  N+       +  PE RQ+   Q F E+VHS  +  +I +L  DE E    
Sbjct: 71  FAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALISDEQERLDL 130

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           F+    +P++  KA WA ++                 +    +  V ++  EG+ F   F
Sbjct: 131 FDAIETIPAVHNKAKWAQKW--------------LKPERSFAERLVAWICVEGILFSGSF 176

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
             +  L     M G+    ++I RDE LH  FG  + ++++        K   +  + ++
Sbjct: 177 CALFWLRNKGVMPGLCLSNEFISRDEGLHQQFGELMYSKLQ-------NKLSFETIKQII 229

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA   E  +  + +P   +G+NA    QY++F+A+R    +G E ++  ++NPF +M E
Sbjct: 230 MEAVTNEKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-SKNPFAFM-E 287

Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
           +I L+ + NFFE RV++YQ+   + 
Sbjct: 288 LISLEGKTNFFEKRVSDYQRPGVMN 312


>gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 2 [Callithrix jacchus]
          Length = 299

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 15  DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +    FN    +P +  KA+WAL++        
Sbjct: 72  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 126

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 127 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +          L  K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 179 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G    F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285


>gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
 gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
          Length = 341

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 175/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E+++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEVSWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
 gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
          Length = 390

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 3/342 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   + R  +  KR++N  RS    +LPLKY  A+  Y     NHW P  + M  D   W
Sbjct: 43  LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            +   L+  ER +I+  +G+F+++E +V ++++  I  +L+  E +   LR   EE++H 
Sbjct: 103 NT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            +  +II SL +D  E+   + ++PS+  K  +  ++   L      T T +  Q+F + 
Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTAN-KQKFAKA 220

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           +F    V EG  FY  FA ILSL R NKM GI + +QY +RDES H+  G  ++ Q+  E
Sbjct: 221 IFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIAE 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT EF+ +    + E   LE  +  + +P+  VG+       Y+++ A+RR   + 
Sbjct: 281 NPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGLD 340

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           L  L     NPF W+ EVI L+KEKNFFETRVTEYQ    LK
Sbjct: 341 LPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382


>gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           acinonychis str. Sheeba]
 gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 341

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLIDEVIEMFKKAVKIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain [Theileria annulata]
 gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain, putative [Theileria annulata]
          Length = 322

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 14/303 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+ Y   WE Y  A  + W   E+    D   W     L  DER  I 
Sbjct: 19  ILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHWH---KLNKDERHFIT 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   DE 
Sbjct: 76  NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 135

Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     + ++  KANWA ++    +S +    +   ++       V Y   EG+ 
Sbjct: 136 EKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVEGIL 195

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P        + 
Sbjct: 196 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLPE-------EA 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ EA ++E +Y  +++P   +G+N+    QY++F+A+R    +G+ P++  T NPF
Sbjct: 249 VQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT-NPF 307

Query: 321 PWM 323
            WM
Sbjct: 308 DWM 310


>gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Lithuania75]
          Length = 341

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
 gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream
           iridovirus]
          Length = 312

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +   F
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+              +A  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++  + NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMDN- 276

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
           I ++ + NFFE RV+EYQ+     
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300


>gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           pylori B8]
 gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           pylori B8]
          Length = 341

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 346

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      V +  ++M+N  + ++N    +KY W  + Y +  NN W+P E+ M  D+ 
Sbjct: 6   KALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDIK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++ +     E+    + L F    +S+   N+   I  + +  E    L  QA++EA+
Sbjct: 66  DYRNLDF---HEKKAYDKILSFLIFLDSIQTANL-PNISDYTTANEVNLILTIQAYQEAI 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ YI+ ++   E       R       + +  L          +    ++  +E  
Sbjct: 122 HSQSYSYILDTIASPEE------RTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKETY 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I ++K
Sbjct: 176 MKTVMGNYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQELK 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T+E   + + ML E    EI +    +     G+ A   + Y++++ N R   
Sbjct: 236 KEEVELFTEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRSRS 295

Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IG   LF       N   W+SE  +  + + +FFE +V+ Y + +  + D
Sbjct: 296 IGFGNLFDRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345


>gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Gambia94/24]
          Length = 341

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPAG1]
 gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori HPAG1]
          Length = 341

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
 gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
          Length = 341

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori B38]
 gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Helicobacter pylori B38]
          Length = 341

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +   +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori J99]
 gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
           pylori J99]
 gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
           pylori 908]
 gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
           pylori 2018]
 gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
           pylori 2017]
          Length = 341

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Sat464]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEESI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 35A]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori P12]
 gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori P12]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
 gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 341

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 26695]
 gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB)
           [Helicobacter pylori 26695]
          Length = 341

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis]
          Length = 289

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 29/297 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W     LT +E+  I   L FFA+S+ +V  N+     + +  PE R +
Sbjct: 2   EEVDLSQDLYQW---VNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAF 58

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS  +  ++ +   D  E    FN    +P +  KA WA+++ Q+  S  
Sbjct: 59  YGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGS-- 116

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                         +  V +   EG++F   F  I  L +   M G+    + I RDE L
Sbjct: 117 ------------FAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 164

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + + +K +          ++ + ++ +A  +E  +  E +    VG+NA    
Sbjct: 165 HCDFACLLYSLLKSKLSE-------ERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMS 217

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           QY++FIA+R    +G   ++ + ENPF WM  +I L+ + NFFE RV +YQ+ + + 
Sbjct: 218 QYIKFIADRLLVALGHGKMY-HVENPFDWMD-LISLQGKTNFFERRVGDYQKASIMS 272


>gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F16]
          Length = 341

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 172/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIESLWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 347

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 161/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      +++  + ++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNENGDIDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K    L + E+    + L F    +S+    +   +  +++  E    L  Q+F+E++HS
Sbjct: 69  K---ILDEAEKRAFDKILSFLIYLDSIQTAQL-PNLQAYITANEINLCLSIQSFQESIHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R         +  L       +  +     D  +  L  
Sbjct: 125 QSYSYILDTICSPEE------RTEILYQYINDKTLLERNKYITDQYAGFLNDKTKGNLMH 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E  ++ R +L      EIA+    +     GL +   E Y++++ N R   +G
Sbjct: 239 QPELFTEEKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATNLG 298

Query: 309 LEPLFKY---TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            EPL++          W+++  D+   + +FFE +VT Y + A ++ D
Sbjct: 299 FEPLYEGYDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346


>gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori 51]
          Length = 341

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 52]
          Length = 341

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori v225d]
 gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Cuz20]
 gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F32]
 gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 83]
          Length = 341

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 387

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 29/326 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            ML        + P+K+   W  Y  A  ++W   E+    D+  W   NGL+D+E+  I
Sbjct: 74  PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
           K  L FFA S+ +V  NI       +   E R +   QA  E VH  T+  +I       
Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSS 190

Query: 141 -DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            ++ +LF   + +P I  KA WA+++                 +    +  + +   EG+
Sbjct: 191 TEKNQLFEAIQTIPCIERKAKWAMKWFD--------------KKRPFAERLLAFACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   + G+    + I RDE +H  F +++ N +K        K   +
Sbjct: 237 FFSGSFCAIYWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSGE 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               ++ +A  +E  +  + +P   +G+N+    +Y++++A+R   Q+G + ++  T+NP
Sbjct: 290 IIEEIIRDAVTIEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345
           F +M E I L  + NFFE RV +Y +
Sbjct: 349 FDFM-ENISLDGKTNFFEKRVGDYGK 373


>gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper
           iridovirus]
          Length = 312

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 148/324 (45%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +   F
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+              +A  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNV-GNPFDFMDN- 276

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
           I ++ + NFFE RV+EYQ+     
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300


>gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 342

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA   Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDIKQF---PYLTDSERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIISFLNFLDSVQSENL-PNISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D ++       V   + EG++
Sbjct: 134 TRDKIYDEWRTDSTLLERNRFIADAYQRFSD--------DPNEGNFLHTIVANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    +++ +++ E P L+TKE    
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAH 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EI +         +GLN    E+Y++++AN R   IGL PL+   ++NP
Sbjct: 246 IADMIRQGAENEIKWGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNGTKTDFFEAKVTNYTKAAAFDFD 339


>gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F30]
          Length = 341

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori India7]
          Length = 341

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 172/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F57]
          Length = 341

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 171/347 (49%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +V+++++     + +  L  +KY WA   + +   N W   EV M DD  
Sbjct: 6   KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA+
Sbjct: 66  DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HSH +  ++ S+  +  E+++M+R    +  K ++  Q    L+        K+  +E +
Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKNKNDYIAQVYMELA--------KNPTEENI 174

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R  +
Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus]
          Length = 312

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146
           A ++ +V +N+V    + L   PE R +   Q   + +H+  +  +I +L   E +   F
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+              +A  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNV-GNPFDFMDN- 276

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
           I ++ + NFFE RV+EYQ+     
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300


>gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
 gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
          Length = 339

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   +G++        +L A        P +Y WA++ +L+    HW+P EVP+ DD+ 
Sbjct: 1   MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W     L + E+ ++ +   FF  S+  V N  +    R     E    L   +  E +
Sbjct: 58  DWHRV--LNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + Y++ +LG+ E E ++ + +   +  K ++              T T D+  E  
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYM------------QTFTVDSKHEIA 162

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH    I +     
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305
            ENP LWT++ + +   +       E A+       G V  LNA   + Y+ FIA+RR  
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           Q+GLEP++  T NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRSTEYSRASTAGTWE 330


>gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           centenum SW]
 gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum
           centenum SW]
          Length = 322

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 156/322 (48%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +L+    HW+P EVP+ DD+  W+    LT+ ER ++ +   FF  +
Sbjct: 11  VYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQ--KLTEAERNLLTQIFRFFTQA 68

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ +   
Sbjct: 69  DVEVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIE-YSAFLRY 127

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                  D+ ++  + L VF    EG+  +  FA +++  
Sbjct: 128 KEMKDKYDYM------------QGFNVDSLEDIAKTLAVFGAFTEGLQLFASFAILMNFP 175

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    I +      ENP +WT+ FQ++           E
Sbjct: 176 RFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELTVCCETIVHHE 235

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  + A   ++Y+++IA+RR  Q+GLEP+++  +NP PWM  +++  +
Sbjct: 236 DAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLPWMDAILNGIE 295

Query: 332 EKNFFETRVTEYQQGAE-LKWD 352
             NFFE R TEY + A    WD
Sbjct: 296 HTNFFENRATEYSKAATRGTWD 317


>gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
 gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 339

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/337 (29%), Positives = 177/337 (52%), Gaps = 10/337 (2%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            K+ML        L P++Y   ++ Y +A  N W   E+  Q D++   S   ++  ER 
Sbjct: 5   PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHS--KMSPGERH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   
Sbjct: 63  LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F     + SI  KA++  ++  ++ +      T++  ++FL +   F    E
Sbjct: 123 DPDERVKAFAAVENIDSIKKKADFCFKWIDSIQNLKRIE-TREERRQFLLNQICFAACIE 181

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F+  FA +        + G+A    ++ RDES H++F  + ++ I+ E P L+  + 
Sbjct: 182 GLFFFAAFAYVYYFRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKM 241

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +Q    ML EA   E+ +A + +  G  G++     QY+Q  A+   H++G+E  +    
Sbjct: 242 KQDVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYNVR- 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
           NP  +M E+ D+++  NFFE R + YQ G   E+ +D
Sbjct: 301 NPLSFM-ELQDVQELTNFFERRASAYQVGVQGEVAFD 336


>gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3]
 gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3]
 gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3]
          Length = 335

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 27/326 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   +    L  +++   W  Y  A  ++W   E+ +  D A W+S   L+++E+  
Sbjct: 14  EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFF 70

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+     + +   E R +   Q   E VHS  +  ++ +  LD
Sbjct: 71  LKNILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILD 130

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    F     +P I  KA+WAL + ++             D  F + L  F  V EG
Sbjct: 131 PVERNGLFKAMETMPCIKKKADWALNWIES------------PDATFGERLVAFTAV-EG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   + +       HL  K  +
Sbjct: 178 IFFSGAFASIFWLKQKVSMPGLTFSNELISRDEGLHRDFACLLFS------SHLRHKPSK 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ EA  +E  +  +++P   VG+N     +Y+Q++A+    Q+GL  L+  T  
Sbjct: 232 ERVRAIITEAVEIEKEFLTQSLPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPC 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQ 344
           PF +M E I L+ + NFFE RV +YQ
Sbjct: 291 PFDFM-ENISLEGKTNFFEKRVADYQ 315


>gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502]
 gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis]
          Length = 296

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 29/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W+  E+ +  D   W+S   L D ER  IK  L FFA+S+ +V  N+ +  
Sbjct: 1   MYKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            R +  PE R Y   Q   E +HS T+  +I     D  E    F     + ++  KA W
Sbjct: 58  LREIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A ++  +              +    +  + +   EG+ F   F  I  L +   M G+ 
Sbjct: 118 ATKWMNS--------------ERSFAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLT 163

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +K + P         + + ++ EA  +E  +  +++P
Sbjct: 164 FSNELISRDEGLHADFACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLP 216

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+    QY++F+A+R    + +  ++  + NPF WM  +I L+ + NFFE RV 
Sbjct: 217 VDLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVG 274

Query: 342 EYQQGAEL 349
           EYQ    +
Sbjct: 275 EYQMAGVM 282


>gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body
           iridovirus]
          Length = 312

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146
           A ++ +V +N+V    + L   PE R +   +   E +H+  +  +I +L   E +   F
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+              +A  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q+ +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPSQEDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMDN- 276

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
           I ++ + NFFE RV+EYQ+     
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300


>gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
 gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
          Length = 304

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 26/304 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              +  N + + +L        + P+++   W  Y  A  + W   EV +  DL  W+  
Sbjct: 22  NDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWE-- 79

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +
Sbjct: 80  -RLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHSEMY 138

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  E    FN    +P +  KA+WAL++                      +
Sbjct: 139 SLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI-------------SHKTATFAE 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +   
Sbjct: 186 RVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYV--- 242

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 K  + +   ++ +A  +E  +  E +P   +G+N    ++Y++F+A+R   ++G
Sbjct: 243 ----VQKPTEDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLVELG 298

Query: 309 LEPL 312
            + +
Sbjct: 299 CKKV 302


>gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 334

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S
Sbjct: 24  VYKPFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVTQIFRFFTQS 81

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +    +     E    L   +  E +H   + +++ ++G+ E E ++ + + 
Sbjct: 82  DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESE-YSAFLKY 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                +     E  + L  F    EG+  +  FA +L+  
Sbjct: 141 KEMKDKYDYM------------QEFSVSNKYEIARTLAAFGAFTEGLQLFASFAILLNFP 188

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NK+ G+ +   + +RDE+LH      +      ENP +WT++ Q   R +  +    E
Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQICRDIVEHE 248

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+   +   G V  L+A   ++Y++F+ANRR  Q+GL+ L+    NP PW+ E+++  +
Sbjct: 249 DAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPWVDEMVNAVE 308

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + A
Sbjct: 309 HANFFENRSTEYSRAA 324


>gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen
           and kidney necrosis virus]
 gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen
           and kidney necrosis virus]
          Length = 312

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W     LT+ ER  +   L FF
Sbjct: 2   DKYVLRP-SDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TEKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +   F
Sbjct: 59  AMADGIVGDNLVCNFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+              +A  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKSIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFQEALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMDN- 276

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
           I ++ + NFFE RV+EYQ+     
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300


>gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 339

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   +G++        +L A        P +Y WA++ +L+    HW+P EVP+ DD+ 
Sbjct: 1   MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W     L + E+ ++ +   FF  S+  V N  +    R     E    L   +  E +
Sbjct: 58  DWHRV--LNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + Y++ +LG+ E E ++ + +   +  K ++              T T D+  E  
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYM------------QTFTVDSKHEIA 162

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH    I +     
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305
            ENP LWT++ + +   +       E A+       G V  LNA   + Y+ FIA+RR  
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Q+GLEP++  T NP PW+ ++++  +  NFFE R TEY + +
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRATEYSRAS 324


>gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
 gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
          Length = 342

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    ENP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
 gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
          Length = 349

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      + +  ++M+N  + ++N    +KY W  E Y +A NN W+P E+ +  DL 
Sbjct: 6   KALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L + E+    + L F    +S+   N+   I  +++  E    L  QA++EA+
Sbjct: 66  DYK---ILDEYEKTAFDKVLSFLIFLDSIQTANLPY-IGEYITANEINLCLTIQAYQEAI 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       + +  L          +     + D   L
Sbjct: 122 HSQSYGYMLDSICSPEE------RTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ +++
Sbjct: 176 VKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T+E     + M+      EIA+    + +   GL     E Y++++ N R   
Sbjct: 236 NEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTA 295

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +    L+  Y E P    W+SE  D    + +FFE + + Y + + +  D
Sbjct: 296 LNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345


>gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 342

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 166/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  Q F+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++ A+  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLARNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E ++K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEEK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ + T  EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 328

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 182/314 (57%), Gaps = 4/314 (1%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +L PL + WA+     A +N W P EVP+ DD+  W  +  L+D+ER  ++  LGFF   
Sbjct: 15  ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERRAVEMFLGFFNPM 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           ESLV  N++L++YR ++ PE R YL RQA+EEA H   F+Y+I +L LD   +F ++ E 
Sbjct: 73  ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P++ AK     +        +    + +  Q  +++L  ++V+ EG++FY+GFA  L+  
Sbjct: 133 PAVAAK-ELFQRQLAEQWLVTPDVESVEGLQRLVRNLVGYFVILEGIFFYSGFALALAFR 191

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           + N + G+     ++++DESLHL+FGI +I  I  E+P + +  F ++ R ++  A  LE
Sbjct: 192 QRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQLRELILRAVELE 251

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            AY    +P+  +GL+A    +Y+++IA+RR  ++GL   F    NP  WM   +D+ + 
Sbjct: 252 EAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGLPIAFGE-PNPLRWMVAQVDMPEI 310

Query: 333 KNFFETRVTEYQQG 346
            NFFE R   Y+ G
Sbjct: 311 VNFFEARNIHYEVG 324


>gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
 gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
          Length = 342

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 342

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
 gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
          Length = 342

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ + T  EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
 gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
          Length = 332

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y ++S  EC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 71  LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + L+Y + ++  +    T +  Q+F+++L  + VV EG+WFY+GF   LS  +
Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP + T+EF  + R M+ +A  +E 
Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY H+ +P G +GLNA    QY++++A+RR  ++G EP +K T NP  WM+   D  +  
Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEY 343
           NFFE+  T Y
Sbjct: 310 NFFESTNTSY 319


>gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
 gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
          Length = 342

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas
           neptunium ATCC 15444]
 gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 345

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 17/317 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N   P +Y WA+E +      HWMP EVP+ +D   W     L+D ER ++ +   FF  
Sbjct: 16  NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWA--VKLSDAERNLLTQIFRFFTQ 73

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+  V  N +          E    L   +  E +H   +  ++ ++G+ + E F+ + E
Sbjct: 74  SDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFME 132

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
              + AK ++  Q               + +++    + VF    EG+  +  FA +++ 
Sbjct: 133 YKEMAAKHDYLGQ------------FGTETNEDIAVSMAVFGAFTEGLQLFASFAMLMNF 180

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NKM G+ +   + +RDESLH    I + +    E   + T E +++ R        L
Sbjct: 181 PRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAETG-VMTDELRERIRDCCRTVVAL 239

Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E  +       G V  + A   + Y+++IA+ R +Q+ LEP++  T++P PW++E+++  
Sbjct: 240 EDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYGVTKHPIPWLTEILNGV 299

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE R TEY +GA
Sbjct: 300 EHANFFEQRSTEYSKGA 316


>gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus]
 gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
 gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2)
           [shrimp white spot syndrome virus]
 gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus]
 gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus]
          Length = 413

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 52  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +    FN  +  P+I  K  WA+ + Q+ +               L +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 214

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 329 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 362


>gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 357

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/317 (33%), Positives = 179/317 (56%), Gaps = 4/317 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA E Y  A  N W P E+ + +DLA ++    ++D+ER  +   + +F  +E
Sbjct: 45  LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFE---RMSDEERHALTFLMSYFNPNE 101

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H  +F+Y++ +  +D    +  +  VP
Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ AK  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP + T EF  + + M+ +A  +E 
Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY  + +P G +GLNA    QY++++A+RR  ++G  P +  T NP  WM+   D  +  
Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340

Query: 334 NFFETRVTEYQQGAELK 350
           NFFE   T Y+  A+L 
Sbjct: 341 NFFEATNTSYEVNAKLT 357


>gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 346

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 157/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +  +    +R++N  + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 8   LFNEKGDIETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDY 67

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    + L F    +SL    I   +  +++  E    L  Q ++E++HS
Sbjct: 68  R---ELDKAEKTAYDKILSFLIYLDSLQTAQI-PKLQSYVTANEINLCLSIQGYQESIHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       RE      K +  L          +    ++ + +    
Sbjct: 124 QSYSYILDTICSPEE------REEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDNFMK 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF+   +LGR  KM G   + +YI RDE+ HL     +I ++K E
Sbjct: 178 ALIANYILEGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKE 237

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P ++T E  +K + ML +    EIA+    +     GLN    E Y+ ++ N R   +G
Sbjct: 238 EPEIFTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLG 297

Query: 309 LEPLFKYT---ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              LF           W+SE  D  + + +FFE R + Y + + ++ D
Sbjct: 298 FGNLFDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345


>gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
 gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
          Length = 340

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 160/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +
Sbjct: 6   IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  AY--NLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +    +  K ++     + L+         +   E L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E + K   M   A  LEI +         +G      EQY++++ ++R   IG
Sbjct: 236 RPDLFTPETEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIG 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+  +    +P  W+ +      +K NFFE +VT Y +G+ + +D
Sbjct: 296 LKRRYNV-PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338


>gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
 gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
          Length = 340

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       N+ D+R+ N     +      KY WA + +     N W P EV    D+  +
Sbjct: 6   IYNPGSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  AY--SLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +    +  K ++     + L+         +   E L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E + K   M   A  LEI +         +G      EQY++++ ++R   IG
Sbjct: 236 RPDLFTSEMEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIG 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+  +    +P  W+ +      +K NFFE +VT Y +G+ + +D
Sbjct: 296 LKRRYDAR-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338


>gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
 gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
          Length = 351

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 14/346 (4%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           N      I       +V+++R+     + + +L  +KY WA+    +   N W P EV M
Sbjct: 10  NRVSRKKIYNPHSTESVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNM 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     LT  E+    R L      +SL  NN+   I  +++ PE    L+RQA
Sbjct: 70  NQDKRDY---MELTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQA 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEE++H+ ++  ++ S+  +  E++ M+R+   + +K ++       L+        K+ 
Sbjct: 127 FEESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIADVYTDLA--------KNP 178

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
            +  L        + EG++FY+GFA   +L R+ KM   AE  ++I RDE  HL     +
Sbjct: 179 TETNLIKAMFANQILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQM 238

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           I   + E P L+T+  Q +   M  +A  LE ++         +GL A    QY++++A+
Sbjct: 239 IISTRKERPDLFTQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLAD 298

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQG 346
           +R   +    L+  T+NP  W+ E ++   +  NFFE +V  Y +G
Sbjct: 299 KRLKAVDYPILYN-TQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG 343


>gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus]
          Length = 274

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 27/293 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  
Sbjct: 2   EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFASS+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +  +  KA+WA ++               +  +   +  V +   EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  + +   M G+    + I RDE LH +F   +         HL     +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSK 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +   +++ +A  +E  +    +P   +G+N     QY++F+A+R   ++G E 
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEK 270


>gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
          Length = 413

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 52  VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +    FN  +  P+I  K  WA+ + Q+ +               L +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 214

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 329 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 362


>gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 340

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I        ++D+++       +      KY WA + +     N W P EV   DD+ 
Sbjct: 4   KKIYNPSSNETLNDRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTDDVR 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA 
Sbjct: 64  DYAC--NLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEAN 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +   ++ M +    +  K ++     + L+         +   E L
Sbjct: 122 HSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAG--------EVTDEKL 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 174 LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E + K   M  +A  LEI +         +G      E+Y+ ++ + R   
Sbjct: 234 KERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEEYIHYLVDDRLTS 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           IGL+ L+   ++P  W+ +      +K NFFE++VT Y +G+ L +D
Sbjct: 294 IGLKKLYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LTFD 338


>gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1]
 gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1]
          Length = 328

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 26/334 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+  ++ +   P++    W  Y +A   +W   EV +  D+  W+ +  L  DER  
Sbjct: 7   EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+++ LV  N+     + +   E   +   Q   E VH+  +  +I +L  D
Sbjct: 65  ISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKD 124

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P I  KA WA ++T                     +  V +   EG
Sbjct: 125 VKEQDRLFNAVERMPCIAKKAEWAKRWTHD-------------TNASFGERLVAFAAVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L     M G+    ++I RDE LH +F   +         H+  K   
Sbjct: 172 IFFSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFK------DHILGKPGY 225

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ EA  +E  +  E +P   +G+N      Y++F+A+R    +G    + + +N
Sbjct: 226 ERVSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGFPKRY-HVKN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M E I ++ + NFFE  V++Y++      D
Sbjct: 285 PFGFM-ESISMEGKTNFFEKNVSQYKKFTFSDKD 317


>gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 337

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y W ++ +L+    HW+P EVP+ DD+  W+    LT  E+ ++ +   FF  +
Sbjct: 27  VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 84

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    +   A  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 85  DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 143

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++   +  +            + ++    + VF    EG+  +  FA +L+  
Sbjct: 144 KEMKDKYDYMQNFDMS------------SKKDIALTVAVFSAFTEGLQLFASFAILLNFP 191

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT E + +           E
Sbjct: 192 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 251

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G +  L A   + Y++FIANRR  Q+GLEP++   +NP  W+  +++  +
Sbjct: 252 DAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVE 311

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + A
Sbjct: 312 HMNFFEGRSTEYSKAA 327


>gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 342

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y W ++ +L+    HW+P EVP+ DD+  W+    LT  E+ ++ +   FF  +
Sbjct: 32  VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 89

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    +   A  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 90  DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 148

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++   +  +            + ++    + VF    EG+  +  FA +L+  
Sbjct: 149 KEMKDKYDYMQNFDMS------------SKKDIALTVAVFSAFTEGLQLFASFAILLNFP 196

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT E + +           E
Sbjct: 197 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 256

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G +  L A   + Y++FIANRR  Q+GLEP++   +NP  W+  +++  +
Sbjct: 257 DAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVE 316

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + A
Sbjct: 317 HMNFFEGRSTEYSKAA 332


>gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 369

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 13/346 (3%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   +   +R++   + ++ +L  +KY WA++ Y +  NN W+P E+P+ DD   +
Sbjct: 32  LFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQY 91

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
              + L+DDER    + L F    +SL+ +N+   I  +++ PE    L   AF+EAVHS
Sbjct: 92  ---DLLSDDERRSYNKVLSFLIFMDSLLTHNL-PNINEYITAPEVNLCLTVHAFQEAVHS 147

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+           R+      + +  L       +  F    ++     L  
Sbjct: 148 QSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNLMK 201

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY GF     LGR  KM+G   + ++I RDE  HL    ++ ++I  E
Sbjct: 202 TIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRE 261

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP + T + +++   M+  A   EIA+         VGL     + Y++++AN R   + 
Sbjct: 262 NPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLN 321

Query: 309 LEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           L  L+    E+P PWM     +     +FFE RVT Y +   L WD
Sbjct: 322 LPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 367


>gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
           oxydans 621H]
 gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter
           oxydans 621H]
          Length = 339

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 153/316 (48%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S
Sbjct: 24  VYKPFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQS 81

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +  +    +     E    L   +  E +H   + +++ ++G+ E E ++ + + 
Sbjct: 82  DVEVNSAYMKYYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKY 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++              +   D  +E  + +  F    EG+  +  FA +L+  
Sbjct: 141 KEMKDKYDFM------------QSFNIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFP 188

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NK+ G+ +   + +RDE+LH    I +      EN  +WT EF+++   +       E
Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEHE 248

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  +++   ++Y++FIA+RR  Q+GL+P++    NP PW+ ++++  +
Sbjct: 249 DAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAVE 308

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + +
Sbjct: 309 HANFFENRSTEYSRAS 324


>gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           curvus 525.92]
 gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           curvus 525.92]
          Length = 340

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +
Sbjct: 6   IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LTD E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  AY--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +    +  K ++     + L+         +   E L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRAE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+T E ++K   M  +A  LEI +         +G      E+Y+ ++ ++R   IG
Sbjct: 236 RSDLFTPEMEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRLVAIG 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+  +   ++P  W+ +      +K NFFE++VT Y +G+ L +D
Sbjct: 296 LKRKYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 349

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 37  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 93

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 94  DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 153

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +    FN  +  P+I  K  WA+ + Q+ +               L +L V +
Sbjct: 154 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 199

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 200 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 256

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 257 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 313

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 314 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 347


>gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
 gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
          Length = 354

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 165/336 (49%), Gaps = 17/336 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + +LN  + ++ +   +KY WA   Y +  NN W+P E+ + +D+  +   + LT  ER 
Sbjct: 28  EGILNGNTTNLREWNRIKYDWANVMYRTMLNNFWIPEEISLGEDIKQF---SYLTAGERK 84

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+   N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++  
Sbjct: 85  AFDKIISFLNFLDSIQCENL-PNLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTN 143

Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ++++ +RE P +  +  +     Q  +         D   E      +   + EG
Sbjct: 144 PVTRDKIYDEWREDPILLRRNKFIADMYQRFAD--------DPSTENFVRSVMANYILEG 195

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++  ENP ++T E +
Sbjct: 196 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIIRELMKENPEIFTDELK 255

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
            + R M+   TL EI +         +G+N    E+Y+++++N R   IGL   F   TE
Sbjct: 256 GELREMVKVGTLNEIEWGQYVTNNEILGINNELIERYIKYLSNLRLRAIGLPVWFPEITE 315

Query: 318 NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           NP  W+    +L   + +FFE +VT Y + A   +D
Sbjct: 316 NPMAWIESFSNLNATKTDFFEAKVTNYTKAAAFDFD 351


>gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           concisus 13826]
 gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           concisus 13826]
          Length = 340

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       N+ D+R+ N     +      KY WA + +     N W P EV   DD+  +
Sbjct: 6   IYNPSSNENLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT+ E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  AY--NLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +    +  K ++     + L+         +   E L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEELAG--------EVTDEKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E + K   M  +A  LEI +         +G      EQY+ ++ ++R   IG
Sbjct: 236 RPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRLVAIG 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+  +    +P  W+ +      +K NFFE +VT Y +G+ + +D
Sbjct: 296 LKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338


>gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
 gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
          Length = 343

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 152/322 (47%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA++ +++    HW+P EVPM DD+  W+    LT+ ER ++ +   FF  +
Sbjct: 18  VYKPFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESERNLLTQIFRFFTQA 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +    +     E    L   +  E +H   + +++ ++G+ E E +  + + 
Sbjct: 76  DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YQAFLKY 134

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++              + + +   E  + L  F    EG+  +  FA +++  
Sbjct: 135 KEMKDKYDYM------------QSFSVENKTEIAKTLAAFGAFTEGLQLFASFAILMNFP 182

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    I +      ENP +WT++ +     +       E
Sbjct: 183 RFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVEICTTIVEHE 242

Query: 273 IAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+        G  G+     +QY++FIA+RR  Q+GLEP +   +NP PW+ E+++  +
Sbjct: 243 DAFIDLAFELGGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPWLDEILNAVE 302

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE R TEY + +    W+
Sbjct: 303 HMNFFEGRATEYSKASTAGTWE 324


>gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 339

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +L     HW+P EVP+ DD+  W     L + E+ ++ +   FF  S
Sbjct: 29  VYKPFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDWH--RNLNEVEQHLVTQIFRFFTQS 86

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +    R     E    L   +  E +H   + +++ ++G+ E E ++ + + 
Sbjct: 87  DVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKY 145

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                + D+ +E  + L  F    EG+  +  FA +L+  
Sbjct: 146 KEMKDKYDYMHS------------FSVDSKREIAKTLAAFGAFTEGLQLFASFAILLNFP 193

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  K+ G+ +   + +RDE+LH    I + +    EN  +WT++ +Q+ R +       E
Sbjct: 194 RFGKLKGMGQIVSWSVRDETLHCLSIIKLFHVFIDENREIWTEDLRQEIRQICATIVEHE 253

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  L+A   + Y+++IA+RR  Q+GLEPLF    NP PW+ ++++  +
Sbjct: 254 DAFIDLAFELGSVEGLDAAQVKSYIRYIADRRLIQLGLEPLFHVERNPLPWIDDMLNAVE 313

Query: 332 EKNFFETRVTEYQQGAEL-KWD 352
             NFFE R TEY + + +  W+
Sbjct: 314 HANFFENRATEYSRASTVGTWE 335


>gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
           strain Muguga]
 gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative
           [Theileria parva]
          Length = 308

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 138/313 (44%), Gaps = 38/313 (12%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LN   +   L P+ Y   WE Y  A  + W   E+    D   W     L  DER  I 
Sbjct: 10  LLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWH---RLNKDERHFIT 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   DE 
Sbjct: 67  NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 126

Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     + ++  KANWA ++                D+    +  V Y   EG+ 
Sbjct: 127 EKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVEGIL 172

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P        + 
Sbjct: 173 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLPE-------EA 225

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNA----------PSCEQYMQFIANRRCHQIGLE 310
            + ++ EA ++E +Y  +++P   +G+N+              QY++F+A+R    +G+ 
Sbjct: 226 VQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQALGVR 285

Query: 311 PLFKYTENPFPWM 323
           P++  T NPF WM
Sbjct: 286 PVYNVT-NPFDWM 297


>gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 345

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 13/346 (3%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   +   +R++   + ++ +L  +KY WA++ Y +  NN W+P E+P+ DD   +
Sbjct: 8   LFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQY 67

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
              + L+DDER    + L F    +SL+ +N+   I  +++ PE    L   AF+EAVHS
Sbjct: 68  ---DLLSDDERRSYNKVLSFLIFMDSLLTHNL-PNINEYITAPEVNLCLTVHAFQEAVHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+           R+      + +  L       +  F    ++     L  
Sbjct: 124 QSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNLMK 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY GF     LGR  KM+G   + ++I RDE  HL    ++ ++I  E
Sbjct: 178 TIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIVRE 237

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP + T + +++   M+  A   EIA+         VGL     + Y++++AN R   + 
Sbjct: 238 NPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLN 297

Query: 309 LEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           L  L+    E+P PWM     +     +FFE RVT Y +   L WD
Sbjct: 298 LPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343


>gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
 gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
          Length = 346

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 11/325 (3%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                +  L  L Y WA+  +     N W P EV + +D   ++    L   E+ M  + 
Sbjct: 24  GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           L      +S+  NN    +   ++ PE    L+RQAFEEA+HS ++  ++ S+ L+  E+
Sbjct: 81  LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEI 140

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + M+R   ++  K  +     +     +      + D E    + V     EG++FY GF
Sbjct: 141 YEMWRADENLRKKNEFIGNVYEEWGIKAL-----NGDDEAKIYMIVANQALEGIYFYNGF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A    L RA KM+G A+  ++I RDE  H     ++  +IK E P L+T E  +  + ML
Sbjct: 196 AAFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIKDML 255

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWM 323
           + A  LE  +         +GL+    +++ +++AN+R H +GLE LF     +NP  W 
Sbjct: 256 YAAYELERDWGFYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPISWF 315

Query: 324 SEVIDLKK-EKNFFETRVTEYQQGA 347
                  + + NFFE  V  Y +G+
Sbjct: 316 DSFSSFNEQKTNFFEGNVVNYSKGS 340


>gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 340

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I       +++D+++       +      KY WA + +     N W P EV    D+ 
Sbjct: 4   KKIYNPNSDESLNDRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTTKDVI 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LTD E+ M         S +S   NN+   I  +++ PE    L RQA+EEA 
Sbjct: 64  DYNK--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQAYEEAN 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +   ++ M +    +  K ++     + L+         D  +E L
Sbjct: 122 HSKSYAVMVEAMCDNTDLIYEMEKHDEVLRRKNDYISSVYEELAG--------DVTEEKL 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + EG++FY+GF  I +L R  +M+G A+  ++I RDE  HL    ++IN  K
Sbjct: 174 VLAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQNMINTTK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T   + K   M  +A  LEI +         +G      E Y+ ++ + R   
Sbjct: 234 KERPDLFTDALKAKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLVDDRLTA 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +G + L+  + +P  W+ +      ++ NFFE  V+ Y +G+ L +D
Sbjct: 294 VGFDKLYNAS-HPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS-LSFD 338


>gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 387

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 147/330 (44%), Gaps = 29/330 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + + ML        + P+++   W  Y  A  ++W   E+    D+  W   N L+D+E
Sbjct: 70  EESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNE 126

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA S+ +V  NI       +   E R +   Q+  E VH  T+  +I   
Sbjct: 127 KHFIKYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKY 186

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E    F   + +P I  KA WA+++                 +    +  + +  
Sbjct: 187 IKNSSEKKQLFEAIQTIPCIERKAKWAMKWFD--------------KKRPFAERLLAFAC 232

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   + G+    + I RDE +H  F +++ N +K        K
Sbjct: 233 VEGIFFSGSFCAIFWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NK 285

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             Q     ++ +A  +E  +  + +P   +G+N+    +Y++++A+R   Q+G   ++  
Sbjct: 286 PSQNTIEEIIRDAVSIEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN- 344

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           T+NPF +M E I L  + NFFE RV +Y +
Sbjct: 345 TKNPFDFM-ENISLDGKTNFFEKRVGDYGK 373


>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera]
          Length = 312

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 29/289 (10%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L++ E+  I   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
              +  PE R +   Q   E +HS  +  ++ +   D  E    FN    +  +  KA W
Sbjct: 58  LHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL + Q+                   +  + +   EG++F   F  I  L +   M G+ 
Sbjct: 118 ALDWIQS--------------STLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 163

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + + ++ + P        QK   ++HEA  +E  +  E +P
Sbjct: 164 FSNELISRDEGLHCDFACLLYSLLQKQLPW-------QKVHHIVHEAVEIETQFVCEALP 216

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
              +G+NA    QY++F+A+R    +G E  +   ENPF WM E I L+
Sbjct: 217 CALIGMNATLMSQYIKFVADRLLVALGYERKYNV-ENPFDWM-EFISLQ 263


>gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia
           profundicola AmH]
 gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia
           profundicola AmH]
          Length = 346

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 152/325 (46%), Gaps = 11/325 (3%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                +  L  L Y WA+  +     N W P EV + +D   ++    L   E+ M  + 
Sbjct: 24  GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           L      +S+  NN    +   ++ PE    ++RQA+EEA+HS ++  ++ S+ L+  E+
Sbjct: 81  LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEI 140

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + M+R   ++  K  +     +   + +      + D E    + V     EG++FY GF
Sbjct: 141 YEMWRVDANLRKKNEFIGNVYEEWGTKAL-----NGDDEAKIYMIVANQCLEGIYFYNGF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A    L RA KM+G A+  ++I RDE  H     ++  +IK E P L+T E  +  + ML
Sbjct: 196 ASFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIKDML 255

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWM 323
           + A  LE  +         +G++    +++ Q++AN+R   +GL+ LF     +NP  W 
Sbjct: 256 YAAYELERDWGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPISWF 315

Query: 324 SEVIDLKK-EKNFFETRVTEYQQGA 347
                  + + NFFE  V  Y +G+
Sbjct: 316 DGFSSFNEQKTNFFEGNVVNYSKGS 340


>gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
 gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
          Length = 342

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 17/336 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++M+N  + ++ +   +KY WA   Y +  NN W+P E+ + +D+   K    LTD ER 
Sbjct: 16  QQMINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   + R+++ PE    L  QAF+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIIAFLNFLDSIQSENL-PHLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTN 131

Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ++++ +RE   +  +  +     +  +        ++ + +      +   + EG
Sbjct: 132 PVTRDKIYDQWREDEELLKRNRFIADIYERFN--------EEPNDKNFLRAIMANYILEG 183

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENP L+T+   
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVVFQNIIKELKKENPELFTESMI 243

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           ++ R M+      EIA+         +G+N    + Y+++++N+R   IGLE L+   T 
Sbjct: 244 EEFREMMRVGVEHEIAWGQYVTANEIMGINDQLIDAYIKYLSNQRLKAIGLEELYPEITT 303

Query: 318 NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +P  W+     L   + +FFE +VT Y + A   +D
Sbjct: 304 HPMAWIDSFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 329

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 152/314 (48%), Gaps = 13/314 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSNVEKNLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L+         F    K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLE---------FEESKKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L+A     Y+++IANRR  Q+GL+ ++   +NP PW+ E+++  +  
Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
 gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
          Length = 348

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 20/359 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++
Sbjct: 1   MKAAVDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K+   LTD E+      L F    +S+  NNI   +  +++ PE    L  
Sbjct: 61  DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   E       R       + +  L       +  +    +
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQRFLE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + + E    + V   + E ++FY GF     L   N+M+G ++  + I RDE  H+    
Sbjct: 171 NPNDENFSKVIVADYLLEAIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQ 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            ++ +I+ ENP  +  E   +   M  +A   EI + +  +    +G+   + EQY +++
Sbjct: 231 HLLKEIRNENPDFFNDE---EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWL 287

Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           AN R   IGL+P++    +NP+  +++  D +     + NFFE  VT Y   + +  WD
Sbjct: 288 ANERLRSIGLKPIYDGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346


>gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 342

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 167/334 (50%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENPH++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 342

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDGFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
 gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
          Length = 350

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q               D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLQQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    + + +    E   L T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  +     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGA 347
             NFFETR TEY + A
Sbjct: 293 HANFFETRSTEYSKAA 308


>gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Clostridium botulinum H04402 065]
          Length = 342

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
 gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
          Length = 342

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 167/333 (50%), Gaps = 16/333 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +    +++ +   +KY WA   Y +  NN W+P E+ +Q+D+  +     LTD ER    
Sbjct: 19  IKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDVKQF---PYLTDGERNAFD 75

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
           + + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++     
Sbjct: 76  KIIAFLNFLDSIQSENL-PNISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPVT 134

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              +++++RE   +  +  +     Q  S         +   E    +     + EG++F
Sbjct: 135 RDRIYDIWREDKYLLERNKFIANIYQRFSD--------EPSDENFVRVVFANYILEGIYF 186

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF+   +L R  KM   +  ++YI RDE  HL    +++ ++++E   ++TK  +++ 
Sbjct: 187 YSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEEL 246

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPF 320
           R M+      EIA+         +G+N    +QY+++++N+R   +GLE L+   T++P 
Sbjct: 247 REMMRTGVEHEIAWGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHPM 306

Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            W+    ++   + +FFE +VT Y + A   +D
Sbjct: 307 EWIESFSNINSTKTDFFEAKVTNYTKAAVFDFD 339


>gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei str. Twist]
 gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei TW08/27]
 gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma
           whipplei TW08/27]
 gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str.
           Twist]
          Length = 327

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 176/310 (56%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y WA + Y  A  N W P E+ + +D+A +K    +T +E+  +   + +F  +E
Sbjct: 14  LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFK---KMTHEEKHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D  E ++ + EVP
Sbjct: 71  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + ++Y + ++  +    T +  ++F+++L  + VV EG+WFY+GF   L   +
Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T +F  + R M+     +E 
Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y H+ +P G +GLN+    QY++++A+RR  ++G +P +  T NP  WM+   D  +  
Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 310 NFFEAINTSY 319


>gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           phagocytophilum HZ]
 gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma
           phagocytophilum HZ]
          Length = 323

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  +
Sbjct: 9   VYKPFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + + 
Sbjct: 67  DIEVNNCYMKHYSNIFRPTEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKF 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  +         F    +   +   + L VF    EG+  +  FA +L+  
Sbjct: 126 EVMKKKYDYMQR---------FEECRRGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +   +  RDESLH +  I + N    EN  +W  + +Q+         +LE
Sbjct: 177 RFGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLE 236

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G V  L+A   ++Y++FIANRR  Q+ LEP++   ENP PW+ E+++  +
Sbjct: 237 DEFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVE 296

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY + A E  W+
Sbjct: 297 HTNFFENRVTEYARAATEGTWE 318


>gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. St. Maries]
 gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Mississippi]
 gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Puerto Rico]
 gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Virginia]
 gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale
           str. St. Maries]
          Length = 324

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 7   RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 65  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  +         F    K   +   + L VF    EG+  +  FA +L+
Sbjct: 124 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          
Sbjct: 175 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 234

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  L+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 235 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 294

Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352
            +  NFFE RVTEY + A E  WD
Sbjct: 295 VEHTNFFENRVTEYSRAATEGTWD 318


>gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 1]
          Length = 324

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 28/327 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + P+     W+ Y    +  W   E+    DL  W   N L  +E+ 
Sbjct: 6   NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQY 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFASS+ +V  N+ L     +   E R +   Q   E +HS T+  +I S   
Sbjct: 63  YIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIK 122

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E    F+     P I  K  WA+++                 +       V +   E
Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWIND-------------KKSNFSTRLVAFACVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE+LH  F + + ++++ +      +E 
Sbjct: 170 GIFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEALHTEFAVHLFHKLEKKINKKKIREI 229

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +       EA ++E  +  E++P   +G+N+    QY++++A+R   Q+G E ++  T 
Sbjct: 230 IE-------EAVVIEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIY-RTN 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           NPF +M E+I L+++ NFFE+RV+EY 
Sbjct: 282 NPFDFM-ELISLEQKTNFFESRVSEYS 307


>gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
 gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
          Length = 343

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 26  RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 83

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 84  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  +         F    K   +   + L VF    EG+  +  FA +L+
Sbjct: 143 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          
Sbjct: 194 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 253

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  L+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 254 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 313

Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352
            +  NFFE RVTEY + A E  WD
Sbjct: 314 VEHTNFFENRVTEYSRAATEGTWD 337


>gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
 gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
          Length = 342

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
 gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
          Length = 332

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 15  RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 72

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 73  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  +         F    K   +   + L VF    EG+  +  FA +L+
Sbjct: 132 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W    + +          
Sbjct: 183 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANLRAELYGACRVIVS 242

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  L+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 243 LEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 302

Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352
            +  NFFE RVTEY + A E  WD
Sbjct: 303 VEHTNFFENRVTEYSRAATEGTWD 326


>gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
          Length = 353

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 164/352 (46%), Gaps = 20/352 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++ +  D  
Sbjct: 13  KKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKN 72

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K+   LTD E+      L F    +S+  NNI   +  +++ PE    L  Q F+EA+
Sbjct: 73  DYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSIQTFQEAI 128

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   E       R       + +  L       +  +    ++ + +  
Sbjct: 129 HSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQKFLEEPNDKNF 182

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   N+M+G ++  + I RDE  H+     ++ +I+
Sbjct: 183 SKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIR 242

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP  +  E   +  +M  +A   EI + +  +    +G+   + EQY +++AN R   
Sbjct: 243 NENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRS 299

Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           IGL+P+++   +NP+  +++  D +     + NFFE  VT Y   + +  WD
Sbjct: 300 IGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351


>gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           botulinum Ba4 str. 657]
 gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 342

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
 gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
          Length = 329

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L+         F    K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
          Length = 342

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  K+   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 329

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 13/314 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L+         F    K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L+A     Y+ ++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
 gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
          Length = 351

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q               D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLQQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    + + +    E   L T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  +     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGA 347
             NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAA 308


>gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
 gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q               D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLAQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    I + +    E   L T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIIRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  +     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGA 347
             NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAA 308


>gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
 gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
          Length = 311

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 28/313 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L
Sbjct: 23  QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KL 79

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D+E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 80  NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 139

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   DE E    F+    +P++  KA WA ++                D     +  V
Sbjct: 140 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIV 185

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 186 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 245

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 246 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK 298

Query: 312 LFKYTENPFPWMS 324
           +F + +NPF WM 
Sbjct: 299 IF-HAKNPFNWMD 310


>gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           ulcerans ATCC 49185]
          Length = 348

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/359 (23%), Positives = 165/359 (45%), Gaps = 20/359 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++
Sbjct: 1   MKAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K+   LTD E+      L F    +S+  NNI   +  +++ PE    L  
Sbjct: 61  DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   E       R       + +  L       +  +    +
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQKFLE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + + +    + +   + E ++FY GF     L   N+M+G ++  + I RDE  H+    
Sbjct: 171 EPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQ 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            ++ +I+ ENP  +  E   +  +M  +A   EI + +  +    +G+   + EQY +++
Sbjct: 231 HLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWL 287

Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           AN R   IGL+P+++   +NP+  +++  D +     + NFFE  VT Y   + +  WD
Sbjct: 288 ANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346


>gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
           bathyomarinum JL354]
          Length = 354

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HWMP EVP+ +D   W     L++ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQ--KLSEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K ++  Q               D D++  + L  F    EGM  +  FA +++
Sbjct: 124 EYEEMKDKHDYLQQ------------FGVDTDEDIARTLAAFGGFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + ++   E    +TK  ++    +  ++  
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRER-DCYTKAVKEDIIDICQKSVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  + A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY +GA
Sbjct: 291 VEHANFFEQRATEYSKGA 308


>gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D11]
          Length = 348

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 8   KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 68  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 123

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 124 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 177

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 178 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 237

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN R   
Sbjct: 238 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 294

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 295 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 329

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L+         F    K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris
           MCS10]
 gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10]
          Length = 345

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +D   W +   L D ER ++ +   FF  S+ 
Sbjct: 19  KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWAT--KLNDGERNLLTQIFRFFTQSDV 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F+ + E  +
Sbjct: 77  EVNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQA 135

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +               + + + L+ + +F    EG+  +  FA +++  R 
Sbjct: 136 MADKHDYMQR------------FGVEDEADILRTVAMFGAFTEGLQLFASFAMLMNFPRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    I + +    E   L T+E +            LE  
Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEETGAL-TQEVKDDITECCRTVVGLEDK 242

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     + Y+++IA+ R  Q+GL  ++   E+P PW+SE+++  +  
Sbjct: 243 FIDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEHA 302

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY +GA
Sbjct: 303 NFFEARATEYSKGA 316


>gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 335

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 149/316 (47%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y W ++ +L+    HW+P EVP+ DD+  W+    L+  E+ ++ +   FF  +
Sbjct: 25  VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQA 82

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    +   A  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 83  DVEVNNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESE-YSAFMKY 141

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                  ++ ++  + + VF    EG+  +  FA +L+  
Sbjct: 142 KEMKDKYDYM------------QDFNVNSKEDIAKTVAVFSAFTEGLQLFASFAILLNFP 189

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT + +++           E
Sbjct: 190 RHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYEACRTIIAHE 249

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   GL A   + Y++FI NRR  Q+GLEP++   +NP  W+  +++  +
Sbjct: 250 DAFIDLAFEMGPMEGLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGWLDTMLNAVE 309

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + +
Sbjct: 310 HMNFFEGRATEYSKAS 325


>gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
          Length = 352

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 18/315 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA+E +      HW+P EVP+ +D   W S   L+D ER ++ +   FF  S+ 
Sbjct: 22  KPFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWAS--KLSDSERNLLTQIFRFFTQSDI 79

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  +
Sbjct: 80  EVQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEA 138

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++              T   D + + L+ L +F    EG+  +  FA +++  R 
Sbjct: 139 MRDKHDFM------------GTFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPRF 186

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    I + +    E   L TK  Q            +E  
Sbjct: 187 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKAL-TKSVQDDIIDCCKTVVTMEDK 245

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKE 332
           +       G V  +     + Y+++IA+ R  Q+ L  ++    ENP PW+  ++   + 
Sbjct: 246 FIDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVEH 305

Query: 333 KNFFETRVTEYQQGA 347
            NFFE R TEY + A
Sbjct: 306 ANFFEARATEYSKAA 320


>gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 340

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ L+   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 313

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +     N
Sbjct: 63  AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  K +WAL++T+               +  L +  V + + EG++F   FA 
Sbjct: 123 AFDNIPCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +    M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPFP+M+  I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYNAR-NPFPFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 340

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S  +NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTAGEKRMYDLVWSQLISMDSFQSNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ L+   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
          Length = 340

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       ++ D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPNSNESLSDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--HLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVETICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+ ++   K  +M   A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ ++   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 344

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ +R++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 331

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 181/315 (57%), Gaps = 4/315 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA + Y  A  N W P E+ + +D+A +K    +TD+ER  I   + +F  +E
Sbjct: 15  LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAITFLMSYFNPNE 71

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 72  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  ++F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T+EF  + + M+ +A  +E 
Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310

Query: 334 NFFETRVTEYQQGAE 348
           NFFE+  T Y+  A 
Sbjct: 311 NFFESTNTSYESNAS 325


>gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 340

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ L+   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum
           lavamentivorans DS-1]
 gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans
           DS-1]
          Length = 319

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 154/319 (48%), Gaps = 16/319 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + +   P +Y WA+E +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF
Sbjct: 6   ERHVYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSK--KLTEGERNLLTQIFRFF 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
             ++  V N  +    R     E +  L   +  E VH   + +++ ++G+ E E +  +
Sbjct: 64  VQADVEVNNCYMKHYSRVFKPTEVQMMLAAFSNIETVHISAYSHLLDTIGMPEAE-YEAF 122

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +   +  K ++  ++              +   +  + L VF    EG+  +  FA ++
Sbjct: 123 LKYEQMKTKFDYMQEW------------GVETKADIAKTLAVFGGFTEGVQLFASFAILM 170

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R NKM G+ +   +  RDE+LH    + +      ENP +WT+E ++          
Sbjct: 171 NFPRFNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETII 230

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             E A+       G +  L+A   + Y+++IA+RR  Q+ L+P+++  +NP PWM E+++
Sbjct: 231 HHEDAFIDLAFEMGSIEGLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLN 290

Query: 329 LKKEKNFFETRVTEYQQGA 347
             +  NFFE R TEY + +
Sbjct: 291 GIEHTNFFENRATEYSKAS 309


>gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 348

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVPM +D+  W     L D ER ++ +   FF  ++ 
Sbjct: 23  KPFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQADI 80

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  +
Sbjct: 81  EVQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEA 139

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D+D +  + L +F    EG+  +  FA +++  R 
Sbjct: 140 MKDKHDYMGQ------------FGVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQ 187

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           +KM G+ +   + +RDESLH    I + +    E     TK               +E  
Sbjct: 188 SKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVIEMEDK 246

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     + Y++FIA+ R  Q+ L  ++  TENP PW+  ++   +  
Sbjct: 247 FIDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEHA 306

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 307 NFFEARATEYSKAA 320


>gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 329

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/317 (32%), Positives = 182/317 (57%), Gaps = 4/317 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  E   YL +Q +EEA H  +F+Y++ +  +D  + +N + +VP
Sbjct: 71  LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ +K  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP L T EF  + + M+ +A  +E 
Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEYQQGAELK 350
           NFFE+  T Y+  A+  
Sbjct: 310 NFFESTNTSYESNAKAS 326


>gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 340

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I        + D+++ +     +      KY WA + +     N W P EV    D  
Sbjct: 4   KKIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDAL 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA 
Sbjct: 64  DYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEAN 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L
Sbjct: 122 HSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKL 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN + 
Sbjct: 174 LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVH 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   
Sbjct: 234 KERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSA 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           I L+ L+   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 294 INLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
 gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
          Length = 327

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+  + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D  ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYIQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 348

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 19/356 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   +       R++     + +  L    +  +  +     
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+    
Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            ++ +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++
Sbjct: 231 SMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWL 287

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           AN R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 288 ANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
 gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
          Length = 344

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           massiliae MTU5]
 gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           massiliae MTU5]
          Length = 336

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 12  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 69

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 70  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               DA ++    L VF    EG+  +  FA +L+  R 
Sbjct: 129 MKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 176

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 177 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 236

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 237 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 296

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 297 NFFENRATEYSKAATTGSWE 316


>gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter
           litoralis HTCC2594]
 gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 356

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HWMP EVP+ +D   W     +T+ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KITEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K ++                  D D++  + L VF    EGM  +  FA +++
Sbjct: 124 EYEEMKDKHDYL------------QLFGVDTDEDIARTLAVFGGFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    + + ++   E    +TK  ++    +  ++  
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIVRLFHEFVRER-DCYTKAVKEDIIDICQKSVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  +     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY +GA
Sbjct: 291 VEHANFFEQRATEYSKGA 308


>gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 348

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 19/356 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   +       R++     + +  L    +  +  +     
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+    
Sbjct: 171 EQSDENFAKIIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            ++ +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++
Sbjct: 231 SMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWL 287

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           AN R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 288 ANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 348

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/356 (24%), Positives = 159/356 (44%), Gaps = 19/356 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAVVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   +       R++     + +  L    +  +  +     
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+    
Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            ++ +IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++
Sbjct: 231 SIVKEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWL 287

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           AN R   +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 288 ANERLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
          Length = 344

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISEHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 327

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D  ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +     IENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
 gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
          Length = 340

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+ +    K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFNENNINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLVAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ ++   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 331

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK    L + E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWK--IKLLNVEKNLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K  + L+         F    K   +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF++   +       LE  
Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L+A     Y+++IANRR  Q+GL+P++   +NP PW+ E+++  +  
Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA 347
           NFFE RVTEY + A
Sbjct: 299 NFFENRVTEYSRAA 312


>gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni RM1221]
 gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni RM1221]
 gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 340

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ L+   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
           wittichii RW1]
 gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1]
          Length = 350

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA+E +      HW+P EVP+ +D   W     LTD ER ++ +   FF  ++ 
Sbjct: 11  KPFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQADV 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++             +T   D D++  + L +F    EG+  +  FA +++  R 
Sbjct: 128 MKDKHDYL------------STFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH    + + +    E   L T   +     M  +   +E A
Sbjct: 176 NKMKGMGQIVTWSIRDETLHCEGIVRLFHAFVKERDCL-TASVKDDILDMCQKTVRIEDA 234

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++  +  
Sbjct: 235 FIDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVEHA 294

Query: 334 NFFETRVTEYQQGA 347
           NFFETR TEY + A
Sbjct: 295 NFFETRATEYSKAA 308


>gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
          Length = 346

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+ 
Sbjct: 20  KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDV 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  +
Sbjct: 78  EVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEA 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++              T   D++ +  + L +F    EG+  +  FA +++  R 
Sbjct: 137 MKDKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH +  I + +    E     TK               LE  
Sbjct: 185 NKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETG-AVTKAVADDIVDCCKHVVGLEDK 243

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  +     + Y++FIA+ R  Q+ L  ++   ENP PW+  ++   +  
Sbjct: 244 FIDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEHA 303

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 304 NFFEARATEYSKAA 317


>gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
 gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
          Length = 349

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +D+  W S   L D+ER ++ +   FF  ++ 
Sbjct: 23  KPFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAS--TLNDNERNLLTQIFRFFTQADI 80

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L      E +H   +  ++ ++G+ E E F  + E  +
Sbjct: 81  EVQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEA 139

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D+D +  + L +F    EG+  +  FA +++  R 
Sbjct: 140 MRDKHDYMGQ------------FGVDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPRQ 187

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    I + +    E     TK               +E  
Sbjct: 188 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVNMEDR 246

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   +  
Sbjct: 247 FIDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEHA 306

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 307 NFFEARATEYSKAA 320


>gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 344

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 20/350 (5%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++ ++R++    +++  L  +K+ WA + Y +   N W+P +V +  D   +
Sbjct: 6   LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   LT  ER      L F    +S+  NN V  I  +++ PE    L  Q F+EA+HS
Sbjct: 66  EN---LTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHS 121

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++QYII S+   E       R++     + +  L       +  +    ++A  +    
Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKILFERNRFIAQIYQDFIEEASDKNFAK 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I +IK E
Sbjct: 176 VLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP+ + +E   + R M   A   EI +    +    +G+   + E Y +++AN R   IG
Sbjct: 236 NPNFFQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIG 292

Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           L P++   T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 293 LAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
 gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
          Length = 352

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA+E +      HWMP EVP+ +D   W     LT+ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K N+  Q               D D++  + L +F    EGM  +  FA +++
Sbjct: 124 DYEEMADKHNYMQQ------------FGVDNDEDIARTLAMFGAFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + ++   E   L TK  ++    +  +   
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERDCL-TKAVKEDIIDICQKTVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G V  +     ++Y+++IA+ R  Q+ L+P++   ++P PW++ +I+ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLING 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY +GA
Sbjct: 291 VEHANFFEQRATEYSKGA 308


>gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 351

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P +Y WA+E +      HWMP EVP+ +D   W     +++ ER ++ +   FF 
Sbjct: 7   RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KISEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N       R     E +  L   +  E VH   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++              T   + D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYEELKAKHDYL------------QTFGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH      + +    E   L TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGITRLFHAFVKERGCL-TKAVKEDIIDCCQKTVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G V  ++A   ++Y+++IA+ R  Q+GL  ++   ++P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFETR TEY + A
Sbjct: 291 VEHANFFETRATEYSKAA 308


>gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
          Length = 344

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ +R++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 344

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
 gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
          Length = 310

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---F 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E    F
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++               +  + L    + + + EG++F   F 
Sbjct: 122 NAIENVPTVKRKAEWVMKWI--------------SSDKTLAMRLIAFGLVEGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    +   + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G  P+F   ENPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYMR-L 279

Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352
           +D++ + NFFE RVTEY++  +  L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
 gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
          Length = 344

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
 gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
          Length = 340

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +    ++D+++ N     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPKSNETLNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         + D   L  
Sbjct: 124 KSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEELAG--------EVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+      K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RADLFNDTNVSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ ++   ++P  W+ +      +K NFFE++VT Y +G+ L +D
Sbjct: 296 LDKIYNV-KHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 313

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +     N
Sbjct: 63  AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +  +  K +WAL++T+               +  L +  V + + EG++F   FA 
Sbjct: 123 AFDNISCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +    M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPFP+M+  I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYNAR-NPFPFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           3_1_5R]
 gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
 gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
          Length = 344

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 20/350 (5%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++ ++R++    +++  L  +K+ WA + Y +   N W+P +V +  D   +
Sbjct: 6   LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   LT  ER      L F    +S+  NN V  I  +++ PE    L  Q F+EA+HS
Sbjct: 66  EN---LTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHS 121

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++QYII S+   E       R++     + +  L       +  +    ++        
Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKILFERNRFIAQIYQDFIEETSDRNFAK 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I +IK E
Sbjct: 176 VLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP+ + +E   + R M   A   EI +    +    +G+   + E Y +++AN R   IG
Sbjct: 236 NPNFFQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIG 292

Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           L P++   T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 293 LAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 313

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I  L  D   +  + N
Sbjct: 63  AADSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  VP +  K +WAL++              + D+    +  V + + EG++F   FA 
Sbjct: 123 AFDNVPCVRKKDDWALKWI-------------ENDKATFAERLVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +K   M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVKE------KLSYEKILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPF +M+  I
Sbjct: 224 AVDIEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLGQPKYYNAR-NPFSFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
 gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
          Length = 310

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DL        LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPD---LVKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---F 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E    F
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++               +  + L    + + + EG++F   F 
Sbjct: 122 NAIENVPTVQRKAQWVMKWI--------------SSDKPLAMRLIAFGLVEGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    +   + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G  P F  +ENPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYMR-L 279

Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352
           +D++ + NFFE RVTEY++  +  L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
 gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
          Length = 350

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HW+P EVP+ +D+  W S   L D+ER ++ +   FF  S+ 
Sbjct: 22  KPFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWAS--KLNDNERNLLTQIFRFFTQSDI 79

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   A  E VH   +  ++ ++G+ E E F  + E  +
Sbjct: 80  EVQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEA 138

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K N+  +               D D +  + L +F    EG+  +  FA +++  R 
Sbjct: 139 MRDKHNFMQK------------FGVDTDADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 186

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    I + +    E     TK               LE  
Sbjct: 187 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVSLEDK 245

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +   +   G V  +     +QY+++IA+ R  Q+ L  +F   ENP PW+  ++   +  
Sbjct: 246 FIDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEHA 305

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 306 NFFEARATEYSKAA 319


>gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 348

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +D   W     L D ER ++ +   FF  S+ 
Sbjct: 22  KPFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSDI 79

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  +
Sbjct: 80  EVADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEA 138

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++              T   D + +  + L +F    EG+  +  FA +++  R 
Sbjct: 139 MRDKHDFM------------QTFGVDTEADIARTLAMFGGFTEGLQLFASFAMLMNFPRQ 186

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH +  I + +    E   + TK               LE  
Sbjct: 187 NKMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKETG-VVTKAVADDIVQCCETVVGLEDK 245

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  +     +QY++FIA+ R  Q+ L  L+   ENP PW+  ++   +  
Sbjct: 246 FIDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEHA 305

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 306 NFFEARATEYSKAA 319


>gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula
           bermudensis HTCC2503]
 gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 340

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +D   W   N LTD ER ++ +   FF  S+ 
Sbjct: 19  KPFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWA--NKLTDKERNLLTQIFRFFTQSDV 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N +          E R  L   +  E +H   +  ++ ++G+ E E F+ + +  +
Sbjct: 77  EVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEA 135

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++  +               + +++ L  + VF    EG+  +  FA +++  R 
Sbjct: 136 MAAKHDYLGR------------FGVENERDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    + + ++   E   L T                LE  
Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARETGAL-TPAVADDIVDCCKTVVDLEDK 242

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     + Y++ IA+ R  Q+GL P+F    +P PW+ E+++  +  
Sbjct: 243 FIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEHA 302

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY +GA
Sbjct: 303 NFFEARATEYSKGA 316


>gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica
           ATCC 49814]
 gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814]
          Length = 345

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 18/319 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HW+P EVP+ +D   W     L D ER ++ +   FF  S+ 
Sbjct: 20  KPFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWA--GKLNDKERNLLTQIFRFFTQSDV 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N +          E R  L   +  E VH   +  ++ ++G+ + E F+ + E   
Sbjct: 78  EVGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++  +             + D + + L  + VF    EG+  +  FA +++  R 
Sbjct: 137 MAAKHDYLGK------------FSVDTEADILTSMAVFGGFTEGLQLFASFAMLMNFPRF 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    + + +    E   L TK  +            LE  
Sbjct: 185 NKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGAL-TKTVKDDITDCCQTVVKLEDK 243

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     + Y+++IA+ R  Q+ L+P++   E+P PW++E+++  +  
Sbjct: 244 FIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVDEHPIPWLTEILNGVEHA 303

Query: 334 NFFETRVTEYQQGA-ELKW 351
           NFFE R TEY +GA    W
Sbjct: 304 NFFEARATEYSKGATAGDW 322


>gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus CB15]
 gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus NA1000]
 gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter
           crescentus CB15]
 gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter
           crescentus NA1000]
          Length = 347

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+ 
Sbjct: 20  KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDV 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  +
Sbjct: 78  EVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEA 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++              T   D++ +  + L +F    EG+  +  FA +++  R 
Sbjct: 137 MKAKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH +  I + +    E     TK               +E  
Sbjct: 185 NKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVGMEDN 243

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  +     + Y++F+A+ R  Q+ L  ++   ENP PW+  ++   +  
Sbjct: 244 FIDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEHA 303

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 304 NFFEARATEYSKAA 317


>gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
 gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
          Length = 344

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
 gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
          Length = 344

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           conorii str. Malish 7]
 gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. Iowa]
 gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           africae ESF-5]
 gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
 gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii
           str. Malish 7]
 gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           rickettsii str. Iowa]
 gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae
           ESF-5]
 gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
          Length = 328

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               DA ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRTTEYSKAATTGSWE 315


>gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis
           URRWXCal2]
 gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis
           URRWXCal2]
          Length = 327

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    L   E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D  ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 336

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 153/326 (46%), Gaps = 21/326 (6%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGF 88
            P  Y WA+E + +    HW+P EVP+ DD+  WK       K+ LT  E+ ++ +   F
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRF 70

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F  ++  V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ 
Sbjct: 71  FTQADIEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSA 129

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           + +   +  K ++  Q               DA ++    L VF    EG+  +  FA +
Sbjct: 130 FLKYKEMKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIM 177

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L+  R NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++        
Sbjct: 178 LNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTI 237

Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              E A+       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E++
Sbjct: 238 VHFEDAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEML 297

Query: 328 DLKKEKNFFETRVTEYQQGAEL-KWD 352
           +  +  NFFE R TEY + A    W+
Sbjct: 298 NGVEHTNFFENRTTEYSKAATTGSWE 323


>gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           chaffeensis str. Arkansas]
 gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 324

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 14/320 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +   
Sbjct: 69  EVNNCYMKHYSNIFKPTEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +         F    K+  +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   + +RDE+LH    I + N    EN  +W    +Q+          LE  
Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           + +     G V  L++   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  
Sbjct: 239 FINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY + A E  W+
Sbjct: 299 NFFENRVTEYARAATEGTWE 318


>gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
 gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
          Length = 340

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 14/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I       ++ D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPNSNESLGDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+ ++   K  +M   A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           L+ ++   ++P  W+ +      +K NFFE++VT Y +G+ + +D
Sbjct: 296 LDRIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338


>gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
 gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
          Length = 346

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P +Y WA+E +      HWMP EVP+ +D   W     LT+ ER ++ +   FF 
Sbjct: 7   RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K N+  Q             + D D++  + L +F    EG+  +  FA +++
Sbjct: 124 DYEEMADKHNYMHQ------------FSVDTDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDE+LH    I + +    E   L TK  ++    +  +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGIIKMFHTFCEERDCL-TKAVKEDIIDICQKTVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+       G V  + A   ++Y+++IA+ R  Q+ L+P++   E+P PW+S +++ 
Sbjct: 231 LEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPWLSPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFE R TEY +GA
Sbjct: 291 VEHANFFEARATEYSKGA 308


>gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis
           alaskensis RB2256]
 gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 354

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HW+P EVP+ +D   W     ++D ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E + M+ 
Sbjct: 65  QADIEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++  Q               + D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYDEMRAKHDYMQQ------------FGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + +    E   L TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKERGCL-TKAVKEDIIDTCQKTVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G V  +     ++Y+++IA+ R  Q+G +P++   E+P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFETR TEY +GA
Sbjct: 291 VEHANFFETRATEYSKGA 308


>gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple
           nucleopolyhedrovirus]
          Length = 313

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   W  Y  A +  W   EV M  D   ++S   L DDER  IK  L FFA
Sbjct: 5   RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFES--KLNDDERYFIKHVLAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  N++  + R++   E + +   Q   E VH+  +  +I  L  DE E     N
Sbjct: 63  AADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  VP +  KA WA+++              ++D   L +  V + + EG++F   FA 
Sbjct: 123 AFEHVPCVRKKAQWAMKWI-------------ESDTATLAERMVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH +F          E     T        +M  E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYKTRVTEKLDSDT------ILSMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +    +P   +G+NA S  +Y++F+A+R   Q+G    F    NPF +M+  I
Sbjct: 224 AVAIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLGQPKYFNAR-NPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 351

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 17/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA+E +      HWMP EVP+ +D   W     ++D ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++                  D+D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYEEMKAKHDYM------------QLFGVDSDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDE+LH      +      E     TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGITRLFQAFVQER-DCMTKAVREDIIDCCQKTVR 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G V  ++A   ++Y+++IA+ R  Q+G +P++   E+P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGA 347
            +  NFFETR TEY + A
Sbjct: 291 VEHANFFETRATEYSKAA 308


>gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 348

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 18/319 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA++ +      HW+P EVP+ +D   W +   LTD ER ++ +   FF  S+ 
Sbjct: 19  KPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWAT--KLTDKERNLLTQIFRFFTQSDV 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N +          E R  L   +  E +H   +  ++ ++G+ + E F+ + E   
Sbjct: 77  EVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEYEE 135

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK ++  ++              + D++ L  + VF    EG+  +  FA +++  R 
Sbjct: 136 MAAKHDYLGKFGC------------ETDRDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    + + +    E   L TK  +            LE  
Sbjct: 184 NKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGAL-TKGVKDDIADCCKTVVSLEDK 242

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  +     + Y+++IA+ R  Q+ L  ++   E+P PW++E+++  +  
Sbjct: 243 FIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYGVEEHPIPWLTEILNGVEHA 302

Query: 334 NFFETRVTEYQQGA-ELKW 351
           NFFE R TEY +GA +  W
Sbjct: 303 NFFEARATEYSKGATQGDW 321


>gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
 gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
          Length = 324

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E +H   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D  ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
 gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
          Length = 351

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 17/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q  P +Y WA+E +      HW+P EVP+ +D   W     LTD ER ++ +   FF  +
Sbjct: 9   QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E +  + E 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  +               D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 AEMKDKHDYLQK------------FGVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDESLH    I + +    E   L TK  +            LE
Sbjct: 174 RFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKERQCL-TKAVKDDIADQCQTTVRLE 232

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G V  + A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGA 347
             NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAA 308


>gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis
           str. Jake]
 gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 324

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 14/320 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +   
Sbjct: 69  EVNNCYMRHYSNIFKPTEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +         F    K+  +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKKKYDYMQK---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   + +RDE+LH    I + N    EN  +W    + +          LE  
Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHELYEACKIIVSLEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           + +     G V  L+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  
Sbjct: 239 FINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY + A E  W+
Sbjct: 299 NFFENRVTEYARAATEGTWE 318


>gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 350

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 170/348 (48%), Gaps = 17/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   E   +  ++R++N   +++ +L  +KY WA++ Y +   +N W+P E+P+ +D   
Sbjct: 14  IFNPEGERDAANRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQ 73

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+D ER   +  L F  + +S   + +     R +S PE    L  Q F+E++H
Sbjct: 74  YERV--LSDYERRAYELVLSFLIALDSFQVDML-KDFARMISAPEVEMALTAQEFQESIH 130

Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           ++++Q+I+ S+       E++N +RE   +  +     +              +   +E 
Sbjct: 131 AYSYQFILESVVDPIKADEIYNYWREDEKLKERNEVVAEVYNEFI--------RKPSEEN 182

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                +   + E ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  +
Sbjct: 183 FIKAVIGNYILESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNL 242

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L++ E ++        A   EI +         +G+N    ++Y++++ N R  
Sbjct: 243 QKEQPELFSPEIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRIT 302

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
           QIGLEPL+   TENP  W+ +   +   + +FF+ +   Y +  ELKW
Sbjct: 303 QIGLEPLYPEITENPMKWIDDFRKINNTKTDFFQRKPQTYAKANELKW 350


>gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
 gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
          Length = 342

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y W ++ +L+    HW+P E+P+ +D+  W+    LT  E+ ++ +   FF  +
Sbjct: 29  VYKPFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQA 86

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    +   A  E +H   + +++ ++G+ E E ++ + + 
Sbjct: 87  DVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESE-YSAFLKY 145

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                  +  +E  + + VF    EG+  +  FA +L+  
Sbjct: 146 KEMKDKYDYM------------QNFNVNNKREIAKTVAVFSAFTEGLQLFASFAILLNFP 193

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH N  I + N    ENP L  +  +++           E
Sbjct: 194 RFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKKEITDACRTIVEHE 253

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G +  L A   + Y+++IANRR  Q+ L+ ++   ENP  W+  +++  +
Sbjct: 254 DAFIDLAFEMGPIEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKENPLEWIDTMLNGVE 313

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + +
Sbjct: 314 HMNFFEGRATEYSKAS 329


>gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 359

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 26  KPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADI 83

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E +  L   +  E +H   + +++ ++G+ E E +  + +  +
Sbjct: 84  EVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKA 142

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +               D  +E    L VF    EG+  +  FA +L+  R 
Sbjct: 143 MKDKYDYMQR------------FNVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPRY 190

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      E P +WT++ + +           E A
Sbjct: 191 NKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFEDA 250

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L A   ++Y+++IA+RR  Q+GL+  +   +NP  W+ ++++  +  
Sbjct: 251 FIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEHT 310

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE RVTEY + A    WD
Sbjct: 311 NFFENRVTEYTRSATTGSWD 330


>gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 328

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 28/326 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 28  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 84

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 85  DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 144

Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +    FN  +  P+I  K  WA+ + Q+ +               L +L V +
Sbjct: 145 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 190

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 191 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 247

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 248 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 304

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETR 339
             T NPFP+M   I L+ + NFFE R
Sbjct: 305 NVT-NPFPFMDN-ISLENKTNFFEKR 328


>gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
 gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
          Length = 313

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +   + L DDER  IK  L FFA
Sbjct: 5   RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDF--TSKLNDDERYFIKHVLAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  N++  + +++   E + +  +Q   E VH+  +  +I  L  DE E     N
Sbjct: 63  AADSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  K +WA+++  +                   +  V + + EG++F   FA 
Sbjct: 123 AFERMPCVRKKTDWAMKWINS-------------STATFAERMVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH +F     N        +  K       +M  E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYNT------RVHDKLAPDTVLSMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +    +P   +G+NA S   Y++F+A+R   Q+     F +  NPF +M+  I
Sbjct: 224 AVAIEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLHQPKHF-HARNPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++      
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGDD 305


>gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium acnes KPA171202]
 gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium
           acnes KPA171202]
 gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL074PA1]
 gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA2]
 gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA1]
 gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA1]
 gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA1]
 gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL056PA1]
 gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL001PA1]
 gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA2]
 gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA2]
 gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL045PA1]
 gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA2]
 gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA3]
 gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA1]
 gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA2]
 gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA3]
 gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA1]
 gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA4]
 gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL060PA1]
 gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL038PA1]
 gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA1]
 gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA3]
 gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA2]
 gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL097PA1]
 gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA1]
 gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA2]
 gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL020PA1]
 gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL099PA1]
 gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta
           [Propionibacterium acnes 266]
          Length = 328

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
 gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
          Length = 342

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 170/336 (50%), Gaps = 17/336 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA E Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++ PE    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTN 131

Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ++++ +RE  ++  +  +     Q+ +        ++   E      +   + EG
Sbjct: 132 PITRDKIYDQWREDKNLLERNKFIAGIYQSFN--------ENPTTENFLRTIMANYILEG 183

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENP ++T+   
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIM 243

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           ++ R M+      EI +         +G+N    E+Y+++++N R + IGLE L+   TE
Sbjct: 244 EEFRMMMKMGVEHEIKWGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITE 303

Query: 318 NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +P  W+     L   + +FFE +VT Y + A   +D
Sbjct: 304 HPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Boryong]
 gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 329

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E +  L   +  E +H   + +++ ++G+ E E +  + +  +
Sbjct: 69  EVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKA 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +               D  +E    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQR------------FNVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPRY 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      E P +WT++ + +           E A
Sbjct: 176 NKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G V  L A   ++Y+++IA+RR  Q+GL+  +   +NP  W+ ++++  +  
Sbjct: 236 FIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE RVTEY + A    WD
Sbjct: 296 NFFENRVTEYTRSATTGSWD 315


>gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia
           ruminantium]
 gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 324

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ 
Sbjct: 11  KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +   
Sbjct: 69  EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +         F    K+  +   + L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE  
Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLEDE 238

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           + +     G V  L+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  
Sbjct: 239 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 298

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY + A E  W+
Sbjct: 299 NFFENRVTEYTRAATEGTWE 318


>gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
 gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
          Length = 340

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I        + D+++       +      KY WA + +     N W P EV   DD+ 
Sbjct: 4   KKIYNPFSDETLTDRKVFGGNPQGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVR 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA 
Sbjct: 64  DYN--FNLTSAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEAN 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +   ++ M +    +  K ++     + L+         +   + L
Sbjct: 122 HSKSYAVMVEAICENTDLIYEMEKHDDMLRRKNDYISSVYEELAG--------EVSDDKL 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 174 LLAMVANQILEGIYFYSGFTSIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E   L+ K    K   M   A  LEI +         +G      E+Y+ ++ ++R   
Sbjct: 234 KERADLFNKRNVDKIYEMFETAGNLEIDWGKYITDNQIMGFTDDIIEEYIHYLVDQRLLA 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           IGLE  +   ++P  W+ +      +K NFFE++VT Y +G+ L +D
Sbjct: 294 IGLEKRYD-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
          Length = 342

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/331 (25%), Positives = 167/331 (50%), Gaps = 16/331 (4%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
            + +++ +   +KY WA E Y +  NN W+P E+ + +D+  +   + LTD ER    + 
Sbjct: 21  GSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDVKQF---SYLTDGERNAFDKI 77

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143
           + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++       
Sbjct: 78  ISFLNFLDSIQSENL-PNISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRD 136

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           ++++ +RE  ++  +  +     Q  +        ++   E      +   + EG++FY+
Sbjct: 137 KIYDQWREDKNLLERNKFIAGIYQRFN--------ENPTTENFLRTIMANYILEGIYFYS 188

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN  ++T+   ++ R 
Sbjct: 189 GFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEEFRM 248

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
           M+      EI +         +G+N    E+Y+++++N R + IGLE L+   TE+P  W
Sbjct: 249 MMKTGVEHEIKWGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEW 308

Query: 323 MSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +     L   + +FFE +VT Y + A   +D
Sbjct: 309 IENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 329

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ 
Sbjct: 16  KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 73

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +   
Sbjct: 74  EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 132

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +         F    K+  +   + L VF    EG+  +  FA +L+  R 
Sbjct: 133 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE  
Sbjct: 184 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLEDE 243

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           + +     G V  L+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  
Sbjct: 244 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 303

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY + A E  W+
Sbjct: 304 NFFENRVTEYTRAATEGTWE 323


>gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 310

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---DEGELF 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +      +   LF
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++               +  + L    + + + EG++F   F 
Sbjct: 122 NAIENVPTVKRKAEWVMKWI--------------SSDKPLTMRLIAFGLVEGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    + + + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G +P+F Y +NPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYMR-L 279

Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352
           +D++ + NFFE RVTEY++  +  L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL103PA1]
          Length = 328

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA1]
 gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA4]
 gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA3]
 gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA2]
          Length = 328

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           prowazekii str. Madrid E]
 gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
           str. Wilmington]
 gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia
           prowazekii]
 gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
 gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           prowazekii Rp22]
          Length = 324

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+  D+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q               D  ++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 346

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 16/347 (4%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +       +   +R++    +++ +L  +KY WA +       N W+P EVP+ DD   +
Sbjct: 10  LFNEHGERDWGKRRIIGGNPTNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDAKQY 69

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT DE+    R L F    +S++  + +  +  +++ PE    L    F EA+HS
Sbjct: 70  ---LELTADEQWAYDRMLSFVIFMDSILTVS-MPNLINYVTAPEINMCLSIHNFHEALHS 125

Query: 129 HTFQYIITSLGLDEGELF--NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++ Y++ S+   E   +  +++RE   +  +  +           +F     +   E  
Sbjct: 126 KSYGYVLESVVPAERRQYIYDLWREDRQLLERNRYIAN--------TFQLFADNPTDEHF 177

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   V EG++FY+GFA   +L R  KM G A + Q+I RDE  H+    +++N ++
Sbjct: 178 VRACMAQYVLEGIYFYSGFAFFYALARMGKMKGTATEIQFINRDEITHVAVFQNILNGLR 237

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +     R M+ +A   E+A+A   +     GL+    + Y++ +A++R   
Sbjct: 238 QERPQLFTPQLDADLRAMIRQAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHLADQRARA 297

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL+    NP  W+    +L + + +FFETRVT Y +   +  D
Sbjct: 298 LGFEPLYGNHPNPIKWVESFSNLNQTKADFFETRVTNYAKSTNIDLD 344


>gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA3]
          Length = 328

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  ++F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii RML369-C]
 gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii
           RML369-C]
          Length = 324

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q                 +++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Gardel]
 gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 329

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++ 
Sbjct: 16  KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 73

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +   
Sbjct: 74  EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 132

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +         F    K+  +   + L VF    EG+  +  FA +L+  R 
Sbjct: 133 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE  
Sbjct: 184 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKELYEACSVIVTLEDE 243

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           + +     G V  L+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  
Sbjct: 244 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 303

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY + A E  W+
Sbjct: 304 NFFENRVTEYTRAATEGTWE 323


>gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
          Length = 350

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 138/317 (43%), Gaps = 17/317 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
               P +Y WA++ +      HWMP E+P+ +DL  W S   L D ER ++ +   FF  
Sbjct: 20  FAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWAS--KLNDRERNLLTQIFRFFTQ 77

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+  V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F  + +
Sbjct: 78  SDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLD 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             ++  K ++              +   D   +  + L +F    EG+  +  FA +++ 
Sbjct: 137 YQAMRDKHDYM------------QSFGVDTHADICRTLAMFGGFTEGLQLFASFAMLMNF 184

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NKM G+ +   + +RDESLH    I + +    E     T+               L
Sbjct: 185 PRHNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTQAVADDIVDCCKTVVGL 243

Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E  +       G V  +     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   
Sbjct: 244 EDKFIDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGV 303

Query: 331 KEKNFFETRVTEYQQGA 347
           +  NFFE R TEY + A
Sbjct: 304 EHANFFEARATEYSKAA 320


>gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
 gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
          Length = 324

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++ 
Sbjct: 11  KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +   
Sbjct: 69  EVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  Q                 +++    L VF    EG+  +  FA +L+  R 
Sbjct: 128 MKDKYDYMQQ------------FGVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +           E A
Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFEDA 235

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++  +  
Sbjct: 236 FIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEHT 295

Query: 334 NFFETRVTEYQQGAEL-KWD 352
           NFFE R TEY + A    W+
Sbjct: 296 NFFENRATEYSKAATTGSWE 315


>gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 288

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 149/276 (53%), Gaps = 6/276 (2%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  
Sbjct: 1   MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60

Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  +    F     +PSI  KA + L++  ++   +    T++  + FL +L 
Sbjct: 61  LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++F+  FA +  L     + G+A    ++ RDES H+ F  + I   + E P
Sbjct: 120 CFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEP 179

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+    Q     M+ EA   E  +A + +  G  GL+     QY++++A++R   +GL 
Sbjct: 180 DLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLA 239

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P+F   +N  P+M  + D+++  NFFE RV+ YQ  
Sbjct: 240 PVF-RVKNSLPFMD-LQDVQELTNFFERRVSAYQVA 273


>gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
          Length = 348

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +       ++++++++    +++  L  +KYGWA   Y +   N W+P ++ +  D  
Sbjct: 8   KKLFNPSGIDSLNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDRV 67

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   N LT+ E+      L F    +S+  NNI   I  +++ PE    L  Q F+EA+
Sbjct: 68  DY---NNLTNYEKEAYDGILSFLIFLDSIQTNNI-PNISDYITAPEINLILSIQTFQEAI 123

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   E       R       + +  L       +  +     + D +  
Sbjct: 124 HSQSYQYIIESILPKET------RNYIYDKWREDKILFERNRYIAEIYQNFLDNPDDKNF 177

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + E ++FY GF     L   N+M+G ++  + I RDE  H+     +I +++
Sbjct: 178 ARVIVADYLLESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQQMIKEVQ 237

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP+ +    +     M  +A   EI++ +  +    +G+   + E Y +++AN R   
Sbjct: 238 NENPNFFD---ENIIYEMFEKAVEQEISWTNHIIGGNILGITEKTTESYTKWLANERLKS 294

Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           IGL+PL++ Y +NP+  +    D +     + NFFE  VT Y   + ++ WD
Sbjct: 295 IGLQPLYEGYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGWD 346


>gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
          Length = 342

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 170/348 (48%), Gaps = 17/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   +       ++++    +++ +L  +KY WA++ Y +    N W+P E+PM +D   
Sbjct: 6   IFNPQGDRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQ 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+   +  L F  + +S    N++    R+++ PE    L  Q F+EA+H
Sbjct: 66  YEK--DLSPYEKRAYEMVLSFLIALDSYQV-NMLKEFARYITAPELVMALTSQEFQEALH 122

Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S+++Q+I+ S+   +   E++N +R+   +  +     Q              +   +E 
Sbjct: 123 SYSYQFILESVVEPQVADEIYNYWRQDTVLMERNQVIAQLYNEFI--------RHPTEEN 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    V E ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  I
Sbjct: 175 FIKATFGNYVLESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTI 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K ENP L+T E ++        AT  EI +         +G+N    ++Y++++AN R  
Sbjct: 235 KQENPELFTPELEKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLT 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
           Q+G +PL+   TENP  W+ +   +   + +FF+ +   Y + +ELKW
Sbjct: 295 QLGYKPLYPEITENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA1]
 gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL092PA1]
          Length = 328

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/314 (30%), Positives = 170/314 (54%), Gaps = 4/314 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEYQQGA 347
           NFFE   T Y+  A
Sbjct: 309 NFFEATNTSYEVNA 322


>gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 326

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 29/329 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L + +    + P+KY   W+ Y       W   E+    D   +K    L  DE+ 
Sbjct: 7   NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFK---KLNQDEQR 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FF++S+++V  N+   +   +   E +     Q   E +HS  +   I ++  
Sbjct: 64  FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E     N    VP I AK +W L++                 +E      V  V+ E
Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKWV--------------KSEESFATRMVAQVISE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L   N M G+    + I RDE +H ++ I + + ++        K  
Sbjct: 170 GLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQ-------NKLS 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q+K + M  +A   E  +  E++P   +G+NA   EQY++F+A++   ++G   +FK   
Sbjct: 223 QEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIFKVD- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           NPF WM E I ++ + NFFE R T+YQ+ 
Sbjct: 282 NPFTWM-EAISIEGKTNFFEHRPTQYQRA 309


>gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
 gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
          Length = 346

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVEHLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345
             W+    ++   + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336


>gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           hominis ATCC BAA-381]
 gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 340

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 14/347 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I        + ++++ +     +      KY WA + +     N W P EV   DD+ 
Sbjct: 4   KKIYNPFSNETLTERKIFSGNPQGILNFTKAKYVWALKLWDIMEANTWFPREVDTTDDVR 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  E+ M +       S +S   NN+   I  +++ PE    L RQA+EEA 
Sbjct: 64  DYN--FNLTPAEKRMYELVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEAN 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++  ++ ++  +  +++ M +    +  K ++     + L+         + D+  L
Sbjct: 122 HSKSYAVMVEAICQNTDQIYEMEKFDDVLREKNDYISSIYEELAG--------EVDENKL 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN ++
Sbjct: 174 LLAMVANQILEGIYFYSGFCSIYALARSGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  +   K   M  +A  LEI +         +GL     E+Y+ ++ + R   
Sbjct: 234 KERPDLFNDKNIAKIYEMFEKAGELEIKWGKYITQNQIMGLTDEIIEEYIHYLVDNRLSA 293

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352
           IGL   +    +P  W+ +      +K NFFE++VT Y +G+ L +D
Sbjct: 294 IGLNKKYNAR-HPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LNFD 338


>gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
 gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEQLLERNKFIAGIYEKFNKEPEIYNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENP+++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    ++Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FREMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAVFDFD 339


>gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 290

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 134/302 (44%), Gaps = 31/302 (10%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
              +  W   EV M  D   + +   LT +E+  IK  L FFA+S+ +V  N+V      
Sbjct: 1   MHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSE 57

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQ 164
           +   E + +   Q   E +HS  +  +I +L  D+ E    FN    +PSI  KA WA +
Sbjct: 58  VQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQK 117

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           +               A         V +   EG++F   FA I  L +   M G+    
Sbjct: 118 WI--------------ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSN 163

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I RDE LH +F   +   I  +               ++ EA  +E  +  E++P   
Sbjct: 164 ELISRDEGLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSL 214

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+ + NFFE R T YQ
Sbjct: 215 IGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQ 272

Query: 345 QG 346
           +G
Sbjct: 273 KG 274


>gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 339

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 20/333 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP+++   W+ Y +A +  W   EV +  D   W+  N L +DER  +K  L FFA
Sbjct: 7   RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQ--NKLNEDERHFLKHILAFFA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           S++S+V  N++  +   ++  E R +  +Q F E VHS  +  +I     DE E     N
Sbjct: 65  SADSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLN 124

Query: 148 MYREVPSITAKANWALQYT------QTLSSPSFTTGTK---DADQEFLQDLFVFYVVFEG 198
            + ++  +  KA WAL++T        L +P+     +         L    V + + EG
Sbjct: 125 AFNDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEG 184

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  +     M G+    + I RDE LH NF     N+   E+     K   
Sbjct: 185 VFFSGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEH----DKLSS 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   M  EA  +E  +    +P   +G+N  S  +Y++F+A+R    +     F    N
Sbjct: 241 ERILDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLNQPKHF-MASN 299

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M+  I ++ + NFFE RV EY++    + 
Sbjct: 300 PFNFMTN-ISMEGKTNFFERRVGEYRRFGAGQD 331


>gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
 gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
          Length = 342

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 17/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   E       +R++    +++ +L  +KY WA++ Y +    N W+P E+ M +D   
Sbjct: 6   IFNPEGDREASKRRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQ 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+   +  L F  + +S    N++    R L+ PE    +  Q F+EA+H
Sbjct: 66  YERV--LSAHEKRAYEMVLSFLIALDSYQV-NMLKEFARFLTAPELTMAITAQEFQEALH 122

Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S+++Q+I+ S+       E++N +RE        +  L     + +  +    +  D+E 
Sbjct: 123 SYSYQFILESVVDPVKADEIYNYWRE--------DKVLMERNRVIADLYNDFVRKQDEET 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    V E ++FY+GFA   +LGR  KM+   +Q +YI RDE  H++   ++I  +
Sbjct: 175 FLKAVFGNYVLESLYFYSGFAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTL 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K ENP L+T E ++  +     A   EI +         +G+N    ++Y++++AN R  
Sbjct: 235 KKENPELFTPEMEKWVKEFFRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLT 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
           QIG EP+F   TENP  W+     +   + +FF+ +   Y + +ELKW
Sbjct: 295 QIGYEPVFPDVTENPMKWIDTFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 344

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   E    ++ ++++    +++  L  ++  WA + Y +   N W+P +V +  D  
Sbjct: 4   KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKN 63

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+EA+
Sbjct: 64  DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++QYII S+   +       R++     + +  L    +  +  +     +   E  
Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++ +IK
Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN R   
Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
 gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
          Length = 346

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345
             W+    ++   + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336


>gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 345

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 17/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++              T    +DQ+  + L +     EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLA------------TFDVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDESLH    I + +    E   L TK+ +     +      +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQERQCL-TKQVKDDILNICQRTVRIE 232

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V  +     ++Y+++IA+ R  Q+GL P++   E+P PW++ +++  +
Sbjct: 233 DAFIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGA 347
             NFFETR TEY + A
Sbjct: 293 HANFFETRSTEYSKAA 308


>gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA2]
 gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL044PA1]
 gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium sp. P08]
          Length = 324

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 173/314 (55%), Gaps = 8/314 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P EV + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++GLEP + +  NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIPGMNAD----YVKYLADRRLEELGLEPEY-HVANPAKWMATANDTLQLV 304

Query: 334 NFFETRVTEYQQGA 347
           NFFET  T Y+  A
Sbjct: 305 NFFETTNTSYEVNA 318


>gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp.
           K31]
 gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31]
          Length = 346

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y WA E +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+ 
Sbjct: 19  KPFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDI 76

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  +
Sbjct: 77  EVADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQA 135

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K ++  +               + + +  + L +F    EG+  +  FA +++  R 
Sbjct: 136 MRDKHDFMQK------------FGVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRF 183

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           NKM G+ +   + +RDESLH    I + +    E     T E             ++E A
Sbjct: 184 NKMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAET-KCVTPEVAADIVECCKSVVIMEDA 242

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  +     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   +  
Sbjct: 243 FIDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHA 302

Query: 334 NFFETRVTEYQQGA 347
           NFFE R TEY + A
Sbjct: 303 NFFEARATEYSKAA 316


>gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
 gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 352

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   E    ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 11  INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             + +   LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 71  TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSITAPEISLCMAEQISQEG 126

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   +   ++++ +R    +  +  +  +  Q            DA  
Sbjct: 127 MHNQSYQYLIETIIPPDRRTQVYDFWRTDKVLKDRCEFIAKLYQKYID--------DATP 178

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 179 ENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 238

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH       ++   M   A   E  + +  +    +G+   S E+Y +++AN R
Sbjct: 239 EARKVFPHSV-----EQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIR 293

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGLEPL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 294 LRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
 gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
          Length = 352

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 151/350 (43%), Gaps = 18/350 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI   E   +   + +L   + ++  L  +KY WA + Y     N W+P  V +  D+  
Sbjct: 13  PIFNPEGNDDPAKRGILKGNTTNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQD 72

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LTDDER      L F    +S+   NI   I  ++  PE    L   A++EA+H
Sbjct: 73  YK---ELTDDERQAYDEILSFLVFLDSIQTTNI-PNIAAYVKAPEITIDLSIHAYQEAIH 128

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y I S+   E       RE      K +  L       +  +    ++   E   
Sbjct: 129 SQSYGYTIESVVPAEK------REEVYYWWKKDPILFERNKYIADIYQKFLEEPTLENYG 182

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           ++ +   + EG++FY GF    +L   N M G A+  +YI RDE  H+      +  +  
Sbjct: 183 EVLIGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTD 242

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E    +    + K   M   A   E  ++ + +    +G+N  S E Y  +IAN+R   +
Sbjct: 243 EGFKKY--LTKDKIYDMFRIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLKAL 300

Query: 308 GLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           GLEP+F    NP+  +  + D       + NFFE  VT Y Q   ++ WD
Sbjct: 301 GLEPIFPDRGNPYEHLERIADTGGEANVKANFFEATVTSYNQANAVEGWD 350


>gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           kaustophilus HTA426]
          Length = 346

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345
             W+    ++   + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336


>gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
 gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
          Length = 313

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +     LTD+ER  I++ L FFA
Sbjct: 5   RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQ--KLTDNERNFIEKILAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  NI+  + R +   E + +  +Q   E +H+  +  +I +L  DE +     N
Sbjct: 63  AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  KA WA++Y              + +   L +  + + + EG++F   FA 
Sbjct: 123 GFESMPCVRRKAEWAMKYI-------------ENENVTLAERLIAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH NF     N    +   + T         M  E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDVPT------VSDMFAE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+    ++ +TENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKYPKIY-HTENPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 352

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI       +   + +L   + ++  L  +KY WA + Y     N W+P  V +  D+  
Sbjct: 13  PIFNPNGNDDPTKRGILYGNTTNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLD 72

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT+DER      L F    +S+   NI   I  ++  PE    L   A++EA+H
Sbjct: 73  YK---ELTEDERQAYDEILSFLVFLDSIQTTNI-PNIAAYVKAPEITIDLSIHAYQEAIH 128

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y I S+   +      +RE      K +  L       +  +    ++   E   
Sbjct: 129 SQSYGYTIESVIPPQ------HRETVYYWWKKDPILFERNKYIADIYQKFLEEPTMENYG 182

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           ++ V   + EG++FY GF    +L   N M G A+  +YI RDE  H+      +  +  
Sbjct: 183 EVLVGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTD 242

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E    +    + K   M   A   E  ++ + +    +G+N  S E+Y  ++AN+R   +
Sbjct: 243 EEFKKYLP--KDKIYEMFKVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLKAL 300

Query: 308 GLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           GL+P+F  T NP+  +  + D       + NFFE  VT Y Q + ++ WD
Sbjct: 301 GLDPIFPDTPNPYEHLERIADTGGEGNVKANFFEATVTSYNQASAVEGWD 350


>gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus]
          Length = 419

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 32/338 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           V+   +     D   L   K    Y   ++ Y       W+  E+ M  D   W      
Sbjct: 93  VEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDA--- 149

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           + DE+  +K  L FFAS + +V  NI L     +  P+ RQ+   Q   EAVH  ++  +
Sbjct: 150 SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLL 209

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E        + +P I  KA WA ++                +   L +  V
Sbjct: 210 IQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLV 256

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG+ F   F  I  L +  K  G++     I RDE LH    + +   ++ + P 
Sbjct: 257 GFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLRNKLP- 315

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 Q++   +   A  +E  +    +P   +G++  S  +Y++F+A+   +Q+G + 
Sbjct: 316 ------QERVHEIFEHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDK 369

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++    NPF WM  +I L+ + NFFE RV EY +   L
Sbjct: 370 VYNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405


>gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
 gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
          Length = 355

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 14  INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             + +   LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 74  TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSVTAPEVSLCMAEQISQEG 129

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   ++++ +R    +  +  +     Q                
Sbjct: 130 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDH--------PTS 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 182 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH        +   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 242 EARKVFPHSV-----DQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 296

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 297 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353


>gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1]
 gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1]
          Length = 419

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 35/359 (9%)

Query: 1   MANNTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNH 53
           +   T   P +  +K ++   V+   +     D   L   K    Y   ++ Y       
Sbjct: 72  LKRTTIHLPTEFRKKEMDGEIVEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALF 131

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  E+ +  D   W+     + DE+  +K  L FFAS + +V  NI L     +  P+ 
Sbjct: 132 WVVEEIDLSGDSKDWEDA---SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLS 170
           RQ+   Q   EAVH  ++  +I +   D  E        + +P I  KA WA ++     
Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN--- 245

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                      +   L +  V +   EG+ F   F  I  L +  K  G++     I RD
Sbjct: 246 ----------PETASLAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH    + +   +K   P       +++   +   A  +E  +    +P   +G++  
Sbjct: 296 EGLHATASVLIYKHLKNRLP-------RERVHEIFKHAVSVECEFISSALPVALIGISEK 348

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           S  +Y++F+A+   +Q+G + ++    NPF WM  +I L+ + NFFE RV EY +   L
Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405


>gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
 gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
          Length = 352

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 155/358 (43%), Gaps = 28/358 (7%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D
Sbjct: 10  SINPIFNPGGDDAIENRSIWFGNTTNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  + +   LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E
Sbjct: 70  VTDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSITAPEISLCMAEQISQE 125

Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            +H+ ++QY+I ++   E   +++  +R    +  +  +  +  Q            D  
Sbjct: 126 GMHNQSYQYLIETIIPPERRTQVYEFWRTDTVLKDRCEFIAKLYQKYID--------DPT 177

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I
Sbjct: 178 SENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 237

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            + +   PH       ++   M   A   E  + +  +    +G+   S E+Y +++AN 
Sbjct: 238 PEARKVFPHSV-----EQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANI 292

Query: 303 RCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           R   IGLEPL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 293 RLRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A]
 gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A]
          Length = 354

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 160/356 (44%), Gaps = 28/356 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +PI   +    ++++ +    + ++ QL  ++Y WA   Y     N W+P ++ +  D+ 
Sbjct: 14  NPIFNPDGDDAIENRAIWFGNTTNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQDVT 73

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   + LT+DER      L +    +S+   NI   +   ++ PE    +  Q  +E +
Sbjct: 74  DY---SNLTEDERYAYDGILSYLTFLDSIQTCNI-PHLKNSITAPEVSLCMAEQISQEGM 129

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++QYII ++       +++  +RE   + ++  +  +  Q            D   E
Sbjct: 130 HNQSYQYIIETIVPPDRRNQVYEFWREDKVLRSRCEFIAKIYQKYID--------DPTAE 181

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I +
Sbjct: 182 NYFTALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPE 241

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            +   PH       ++   M   A   E  + +  +    +G+   S EQY +++AN R 
Sbjct: 242 ARKVFPH-----STEQIYEMFDTAVNHECRWTNHIVGSNILGITESSTEQYTKYLANIRL 296

Query: 305 HQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
             IGLEPL+   ++T++P+  +    D KK    + NFFE+ VT Y   + +  WD
Sbjct: 297 RSIGLEPLYTGEEFTKSPYSHLERFSDTKKDGHTKANFFESTVTSYVMSSGVSGWD 352


>gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D12]
          Length = 348

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 20/359 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E   ++ +++++    +++  L  +K+ WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +++   LT  ER      L F    +S+  NN+   I  +++ PE    L  
Sbjct: 61  DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNL-PNISDYITAPEVNLLLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   E       R++     + +  L       +  +    +
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKES------RDLIYDKWRDDKVLFERNRFIAQIYQDFIE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   +    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+    
Sbjct: 171 ETSDQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQ 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I +IK EN + +    +++ R M   A   EI +    +    +G+   + E Y +++
Sbjct: 231 KIIREIKAENHNFF---EEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWL 287

Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           AN R   IGL P+++  T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 288 ANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 346


>gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
 gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
          Length = 344

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 3   INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             + +   LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 63  TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSVTAPEVSLCMAEQISQEG 118

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   ++++ +R    +  +  +     Q                
Sbjct: 119 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDI--------PTS 170

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 171 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH        +   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 231 EARKVFPHSV-----DQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 285

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 286 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342


>gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
 gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
          Length = 359

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   E   +V+++ +     +++ QL  ++Y WA   Y     N W+P ++ +  D+
Sbjct: 18  INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT DER      L +    +S+   NI   +   ++ PE    +  Q  +EA
Sbjct: 78  VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNI-PHLKSSITAPEISLCMAEQVSQEA 133

Query: 126 VHSHTFQYIITSLGLDEGELF--NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   +   F    +R    +  +  +  ++ Q            +   
Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYID--------NPTS 185

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 186 ENYFVALLADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 245

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +     PH       ++   M   A   E  + +  + +  +G+   S EQY +++AN R
Sbjct: 246 EAMQTFPHSV-----EQIYEMFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANAR 300

Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAEL-KWD 352
              IGL+PL+   +Y+++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 301 LRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357


>gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 345

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 16/316 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y W ++ +L+    HW+P EVP+ +D+  W+    L   E+ ++ +   FF  +
Sbjct: 32  VYKPFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQK--KLLPHEKNLLTQIFRFFTQA 89

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    +   A  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 90  DVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETE-YSAFLKY 148

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++                     +E  + + VF    EG+  +  FA +L+  
Sbjct: 149 KEMKDKYDYM------------QNFNMGDKREIAKTVAVFSAFTEGLQLFASFAILLNFP 196

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH N  I + N    ENP L     +++           E
Sbjct: 197 RFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKKEIYEACSTIIEHE 256

Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G +  L A   ++Y+++IANRR  Q+ L  L++  ENP  W+ ++++  +
Sbjct: 257 DAFIDLAFEMGDIEGLKAEEVKKYIRWIANRRLAQLRLNDLYEVKENPLTWLDDMLNGVE 316

Query: 332 EKNFFETRVTEYQQGA 347
             NFFE R TEY + +
Sbjct: 317 HMNFFEGRATEYSKAS 332


>gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
 gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
          Length = 339

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 20/330 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP+++   W  Y +A +  W   EV +  D   W +   L + ER  IK  L FFA
Sbjct: 7   RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCT--KLNERERFFIKHILAFFA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           S++S+V  N++  +   +   E R +  +Q   E VHS  +  +I     +E E     N
Sbjct: 65  SADSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLN 124

Query: 148 MYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            + +V  +  KA WAL++T++              + T    +    L    V + + EG
Sbjct: 125 AFEDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEG 184

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  +     M G+    + I RDE LH NF     N    E      K   
Sbjct: 185 VFFSGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYN----EYIDERDKMSS 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   M  EA  +E  +    +P   +G+N+ +  +Y++F+A+R   ++     F  T N
Sbjct: 241 AEILDMFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQQPKHFN-TPN 299

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF +M+  I L+ + NFFE RV EY++   
Sbjct: 300 PFNFMNN-ISLEGKTNFFERRVGEYKRFGA 328


>gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
 gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
          Length = 258

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 50/302 (16%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   EV + +D   W+    L  +E+  +   L FFA+S+ +V  N+V    + +  P
Sbjct: 1   SFWTTEEVDLGEDWKDWQ---KLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIP 57

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQT 168
           E + +   Q   E +HS  +  +I +   D  E    FN  + +P +  KA+WAL++  +
Sbjct: 58  EAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                        D+    +  V +   EG++F   FA I    +   + G+    + I 
Sbjct: 118 -------------DESTFAERLVAFAAVEGIFFSGSFAAIFWFKKRGLLPGLTFSNELIS 164

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   + + +    P         + + ++ +A  LE  Y  E +P   +G+N
Sbjct: 165 RDEGLHCDFACLLFSHLNHPTP-------VSRIQEIIRDAVRLEEEYLSEALPVALIGMN 217

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           A    QY+QF+A+R   ++                        + NFFE RV EYQ+   
Sbjct: 218 ARLMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQKMNV 253

Query: 349 LK 350
           + 
Sbjct: 254 MT 255


>gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
 gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
          Length = 344

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 162/350 (46%), Gaps = 20/350 (5%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++ +++++    +++  L  +K+ WA + Y +   N W+P +V +  D   +
Sbjct: 6   LFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKVDLTQDKNDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   LT  ER      L F    +S+  NN+   I  +++ PE    L  Q F+EA+HS
Sbjct: 66  EN---LTVPEREAYDGILSFLIFLDSIQTNNL-PNISDYITAPEVNLLLSIQTFQEAIHS 121

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++QYII S+   E       R++     + +  L       +  +    ++   +    
Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKVLFERNRFIAQIYQDFIEETSDQNFAK 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I +IK E
Sbjct: 176 VLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           N + +    +++ R M   A   EI +    +    +G+   + E Y +++AN R   IG
Sbjct: 236 NHNFF---EEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWLANERLRTIG 292

Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           L P+++  T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 293 LAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a]
          Length = 342

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 142/323 (43%), Gaps = 28/323 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +NQ    ++   +  Y       W   E+ + +D+A W   +  ++DE+  I   L FFA
Sbjct: 32  LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           S + +V  N+ +     +  P+ R +   Q   E++H  T+  +I +   D  +   +  
Sbjct: 89  SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             +E+P IT KA W   +              D +   L +  V +   EG+ F   F  
Sbjct: 149 SIQEMPIITKKAQWVTAWM-------------DPEVASLAERLVAFTCVEGVQFSGAFCA 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  L +  +  G+      I RDE LH    + + N +K   P             +  +
Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLP-------VAVVHDIFTD 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  LE  +  E++P   +G+NA +   Y++++++    ++G   LF  T+NPF WM+ +I
Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
            ++ + NFFE RV EY +   + 
Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSMT 329


>gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate
           reductase beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 410

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 30/306 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 54  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 110

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 111 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 170

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +PSI  KA WA ++               A         V +   EG
Sbjct: 171 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 216

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 217 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 268

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  +  
Sbjct: 269 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVST- 326

Query: 319 PFPWMS 324
           PF +M 
Sbjct: 327 PFDFME 332


>gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. novicida
           U112]
 gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta
           subunit [Francisella novicida U112]
 gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549]
 gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida Fx1]
          Length = 410

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDK 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta
           subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 410

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548]
 gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548]
          Length = 410

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDK 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
 gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
          Length = 344

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LT  E+   
Sbjct: 20  MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTAREQDAF 76

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 77  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    +  + E L    VF V+ EG++
Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEKPNVENLLRSIVFDVILEGLF 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +R+   +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345
             W+    ++   + +FFE +  +Y +
Sbjct: 308 LRWIKAYEEVDLGKSDFFEQKPRQYTK 334


>gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 410

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica LVS]
 gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase
           beta subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 410

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida 3523]
          Length = 410

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405


>gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
 gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
          Length = 313

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +     LTD+ER  I++ L FFA
Sbjct: 5   RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQ--KLTDNERNFIEKILAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++S+V  NI+  + R +   E + +  +Q   + +H+  +  +I +L  DE +     N
Sbjct: 63  AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  KA WA++Y              D ++  L +  V + + EG++F   FA 
Sbjct: 123 GFENMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH NF     N    +     T         M  E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDAPT------VNDMFSE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+    ++ YTENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKYPKMY-YTENPFEFMNN-I 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
 gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
          Length = 344

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   +     + + +    + ++ QL  ++Y WA   Y     N W+P ++ +  D+
Sbjct: 3   INPIFNPDGDDKTEHRSIWFGNTTNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   + LT  ER      L +    +S+   NI   I   ++ PE    +  Q  +E 
Sbjct: 63  TDY---SNLTPAERYAYDGILSYLTFLDSVQTCNI-PHIKSSITAPEVSLCMAEQISQEG 118

Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   +++  +R    +  +  +   + Q            +   
Sbjct: 119 MHNQSYQYIIETVIPTEHRSKVYEFWRTDKVLRDRCEFVASFYQKYVD--------NPTP 170

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EGM+FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 171 ENYFVSLLADFLLEGMYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                 P+       ++   M   A   E  + +  +    +G+   S E Y +++AN R
Sbjct: 231 MAMDVFPY-----SSEQIYEMFATAVEHECRWTNHIVGNDILGITERSTEHYTKYLANIR 285

Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 286 LRSIGLDPLYKGENYQKSPYSHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342


>gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct]
          Length = 445

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 127 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 185

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 186 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 244

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +    T              +  L       V  EG+  +  FA +L+  R 
Sbjct: 245 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 291

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE  
Sbjct: 292 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 351

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++     
Sbjct: 352 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 411

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 412 NFFENRVTEYEVAGLTGSWD 431


>gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
          Length = 344

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 18/318 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            +   P +Y WA+E ++ +   HW+ TEVPM +D+  ++    LTD ER  + + L FF 
Sbjct: 30  RDYYKPFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQ--KLTDSERDFLTKILRFFT 87

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +  V+   V +       PE R  L   A  EAVH   + ++I +LGL E        
Sbjct: 88  QGDIDVSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPESI------ 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
                    N  LQY    +   F         +    +  F    EGM  ++ F  +L+
Sbjct: 142 --------YNEFLQYEAMAAKHDFFNEVCRDKGDLAAQIAAFSAFTEGMQLFSSFVMLLN 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R   M G+ +   + + DE+LH      +  +   ENP LWT E + K   +      
Sbjct: 194 FTRCGTMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVMVD 253

Query: 271 LEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +         +          Y+++IA+RR   +GL+ +FK T NP PW+  ++ +
Sbjct: 254 LEDKFIDLAFGVSEMKRLTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAMLGV 313

Query: 330 KKEKNFFETRVTEYQQGA 347
               NFFE RV +Y +GA
Sbjct: 314 T-HTNFFENRVVDYAKGA 330


>gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius]
          Length = 246

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 26/269 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P++Y   W+ Y  A  + W   EV +  DL  W   + L D+ER  
Sbjct: 1   EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---DSLKDEERYF 57

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D
Sbjct: 58  ISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 117

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E    FN    +P +  KA+WAL +                      +  V +   EG
Sbjct: 118 PKERDFLFNAIETMPCVKKKADWALNWI-------------GDKNAQYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K  +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           +  + ++  A  +E  +  + +P   +G+
Sbjct: 218 ETVKKIIVNAVAIEQEFLTDALPVKLIGM 246


>gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus
           floridanus]
          Length = 343

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 42/316 (13%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++    +  +Q  E+  N + + +L    +   + P++Y   W+ Y  A  + W   EVP
Sbjct: 42  LSKTKAVQKVQLKEE-FNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVP 100

Query: 61  MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           +   D   W+    L  DER  I   L FFA+S+ +V  N++    + +   E R +   
Sbjct: 101 LHKLDKKDWEE--KLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGF 158

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D  E    FN    +PS+  KANWAL +           
Sbjct: 159 QIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH-------- 210

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                               E   F      I  L +   M G+    + I RDE LH +
Sbjct: 211 --------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHCD 250

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +         H+  K   ++ ++++ +A  +E  +  + +P   +G+N      Y+
Sbjct: 251 FACLMFK-------HIVQKPSFERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSYI 303

Query: 297 QFIANRRCHQIGLEPL 312
           +F+A+R    +G E +
Sbjct: 304 EFVADRLFVALGFEKV 319


>gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
 gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
          Length = 355

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 28/363 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           ++    ++PI        ++++ M     +++ QL  ++Y WA   Y     N W+P  +
Sbjct: 8   LSERMPITPIFNPNGDDRIENRTMWFGNITNLMQLNDVRYTWAVGLYKQMRENFWIPERL 67

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  +     LT+DER   +  L +    +S+   NI   +   ++ PE    +  
Sbjct: 68  DITQDVTDY---WNLTEDERYAFEGILSYLTFLDSVQTCNI-PHLKASVTAPEISLCMAE 123

Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q  +E +H+  +QY+I ++       E+++ +R    + A+  +     Q   +      
Sbjct: 124 QISQEGMHNQAYQYMIETIIPLERRSEVYDFWRTDKVLKARCEFIAGLYQKYIN------ 177

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               + +      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+  
Sbjct: 178 --QPNIDNYFTALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +I +     PH   K        M   A   E  + +  +    +G+   S EQY +
Sbjct: 236 YQKIIAEAMQTFPHSVDK-----VYEMFDTAVHHECRWTNHIVGDNILGITESSTEQYTK 290

Query: 298 FIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   IGL+PL+   KY ++P+  +    D KK    + NFFE  VT Y   + + 
Sbjct: 291 YLANIRLKAIGLKPLYADEKYQKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350

Query: 351 -WD 352
            WD
Sbjct: 351 GWD 353


>gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 345

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 28/322 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+ Y   W  Y     + W    V ++ DL  W     +TD+ER  
Sbjct: 38  EPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDW---MRMTDEERHF 94

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L F A+S  +V+ N+V    + +   E R +   Q   E +HS  +  +I +   D
Sbjct: 95  ISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKD 154

Query: 142 EGELF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E     N    +P +   A+W L++              D+   F + L  F  V +G
Sbjct: 155 PKEKETLINATETMPCVKKMADWVLKWI------------TDSKATFGERLVTFAAV-KG 201

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++       I  L +   M+G+    + I RDE LH +F   +         HL  K   
Sbjct: 202 IFLSGNVPSITWLTKRGLMLGLTFSNELIFRDEGLHTDFACLLFK-------HLDQKPPL 254

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ +A  +E  +    +    VG++     +Y++F+A+R  +++G   ++  + N
Sbjct: 255 TVITHIICKAVTIEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAVY-RSSN 313

Query: 319 PFPWMSEVIDLKKEKNFFETRV 340
           PFP+M  ++  + + N FE RV
Sbjct: 314 PFPFMD-LLSQQGKTNGFEKRV 334


>gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 336

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 127/304 (41%), Gaps = 29/304 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +PSI  KA WA ++               A         V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G   ++ +  +
Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTH 299

Query: 319 PFPW 322
              W
Sbjct: 300 SISW 303


>gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
 gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
          Length = 342

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 32/338 (9%)

Query: 20  DDKRMLNARSDVNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +     ++  D   L       +Y   +  Y       W   E+ + +D+  W   +  +
Sbjct: 17  EPMCHEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECW---DKSS 73

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DE+  I   L FFAS + +V  N+ +     +  P+ R +   Q   E++H   +  +I
Sbjct: 74  SDEQHFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILI 133

Query: 136 TSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   +   + ++    +E+P I  KA W   +              D +   L +  V 
Sbjct: 134 QTYVKNSQQQSKILRSVQEMPIIRKKAQWVTSWM-------------DPETCSLAERLVA 180

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG+ F   F  I  L +  +  G+      I RDE LH    + + N +K   P  
Sbjct: 181 FTCVEGVQFSGAFCAIYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLP-- 238

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                      +  +AT +E  +  E +P   +G+NA +   Y+++I++    ++G   L
Sbjct: 239 -----VAVVHDIFGQATTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKL 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F  ++NPF WM+ +I ++ + NFFE RV EY +   + 
Sbjct: 294 FN-SKNPFEWMT-MIGMEGKSNFFEGRVAEYSKAGSMT 329


>gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97]
          Length = 317

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 28/283 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P      +    ++  L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 60  AETQVVKP---KTPKELEAEEPRLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q 
Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   ++ +    F     +P I  KA+WA+++ Q           
Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 224 -DKNSTFSQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
             + +       HL  +        ++ EA  +E  +  + +P
Sbjct: 282 CLLFS-------HLNYRPDPNAVEAIITEAVTIEQEFLTDALP 317


>gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
 gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
          Length = 355

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 28/363 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           ++     +PI   +    ++++ M     +++ QL  ++Y WA   Y     N W+P  +
Sbjct: 8   LSQTMPKTPIFNPDGDDRIENRTMWFGNITNLMQLNDVRYNWAVGLYKQMRENFWIPERL 67

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  +     LTD+ER      L +    +S+   NI   +   ++ PE    +  
Sbjct: 68  DITQDVTDY---WNLTDEERYAFDGILSYLTFLDSIQTCNI-PHLKSSVTAPEISLCMAE 123

Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q  +E +H+  +QY+I ++       ++++ +R    + A+  +     Q          
Sbjct: 124 QISQEGMHNQAYQYMIETIIPLEKRNQVYDFWRTDKVLKARCEFIAGLYQKYIDT----- 178

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                 E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+  
Sbjct: 179 ---PSIENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +I +     PH       ++   M   A   E  + +  +    +G+   S EQY +
Sbjct: 236 YQRIIVEAMETFPHSV-----EQIYEMFDTAVQHECRWTNHIVGDNILGITESSTEQYTK 290

Query: 298 FIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R + IGL+PL++   Y ++P+  +    D KK    + NFFE  VT Y   + + 
Sbjct: 291 YLANHRLNTIGLKPLYEDEKYKKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350

Query: 351 -WD 352
            WD
Sbjct: 351 GWD 353


>gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c]
 gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 269

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 27/279 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL+ W   + L DDE+  IK  L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
            + +   E R +   Q   E VHS  +  +I +   D  E    FN    +P I  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++               ++     +  V +   EG++F   FA I  L +   + G+ 
Sbjct: 118 ALKWI-------------SSNSANFAERIVAFAAVEGIFFSGSFASIFWLKKRGLLPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + N +  + P+        +   +L EA ++E  +  + +P
Sbjct: 165 FSNELISRDEGLHTDFACLMYNYVVQKPPN-------SRVIEILKEAVVIEKDFLTDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              +G+N     QY++F+A+R  +++  E  +   +NP 
Sbjct: 218 VRLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNPI 255


>gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 327

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 21/321 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF 
Sbjct: 9   RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E        
Sbjct: 67  QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPETV------ 120

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQIL 209
                    N  LQY        F  G  +  QE +   +  F    EGM  ++ F  +L
Sbjct: 121 --------YNEFLQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 172

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++   +  +  
Sbjct: 173 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 232

Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            LE A+         +    L+    + Y+++I +RR   +G++ +FK   NP PW+  +
Sbjct: 233 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 292

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           + +    NFFE RV +Y +GA
Sbjct: 293 LGVT-HTNFFENRVVDYAKGA 312


>gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
 gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
          Length = 346

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 155/338 (45%), Gaps = 16/338 (4%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              +  N   + +    S+V     + Y WA+ KY     N W P E+ M  D+  +   
Sbjct: 11  MDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF--- 67

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT+ E+    + +G  A  +S+  +     +  ++++      ++  A +E +H+H++
Sbjct: 68  PNLTEREQDAFLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSY 126

Query: 132 QYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            Y+++SL     + E+F  +R  P +  + ++            +    ++ + E L   
Sbjct: 127 SYVLSSLVPKSKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKS 178

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V+ V+ EG++FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E 
Sbjct: 179 IVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEY 238

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P   T E  Q  R    +A  LEI +A+  +     G++      Y++F AN R HQ+G 
Sbjct: 239 PEYNTPELAQFVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGF 298

Query: 310 EPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQ 345
           +  F  Y  NP  W+    ++   + +FFE +  +Y +
Sbjct: 299 DRPFDGYRTNPLRWIKAYEEVDLGKSDFFEQKSRQYTK 336


>gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
 gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
          Length = 346

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 155/338 (45%), Gaps = 16/338 (4%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              +  N   + +    S+V     + Y WA+ KY     N W P E+ M  D+  +   
Sbjct: 11  MDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF--- 67

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT+ E+    + +G  A  +S+  +     +  ++++      ++  A +E +H+H++
Sbjct: 68  PLLTEREQDAFLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSY 126

Query: 132 QYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            Y+++SL     + E+F  +R  P +  + ++            +    ++ + E L   
Sbjct: 127 SYVLSSLVTKSKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKS 178

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V+ V+ EG++FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E 
Sbjct: 179 IVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLSEY 238

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P   T E  +  +    +A  LEI +A+  +     G++      Y++F AN R HQ+G 
Sbjct: 239 PEYNTPELAEFVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGF 298

Query: 310 EPLF-KYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQ 345
           E  F  Y  NP  W+    ++   + +FFE +  +Y +
Sbjct: 299 ERPFAGYRTNPLRWIKAYEEVDLGKSDFFEQKSRQYTK 336


>gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 328

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 21/321 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF 
Sbjct: 10  RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E        
Sbjct: 68  QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPETV------ 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQIL 209
                    N  LQY        F  G  +  QE +   +  F    EGM  ++ F  +L
Sbjct: 122 --------YNEFLQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++   +  +  
Sbjct: 174 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 233

Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            LE A+         +    L+    + Y+++I +RR   +G++ +FK   NP PW+  +
Sbjct: 234 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 293

Query: 327 IDLKKEKNFFETRVTEYQQGA 347
           + +    NFFE RV +Y +GA
Sbjct: 294 LGVT-HTNFFENRVVDYAKGA 313


>gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 410

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +                   +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDA-------------NPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++     
Sbjct: 326 FIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGNWD 405


>gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
 gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
          Length = 352

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 28/356 (7%)

Query: 8   SPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +PI   +   ++  + +     +++ QL  ++Y WA   Y     N W+P ++ +  D+ 
Sbjct: 12  NPIFNPDGNDDIAHRSIWFGETTNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVT 71

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   LTD ER      L +    +S+   N+   I   ++ PE    +  Q  +E +
Sbjct: 72  DYHN---LTDSERRAFDGILSYLTFLDSVQTCNL-PHIKSSITAPEISLCIAEQISQEGM 127

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++QY+I ++        +++ +R    +  +  +     Q            +   E
Sbjct: 128 HNQSYQYMIETIIPSDRRSAVYDFWRTDKVLRDRCEYIASNYQRYID--------NPTPE 179

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I +
Sbjct: 180 NYFTTLVADYLLEGLYFYNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPE 239

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 H            M+  A   E  + +  +    +G+   S E Y +++AN R 
Sbjct: 240 AMATFDHSVDH-----IYEMVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRL 294

Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
             IGLEPL+K   Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 295 QAIGLEPLYKGDQYKKSPYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350


>gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 410

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 17/320 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S+ 
Sbjct: 101 KPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E  +
Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T K ++ +                   +  L       V  EG+  +  FA +L+  R 
Sbjct: 219 MTDKIDFMMDA-------------NPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE  
Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +       G +  L A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++     
Sbjct: 326 FIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHT 385

Query: 334 NFFETRVTEYQQGA-ELKWD 352
           NFFE RVTEY+       WD
Sbjct: 386 NFFENRVTEYEVAGLTGNWD 405


>gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 318

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 26/323 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              LLP+     W+ Y  A + HW   E+ M  D   W     L D ER  +K  L FFA
Sbjct: 6   RKTLLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNK--KLNDKERFFLKHVLAFFA 63

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++ +V  NI+  +   +   E   +  +Q F E VH+  +  ++     D  E     N
Sbjct: 64  AADVIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               + S+  KA WA ++ +  S                 +  V + + EG++F   FA 
Sbjct: 124 AIEHIDSVKQKAAWAQKWIENQS-------------ATFAERMVAFAIVEGVFFSGSFAA 170

Query: 208 ILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           I  +   +   + G+    + I RDE LH +F     N+   E      K  + K  +M 
Sbjct: 171 IYYIKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPEK----NKLSKTKVLSMF 226

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  +E  +    +P   +G+N+ S  +Y++F+A+R   ++G +  F  T NPF +M+ 
Sbjct: 227 VEAVDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMNN 285

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I L+ + NFFE RV EY++   
Sbjct: 286 -ISLEGKTNFFEKRVGEYKRFGA 307


>gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 343

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 163/327 (49%), Gaps = 15/327 (4%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S+V      ++ WA+  Y +   N W+P EVPM  D+  W +   L D ER   K+ 
Sbjct: 21  GQSSNVLNWDDCRFPWAYPMYRNMLRNFWIPDEVPMTADIKQWST--ELGDHERDTFKKV 78

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A  +S+  +     +  +L++      +   +F+E VH+ ++ Y+++SL    ++ 
Sbjct: 79  IGLLAFLDSVQTD-YSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQD 137

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+F  ++    +  + ++     Q            D   +   +  V+ V+ EG++FY+
Sbjct: 138 EIFEYWKTDEVLRERNDFLAAGYQRFVD--------DPTPQTFMESVVYDVILEGLFFYS 189

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   ++ R  KM+G     ++I RDE +H+     +  ++  ENP L  +E  +  R 
Sbjct: 190 GFAFFYNMARNGKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEFVRQ 249

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
              +A  LEIA++   +   F G+ +   ++Y++F+AN+R +++G+E  F+ +  N   W
Sbjct: 250 TFRKAAELEIAWSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNNLRW 309

Query: 323 MSEV-IDLKKEKNFFETRVTEYQQGAE 348
           +     +   + +FFE+RVT+Y + ++
Sbjct: 310 IKAYEENDAGKTDFFESRVTQYVKVSD 336


>gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803]
 gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803]
          Length = 355

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 153/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI       +V+++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 14  VTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT++ER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 74  TDY---WNLTNEERYAFDGILSYLTFLDSVQTCNI-PHLKSSVTAPEISLCMAEQISQEG 129

Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   E   +++  +R    +  +  +     Q               Q
Sbjct: 130 MHNQSYQYMIETIIPTEKRDKVYEFWRTDRVLKERCEYIAMLYQKYVDH--------PTQ 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 182 ENYFIALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI- 240

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
               E   ++T     +   M  +A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 241 ---PEAMQVFTH-STDQIYEMFDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSR 296

Query: 304 CHQIGLEPLFKYT---ENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+      ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 297 LRAIGLDPLYTDARYGKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353


>gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 355

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           +SPI        ++++ +    + ++ QL  ++Y W+   Y     N W+P  + +  D+
Sbjct: 14  ISPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +EA
Sbjct: 74  TEY---GHLTDEERYAYDGILSYLTFLDSVQTCNI-PHLKGSVTAPEISLCMAEQISQEA 129

Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++      GE+++ +R    +  +  +     Q       T        
Sbjct: 130 MHNQSYQYLIETIIPSDRRGEVYDFWRTDKVLKDRCEFIASLYQQYIDKQTT-------- 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + E ++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 182 ESYFIALLADYLLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIP 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +     PH       ++   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 242 EAMAIFPHSV-----EQIYEMFDSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIR 296

Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGLEPL+   KY ++P+  +    D KK    + NFFE  VT Y   + L  WD
Sbjct: 297 LKAIGLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353


>gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 581

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 133/318 (41%), Gaps = 46/318 (14%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ +   WE Y  A    W   EV +  D++ W+    LT DER  
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN       I AKA+W L++    ++P               +        EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------------FSERLAAVAAVEG 470

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F + FA I  L +   + G+    + I R                         K  +
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELISR-------------------------KPAE 505

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   +++E+ L+E  +  E++P   +G+N     +Y++F+A+    ++G    +  T+N
Sbjct: 506 SRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKN 564

Query: 319 PFPWMSEVIDLKKEKNFF 336
            F +M E I ++ + NFF
Sbjct: 565 LFDFM-ENISIEGKTNFF 581


>gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 358

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/328 (25%), Positives = 150/328 (45%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+ +DL  W S + ++D ER ++ +   FF  S+  V+
Sbjct: 30  RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS-DRVSDQERNLLTQIFRFFTQSDVEVS 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N +          E +  +      E +H   +  ++T+LG+   E F+ +R+  ++  
Sbjct: 89  DNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAMRD 147

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++           +F  GT        + L +F    EGM  +  FA +L+  R NKM
Sbjct: 148 KADYM---------HTFGVGTMADVS---RTLAMFGAFTEGMALFASFAMLLNFPRHNKM 195

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E   L TK  +     +      LE  +  
Sbjct: 196 KGMGQIVTWSVRDESLHCQGIIRLFHEWNRETGAL-TKPVRDDILDVATTMVGLEEKFVD 254

Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
                G +  + A   + Y++++A+ R  Q+ L  L+ +             +P PW+ E
Sbjct: 255 LAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQLRPHPLPWLVE 314

Query: 326 VIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           +++  +  NFFE R TEY + A +  WD
Sbjct: 315 ILNGVEHANFFEQRSTEYSKAATQGAWD 342


>gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
          Length = 331

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 19/339 (5%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K  N+ +KR L  +S  +   P  Y WA+E ++ +   HW+ TEVPM +D+  WK    L
Sbjct: 2   KVKNMTEKRNLLTQS-RDYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRL 58

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D+ER  + +   FF   +  V++  V         PE R  L   A  EAVH   + ++
Sbjct: 59  NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I ++G+    ++N + +  ++ AK  +            F     + ++     +  F  
Sbjct: 119 IETIGM-PDAIYNEFLQYEAMAAKHEF------------FHGLRLNQNENIAAKMAAFSA 165

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EGM  ++ F  +L+  R   M G+ +   + + DE+LH    I +  +   +NP LW 
Sbjct: 166 FTEGMQLFSSFVMLLNFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLWN 225

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            + +    ++  +   LE ++            L     ++Y++FIA+RR   +G++ +F
Sbjct: 226 DDLKSTIYSIAEKMVELEDSFIDLAFGVNQMQKLAKEDVKKYIRFIADRRLSAMGMKAIF 285

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
              +NP PW+  ++ +    NFFE RV +Y +GA    W
Sbjct: 286 NEKKNPLPWVDAMLGVT-HTNFFENRVVDYAKGALSGDW 323


>gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
          Length = 425

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +DL  WK+   LT DE+LM  R        
Sbjct: 116 NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 172

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           ++L      +++      P         AF E+VH+ ++  I ++L   E   E F    
Sbjct: 173 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 232

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA     Y                D    +   V   + E   FY+GF   + 
Sbjct: 233 ENEALQKKAEIVKSYY---------------DGNDPEKRKVASTMLESFLFYSGFYAPMY 277

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+      + +  + ++L+E   
Sbjct: 278 WSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 337

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y  +      +       ++++++ AN+    +G E LF       NP    +   
Sbjct: 338 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSP 394

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 395 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 424


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
            putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 112/184 (60%), Positives = 141/184 (76%)

Query: 169  LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
            +  P+F TGT ++DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+
Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYIL 1182

Query: 229  RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
            RDES+H NFGID+INQ+K+ENPHLWT EF+ + + +  +A  LE  YA +TMP+G +G+N
Sbjct: 1183 RDESMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMN 1242

Query: 289  APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            A   + Y+++IANRR  QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  
Sbjct: 1243 ASMFKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGA 1302

Query: 349  LKWD 352
            L WD
Sbjct: 1303 LSWD 1306


>gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata]
          Length = 335

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 139/333 (41%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        + P+KY   W  Y       W   ++ +  D+  W++   L+  ++ 
Sbjct: 7   DEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQKE 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
                L   + ++++V  NIV      L NPE + +   Q   E ++   +  ++ +L  
Sbjct: 64  FFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALFT 123

Query: 141 --DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             D   LF    +   + AK+ WA ++                D+    +  V     EG
Sbjct: 124 SVDNIPLFKAVCQQEEVKAKSEWAHRWVFD-------------DESLYAERLVASAAREG 170

Query: 199 MWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           ++    FA +  L      M G+A    +I RD   + +F   +         HL TK  
Sbjct: 171 IFMSGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLF-------AHLKTKPN 223

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E A+   +MP   +G++    +QY++ +A++     G E  +  T 
Sbjct: 224 PKIIEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT- 282

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPFP+M E   +  + NFFE +V++YQ+ +   
Sbjct: 283 NPFPFMEEATSI-GKTNFFEKKVSDYQKASATS 314


>gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 420

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 32/378 (8%)

Query: 4   NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +TGL+ +     +  K   + +        +V +    KY    +      +  W P EV
Sbjct: 39  STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++  
Sbjct: 99  DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----F 174
            AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +      
Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLL 215

Query: 175 TTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
             GT + +           ++ L    +     E + FY  FA   +      M G A+ 
Sbjct: 216 GEGTHNVNGRTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKI 275

Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279
            + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E  +A   
Sbjct: 276 IRLIARDEALHLTGTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQEKEWADYL 335

Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FE 337
              G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E
Sbjct: 336 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQE 395

Query: 338 TRVTEY---QQGAELKWD 352
             V+ Y   Q  +E+  D
Sbjct: 396 VEVSSYLVGQIDSEVNTD 413


>gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 420

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 32/378 (8%)

Query: 4   NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           +TGL+ +     +  K   + +        +V +    KY    +      +  W P EV
Sbjct: 39  STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++  
Sbjct: 99  DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----F 174
            AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +      
Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLL 215

Query: 175 TTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
             GT + +           ++ L    +     E + FY  FA   +      M G A+ 
Sbjct: 216 GEGTHNVNGKTVTVNLRTLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKI 275

Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279
            + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E  +A   
Sbjct: 276 IRLIARDEALHLTGTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQEKEWADYL 335

Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FE 337
              G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E
Sbjct: 336 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQE 395

Query: 338 TRVTEY---QQGAELKWD 352
             V+ Y   Q  +E+  D
Sbjct: 396 VEVSSYLVGQIDSEVNTD 413


>gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 5 str. 8401]
 gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri
           2002017]
          Length = 453

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 83  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 141

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 142 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 199

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 200 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 259

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 260 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 319

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 320 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 379

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 380 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 439

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 440 DAEVDTD 446


>gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
          Length = 449

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 79  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 137

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 138 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 195

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 196 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 255

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 256 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 315

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 316 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 375

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 376 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 435

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 436 DSEVDTD 442


>gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 449

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 79  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 137

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 138 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 195

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 196 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 255

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 256 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 315

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 316 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 375

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 376 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 435

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 436 DAEVDTD 442


>gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 345

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 16/321 (4%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S++     +++ WA+ KY     N W P E+ M  D+  +     L   E+    + +G 
Sbjct: 27  SNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDIKQF---PELRKSEQEAFLKIIGL 83

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
            A  +S+  +     +  ++++      ++  A +E +H+H++ Y+++SL   +   E+F
Sbjct: 84  LALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQKQDEVF 142

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             +R  P +  +  + +          +    ++   E L    VF VV EG++FY+GFA
Sbjct: 143 EFWRTEPILAERNEFVVN--------GYKDFAENPSAENLLKSIVFDVVLEGLFFYSGFA 194

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               L R  KMV  +    YI RDE +H++  + +  +I  ENP L T E  +  +    
Sbjct: 195 FFYHLARNQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKFVQETFK 254

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSE 325
            A  LEI +A + +     G+     E Y++F AN RC+Q+G E  F+ Y  NP  W+  
Sbjct: 255 RAAELEIEWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNPLRWIVA 314

Query: 326 VIDLK-KEKNFFETRVTEYQQ 345
              +   + +FFE +  +Y +
Sbjct: 315 YEQVDHGKSDFFEQKSRQYTK 335


>gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
 gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 26/323 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+     W+ Y  A + HW   E+ M  D   W   N L D ER  +K  L FFA
Sbjct: 6   RKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWN--NKLNDKERFFLKHVLAFFA 63

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           +++ +V  NI+  +   +   E   +  +Q   E VH+  +  ++     D  E     N
Sbjct: 64  AADVIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               + S+  KA WA ++ ++ +                 +  V + + EG++F   FA 
Sbjct: 124 AIEHIDSVKRKATWAQKWIESQT-------------ATFAERMVAFAIVEGVFFSGSFAA 170

Query: 208 ILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           I  +   +   + G+    + I RDE LH +F     N+   +      K  + K   M 
Sbjct: 171 IYYIKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKE----DKLSESKVLNMF 226

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  +E  +    +P   +G+NA S  +Y++F+A+R   ++G E  FK T NPF +M+ 
Sbjct: 227 KEAVDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMNN 285

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I L+ + NFFE RV EY++   
Sbjct: 286 -ISLEGKTNFFEKRVGEYKRFGA 307


>gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
 gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
          Length = 347

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 18/355 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M+N              N          S +     L Y   ++ Y     N+W   EV 
Sbjct: 1   MSNALLEKAKTLDPVHPNKATALFGGKSSGILNWNDLAYPHWYKTYKRLLGNYWQSDEVN 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+  +     L++ E+    + +   A+ +S     I+LA   + ++P  +  L   
Sbjct: 61  MSTDVKQF---PLLSEKEQETFLKIISLLATLDSSQTRTILLA-SLYATDPSIQSILAVI 116

Query: 121 AFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           A +EAVH+ ++ YI++S+     + E F + R+ P +  +    ++     +        
Sbjct: 117 AQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDPVLLKRNKKLMEQYNAFAQ------- 169

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
              D E +    V+  + EG++FY+GFA   +L R NKMVG +    YI RDE  H  F 
Sbjct: 170 -QPDVEDIVKTLVYSTLLEGLFFYSGFAFFYNLARQNKMVGTSTMISYINRDELEHGRFI 228

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
            ++I  +  E+P L T  F         E+  LE  ++   +     G++      ++++
Sbjct: 229 SELIRAVLSEHPELNTPAFSDWVYARFRESVDLETEWSEYVLQD-VEGIDLEEMAGFIKY 287

Query: 299 IANRRCHQIGLEPLFK-YTENPFPWMSEVIDL--KKEKNFFETRVTEYQQGAELK 350
            AN+    IGL  L+  + ENP  W+    D     + +FFE +   Y + ++L 
Sbjct: 288 RANKMLRMIGLSELYPEHVENPMKWIRAYADNFDATKTDFFEQKSRSYTKVSDLN 342


>gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp.
           8437]
          Length = 342

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 157/330 (47%), Gaps = 17/330 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N RS +V      ++ WA+  Y +   N W P E+ M +D+  W     L ++E++  
Sbjct: 18  IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQW---GRLAEEEQVAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
           K+ +G  A  +S+  +     +  +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 75  KKIIGLLAFLDSIQTD-YSSKVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++ E+F  ++    +  +  + ++  Q           +  +        V+ V+ EG+ 
Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQA--------FVEKPEPLTFLRSIVYDVILEGLN 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE LH+   + +  ++  E P L T+E +  
Sbjct: 186 FYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRNF 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LEI +    +   F G+       Y++F+AN+R H++G E  F  Y +NP
Sbjct: 246 VTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
             W+    D+   +++FFE +  +Y + + 
Sbjct: 306 MRWVIAYQDVNRGKQDFFEGKSRQYSKVSS 335


>gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
 gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
          Length = 405

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 39  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 85

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 86  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 142

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +        
Sbjct: 143 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 202

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 203 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 262

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E  +A     
Sbjct: 263 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 322

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  
Sbjct: 323 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 382

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 383 VSSYLVGQIDSEVDAD 398


>gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
 gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
          Length = 345

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 155/335 (46%), Gaps = 16/335 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N     +    S+V     +++ WA+  Y +   N W P E+ M  D   + +   LT+ 
Sbjct: 16  NASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTET 72

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+   K+ +G  A  +S+  +   +    +L++      +   +F+E VH+ ++ Y+++S
Sbjct: 73  EQEAFKKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSS 131

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L     + E+F  ++    +  +  + +   +            +   +   +  V+ V+
Sbjct: 132 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVI 183

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+ FY+GFA   +L R  KMV  +    YI RDE LH+    ++  ++ +E P L T+
Sbjct: 184 LEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTE 243

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +   +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G+E  +  
Sbjct: 244 ETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPE 303

Query: 316 TE-NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
            + NP  W+    D+   + +FFE +  +Y + + 
Sbjct: 304 IKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSA 338


>gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group]
          Length = 244

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161
              +   E R +   Q   E +HS  +  ++ +   D  E    F     VP++  KA+W
Sbjct: 1   MSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADW 60

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A+++                  E   +  V +   EG++F   F  I  L +   M G+ 
Sbjct: 61  AMRWIDG--------------GERFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 106

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + + ++        K  + + R ++ +A  +E  +  + +P
Sbjct: 107 FSNELISRDEGLHCDFACLLYDLLRG-------KLDEARVREIVADAVDIEREFVCDALP 159

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              VG+N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV 
Sbjct: 160 VALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVG 217

Query: 342 EYQQGAELK 350
           +YQ+ + + 
Sbjct: 218 DYQKASVMS 226


>gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella
           succinogenes]
          Length = 283

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 13/293 (4%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D   +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQ
Sbjct: 1   MTPDKRDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 58

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+HS ++  ++ S+  +  E++ M+R    + +K +      + L+        K+
Sbjct: 59  AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KN 110

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                +        + EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    +
Sbjct: 111 PTDSAMLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQN 170

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN +K E P L+TK  +++   M  +A  +E A+         +GL +    +Y+Q++A
Sbjct: 171 MINALKKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLA 230

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           + R  ++G+  L+   ++P  W+ +     + + NFFE  VT Y +G+ + +D
Sbjct: 231 DDRLKRVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 281


>gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
          Length = 353

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 154/326 (47%), Gaps = 16/326 (4%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S++     +++ WA+ KY     N W P E+ M  D+  +     L+++E+    + +G 
Sbjct: 34  SNILNWDDVRFQWAFPKYKRMLANFWTPFEINMSQDIKQFPD---LSEEEKEAFLKIIGL 90

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELF 146
            A  +S+  +     +  +L++      ++  A +E +H+H++ Y+++S+     + E+F
Sbjct: 91  LALLDSIQTD-YAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSIVDKNKQDEVF 149

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             +R  P++  +  +            +    +    + L    +F VV EG++FY+GFA
Sbjct: 150 EFWRTEPALIKRNEFVAS--------GYRNFAESPTVDSLLKSIIFDVVLEGLFFYSGFA 201

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               L R  KMV  +    YI RDE LH++  + +  +I  E P   TKE  + + +   
Sbjct: 202 FFYHLARNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEFAESTFR 261

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSE 325
           EA  LEI +A   +     G+     E+Y++F AN R +Q+G    F+ +  NP  W+  
Sbjct: 262 EAAYLEIEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNPLRWIKA 321

Query: 326 VIDLK-KEKNFFETRVTEYQQGAELK 350
             ++   + +FFE +  +Y +   + 
Sbjct: 322 YEEVDLGKSDFFEQKPRQYVKVNTVD 347


>gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis HI4320]
          Length = 376

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L + +     F  GT               ++ L    +     E + F
Sbjct: 150 RARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  EA   E  +A     +G  +GLN     QY+++I N R   +GL+  FK  
Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKAR 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +++  D
Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369


>gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
 gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
          Length = 376

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L + +     F  GT               ++ L    +     E + F
Sbjct: 150 RARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  EA   E  +A     +G  +GLN     QY+++I N R   +GL+  FK  
Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKAR 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +++  D
Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369


>gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 277

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 31/289 (10%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D   + +   LT +E+  IK  L FFA+S+ +V  N+V      +   E + +   Q
Sbjct: 1   MTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQ 57

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +L  D+ E    FN    +PSI  KA WA ++            
Sbjct: 58  IAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI----------- 106

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
              A         V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 107 ---ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDF 163

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   I  +               ++ EA  +E  +  E++P   +G+N     QY++
Sbjct: 164 ACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIE 214

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           F+A+R    +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 215 FVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261


>gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 396

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 30  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 76

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 77  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 133

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +        
Sbjct: 134 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 193

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 194 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 253

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E  +A     
Sbjct: 254 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 313

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  
Sbjct: 314 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 373

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 374 VSSYLVGQIDSEVDAD 389


>gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
 gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
          Length = 376

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L + +     +  G                ++ L    +     E + F
Sbjct: 150 RARDISSYYDELINLTNLYHMYGEGEHQVKGKTVHVTLRKLKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  EA   E  +A     +G  +GLN     QY+++I N R   +GL+  FK  
Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFKAR 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +++  D
Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369


>gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 376

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 30/368 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173
           + +II ++  D   +F+       I  +A    QY  TL                    +
Sbjct: 123 YTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELTSYWHLLGEGTHSVNGKT 182

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
            T   +D  ++    L       E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 ITVNLRDLKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEAL 241

Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN
Sbjct: 242 HLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---Q 344
                QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q
Sbjct: 302 KDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ 361

Query: 345 QGAELKWD 352
             AE+  D
Sbjct: 362 IDAEVDTD 369


>gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
 gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
          Length = 341

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 144/334 (43%), Gaps = 21/334 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP++    W    +A +  W   E  +  D   W+  + L   ER  +K  L FFA
Sbjct: 8   RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWR--HKLCVQERFFLKHILAFFA 65

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147
           S++++V  N++  +   +   E R +  +Q   E VHS  +  ++     +  E     N
Sbjct: 66  SADTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLN 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTT----------GTKDADQEFLQDLFVFYVVFE 197
            +  +  I  KA WAL++T++     +                +    L    + + + E
Sbjct: 126 AFDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIVE 185

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  +     M G+    + I RDE LH +F     N        +  K  
Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIP----INEKLS 241

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q+  +M  EA  +E  +    +P   +G+NA    +Y++F+A+R   ++     F  T 
Sbjct: 242 PQQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELRQPKHFN-TP 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NPF +M+  I L+ + NFFE RV EY++    + 
Sbjct: 301 NPFNFMTN-ISLEGKTNFFERRVGEYKRFGAGQD 333


>gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa
           Indica Group]
          Length = 233

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D   W     L+ DER  +   L FFA+S+
Sbjct: 1   MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERHFVSHVLAFFAASD 58

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ E    F    
Sbjct: 59  GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA+WA+++                  E   +  V +   EG++F   F  I  
Sbjct: 119 TVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVEGIFFSGSFCAIFW 164

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++        K  + + + ++ +A  
Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLDESRVQEIVADAVD 217

Query: 271 LEIAYAHETMPKGFV 285
           +E  +  + +P   V
Sbjct: 218 IEREFVCDALPVALV 232


>gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
 gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
          Length = 345

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 158/335 (47%), Gaps = 16/335 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N     +    S++     +++ WA+ KY     N W P E+ M  D+  +     LT+ 
Sbjct: 16  NASTAIINGKSSNILNWDDVRFSWAYPKYKRMLGNFWTPFEINMSKDIKQF---PNLTEQ 72

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+    + +G  A  +S+  +     +  +L++      ++  A +E VH+H++ Y+++S
Sbjct: 73  EQDTFLKVIGLLALLDSIQTD-YAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSS 131

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           +     + E+F+ +R  P++  + ++     Q  +        ++ + E L    V+ V+
Sbjct: 132 IVSKNKQDEVFDYWRTEPTLRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVI 183

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY+GFA   +L R  KMV  +    YI RDE LH+     +  ++  ENP   T 
Sbjct: 184 LEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTA 243

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
           E +         A  LEI +  + +     GL     E Y++F+AN+R  Q+G +  F+ 
Sbjct: 244 ELKVFGTQAFKRAAELEIEWGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEG 303

Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
           Y  NP  W+    ++   + +FFE +  +Y + ++
Sbjct: 304 YRTNPLRWIVAYQEVDLGKTDFFEQKSRQYTKTSD 338


>gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           pseudofirmus OF4]
 gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           pseudofirmus OF4]
          Length = 344

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 80/335 (23%), Positives = 161/335 (48%), Gaps = 16/335 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N     +    S+V     +++ WA+  Y +   N W P E+ M  D   +++   LT+ 
Sbjct: 15  NASTGIINGESSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDTKQFQN---LTET 71

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+   K+ +G  A  +S+  +   L +  +L++      +   +F+E VH+ ++ Y+++S
Sbjct: 72  EQEAFKKIIGLLAFLDSVQTD-YSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSS 130

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L     + E+F+ ++  P +  +  + +   +  ++        +   + L    V+ V+
Sbjct: 131 LVPKATQDEIFDYWKNDPVLKERNEFIVDGYEEFAN--------NPTPDTLARSIVYDVI 182

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+ FY+GFA   +L R  KMV  +    YI RDE LH+    +V  ++  E+P L  +
Sbjct: 183 LEGVNFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVYLFTNVFKELLEEHPELNNR 242

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
           E +   +  L  A  LE+ + +  + +   G+ +     Y++FIAN+R  Q+G + +F  
Sbjct: 243 EMESFVKQSLTTAVELELKWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQLGYDHIFPE 302

Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
           +  N F W+    D+   + +FFE +  +Y + + 
Sbjct: 303 HRTNVFKWIKAYEDVNAAKSDFFEQKSRQYAKVSS 337


>gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
          Length = 420

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 50  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 407 DAEVDTD 413


>gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
 gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
          Length = 321

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 27/328 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
             ++Y WA   Y     N W+P  + +  D+  +     LTDDER      L +    +S
Sbjct: 9   NDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDS 65

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152
           +   NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   E   +++  +R  
Sbjct: 66  VQTCNI-PHLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTD 124

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  +  +  +  Q            DA  E      +   + EG++FY GF    +L 
Sbjct: 125 KLLRDRCEFIAKLYQKYID--------DATTENYFIALMADFLLEGLYFYNGFIYFYNLA 176

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
               M G A+ ++ I RDE  H+     +I + +   PH       ++   M   A   E
Sbjct: 177 SRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSV-----EQIYEMFDMAVNYE 231

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDL 329
             + +  +    +G+   S E+Y +++AN R   IGLEPL+    Y+++P+  +    D 
Sbjct: 232 CRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSDT 291

Query: 330 KK----EKNFFETRVTEYQQGAELK-WD 352
           KK    + NFFE  VT Y   + L  WD
Sbjct: 292 KKAAHTKANFFEATVTSYVMSSGLTGWD 319


>gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide
           reductase 1) (B2 protein) (R2 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 376

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +     F  GT               ++ L    +     E + F
Sbjct: 150 RAKDISAYYDDLIEMTNHYQLFGEGTHQIAGKTITASLRGLKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    KE 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A     +G  +GLN     QY+++I N R   +GL+  F+  
Sbjct: 270 EQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINAWL 340


>gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 376

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  +L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTGYYHLLGEGTHQVNGKS 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVDLHSLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL   F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEISDD 369


>gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus parainfluenzae T3T1]
          Length = 376

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQTKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F    NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340


>gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae]
          Length = 345

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 27/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  + +    D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++ 
Sbjct: 14  ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              LTDD++  I   L    SS++LV   ++      L NPE + +   Q   E +HS  
Sbjct: 73  --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEV 130

Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           +  ++ +   D   +  F     +P +  KA +  ++                D     +
Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAE 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++    +A +  L     M G+A   + I RD   + +F   +       
Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G
Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E  +    NPF +M +V    K   FFE +V++YQ+ +++ 
Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330


>gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium QM B1551]
 gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium DSM 319]
 gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium QM B1551]
 gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium DSM 319]
          Length = 347

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 159/329 (48%), Gaps = 18/329 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S++     +++ WA+ KY     N W P E+ M  D+  +     LT DE+    + 
Sbjct: 24  GKSSNILNWDDVRFSWAFPKYKRMLANFWTPFEINMGQDIKQF---PQLTADEQESFLKI 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143
           +G  A  +S+ ++     +  ++++      ++  A +E VH+H++ Y+++SL     + 
Sbjct: 81  IGLLALLDSIQSD-YASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKGKQD 139

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+F  +R    + A+ ++            +   +++A  E      V+ V+ EG++FY+
Sbjct: 140 EVFEYWRTDEKLRARNDFITN--------GYKAFSEEATVENFLKSMVYDVILEGLFFYS 191

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R  KMV  +    YI RDE LH+     +  ++  ENP   T+E +     
Sbjct: 192 GFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETFVVE 251

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYT--ENPF 320
              EA  LEI +A   + + F G+     +QY++++AN+RC+Q+G     F     ENP 
Sbjct: 252 TFQEAARLEIEWAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPIENPL 311

Query: 321 PWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
            W+    ++   + +FFE +  +Y + ++
Sbjct: 312 RWIIAYQEVDLGKTDFFEQKSRQYTKASD 340


>gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus
           iheyensis HTE831]
 gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 347

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 18/348 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
                  +  N   K      S +     + Y   ++ Y     N+W   EV M  D+  
Sbjct: 8   KAKTLEPRNPNKSTKLFGGESSGILNWNDIAYPHWYKMYKRLVGNYWQADEVNMSSDVKQ 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           + +   L+ +E+    + +G  ++ ++       L I  + ++P  +  +   A +EAVH
Sbjct: 68  FST---LSKEEQDAYLKIIGLLSTLDAPQTRT-ALLISLYATDPSVQSIMAVIAQQEAVH 123

Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           + ++ Y+++S+    ++ E F + R    +  +     +               +   E 
Sbjct: 124 NESYSYVLSSVVSWNEQNEAFQLGRTDELLLKRNEQLTEQYNAFVD--------NPSMEN 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +    V+  + EGM+FY+GFA    L R NKMVG +    YI RDE  H  F  ++    
Sbjct: 176 MLKTLVYTSLLEGMFFYSGFAFFYHLARQNKMVGTSTMISYINRDELEHGRFITELFRAT 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             ENP     EF         ++  LEI ++H  + K   G++    + Y+++ AN+   
Sbjct: 236 LEENPSHNNAEFIDWIYDRFQQSVELEIEWSHYVLNK-LEGIDMDDMDGYIKYRANKMLR 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDL--KKEKNFFETRVTEYQQGAELK 350
            +GLE L+  + ENP  W+   +D     + +FFE +  +Y + ++L 
Sbjct: 295 MMGLEELYPQHVENPMKWVRAYVDNFDGTKTDFFEQKSRQYTKTSDLN 342


>gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
          Length = 420

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 50  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 407 DAEVDTD 413


>gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 324

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    WE       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDDKDAEVWE---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEATRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 376

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQVKNNQLQEPMFFGQSVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS +
Sbjct: 64  -NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKD----- 180
           + +II ++  D   +F+   E   I  +A     Y   L            G  +     
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMTNYYHQLGEGVHNVAGKI 182

Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                 A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    KE +QK   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEKEWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340


>gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 343

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 152/334 (45%), Gaps = 14/334 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  DK +  + S +     ++    ++ Y     NHW+P+E+PM  D   ++    LT  
Sbjct: 14  NKSDKLIEGSCSSILNWDDIRKPEMYKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTAQ 70

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+   K+ +G  A  +S+   N V  +  + ++            +E +H+ ++ Y+++S
Sbjct: 71  EQETYKKIIGLLAVLDSMQ-TNFVTDVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLSS 129

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +       + + +EV     K    L+      +  +     +       +  V  ++ E
Sbjct: 130 ITN-----YEVQKEVFEYWKKDEILLER-NLFIAELYQRFRDEPTPATFFEAVVADMILE 183

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FY+GFA    L R  KM+G ++   YI RDE+ H  F  +V   +  + P L T E 
Sbjct: 184 GIFFYSGFAFFYHLARQQKMLGTSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNTSER 243

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q     + +A  LE  +AH  +     G++     +Y++FIAN+R   +GL+P ++  +
Sbjct: 244 IQYVYDTIDQAVKLEEKWAHYVL-NQIDGIDLDDFSRYIRFIANKRLKTMGLQPAYEGVD 302

Query: 318 NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
           N  PW+    D    + + +FFE +   Y + ++
Sbjct: 303 NCMPWIRPFSDEALNQTKTDFFEAKSRTYAKVSD 336


>gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
          Length = 375

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 32  KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 89  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   +           ++ L    +     E + F
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F   
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +E+  D
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 368


>gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 376

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  +L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL   F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEISDD 369


>gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 376

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  +L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL   F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEISDD 369


>gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163]
          Length = 376

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  +L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL   F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEISDD 369


>gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
 gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
          Length = 375

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F    NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
 gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
          Length = 326

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT+ E+ M  R     
Sbjct: 17  NWNRLQDEKDLEVWD---RLVGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y +                +      V   + E   FY+GF  
Sbjct: 131 WSEENPNLQRKAEIVLDYYR---------------GDDPLKRKVASTMLESFLFYSGFYA 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 176 PMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVSEAERAELKDYTFNLLFE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 236 LYDNEVEYTQDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 325


>gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
 gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
          Length = 347

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 83/352 (23%), Positives = 154/352 (43%), Gaps = 24/352 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N +++ +    + +V  L   +YGWA   Y +   + W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DYAN---LIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+  +  + E+++ +++   +  +  +   Y Q L++        +   E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN--------NPTGE 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 177 NYYMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +  +      + +   + H     EI + +       +G++  S E Y +++AN R 
Sbjct: 237 ATTKFSY-----SEDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291

Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352
             IG+  ++   ENP     W       K +  FFET VT Y Q   +K WD
Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343


>gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
 gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
 gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
          Length = 348

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 20/342 (5%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +  N     +    S +     + Y   ++ Y +   N W   E+ MQDD+  W   + L
Sbjct: 16  EHPNKSTGVLNGQSSGLLNWNDIAYPQMYDLYQALLANFWKAQEINMQDDIKQW---DSL 72

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E+ +  R     AS +SL    +  A   ++++   +      + +EAVH+ ++ YI
Sbjct: 73  SSVEKDVFLRINTQLASLDSLQTPTMSQA-MDYVTDSSFKAIFAVISQQEAVHTESYSYI 131

Query: 135 ITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           ++SL    ++ E FN  +  P +  +    L         ++    ++   + L  L V 
Sbjct: 132 LSSLVSVSEQNERFNQAKSDPVVQKRNELIL--------DAYEEFRQNPTPQNLFKLSVN 183

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            +  EG++FY GFA    L R  KM+  +    YI RDE  H  F    I  +  ENP L
Sbjct: 184 SINLEGIYFYAGFAFFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPEL 243

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
            T E  Q   T + +A  LE  +A   +     GL+     +Y++++AN+R  Q+GL+ L
Sbjct: 244 HTDENIQYIYTTIDKAVQLEKEWAQYIL-ADIEGLDLVEFGEYVEYLANKRLRQLGLDNL 302

Query: 313 FKYTENPFPWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++   NP PW+     ++++   + +FFE +   Y + ++  
Sbjct: 303 YEERSNPMPWIQVFGDDMMN-DTKSDFFEQKSRTYTKVSQTN 343


>gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           APEC O1]
 gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 420

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 50  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 407 DAEVDTD 413


>gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. MCS]
 gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. KMS]
 gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. JLS]
          Length = 320

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPATQAELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDSVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
 gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 326

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 129/337 (38%), Gaps = 33/337 (9%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           R +      ++     E +    NN W+P ++P+ +D+  W +   LT +E+L+  R   
Sbjct: 10  RVNAINWNRIQDDKDVEVWNRLVNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFT 66

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGEL 145
                +++      +++      P     L   AF E+VH+ ++  I ++L    +  E 
Sbjct: 67  GLTLLDTIQGTVGAVSLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEA 126

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           F    E   +  KA   + Y Q                +      V   + E   FY+GF
Sbjct: 127 FRWSEENVHLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGF 171

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
              +      K+   A+  + I++DE++H  +      +   +      +E Q  +  +L
Sbjct: 172 YLPMYWSSRAKLTNTADLIRLIIKDEAVHGYYIGYKFQRGLEKETAERREELQAYAYELL 231

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPW 322
            E    E+ Y H+      +   A   ++++ + AN+    +GL+P+F       NP   
Sbjct: 232 DELYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGLDPVFAQDATNVNPAIL 288

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-------ELKWD 352
            +   +  +  +FF    + Y  G+       +  WD
Sbjct: 289 SALSPNADENHDFFSGSGSSYIVGSSKAVSTLDGDWD 325


>gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511]
 gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100]
 gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511]
          Length = 343

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 149/335 (44%), Gaps = 18/335 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             N     +    S +     ++Y   +  Y     N+W+P EV M+ D   +   N L+
Sbjct: 12  NPNKSTAIINGEASGIVNWNDIRYPSFYRAYKELTTNYWLPDEVDMKSDAKQY---NHLS 68

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++E+      +G  A+ +S     I   I  ++S+          A +EA+H+ ++ Y++
Sbjct: 69  EEEKYAFDSIIGLLATLDSPQTRFIY-NIAEYVSDASVHAITAIIAQQEAIHNESYSYVL 127

Query: 136 TSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            S+    ++  +F   R  P+I  +    ++      +        +   E +    V  
Sbjct: 128 ASITNLQEQNRVFEEARTHPTIIKRNAPIMKSYDDFMN--------NKTPENMVKALVQS 179

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG+ FY+GFA   +L R NKM G  +   +I RDE  H  F  ++I  I  ENP L 
Sbjct: 180 SILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQ 239

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T E           A  LE A++ E + +G  G++      Y+++ AN+    +GL+P++
Sbjct: 240 TDELNDYVYASFRHAVELEQAWSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMY 298

Query: 314 -KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
             +TEN   W+    D   + + +FFE R + Y++
Sbjct: 299 QGHTENSMTWIKAYADNFTETKTDFFEMRNSSYKK 333


>gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 320

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVITEDEDWD 319


>gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria
           monocytogenes Clip81459]
 gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-175]
 gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL S4-378]
 gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 1816]
 gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 220]
 gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 349

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 376

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYAVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F    NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340


>gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 378

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 141/340 (41%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 35  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 91

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 92  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILK 151

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +     F  GT   +           ++ L    +     E + F
Sbjct: 152 RAKDISGFYDDLIEMTNYYHMFGEGTHTCNGKQVTVSLRQLKKQLYLCLMSVNALEAIRF 211

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 212 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 271

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A     +G  +GLN     QY+++I N R   +GL+  F+  
Sbjct: 272 EQECYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETR 331

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +++  D
Sbjct: 332 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 371


>gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes J0161]
 gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
 gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
          Length = 349

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   + +   L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 376

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180
           + +II ++  D   +F+       I A+A    +Y   L   +        GT       
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKT 182

Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                 A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVDLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E + +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 129PT]
 gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 2336]
 gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Haemophilus somnus 129PT]
 gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336]
          Length = 376

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNNQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYGLYGEGTYTVDGKA 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CKVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEKEWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 376

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A L E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  
Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 354 VSSYLVGQIDSEVDTD 369


>gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
          Length = 349

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    ++      +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDEFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E M +G  G++      Y+++ AN+    +G+  L+  ++EN   W
Sbjct: 256 AFRHAVELETEWSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 335

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 26  NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 140 WSEENPNLQRKAQIVLDYY---------------KGDDPLKRKVASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 185 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 245 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 334


>gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes EGD-e]
 gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes Finland 1988]
 gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL R2-561]
 gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 10403S]
 gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes LO28]
 gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e]
 gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes L99]
          Length = 349

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 376

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 145/368 (39%), Gaps = 30/368 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173
           + +II ++  D   +F+       I  +A     Y   L                    +
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGVGRHTVNGKT 182

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
            T   ++  ++    L       E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 ITVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241

Query: 234 HLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN
Sbjct: 242 HLTGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---Q 344
                QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q
Sbjct: 302 KDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ 361

Query: 345 QGAELKWD 352
             +E+  D
Sbjct: 362 IDSEVDTD 369


>gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 393

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 380 DSEVDTD 386


>gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 320

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
 gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
          Length = 347

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 14/328 (4%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +    S +     + Y   ++ Y +   N W   E+ MQDD+  W     LT  E+ +  
Sbjct: 24  IQGEASGILNWNDIAYPHMYDLYQTLLANFWKAQEINMQDDIKQWA---ELTPAEQDVFL 80

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R     AS +SL     +  +  ++++P  +      A +EAVH+ ++ Y+++SL  ++ 
Sbjct: 81  RINTQLASLDSLQTPT-MSQVMDYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSLV-NQQ 138

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E    ++E     AK +  +Q    +   ++    +    + L +L V  +  EG++FY 
Sbjct: 139 EQTRRFQE-----AKEDPLIQRRNDVILSAYERFRQHPSPQHLFELAVQSLNLEGVYFYA 193

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA    L R  KM+  +    YI RDE  H  F    +  +  ++P L T+E  Q    
Sbjct: 194 GFAFFYHLARQQKMMKTSTMISYIQRDEMQHAYFMSQFVRILLTDHPELNTRENVQYVYD 253

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
            +  A  LE  +A   +     G++      Y++++ N+R  Q+GL  LF   +NP PW+
Sbjct: 254 AMASAAGLEQEWAA-VILADIDGIDLGEFNGYVEYLVNKRLRQLGLSNLFPERDNPMPWI 312

Query: 324 SEVIDL---KKEKNFFETRVTEYQQGAE 348
               D    + + +FFE +   Y +   
Sbjct: 313 HVFSDTMMNQTKSDFFEQKSRSYTKVTS 340


>gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
 gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
 gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482]
 gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
          Length = 389

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 376 DSEVDTD 382


>gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL J1-023]
          Length = 349

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMTAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
 gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
          Length = 334

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 138/357 (38%), Gaps = 35/357 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           + P++        + K++  AR+ + N++   K    W+       N W+P +VP+ +D+
Sbjct: 1   MHPLETQNPLPQGEAKQVKLARAVNWNRVADEKDAEVWD---RLVGNFWLPEKVPLSNDI 57

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W +   L +DE+ +  R        +++  +   +++      P         AF E+
Sbjct: 58  QSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVSLIPDALTPHEEAVYTNIAFMES 114

Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           VH+ ++  I ++L       E F    E P++  KA   L+  +                
Sbjct: 115 VHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAIVLERYR---------------G 159

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +      V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      
Sbjct: 160 DDPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQ 219

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +    +     +E +  + ++L +    E+ Y  +      +       ++++++ AN+ 
Sbjct: 220 RGLQMSTPERREELKDFTFSLLFDLYENEVEYTQDLYDPVGL---TEDVKKFLRYNANKA 276

Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +G E LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 277 LMNLGYEGLFPKDETAVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 333


>gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
 gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
          Length = 376

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKK 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua
           Clip11262]
 gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262]
          Length = 349

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMAAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
 gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
          Length = 378

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 24/339 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + ++   + +        +V +    KY    +      +  W P EV +  D   + 
Sbjct: 7   IFSQKRNDQLLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 65

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             NGL D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS 
Sbjct: 66  --NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 123

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D   +F+   E   I  +A     Y  TL   +     F  GT   +  
Sbjct: 124 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTCNGK 183

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 184 QITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 243

Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +     E + +   +  +A   E  +A     +G  +GLN
Sbjct: 244 HLTGTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEKEWAEYLFSEGSMIGLN 303

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 KDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 342


>gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 381

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 136/355 (38%), Gaps = 25/355 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P E+ +  D   ++ 
Sbjct: 11  FSQNKNDQLKEPMFFGQSVNVARFDQQKYAIFEKLIEQQLSFFWRPEEIDVSQDRTDYQ- 69

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 70  --KLPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 127

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQE- 184
           + +II ++  D   +F+       I  +A     Y   L   +        GT   + E 
Sbjct: 128 YTHIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMTSYYHLLGEGTHHINSET 187

Query: 185 ----------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                      L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 188 ITVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALH 247

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++   ++P +    KE Q     +  +A   E  +A      G  +GLN 
Sbjct: 248 LTGTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQEKEWATYLFRDGSMIGLNK 307

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
               QY+++I N R   +GL   FK   NP PW++  +     +    E  V+ Y
Sbjct: 308 DILCQYIEYITNIRMQAVGLALPFKIRSNPIPWINAWLSSDNVQVAPQEVEVSSY 362


>gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 376

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +     +  GT + D   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDTQLYTLYGEGTYNVDGQE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CTVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWASYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
 gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
          Length = 326

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT++E+ +  R     
Sbjct: 17  NWNRLEDEKDAEVWD---RLVGNFWLPEKVPVSNDIQSWAT---LTEEEKTLTMRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 71  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   ++Y                  +      V   + E   FY+GF  
Sbjct: 131 WSEENVNLQRKAEIVMKYY---------------KGDSPLKRKVASTLLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLSPEERQELKDYTFELLFE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 236 LYDNEVEYTQDLYDGVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325


>gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
 gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
          Length = 376

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQHKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDSQLYSLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E QQ++  +   A   E  +A+     G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEKEWANYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F    NP PW++  +
Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWINAWL 340


>gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL N1-067]
 gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL S4-171]
          Length = 349

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQK 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVDLETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit
           [Mycobacterium abscessus]
          Length = 324

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 15  NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIQSWNT---LTDHEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   ++Y +              D+   + +     + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E ++ +  +L+E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYENETDYTEDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 376

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
 gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
          Length = 375

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 380

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 24/339 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + +K   + +        +V +    KY    +      +  W P EV +  D   + 
Sbjct: 9   IFSQKKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 67

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS 
Sbjct: 68  --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD---- 180
           ++ +II ++  D   +F+   E   I  +A     Y   L   +     F  GT      
Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMTNYYHMFGEGTHTFGGK 185

Query: 181 -------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 186 QIVVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 245

Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +     E +++   +  +A   E  +A     +G  +GLN
Sbjct: 246 HLTGTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEKEWAEYLFSEGSMIGLN 305

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 306 KEILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344


>gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 393

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 380 DAEVDTD 386


>gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
 gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
          Length = 361

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 13/346 (3%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +          +   L    +V++    +Y    +      +  W P E+ +  D   + 
Sbjct: 4   VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L + E+ +   NL +    +S+   +  + +   +S PE   ++   AF E++H+ 
Sbjct: 63  --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-KDADQEFLQD 188
           ++ +II ++  +  E+ +     P I  +A    +Y   L S S      K  D   L+ 
Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180

Query: 189 LFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                +    V E + FY  FA   +      M G A+  + I RDE+LHLN    ++  
Sbjct: 181 RLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHILTL 240

Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
           +  E+      T+  + +   +   A   E A+       G  +GLN     QY+Q+I +
Sbjct: 241 LVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQYITD 300

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQG 346
            R   IGLEP+F  T+NP PW++  +     +    ET +T Y  G
Sbjct: 301 IRMSAIGLEPVFN-TKNPIPWINNWLSSDNVQVAPQETEITSYVVG 345


>gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 376

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC1]
          Length = 361

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 13/346 (3%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +          +   L    +V++    +Y    +      +  W P E+ +  D   + 
Sbjct: 4   VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L + E+ +   NL +    +S+   +  + +   +S PE   ++   AF E++H+ 
Sbjct: 63  --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-KDADQEFLQD 188
           ++ +II ++  +  E+ +     P I  +A    +Y   L S S      K  D   L+ 
Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180

Query: 189 LFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                +    V E + FY  FA   +      M G A+  + I RDE+LHLN    ++  
Sbjct: 181 RLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHILTL 240

Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
           +  E+      T+  + +   +   A   E A+       G  +GLN     QY+Q+I +
Sbjct: 241 LVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQYITD 300

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQG 346
            R   IGLEP+F  T+NP PW++  +     +    ET +T Y  G
Sbjct: 301 IRMSAIGLEPVFN-TKNPIPWINNWLSSDNVQVAPQETEITSYVVG 345


>gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 376

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 153/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A L E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  
Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  AE+  D
Sbjct: 354 VSSYLVGQIDAEVDTD 369


>gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
 gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
          Length = 333

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 34/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N +  R +    + N+L   K    W        N W+P +VP+ +D+  W +   L ++
Sbjct: 12  NKEKARKVPLAINWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVQSWAT---LREE 65

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++       ++      P     L   AF EAVH+ ++  I ++
Sbjct: 66  EQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFST 125

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       E F    E P + AKA   L+     S P                  +  V 
Sbjct: 126 LCSTREVDEAFRWSEENPQLQAKARLILEEYDAASDP--------------LQRKIASVF 171

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +      +     P     
Sbjct: 172 LESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALARLPEADQA 231

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +  + ++L E   +E  Y  E   +  +       + ++ + AN+    +G E LF  
Sbjct: 232 RLKDFAFSLLFELYEVEALYTEELYDRIGL---TEDVKAFLHYNANKALQNLGYEALFPP 288

Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                NP    +   D +   +FF    + Y  G  +      WD
Sbjct: 289 AACEVNPAILSALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 332


>gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 2457T]
 gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 301]
 gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
          Length = 389

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 376 DAEVDTD 382


>gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863]
 gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 393

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 380 DSEVDTD 386


>gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
 gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
          Length = 359

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 16  KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 73  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 132

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   +           ++ L    +     E + F
Sbjct: 133 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F+  
Sbjct: 253 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 312

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  AE+  D
Sbjct: 313 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 352


>gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           succinogenes 130Z]
 gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes
           130Z]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGTYQVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CAVTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFEARSNPIPWINAWL 340


>gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412]
 gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302]
 gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Escherichia coli O157:H7 str. EDL933]
 gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor
           [Escherichia coli]
 gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           dysenteriae Sd197]
 gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           boydii Sb227]
 gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
 gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
 gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           042]
 gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412]
 gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302]
 gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           ETEC H10407]
 gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 3431]
 gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli STEC_7v]
 gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 3594-74]
 gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 5216-82]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLCELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 363 DAEVDTD 369


>gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 389

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 376 DSEVDTD 382


>gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 147/367 (40%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A    +Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 363 DAEVDTD 369


>gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 405

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 35  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 93

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 94  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 151

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 152 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 211

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 212 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 271

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 272 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 331

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 332 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 391

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 392 DAEVDTD 398


>gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           bovienii SS-2004]
 gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLISIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVANEQILK 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L            GT +           A ++ L    +     E + F
Sbjct: 150 RAKDISGYYDVLIEMTNYYHQLGEGTYNVAGKNITVSLRALKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAREC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F+  
Sbjct: 270 EQQCYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEAR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINAWL 340


>gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea
           ananatis AJ13355]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I A+A    QY   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKS 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E +++   +  +A L E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 340


>gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 148/367 (40%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT + +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHNVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++  I++P +    +E +Q    +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GLE  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLELPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
 gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     ++ GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYSEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +      L      +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae Rd KW20]
 gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 86-028NP]
 gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus
           influenzae F3047]
 gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB)
           [Haemophilus influenzae Rd KW20]
 gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae 86-028NP]
 gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.4-21]
 gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus influenzae 10810]
 gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2866]
 gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2846]
 gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3047]
 gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
 gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 147/367 (40%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLDEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A L E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 324

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDARKQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]
          Length = 360

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+  DL  W S + +TD ER ++ +   FF  S+  V 
Sbjct: 36  RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS-DRVTDSERALLTQIFRFFTQSDIEVG 94

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N +            +  +      E VH   +  ++ +LG+ + E F  +R    + A
Sbjct: 95  DNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEMRA 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++                  D   +  + L +F    EGM  +  FA +L+  R NKM
Sbjct: 154 KADYM------------HEFGVDTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E     T+  +     +      LE  +  
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWNRETG-AVTRSVRDDIVDVAKTMVKLEENFVD 260

Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSE 325
                G +  +       Y++++A+ R  Q+ + P+F + E           +P PW+ E
Sbjct: 261 LAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320

Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
           +++  +  NFFE R TEY + A    WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348


>gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S]
 gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S]
          Length = 329

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 20  NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 134 WSEENPNLQRKAQIVLDYY---------------KGDDPLKRKVASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 239 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 328


>gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103]
 gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103]
          Length = 387

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 17  FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 75

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 76  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 133

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I A+A    QY   L   +        GT   +   
Sbjct: 134 YTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKS 193

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 194 VTVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 253

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E +++   +  +A L E  +A      G  +GLN 
Sbjct: 254 LTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 313

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 314 DILCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 351


>gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
          Length = 389

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 376 DSEVDTD 382


>gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT + D   
Sbjct: 123 YTHIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYTLYGEGTYNVDGQD 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWADYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
 gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
          Length = 375

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F    NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 389

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 376 DSEVDTD 382


>gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
 gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
          Length = 393

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 380 DAEVDTD 386


>gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT + +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVNTD 369


>gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKA 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 363 DAEVDTD 369


>gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQVKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS +
Sbjct: 64  -NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180
           + +II ++  D   +F+       I  +A     Y   L   +     F  GT       
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNNYQLFGEGTHQIAGKT 182

Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 ITVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +     E +Q+   +  +A   E  +A     +G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340


>gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 324

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W]
 gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           CFT073]
 gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           sonnei Ss046]
 gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           UTI89]
 gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           536]
 gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI39]
 gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LF82]
 gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
 gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE15]
 gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W]
 gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli ABU 83972]
 gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
 gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
 gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli EPECa14]
 gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli E128010]
 gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           sonnei 53G]
 gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LT-68]
 gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1180]
 gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1357]
 gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli RN587/1]
 gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
 gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
 gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
 gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
           [Escherichia coli AA86]
 gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           dysenteriae 155-74]
 gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 4343-70]
 gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-671]
 gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2747-71]
 gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71]
 gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri VA-6]
 gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-272]
 gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-304]
 gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-227]
          Length = 376

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 363 DAEVDTD 369


>gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
 gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 389

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 19  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 78  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 376 DAEVDTD 382


>gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter sp. 638]
          Length = 376

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHSVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +   A L E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GLE  FK   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYIEYITNIRMQAVGLELPFKTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVNTD 369


>gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 332

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 137/356 (38%), Gaps = 35/356 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + P++    +   D  +++ A  + N+++  K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MHPLETESSQKAPDKVKLVRA-INWNRVVDEKDSEVWD---RLVGNFWLPEKVPLSNDIQ 56

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W +   L + E+ +  R        +++      +++      P         AF E+V
Sbjct: 57  SWHT---LNEHEQQLTMRVFTGLTLLDTIQGAVGAVSLIPDALTPHEEAVYTNIAFMESV 113

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F    E P++  KA   L+  +                +
Sbjct: 114 HAKSYSSIFSTLSNTPEIDEAFRWSEENPNLQRKAAIVLERYR---------------GD 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 DPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQR 218

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
               +     +E +  + ++L +    E+ Y  +      +       ++++++ AN+  
Sbjct: 219 GLAASTEQRREELKDFTFSLLFDLYENEVEYTQDLYDPVGL---TEDVKKFLRYNANKAL 275

Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           + +G E LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 276 NNLGYEGLFPKDETSVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 331


>gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 376

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y  +L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  
Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 354 VSSYLVGQIDSEVDAD 369


>gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           avium 104]
          Length = 324

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 376

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 376

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNSKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEVDTD 369


>gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T46]
 gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF2; AltName: Full=Ribonucleoside-diphosphate
           reductase nrdF2; AltName: Full=Ribonucleotide reductase
           R2-2 small subunit
 gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium
           tuberculosis]
 gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2
           [Mycobacterium tuberculosis H37Ra]
 gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2
           [Mycobacterium tuberculosis F11]
 gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis W-148]
 gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 324

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   LQY +              D+   + +     + E   FY+GF  
Sbjct: 129 WSEENRNLQRKAEIVLQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDDDWD 323


>gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
 gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
          Length = 325

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 16  NWNRIEDDKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+Y +                +      V   + E   FY+GF  
Sbjct: 130 WSEENPHLQRKAEIILEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L+E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEAVTPERREELKAYTFDLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+AY         +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 235 LYDNEVAYTESLYDGVGL---TEDVKKFLRYNANKALLNLGYEALFPKDETDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
                + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
 gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
          Length = 349

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L+++E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PNLSEEEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P           +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    ++      +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R + Y++
Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339


>gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c]
 gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2;
           AltName: Full=Ribonucleotide reductase R2 subunit 2;
           AltName: Full=Ribonucleotide reductase small subunit 2
 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
 gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae]
 gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae]
 gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c]
 gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB]
 gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO]
          Length = 345

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 27/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  + +    D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++ 
Sbjct: 14  ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              LTDD++  I   L    SS++LV   ++      L NPE + +   Q   E ++S  
Sbjct: 73  --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130

Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           +  ++ +   D   +  F     +P +  KA +  ++                D     +
Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAE 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++    +A +  L     M G+A   + I RD   + +F   +       
Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G
Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E  +    NPF +M +V    K   FFE +V++YQ+ +++ 
Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330


>gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 324

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LTD+E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWH---RLTGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +              D+   + +     + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAAIVMQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEEKKQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDSVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LAPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 324

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY                  +      V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAKRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
 gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
          Length = 376

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182
           + +II ++  D   +F+       I A+A    +Y   L            GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHQVNDKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E +++   +  +A L E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB]
 gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB]
          Length = 376

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182
           + +II ++  D   +F+       I A+A    +Y   L            GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHKVNDKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E +++   +  +A L E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 305

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 12/311 (3%)

Query: 10  IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I        + D+++ +     +      KY WA + +     N W P EV    D   +
Sbjct: 6   IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA HS
Sbjct: 66  RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   L  
Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN ++ E
Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R   I 
Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295

Query: 309 LEPLFKYTENP 319
           L+ L+   ++P
Sbjct: 296 LDKLYN-AKHP 305


>gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 294

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 14/300 (4%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           +P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++  V N  +          E  
Sbjct: 1   LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADIEVNNCYMKHYSNIFKPTEVC 58

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
             L   +  E +H   + Y++ ++G+ E E +  + +   +  K ++  +         F
Sbjct: 59  MMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQR---------F 108

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               K+  +   + L VF    EG+  +  FA +L+  R  KM G+ +   + +RDE+LH
Sbjct: 109 EECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDETLH 168

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCE 293
               I + N    EN  +W    +Q+          LE  + +     G V  L++   +
Sbjct: 169 TESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDEFINLAFACGDVEGLSSKEVK 228

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           +Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  NFFE RVTEY + A E  W+
Sbjct: 229 EYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAATEGTWE 288


>gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali
           symbiont]
          Length = 376

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180
           + +II ++  D  ++F+       I A+A    +Y   L   +        GT       
Sbjct: 123 YTHIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKS 182

Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                 A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++        K    E + +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 7169]
 gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
 gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis O35E]
          Length = 376

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       +R D       K+    +      +  W P E+ +
Sbjct: 10  KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +
Sbjct: 57  SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169
           F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L            
Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173

Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T    ++ L    V   V E + FY  FA   +      M G A+  +
Sbjct: 174 GVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    +IN ++            +  Q+++  +   A   E A+A+    
Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            G  +GLN     QY++FI N R   IGL  +F+   NP PW++  +   
Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343


>gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13]
          Length = 328

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++    LTDD++ 
Sbjct: 7   DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQKT 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +   
Sbjct: 64  YIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFK 123

Query: 141 DEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           D   +  F     +P +  K  +  ++                D     +  V +   EG
Sbjct: 124 DPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKEG 170

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++    +A +  L     M G+A   + I RD   + +F   +         HL TK   
Sbjct: 171 IFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNP 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    N
Sbjct: 224 KIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-N 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M +V    K   FFE +V++YQ+ +++ 
Sbjct: 283 PFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 313


>gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
 gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
          Length = 321

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+      +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVSNFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    D  + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y                  E      V   + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAQIVLDYYN---------------GESPLKRKVASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAEREELKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +       ++++++ AN+  + +G E LF   E   NP    +
Sbjct: 231 LYENEVDYTQDLYDGVGL---TEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 320


>gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 346

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N R+  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  ADARQY---GELSGREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRVFELARTHPTIIKRNAPIMGAYDD--------FMRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMTGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQAFEHAIELETQWSSEVL-DGIDGIDVEEMTRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKK 336


>gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
 gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
          Length = 380

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       +R D       K+    +      +  W P E+ +
Sbjct: 14  KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 60

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +
Sbjct: 61  SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 117

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169
           F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L            
Sbjct: 118 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 177

Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T    ++ L    V   V E + FY  FA   +      M G A+  +
Sbjct: 178 GVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 237

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    +IN ++            +  Q+++  +   A   E A+A+    
Sbjct: 238 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 297

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            G  +GLN     QY++FI N R   IGL  +F+   NP PW++  +   
Sbjct: 298 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 347


>gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 376

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  +L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL   F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 303 DILCQYVEYITNIRMQGVGLSLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 363 DSEISDD 369


>gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
 gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
          Length = 376

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 37/349 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR DV      KY    +      +  W P EV + 
Sbjct: 11  NNACLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177
            E +HS ++ +II ++  D   +F+   +   I  +A    QY   L   +        G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T   +           ++ L    V   V E + FY  FA   +    N M G A+  + 
Sbjct: 175 THIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++   ++P +    +E +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           G  +GLN     QY+++I N R   + L P +    NP PWM   ++  
Sbjct: 295 GSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWMKNWLESD 343


>gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 46P47B1]
 gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 12P80B1]
 gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 101P30B1]
          Length = 376

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       +R D       K+    +      +  W P E+ +
Sbjct: 10  KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +
Sbjct: 57  SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169
           F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L            
Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173

Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T    ++ L    V   V E + FY  FA   +      M G A+  +
Sbjct: 174 GIYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    +IN ++            +  Q+++  +   A   E A+A+    
Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            G  +GLN     QY++FI N R   IGL  +F+   NP PW++  +   
Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343


>gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
 gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
          Length = 375

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 137/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 32  KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 89  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   +           ++ L    +     E +  
Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRX 208

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F   
Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +E+  D
Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 368


>gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia
           farcinica IFM 10152]
 gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Nocardia farcinica IFM 10152]
          Length = 320

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRVPDEKDAEVW---ARLTGNFWLPEKVPVSNDIPSWNT---LTPHEQQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y Q                +      V   + E   FY+GF  
Sbjct: 125 WSEENRNLQRKAEIVLDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L+E
Sbjct: 170 PMHWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEQVSEAEREELKNYTFELLYE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       + ++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYENEVEYTQDLYDEVGL---TEDVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 376

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
          Length = 376

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G+   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +   N         +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 303 DILVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340


>gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 400

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 146/376 (38%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 34  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 80

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 81  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWS 137

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 138 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGE 197

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 198 GTHQVNGKTVVVNLRELKKQLYLCVMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 257

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     +IN ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 258 MIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 317

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +     +    E  
Sbjct: 318 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWLVSDNVQVAPQEVE 377

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 378 VSSYLVGQIDSEISAD 393


>gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 376

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G+   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 303 DILVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340


>gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
          Length = 376

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       +R D       K+    +      +  W P E+ +
Sbjct: 10  KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +
Sbjct: 57  SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169
           F E +HS ++ +II ++  D  ++F    +   I  +A+   +Y   L            
Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173

Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T    ++ L    V   V E + FY  FA   +      M G A+  +
Sbjct: 174 GIYQIDEQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    +IN ++            +  Q+++  +   A   E A+A+    
Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            G  +GLN     QY++FI N R   IGL  +F+   NP PW++  +   
Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343


>gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
 gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
          Length = 340

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 376

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNR 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 320

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 128/325 (39%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 11  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 65  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   LQY +              D+   + +     + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVLQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVKRAELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAV 311


>gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
 gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
          Length = 349

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 18/322 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S +     + Y   +  Y     N+W+P EV M+ D   +     L+++ER      +G 
Sbjct: 31  SGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKGDAKQY---PELSEEERYAYDAIIGL 87

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELF 146
            A+ +S     I   +  ++++P         A +E +H+ ++ Y++ S+    ++  +F
Sbjct: 88  LATLDSPQTRFIY-NVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIF 146

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            + R  P+I  +    +               +    E L    +   + EG+ FY+GFA
Sbjct: 147 ELARTHPTIIKRNQPIMDAYDD--------FLEHKTGETLVKSLIQSSILEGINFYSGFA 198

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
              +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E    +     
Sbjct: 199 YFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAYTHDAFR 258

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSE 325
            A  LE  ++ E M +G  G++      Y+++ AN+    +G+  L+  ++EN   W+  
Sbjct: 259 HAVELETIWSEEVM-EGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKA 317

Query: 326 VID--LKKEKNFFETRVTEYQQ 345
             D   + + +FFE R + Y++
Sbjct: 318 YADNFTETKTDFFEMRNSSYKK 339


>gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 377

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIINDPAVVFDDIVENEHILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +     F  G    +           ++ L    +     E + F
Sbjct: 150 RAKDIAHYYDDLIQATNDYHRFGEGKHQLNDETINVSLTELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     +IN ++            +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGLDDFTFLQIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+   +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 270 KQQCFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPKA 329

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 330 TSNPIPWINAWLSSD 344


>gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
 gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
          Length = 375

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
             +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 HTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           tasmaniensis Et1/99]
 gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           tasmaniensis Et1/99]
          Length = 376

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+    V+  R    + D+ +          +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP---VNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L D E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I ++A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTITVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    KE +Q+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFS 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 294 GGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans]
          Length = 346

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 18/325 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N W+P EV M+ D   +     L+  E+      
Sbjct: 25  GTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKGDAKQY---GELSAREKNAYDSI 81

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
           +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    D+ 
Sbjct: 82  IGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLADQN 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I A+    +Q              ++   E L    +   + EG+ FY+
Sbjct: 141 RVFEIARTHPTIVARNQPIMQAYDD--------FMREKTAETLLRSLIQSSILEGINFYS 192

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R N+M G  +   +I RDE  H  F  ++I  I  EN  L T E       
Sbjct: 193 GFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDYVHQ 252

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322
               A  LE  ++ E +  G  G++     QY+++ AN+    +G+E L+   ++N  PW
Sbjct: 253 AFEHAIRLETEWSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNVMPW 311

Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345
           +    D   + + +FFE R   Y++
Sbjct: 312 IKAYADNFTETKTDFFEMRNASYKK 336


>gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
                + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
 gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
          Length = 376

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 26/339 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWK 69
            +  K   + +        +V +    KY   +EK +    +  W P EV +  D   + 
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKY-ETFEKLIEKQLSFSWRPEEVDVSQDRIDYA 64

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS 
Sbjct: 65  ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D   +F+       I  +A     Y   L   S     +  GT   D  
Sbjct: 122 SYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGK 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  ++I RDE+L
Sbjct: 182 ECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEAL 241

Query: 234 HLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN
Sbjct: 242 HLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 302 RDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 325

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT DE+ +  R     
Sbjct: 16  NWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 70  TLLDTLQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                  +      V   + E   FY+GF  
Sbjct: 130 WSVENENLQKKAQIVMNYY---------------TGDDPLKRKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L+E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEERREEIKAYTFDLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               EI Y H+      +   A   ++++ + AN+    +G E +F  T    NP    +
Sbjct: 235 LYENEIQYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEAMFPSTVTDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
 gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
          Length = 372

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 137/337 (40%), Gaps = 20/337 (5%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KYG   +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNNQLLEPMFFGQNVNVARYDQQKYGIFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L  +E+ +   NL +    +S+        +   +S PE   ++   +F E +HS +
Sbjct: 65  --KLPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPIVSIPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEF 185
           + +II ++  D   +F+       I A+A    QY   L   +     F  G+    +  
Sbjct: 123 YTHIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQQLTALWQLFGEGSHAGHEIS 182

Query: 186 LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           L++L        +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 183 LRELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGT 242

Query: 239 IDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N +    ++P +     E +Q+ + +  +A   E  +A      G  +GLN     
Sbjct: 243 QHMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKDWADYLFKDGSMIGLNKQILC 302

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            Y+++I N R   +GL+  FK   NP PW++  ++  
Sbjct: 303 GYVEYITNIRMQAVGLDAPFKGATNPIPWINAWLNSD 339


>gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
 gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
          Length = 324

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L+  K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLVDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKAKIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPQRQAELKDYTFDLLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323


>gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789]
 gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291]
 gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118]
 gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796]
 gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 345

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 138/342 (40%), Gaps = 27/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  + +    D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++ 
Sbjct: 14  ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              LTDD++  I   L    SS++LV   ++      L NPE + +   Q   E ++S  
Sbjct: 73  --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130

Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           +  ++ +   D   +  F     +P +  K  +  ++                D     +
Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAE 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++    +A +  L     M G+A   + I RD   + +F   +       
Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             HL TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G
Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E  +    NPF +M +V    K   FFE +V++YQ+ +++ 
Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330


>gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 324

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+     +E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
          Length = 354

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 18/328 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N W+P EV M+ D   +     L+  E+      
Sbjct: 33  GTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKSDARQY---GELSAREKNAFDSI 89

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
           +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    ++ 
Sbjct: 90  IGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQN 148

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +               ++   E L    +   + EG+ FY+
Sbjct: 149 RVFEIARTHPTILRRNAPIMAAYDD--------FMREKTAETLLRALIQSSILEGINFYS 200

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP L T E       
Sbjct: 201 GFAYFYNLVRQNRMAGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDELADYVHL 260

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322
               A  LE  +  E +  G  G++     +Y+++ AN+    +G+E L+ + T+N  PW
Sbjct: 261 AFRHAIELETQWTGEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIESLYTETTDNVMPW 319

Query: 323 MSEVID--LKKEKNFFETRVTEYQQGAE 348
           +    D   + + +FFE R   Y++   
Sbjct: 320 IRAYADNFTETKTDFFEMRNASYKKTNA 347


>gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           pyrifoliae Ep1/96]
 gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae Ep1/96]
 gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae DSM 12163]
 gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp.
           Ejp617]
          Length = 376

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I ++A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    KE +Q+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
                + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
          Length = 393

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E + +   +  +A   E  +A      G  +GLN 
Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379

Query: 346 GAELKWD 352
            AE+  D
Sbjct: 380 DAEVDTD 386


>gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
 gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
          Length = 325

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 16  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 130 WSEENANLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+     +E +  +  +L E
Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFDLLME 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF       NP    S
Sbjct: 235 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 324


>gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium
           japonicum USDA 110]
 gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 360

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+  DL  W S   +TD ER ++ +   FF  S+  V 
Sbjct: 36  RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWAS-GRVTDSERALLTQIFRFFTQSDIEVG 94

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N              +  +      E VH   +  ++ +LG+ + E F  +R    + A
Sbjct: 95  DNYFKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYAQMRA 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++                  D+  +  + L +F    EGM  +  FA +L+  R NKM
Sbjct: 154 KADYM------------HEFGVDSVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E     T+  +     +      LE  +  
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWHRETG-AVTRPVRDDIVDVAKTMVKLEENFVE 260

Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSE 325
                G +  +       Y++++A+ R  Q+ + P+F + E           +P PW+ E
Sbjct: 261 LAFGLGKIEGMLPEHIHAYVRYVADWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320

Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
           +++  +  NFFE R TEY + A    WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348


>gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter
           turicensis z3032]
          Length = 376

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 138/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNNQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++         +  +E +Q+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEKEWAEYLFQ 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 294 GGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340


>gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           jostii RHA1]
 gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1]
          Length = 321

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    D  + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   + Y Q              D+   + +     + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAEIVMDYYQ-------------GDEPLKRKV--ASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 231 LYDNEVDYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320


>gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
 gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
          Length = 376

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 24/335 (7%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
                + +        +V +    KY    +      +  W P EV +  D   ++    
Sbjct: 9   TPNDQLKEPMFFGQHVNVARFDQQKYEIFEKLIERQLSFFWRPEEVDVSKDRIDYQQ--- 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +
Sbjct: 66  LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD------ 182
           II ++  D  E+F+       I  +A     Y   L +          GT   +      
Sbjct: 126 IIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINATQQLHQLGEGTHVVNGETIVV 185

Query: 183 -----QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                ++ L    V   V E + FY  FA   +      M G A+  + I RDE+LHL  
Sbjct: 186 SQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTS 245

Query: 238 GIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              ++N +    ++P +   + E  Q+++ +  +A   E  +A      G  +GLN    
Sbjct: 246 TQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEKEWAEYLFKDGSMIGLNKDIL 305

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             Y+++I N R   +GL   F+   NP PW++  +
Sbjct: 306 SDYIEYITNTRMAAVGLPKAFEVKSNPLPWINAWL 340


>gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           amazonensis SB2B]
 gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella amazonensis SB2B]
          Length = 391

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    +      +  W P EV +  D   +     L D ER +   NL +    +S+  
Sbjct: 48  RYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GKLPDHERHIFISNLKYQTLLDSIQG 104

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSSVFDDIVVNEEILK 164

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 165 RAGDISAYYDELIKLTQIYHLHGEGTHTVDGHVVDVTVRALKKALYLCMMSVNALEAIRF 224

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++N ++             E 
Sbjct: 225 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDAEMAEIAIEC 284

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +   A   E  +A      G  +GLN     QY+++I N+R   + L   +  +
Sbjct: 285 QQEAYDLFLRAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYPES 344

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM   ++  
Sbjct: 345 TNPLPWMKNWLESD 358


>gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20]
          Length = 324

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 129 WSEENANLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
           Group P6(1)22
          Length = 340

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 324

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +       ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
          Length = 340

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           W3-18-1]
 gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           putrefaciens CN-32]
 gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. W3-18-1]
 gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella putrefaciens CN-32]
 gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200]
          Length = 376

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NDLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILR 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +     F  GT   D           ++ L    +     E + F
Sbjct: 150 RATDIAEYYDHLIKLTQVFNLFGAGTHLIDGEELVVNTRTLKKALYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++N ++   ++P +     + 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDPEMGEIAAQC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY++FI N+R   + L   +  +
Sbjct: 270 QQEAYDLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPES 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 369


>gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 376

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G    D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L    +++N I    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340


>gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae L20]
 gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 376

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G    D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L    +++N I    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340


>gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
 gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
          Length = 376

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 133/333 (39%), Gaps = 27/333 (8%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M   RS +V +    KY    +      +  W P EV +  D   +     + +
Sbjct: 12  DATKEPMFFGRSVNVARYDKQKYPIFEKLIEKQLSFFWRPEEVDLSTDRKDF---MNMPE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A    +S PE   +    AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPELETWFETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179
           ++  +  E+F+     P I  +A+   +      + S                 + T  +
Sbjct: 129 NIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLSSVHSIHGEGLHTVDGKVYDTSMR 188

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  ++    L    V  E + FY  FA   +      M G A+  + I RDE+LHL    
Sbjct: 189 NLKKKLYLTLVSINV-LEAIRFYVSFACSFAFAERAIMEGNAKIIKLIARDEALHLTGTQ 247

Query: 240 DVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++N +             KE +Q    +  EA   E  +A     +G  +GLNA     
Sbjct: 248 HMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQEKDWAQYLFREGSMIGLNAQILSD 307

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           Y+++I N R   + LE +F   +NP PWM+  +
Sbjct: 308 YVEYITNVRMKALNLEEIFPARQNPLPWMNAWL 340


>gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
 gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
          Length = 324

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y +                +      V   + E   FY+GF  
Sbjct: 129 WSEENSNLQRKAEIVLEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTQDEDWD 323


>gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
 gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
          Length = 339

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella
           violacea DSS12]
 gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           violacea DSS12]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 142/349 (40%), Gaps = 37/349 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR DV      KY    +      +  W P EV + 
Sbjct: 11  NNARLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177
            E +HS ++ +II ++  D   +F+   E   I  +A    QY   L   +        G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T   +           ++ L    V   V E + FY  FA   +    N M G A+  + 
Sbjct: 175 THIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++   ++P +    KE +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           G  +GLN     QY+++I N R   + L   +    NP PWM   ++  
Sbjct: 295 GSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWMKNWLESD 343


>gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           woodyi ATCC 51908]
 gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 150/363 (41%), Gaps = 38/363 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N+  L P+  G+  VNV       AR DV      KY    +      +  W P EV + 
Sbjct: 11  NDARLEPMFLGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177
            E +HS ++ +II ++  D   +F+   E   I  +A+   +Y  TL   +        G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAEYYDTLIKLTQAFHLLGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T   D           ++ L    +   V E + FY  FA   +      M G A+  + 
Sbjct: 175 THMIDGRELIVTKREIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    +I  ++   ++P +    KE +Q++  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKECEQQAYDIFVKAAEQEKEWARYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340
           G  +GLN     QY+++I N R   + L+  +    NP PWM   ++    +    E  V
Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQITNPLPWMKTWLESDSVQVAPQEVEV 354

Query: 341 TEY 343
           + Y
Sbjct: 355 SSY 357


>gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  +   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           ulcerans Agy99]
 gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium ulcerans Agy99]
          Length = 324

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y +                +      V   + E   FY+GF  
Sbjct: 129 WSEENSNLQRKAEIVLEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATQDEDWD 323


>gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           ducreyi 35000HP]
 gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus
           ducreyi 35000HP]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 127/338 (37%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  GT   D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDSQLYTLYGEGTYQVDGKA 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 CAVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N I              E QQ++  +   A   E  +A      G  +GLN 
Sbjct: 243 LAGTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +Y+++I N R   +GL   F    NP PW++  +
Sbjct: 303 EILVKYVEYITNIRMQSVGLPLPFATQSNPIPWINAWL 340


>gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
 gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
          Length = 399

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 142/376 (37%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 33  KNNQLLEPMFLGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 79

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 80  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 136

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 137 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 196

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 197 GTHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 256

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++             E QQ+   +   A   E  +A     
Sbjct: 257 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFR 316

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL   FK   NP PW++  +     +    E  
Sbjct: 317 DGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINSWLVSDNVQVAPQEVE 376

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 377 VSSYLVGQIDSEISAD 392


>gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
 gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
          Length = 381

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 37  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 94  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153

Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y   L                    +     +D  ++    L       E + 
Sbjct: 154 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 212

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     +IN ++            +E
Sbjct: 213 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 272

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q+S  +  +A   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 273 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 332

Query: 316 T-ENPFPWMSEVIDLK 330
              NP PW++  +   
Sbjct: 333 AVNNPIPWINAWLSSD 348


>gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G    D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L    +++N I    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +Y+++I N R   +GL   F    NP PW++  +
Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFATASNPIPWINAWL 340


>gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
          Length = 377

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149

Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y   L                    +     +D  ++    L       E + 
Sbjct: 150 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     +IN ++            +E
Sbjct: 209 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 268

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q+S  +  +A   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 269 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 328

Query: 316 T-ENPFPWMSEVIDLK 330
              NP PW++  +   
Sbjct: 329 AVNNPIPWINAWLSSD 344


>gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 336

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 133/362 (36%), Gaps = 37/362 (10%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M     ++P++ G    N D      A  D N +   K    W+       N W+P +VP
Sbjct: 1   MKKTNAITPVRWGTNGNNHDR---PIAAIDWNTIPDDKDQEVWD---RLTGNFWLPEKVP 54

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W + N L   E+    R        +++      +++      P         
Sbjct: 55  LSNDIKSWGTLNEL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNI 111

Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF E+VH+ ++  I  +L       + F    E  ++  KA   L Y             
Sbjct: 112 AFMESVHARSYSSIFMTLSSTPEINDAFRWSEENENLQDKARIVLDYY------------ 159

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            + D  F + +     + E   FY+GF   +      K+   A+  + I+RDE++H  + 
Sbjct: 160 -EGDNPFKRKV--ASTLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVHGYYI 216

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                + +           ++ +  +L+E    E  Y  +   +  +G      ++++++
Sbjct: 217 GYKYQRGQEALTQSERDGLKEYTFDLLYELYDNETQYTEDLYDE--LGWT-EDVKRFLRY 273

Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELK 350
            AN+  + +G E LF   E   +P    S      +  +FF    + Y  G      +  
Sbjct: 274 NANKALNNLGYEALFPADETRVSPAIISSLNPGADENHDFFSGSGSSYVIGKAESTTDED 333

Query: 351 WD 352
           WD
Sbjct: 334 WD 335


>gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
 gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
          Length = 381

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 37  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 94  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153

Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y   L                    +     +D  ++    L       E + 
Sbjct: 154 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 212

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     +IN ++            +E
Sbjct: 213 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 272

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q+S  +  +A   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 273 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 332

Query: 316 T-ENPFPWMSEVIDLK 330
              NP PW++  +   
Sbjct: 333 AVNNPIPWINAWLSSD 348


>gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894]
          Length = 376

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E +Q+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGEDDPEMAAIAEECKQECYDLFVLAAQQEKEWAEYLFQ 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 294 GGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340


>gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 377

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 134/342 (39%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              +K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTK------ 179
           + +II ++  D G +F+   E   I  +A     Y   L   +     +  GT       
Sbjct: 123 YTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGTHTINGEE 182

Query: 180 -----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VSIKLHDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++            +E +Q+   +  EA   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL   +   T NP PW++  +   
Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSD 344


>gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 377

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149

Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y   L                    +     +D  ++    L       E + 
Sbjct: 150 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNISMRDLKKKLYLCLMSVNA-LEAIR 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     +IN ++            +E
Sbjct: 209 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 268

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q+S  +  +A   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 269 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 328

Query: 316 T-ENPFPWMSEVIDLK 330
              NP PW++  +   
Sbjct: 329 AVNNPIPWINAWLSSD 344


>gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 326

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L++ E+ M  R     
Sbjct: 17  NWNRLDDEKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFA 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P++  KA   L+Y +                +      V   + E   FY+GF  
Sbjct: 131 WSEANPNLQRKAEIVLEYYR---------------GDDPLKRKVASTMLESFLFYSGFYA 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLALESQERQDEIKAYTFELLFE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y      +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 236 LYENEVEYTEALYGELGL---TEDVKKFLRYNANKALMNLGYEALFPKEETDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVDTTDDDWD 325


>gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 376

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G    D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L    +++N +    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFATSSNPIPWINAWL 340


>gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI2]
 gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
 gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain
           [Neisseria gonorrhoeae FA 1090]
 gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
          Length = 384

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
 gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
          Length = 375

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
             +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 XTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp.
           FB24]
 gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter sp. FB24]
          Length = 324

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT DE+ +  R     
Sbjct: 15  NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y Q                +      V   + E   FY+GF  
Sbjct: 129 WSTENANLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y H+      +   A   ++++ + AN+    +G E +F  +    NP    +
Sbjct: 234 LYENEVQYTHDLYDSVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 349

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRD 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339


>gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           loihica PV-4]
 gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella loihica PV-4]
          Length = 376

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 146/363 (40%), Gaps = 38/363 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D+      KY    +      +  W P EV + 
Sbjct: 11  NNALLEPMFLGQS-VNV-------ARYDIQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTG 177
            E +HS ++ +II ++  D   +F+   +   I  +A+    Y   L            G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T + +           ++ L    +   V E + FY  FA   +      M G A+  + 
Sbjct: 175 THEINGKTVEVTTRAIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++   ++P +    KE +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340
           G  +GLN     QY+++I N R   + L   +    NP PWM   ++    +    E  V
Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKSVNLVSPYADQSNPLPWMKNWLESDSVQVAPQEVEV 354

Query: 341 TEY 343
           + Y
Sbjct: 355 SSY 357


>gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae
           Ech1591]
 gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591]
          Length = 376

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 151/376 (40%), Gaps = 41/376 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+  L P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++   GL + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     +   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVTINLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339
            G  +GLN     QY+++I N R   +GL   F+   NP PW++  +     +    E  
Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWLVSDNVQVAPQEVE 353

Query: 340 VTEY---QQGAELKWD 352
           V+ Y   Q  +E+  D
Sbjct: 354 VSSYLVGQIDSEINTD 369


>gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta
           [Sanguibacter keddieii DSM 10542]
 gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 325

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 16  NWNRVEDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L   +   + F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLISTQEIDDAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y                  +      V   + E   FY+GF  
Sbjct: 130 WSEENANLQRKAEIVLEYYH---------------GDSPLKRKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E +  +  +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSPAERDEMKAYTFELLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 235 LYENEVQYTADLYDGVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis
           glossinidius str. 'morsitans']
 gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 376

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 142/348 (40%), Gaps = 37/348 (10%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N+  L P+  G+   +V+  R    + D+ +          +      +  W P EV 
Sbjct: 9   VKNDQLLEPMFFGQ---SVNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVD 55

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   
Sbjct: 56  VSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETW 112

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175
           AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +       
Sbjct: 113 AFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDGLIELTSYYHLLG 172

Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            GT   +           ++ L    +     E + FY  FA   +      M G A+  
Sbjct: 173 EGTHQVNGKTVVVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     ++N ++   ++P +    +E QQ+S  +   A   E  +A    
Sbjct: 233 RLIARDEALHLTSTQHMLNLMRSGEDDPEMAEIARECQQESYDLFLLAAQQEKEWASYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             G  +GLN     QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 293 RDGSMIGLNKDILCQYVEYITNIRMQSVGLDLPFATRSNPIPWINSWL 340


>gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
 gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
          Length = 377

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 40/352 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60
            NN    P+  G+  VNV       AR D  +         +EK +    +  W P EV 
Sbjct: 10  KNNALKEPMFLGQP-VNV-------ARYDQQKF------EIFEKLIEKQLSFFWRPEEVD 55

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   
Sbjct: 56  VSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETW 112

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175
           +F E +HS ++ +II ++  D G +F+   E   I  +A     Y   L   +     F 
Sbjct: 113 SFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFG 172

Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            GT +             ++ L    +     E + FY  FA   +      M G A+  
Sbjct: 173 EGTHNIKGEEVKVNLYDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     +IN ++            +E +Q    +  EA   E  +A    
Sbjct: 233 KLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEKEWAEYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
             G  +GLN     QY+++I+N R   +GL+  +   T NP PW++  +   
Sbjct: 293 KDGSMIGLNKDILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWINAWLSSD 344


>gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 376

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V++    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     F  GT   +   
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYNLFGEGTYKVEGKE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LH
Sbjct: 183 CKVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +    ++P +    +E +Q++  +   A   E A+A      G  +GLN 
Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKAWADYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 376

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    K+    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 65  --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGQS 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +     E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFSGGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 303 DILCQYVEYITNIRMQAVGLGAPFKTRSNPIPWINAWL 340


>gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
 gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
          Length = 340

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           F +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   + +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           aurescens TC1]
 gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           aurescens TC1]
          Length = 324

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 122/323 (37%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    NN W+P +VP+ +D+  W +   LT DE+ +  R        
Sbjct: 15  NWNKIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLL 71

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++      +++      P         AF E+VH+ ++  I ++L    +  + F    
Sbjct: 72  DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDDAFRWSL 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   + Y Q                +      V   + E   FY+GF   + 
Sbjct: 132 ENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYLPMY 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E   
Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEARKQEIKDYTFELLFELYE 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y H+      +   A   ++++ + AN+    +G E +F  +    NP    +   
Sbjct: 237 NEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSALSP 293

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  + 
Sbjct: 294 NADENHDFFSGSGSSYVIGKAVN 316


>gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
 gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
          Length = 377

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 134/342 (39%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D G +F+   E   I  +A     Y   L   +     +  GT   +   
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLTNDYHRYGEGTHTINGEE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++            +E +Q+   +  EA   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL   +   T NP PW++  +   
Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSD 344


>gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
 gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
          Length = 323

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  WK    LT +E+ +  R     
Sbjct: 13  NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 67  TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+       P                  V  V  E   FY+GF  
Sbjct: 127 WAEENPLLQKKAQLVLEDYLAQDDP--------------LKKKVASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E       + + ++ +++  
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSQQEQAKVKDEAYSLMFS 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y      +  +       + ++ + AN+    +G EPLF       NP    +
Sbjct: 233 LYEIESQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEPLFPDELCQVNPAIMAA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322


>gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae TN]
 gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae Br4923]
 gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae]
 gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae
           Br4923]
          Length = 325

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W+       N W+P +VP+ +DL  W +   LT  E+ +  R     
Sbjct: 16  NWNWLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   ++Y +              D+   + +     + E   FY+GF  
Sbjct: 130 WSEENNNLQRKAKIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +  +        E ++ +  +L E
Sbjct: 175 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLVLVDDARRAELKEYTYELLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 235 LYDNEVEYTQDLYDRVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 324


>gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
 gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
          Length = 377

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D G +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  GT   +           ++ L    +     E + FY 
Sbjct: 152 EDISHYYDDLIQMTNDYHRYGEGTHQINGEEVTIKLHDLKKKLYVCLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHL     +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  +   T 
Sbjct: 272 ECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           opacus B4]
 gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus
           B4]
          Length = 321

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    D  + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   + Y Q              D+   + +     + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAEIVMDYYQ-------------GDEPLKRKV--ASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 231 LYDNEVDYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320


>gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA 1090]
 gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae 35/02]
 gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI18]
 gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA6140]
 gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA19]
 gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae MS11]
 gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID18]
 gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID1]
 gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID24-1]
 gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID332]
 gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae NCCP11945]
          Length = 377

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 347

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           F +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E +  Y  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
 gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
          Length = 376

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 24/326 (7%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
                  +V++    KY    +      +  W P EV +  D   +     L + E+ + 
Sbjct: 18  MFFGENVNVSRYDTQKYKIFEQLIEKQLSFFWRPEEVDLSTDRKDFA---ALPEHEKHIF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
             NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  D 
Sbjct: 75  LSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVISDP 134

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQE---------------FL 186
            ++F+       IT +A    +Y   L    ++     + D E                L
Sbjct: 135 SKVFDDIVSNEYITKRAESVTKYYDDLIEGVTYYQNLGEGDHEINGETIHVSLRDLKRKL 194

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-- 244
                   V E + FY  FA   +     KM G A+  + I RDE+LHL     ++    
Sbjct: 195 YLTMASVNVLEAIRFYVSFACSFAFAERTKMEGNAKIIKLIARDEALHLTGTQHMMQIWA 254

Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
           +  ++P +     E +++   +  EA   E  +A      G  +GLN     QY+++I N
Sbjct: 255 LGKDDPEMGEIANECKKQVIEIFREAAQQEKDWAEYLFKDGSMIGLNKDILCQYVEYITN 314

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVI 327
           +R   IGL+ +F+  +NP PW++  +
Sbjct: 315 QRLGAIGLDNIFETRQNPIPWINAWL 340


>gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
 gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
          Length = 326

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       NN W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLVNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   ++Y +              D+   + +     + E   FY+GF  
Sbjct: 131 WSEENSNLQRKAEIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEALAPEQREEIKSYTYELLFE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP    +
Sbjct: 236 LYENEVQYTEDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 325


>gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           halifaxensis HAW-EB4]
 gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis
           HAW-EB4]
          Length = 376

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 149/375 (39%), Gaps = 41/375 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D       KY    +      +  W P EV + 
Sbjct: 11  NNALLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  RDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTG 177
            E +HS ++ +II ++  D   +F+   E   I  +A+   +Y   L            G
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAKYYDHLIKLSQAYHLLGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           + + D           ++ L    V   V E + FY  FA   +      M G A+  + 
Sbjct: 175 SHEIDGEIIEVTTREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++   ++P +    KE +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340
           G  +GLN     QY+++I N R   +     +    NP PWM   ++    +    E  V
Sbjct: 295 GSMIGLNETILCQYVEYITNERMKSVNFASPYAEQTNPLPWMKNWLESDSVQVAPQEVEV 354

Query: 341 TEY---QQGAELKWD 352
           + Y   Q  + +  D
Sbjct: 355 SSYLVGQIDSSIDDD 369


>gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 376

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 137/348 (39%), Gaps = 39/348 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60
            NN  L P+  G+  VNV                  +    +EK +    +  W P EV 
Sbjct: 10  KNNQLLEPMFFGQS-VNVAR-------------FDQQKHEIFEKLIEKQLSFFWRPEEVD 55

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   
Sbjct: 56  VSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETW 112

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175
           +F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +       
Sbjct: 113 SFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMTGYYHLLG 172

Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            GT   +           ++ L    +     E + FY  FA   +      M G A+  
Sbjct: 173 EGTHQVNGKTVTVTLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E  +A    
Sbjct: 233 KLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 293 RDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFATRSNPIPWINAWL 340


>gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
 gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
          Length = 329

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 124/343 (36%), Gaps = 33/343 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D KR +    + N+L   K    W        N W+P +VP+ +D+  W +   L  DE+
Sbjct: 9   DMKRAVPRAVNWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSWAT---LHPDEQ 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +  R        +++        +      P     L   AF EAVH+ ++  + ++L 
Sbjct: 63  QLTIRVFTGLTLLDTIQNTVGAPTLMPDALTPHEEAVLTNIAFMEAVHARSYSSVFSTLC 122

Query: 140 L--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
              D  E F    E   + AK+   L       SP                  V  V  E
Sbjct: 123 QTADVDEAFRWSEENEHLQAKSRLILDEYGAAGSPLRKK--------------VASVFLE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   +      K+   A+  + I+RDE++H  +      +++        +E 
Sbjct: 169 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEI 228

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
           +  + +++ +   +E  Y         +       + ++ + AN+    +G E LF  + 
Sbjct: 229 KDFAFSLMFDLYEIEGKYTESLYDGVGL---TEDVKHFLHYNANKALMNLGYEALFPDSV 285

Query: 317 --ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 286 CQVNPAIMAALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 323

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D +    +  + N++   K    W        N W+P ++P+ +D+  WK    LT+DE+
Sbjct: 3   DKRFTTVSAINWNRIQDNKDLEIWN---RLTVNFWLPEKIPLSNDIQSWKQ---LTEDEQ 56

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
           ++  R        +++        + +    P     L   AF EAVH+ ++  I ++L 
Sbjct: 57  VLTTRVFTGLTLLDTIQNTVGAPVLMKDARTPHEEAVLSNIAFMEAVHARSYSSIFSTLC 116

Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
                 E F    E P +  KA   L      S P               +  +  V  E
Sbjct: 117 TTPQIDEAFRWAEENPLLQQKAKIILDDYLQDSGP--------------LEKKIASVFLE 162

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   +      K+   A+  + I+RDE++H  +          E      ++ 
Sbjct: 163 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGYQELDEARQEQL 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-- 315
           + K+ ++L     +E  Y      +  +       + ++ + AN+    +G E LF    
Sbjct: 223 KDKAYSLLLSLYDIECQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEALFPQEL 279

Query: 316 -TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 280 CNVNPAIMAALSPNSDENHDFFSGSGSSYVIGKAVVTEDEDWD 322


>gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora CFBP1430]
 gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 376

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+   +V+  R    + D+ +          +      +  W P EV +
Sbjct: 10  KNNQLLEPMFFGQ---SVNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I ++A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    KE +Q+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFS 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 294 GGSMIGLNKDILWQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 347

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 377

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D G +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  GT   +           ++ L    +     E + FY 
Sbjct: 152 EDISHYYDDLIQMTNDYHRYGEGTHTINGEDVKISLHELKKKLYVCLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHL     +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  +   T 
Sbjct: 272 ECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 347

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       +LN ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTSILNGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
          Length = 377

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii
           Ech703]
 gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703]
          Length = 376

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +        GT   +           ++ L    +     E + F
Sbjct: 150 RARDISGFYDELIELTSYYHLLGEGTHQVNGKTVDINVYQLKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAKVAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QQQCYDLFVMAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 TNPIPWINAWL 340


>gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
 gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
          Length = 324

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 126/345 (36%), Gaps = 34/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++D    +    + N++   K    W        N W+P +VP+ +D+  W +   L  D
Sbjct: 3   DLDHAPAVPRAVNWNRIQDDKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LKPD 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R L      +++       ++      P     L   AF EAVH+ ++  I ++
Sbjct: 57  ERTLTIRVLTGLTLLDTIQNTVGAPSLMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    + P + AK+   LQ     + P                  +  V 
Sbjct: 117 LCSTKEVDDAFRWSEDNPHLQAKSRLILQEYNATADP--------------LKRKIASVF 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +      +   + P     
Sbjct: 163 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQRATEQLPQADRD 222

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +  + +++ +   +E  Y  E      +       + ++ + AN+    +G E LF  
Sbjct: 223 ALKDFAFSLMFDLYEIEAHYTAELYDDLGL---TEDVKAFLHYNANKALQNLGYEALFPA 279

Query: 316 ---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                NP    +   D +   +FF    + Y  G  +      WD
Sbjct: 280 QVCEVNPAILAALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 347

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFELARTHPTIIKRNAPIMGAYDD--------FLRD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           protein [Aeromonas veronii B565]
 gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Aeromonas veronii B565]
          Length = 393

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 29/341 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+           +  W P EV +  D   ++    L   E+ +   NL +    +S+  
Sbjct: 49  KHEVFERLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 105

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++     ++F+       I  
Sbjct: 106 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 165

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +        GT               ++ L    +     E + F
Sbjct: 166 RAGSISHFYDDLIEATALYNLHGEGTHTVAGREVTITLRELKKKLYLCLMSVNALEAIRF 225

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 226 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEIAAEC 285

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q    +  EA + E  +A      G  +GLN     QY+++I N R   +GL+P F  T
Sbjct: 286 EQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMSAVGLQPAFAGT 345

Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
           + NP PW++  +     +    E  V+ Y   Q  +E+  D
Sbjct: 346 KQNPIPWINTWLSSDNVQVAPQEVEVSSYLVGQIDSEVNAD 386


>gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
 gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
          Length = 347

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica ST-640]
 gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica 020-06]
          Length = 377

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFRLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis MC58]
 gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha153]
          Length = 384

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
 gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
          Length = 360

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV + +D   +   N L + E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  +   +F+       I  
Sbjct: 73  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIK 132

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +AN    Y   L   +        G    +           ++ L    +     E + F
Sbjct: 133 RANDIAGYYDDLIQATSDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    KE 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KY 315
           +Q    +   A   E  +A      G  +GLN     QY+++I N R   +GL+P +   
Sbjct: 253 EQVCFDLFKNAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGA 312

Query: 316 TENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 313 NQNPIPWINAWLSSD 327


>gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Dickeya dadantii 3937]
 gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Dickeya dadantii 3937]
          Length = 376

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +        GT   +           ++ L    +     E + F
Sbjct: 150 RAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVNINVYELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAKIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 TNPIPWINAWL 340


>gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
 gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
          Length = 334

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT+ E+ +  R     
Sbjct: 25  NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTEYEKQLTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++    + P     L   AF E+VH+ ++  I ++L    +  E F 
Sbjct: 79  TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + Y +                +      V   + E   FY+GF  
Sbjct: 139 WSEENDQLQRKAQIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEVQTAERRQELKDYTFELLFE 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  +       ++++++ AN+    +G E +F   E   NP    +
Sbjct: 244 LYDNESDYTEALYDEVGL---TEDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333


>gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp.
           MWYL1]
 gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1]
          Length = 377

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 25/327 (7%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
                  +V +    K+    +      +  W P EV +  D   ++    L + E+ + 
Sbjct: 18  MFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSTDRKDFQ---RLEEHEQHIF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
             NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  D 
Sbjct: 75  LSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDP 134

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKD------------ADQEF 185
            ++F+       IT +A+   +Y   L        +   GT D              ++ 
Sbjct: 135 TKIFDDIVTNEEITKRADSVSKYYDRLIEMVNLYNTMGMGTFDVPGRGSIEISMPKLKKA 194

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L        V E + FY  FA   +      M G A+  + I RDE+LHL     ++N +
Sbjct: 195 LYLTIASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQHMLNLM 254

Query: 246 --KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
               ++P +     E Q + R +  EA   E  +A      G  +GLNA    QY+++I 
Sbjct: 255 ASGKDDPEMAVIAAECQDEVRQIFIEAAEQEKEWATYLFKDGSMIGLNAQILGQYVEYIT 314

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVI 327
           N R   +GLE  F    NP PW++  +
Sbjct: 315 NVRMQAVGLETCFATKHNPIPWINAWL 341


>gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 377

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus
           flavithermus WK1]
 gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus
           WK1]
          Length = 345

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 142/342 (41%), Gaps = 19/342 (5%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              N     +    S +     +KY   ++ Y     N W P E+ M DD+  W     L
Sbjct: 12  SHPNKATSIINGKASGILNWNDIKYSHFYDIYKMLLGNFWTPFEINMSDDIKQWH---AL 68

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           ++ ER      +G  +  +S V  N + A+  ++++P  +        +E VH+ ++ Y+
Sbjct: 69  SERERDAFLHIIGLLSILDS-VQPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYV 127

Query: 135 ITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           + S+    ++   F M R  P I  +    ++  +           +    E      V 
Sbjct: 128 LASIEKLSEQHRAFEMARTNPHIYKRNEHVIRVYEAFR--------EQPTVETFCRALVA 179

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            +V EG+ FY+GFA   +L R  KM+  +    YI +DE  H  F   ++  +  ENP +
Sbjct: 180 SLVLEGINFYSGFAFFYNLARNQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQI 239

Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                F       + EA   E  ++   + +   G++    E+Y++++ N+R   +GL+ 
Sbjct: 240 DENGAFSAWIYDYIDEAIRYETEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDD 298

Query: 312 LFKYTENPFPWMSEVIDLK---KEKNFFETRVTEYQQGAELK 350
            +   EN  PW+    D      + +FFE R   Y +  ++ 
Sbjct: 299 RYDADENSMPWIRVFSDENVNLGKTDFFEARPRSYTKTTDVN 340


>gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis 053442]
 gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis 053442]
          Length = 384

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
          Length = 378

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 134/335 (40%), Gaps = 25/335 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V +    K+    +      +  W P EV +  D   +   N L D
Sbjct: 14  DALKEPMFLGNPVNVARYDQQKHRIFEDLIEKQLSFFWRPEEVDVTQDRIDY---NALPD 70

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 71  HEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFYETIHSRSYTHIIR 130

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182
           ++  D G +F+       I  +A+   QY   L   +     F  GT D +         
Sbjct: 131 NIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTTQLYQQFGEGTHDINGNKVTLTLR 190

Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             ++ L    +   V E + FY  FA   +      M G A+  ++I RDE LHL     
Sbjct: 191 GLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLMEGNAKIIRFIARDEQLHLVGTQH 250

Query: 241 VINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           +IN +          E   +       +   A   E A+A      G  +GLN    E Y
Sbjct: 251 MINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEKAWASYLFKDGSMLGLNKQIIEDY 310

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           ++FI N R   IGL PLF    NP PWMS  ++  
Sbjct: 311 VEFITNERMAGIGLPPLFDKRSNPLPWMSTWLESD 345


>gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
 gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
          Length = 324

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 15  NWNRLQDDKDLEVWN---RLTVNFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQNAVGAPAMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P + AKA   L             GT     + L+      V  E   FY+GF  
Sbjct: 129 WSDENPHLQAKARAIL-------------GTYAPGADPLKRKV-ASVFLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRAMERETAERRQELKDYAFGLLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              +E  Y  E      +       + ++ + AN+    +G E LF       NP    +
Sbjct: 235 LYEIEGHYTEELYDDLGL---TEEVKSFLHYNANKALQNLGFEALFPPEACEVNPAILAA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              D +   +FF    + Y  G  +      WD
Sbjct: 292 LSPDSE-NHDFFSGSGSSYVIGRAVATEDDDWD 323


>gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
 gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           F +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RD +LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia
           pestis KIM 10]
 gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 391

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 25  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 71

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 72  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 128

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 129 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 188

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 189 GTHQVNGKTVVVKLRDLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 248

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N +++  ++P +    +E QQ+   +   A   E  +A     
Sbjct: 249 MIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 308

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 309 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 355


>gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
 gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
          Length = 377

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
               +Y   L                    + T   ++  ++    +       E + FY
Sbjct: 152 GDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIKKKLYVCMMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N +  + ++P +    +E Q
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQ 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
           Q+   +  EA   E  +A      G  +GLN     QY+++I N R   +GL+  +    
Sbjct: 271 QECFEIFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLDQAYPGAN 330

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW++  +   
Sbjct: 331 QNPIPWINSWLSSD 344


>gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 384

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAEEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q++   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
 gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
          Length = 384

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
 gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 384

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
 gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
          Length = 376

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   +D+        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQNKNNQLDEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
             GL D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I ++A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKS 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 ITINLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R H +GL+  FK   NP PW++  +
Sbjct: 303 DILCQYIEYITNIRMHAVGLDLPFKTRSNPIPWINSWL 340


>gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis alpha710]
          Length = 384

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 337 NQNPIPWINAWLSSD 351


>gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           piezotolerans WP3]
 gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           piezotolerans WP3]
          Length = 376

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 138/349 (39%), Gaps = 37/349 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D       KY    +      +  W P EV + 
Sbjct: 11  NNAMLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   + S   L   E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------- 169
            E +HS ++ +II ++  D   +F+   E   I  +A     Y   L             
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRATDIAAYYDKLIRLSQACQLLGEG 174

Query: 170 ---SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                      TK   ++ L    V   V E + FY  FA   +    N M G A+  + 
Sbjct: 175 SHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  +    ++P +    KE +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           G  +GLN     QY+++I N R   + LE  +    NP PWM   ++  
Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQSNPLPWMKNWLESD 343


>gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 324

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPAEQQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y Q                +      V   + E   FY+GF  
Sbjct: 129 WSTENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEAVSPERRQEIKDYTFELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y H+      +   A   ++++ + AN+    +G E +F  +    NP    +
Sbjct: 234 LYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis MC58]
 gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria
           meningitidis H44/76]
 gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M13399]
 gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis CU385]
 gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240013]
 gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis H44/76]
 gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240355]
 gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M04-240196]
          Length = 377

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
 gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
          Length = 360

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 73  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILK 132

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201
           +A     Y   L   +     +  G    + E +               +     E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTA 312

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 313 TTNPIPWINAWLSSD 327


>gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 376

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 140/347 (40%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       AR D       KY    E      +  W P E+ +
Sbjct: 10  KNNQLLEPMFLGQT-VNV-------ARYDQQ-----KYPIFEELIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE   ++   A
Sbjct: 57  SRDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTTVVNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     +++ ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 234 LIARDEALHLMGTQHMLDLMRSGKDDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY++++ N R   + L+  F    NP PW++  +
Sbjct: 294 DGSMIGLNQDILCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWINSWL 340


>gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 347

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD--------FMRD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           enterocolitica W22703]
          Length = 376

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340


>gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 388

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + +VN   + M   +   V +    KY        S     W P EV +Q D + +++  
Sbjct: 18  KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDRLTQSQLGYFWRPEEVSLQKDRSDYQT-- 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT +++ +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 76  -LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT---------------TG 177
           YII ++  D  E+F+   +  ++ ++A+   +      + +                 TG
Sbjct: 135 YIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSAHEFDNCQTWDLARQGHLTG 194

Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           T +    +  L        + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 195 TYERKELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254

Query: 236 NFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +++ N  K ++  +    KE +     M       E  +A+    +G  +GLN   
Sbjct: 255 VITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEEKTWANYLFREGSMIGLNDRL 314

Query: 292 CEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
              Y+++IANRR   IGL+P+F      NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 315 LHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQHWLNSKGQQNAPQETEIESYVVGG 373


>gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 359

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%)

Query: 35  LPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
              +    +EK +    +  W P EV +  D   ++    L + E+ +   NL +    +
Sbjct: 12  FDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+      
Sbjct: 69  SIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNE 128

Query: 154 SITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFE 197
            I  +A     Y   L   +        GT   +           ++ L    +     E
Sbjct: 129 EILKRAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVTVNLRALKKQLYICLMSVNALE 188

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--W 253
            + FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +   
Sbjct: 189 AIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEI 248

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             E QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   
Sbjct: 249 AVECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLP 308

Query: 313 FKYTENPFPWMSEVI 327
           F+   NP PW++  +
Sbjct: 309 FETRSNPIPWINAWL 323


>gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. B100]
 gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris]
          Length = 347

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 145/348 (41%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N  +  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGSTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD--------FMRD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586]
 gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586]
          Length = 376

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +        GT   +           ++ L    +     E + F
Sbjct: 150 RAKDISGFYDELIELTSYYHLLGEGTHQINSKTVTVNLYELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PW++  +     +    E  V+ Y   Q  +E+  D
Sbjct: 330 TNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEINTD 369


>gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
          Length = 384

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++  +          E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 337 TQNPIPWINAWLSSD 351


>gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3]
 gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 048L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent
           virus]
          Length = 376

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 11/326 (3%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D     P +Y   ++K+ +  + HW   E+ MQDD+  W   N L++ E+  + + L F
Sbjct: 48  ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  VA    +   +    PE R  L      EA+H  ++ ++I++L L     +  
Sbjct: 106 FTQGDVDVA-VGYVQYLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNL-PDVTYQE 163

Query: 149 YREVPSITAKANWALQYTQTLSS-----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           + +  ++  K  +        ++          G     +E    + +F    EG+  ++
Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSR 262
            F  +L+  R   M  + +  Q+ + DE+ H N  +++ + + +EN  H+     + + R
Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
               +   LE  +       G    L A   + Y+++I NRR   +G  PL+   ENP P
Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA 347
           W+ ++++     NFFE + TEY + +
Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKAS 369


>gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 376

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    LTD E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +I+ +L  D  E+F        I  
Sbjct: 90  RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L                 + +  T      ++ L          E + F
Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVNGTAYTINMYELKKKLYLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257
           Y  FA   +      M G ++  + I RDE+LHL+    ++N      ++P +    +E 
Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAQEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++R +   A   E  +A      G  +GLN     QY+++IAN+R   IGL+  F  +
Sbjct: 270 KEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFDIS 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 SNPLPWMNNYLNSD 343


>gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis Z2491]
 gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis Z2491]
 gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 377

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS223]
 gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223]
 gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678]
          Length = 376

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I +
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 150 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    +++ ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY++FI N+R   + L   +   
Sbjct: 270 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEI 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 369


>gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 377

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDF-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTK------ 179
           + +II ++  D G +F+   E   I  +A     Y   L   +     +  G        
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGKHVIGGEE 182

Query: 180 -----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++            +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL+  +   T NP PW++  +   
Sbjct: 303 DILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSD 344


>gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis FAM18]
 gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis FAM18]
 gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis N1568]
 gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis OX99.30304]
 gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M6190]
 gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M0579]
 gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis ES14902]
 gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis 961-5945]
 gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis G2136]
 gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240149]
          Length = 377

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
 gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
          Length = 323

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                +++ L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYH--------------NEDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      + ++ + AN+    +G E LF   +   NP    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVITEDEDWD 322


>gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
 gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
          Length = 345

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 159/335 (47%), Gaps = 16/335 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N   + +    S+V     +++ WA+  Y +   N W P E+ M +D+  +   + L   
Sbjct: 16  NASTRIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDVKQY---DKLEPK 72

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER    + +G  A  +S+  +   + + R+L++      +   +F+E VH+ ++ Y+++S
Sbjct: 73  EREAFDKIIGLLAFLDSIQTD-YSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSS 131

Query: 138 LGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L     + E+F  ++    +  + ++  +  +   S        +   E      V+ ++
Sbjct: 132 LTTKAKQDEIFEYWKHDKVLRERNDFIAEGYEAFVS--------NPTPETFLHSIVYDII 183

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+ FY+GF+   +L R  KMV  +    YI RDE  H+    ++  ++  E P L ++
Sbjct: 184 LEGLNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNSE 243

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
           +  +  +    +   LEI +A   +     G++    E Y++F+AN+R +++G+E  F+ 
Sbjct: 244 KTHRFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFEG 303

Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
           Y  NP  W+    D+   + +FFE +  +Y + ++
Sbjct: 304 YRNNPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSD 338


>gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           chlorophenolicus A6]
 gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 324

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPVEQQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y Q                +      V   + E   FY+GF  
Sbjct: 129 WSTENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALETVSEERRQEIKDYTFELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y H+      +   A   ++++ + AN+    +G E +F  +    NP    +
Sbjct: 234 LYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 377

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 26/329 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+           +  W P EV +  D   ++    L   E+ +   NL +    +S+  
Sbjct: 33  KHEVFERLIEKQLSFFWRPEEVDVSHDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  + G++F+       I  
Sbjct: 90  RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNNPGQVFDDIVTNEQILK 149

Query: 158 KANWALQYTQTLSSPS----------------FTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +                  T T    ++ L    +     E + F
Sbjct: 150 RAGSISCFYDDLIEATALYNLHGEGTHSVAGQMRTITLRELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +   + E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEISAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q    +  EA + E  +A      G  +GLN     QY+++I N R + +GL+P F   
Sbjct: 270 EQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGA 329

Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY 343
           + NP PW++  +     +    E  V+ Y
Sbjct: 330 KQNPIPWINTWLSSDNVQVAPQEVEVSSY 358


>gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O395]
 gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
 gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
          Length = 389

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 45  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 101

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 102 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 161

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201
           +A     Y   L   +     +  G    + E +               +     E + F
Sbjct: 162 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 221

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 222 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 281

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 282 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 341

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 342 TNNPIPWINAWLSSD 356


>gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 322

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 18/324 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HW+P E+PM DD+  W  K   T  E+ ++ +   FF 
Sbjct: 7   RLSYKPFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGT--EKNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +  +         PE    L   A  E +H   + +++ ++G+ E E +  + 
Sbjct: 65  QADVEVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K  +                  D   E  + L V+    EG+  +  FA +L+
Sbjct: 124 KYKQMKEKCEYL------------KAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   Y +RDE+LH N    +     +EN     K  + + R + +    
Sbjct: 172 FPRFNKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLENNIDKFK-LEAEIREICNAMVH 230

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            E A+       G V  L A   ++Y+++IAN R  Q+G   +++   NP  W+  V++ 
Sbjct: 231 HEDAFIDLAFEMGDVEGLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNT 290

Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352
            +  NFFE + TEY + A +  WD
Sbjct: 291 VEHTNFFENKATEYSKAATKGTWD 314


>gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium
           profundum SS9]
 gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit
           [Photobacterium profundum SS9]
          Length = 377

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
               +Y   L                    + T   ++  ++    +       E + FY
Sbjct: 152 GDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIKKKLYVCMMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N +  + ++P +    +E Q
Sbjct: 211 VSFACSFAFAEREVMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQ 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
           Q+   +  EA   E  +A      G  +GLN     QY+++I N R   +GLE  +    
Sbjct: 271 QECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLEQAYPGAN 330

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW++  +   
Sbjct: 331 QNPIPWINSWLSSD 344


>gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 349

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQY---NELSSREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRD 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339


>gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 376

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 340


>gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           MJ-1236]
 gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae MJ-1236]
          Length = 381

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 37  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 94  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201
           +A     Y   L   +     +  G    + E +               +     E + F
Sbjct: 154 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 213

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 214 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 273

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 274 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 333

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 334 TNNPIPWINAWLSSD 348


>gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 347

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAINLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 377

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 90  RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLSAGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 330

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 132/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    + ++ N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SATNWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
 gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
          Length = 376

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFLGQPV-------------NVARFDQQKFAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           G    +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GNHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++             E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINAWL 340


>gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS185]
 gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS195]
 gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185]
 gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195]
          Length = 386

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 43  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 99

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I +
Sbjct: 100 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 159

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 160 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 219

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    +++ ++   ++P +     E 
Sbjct: 220 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 279

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY++FI N+R   + L   +   
Sbjct: 280 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEI 339

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 340 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 379


>gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 349

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339


>gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
 gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
          Length = 334

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 25  NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++    + P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 79  TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + + +                +      V   + E   FY+GF  
Sbjct: 139 WSEENEQLQRKAQIVMDFYR---------------GDDPLKRKVASTLLESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 184 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLETESPQRREELKDYTFDLLME 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  +       ++++++ AN+    +G E LF       NP    +
Sbjct: 244 LYANEEDYTESLYDEVGLS---EDVKKFLRYNANKALMNLGYEALFPKDATDVNPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333


>gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           HI4320]
          Length = 322

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 125/336 (37%), Gaps = 31/336 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           +R +      ++     E +     N W+P ++P+ +D+  W +   LT  E+ +  R  
Sbjct: 7   SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVF 63

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144
                 +++        +      P     L    F EAVH+ ++  I ++L L  D  +
Sbjct: 64  TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 123

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +    E   +  K++  L+Y Q              D + L+      V  E   FY+G
Sbjct: 124 AYRWSEENTYLQKKSDIILRYYQ--------------DSDPLKKKI-ASVFLESFLFYSG 168

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +         +    L  +  +  + ++
Sbjct: 169 FYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQNIKDFAFSL 228

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L +    E+ Y  +      VG      ++++ + AN+    +G E LF       +P  
Sbjct: 229 LLDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAI 285

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             S   D  +  +FF    + Y  G  +      WD
Sbjct: 286 LSSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 321


>gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella
           tarda FL6-60]
          Length = 376

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 135/339 (39%), Gaps = 24/339 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + +K   + +        +V +    K+    +      +  W P EV +  D   ++
Sbjct: 5   IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS 
Sbjct: 65  ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D   +F+       I  +A     Y   L   +        GT   +  
Sbjct: 122 SYTHIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIESTGYYHLLGEGTHQINGK 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 PVSVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241

Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +     E + +   +  +A   E  +A      G  +GLN
Sbjct: 242 HLTGTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEKEWAGYLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 302 RDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340


>gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 327

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L+  E+ +  R        
Sbjct: 18  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LSAKEKQLTIRVFTGLTLL 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++        + +    P          F EAVH+ ++  I ++L   +D  E +    
Sbjct: 75  DTVQNVVGAPTLMKDAVTPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L Y                D E      V  V  E   FY+GF   + 
Sbjct: 135 ENVALQNKAAIILSYY---------------DGEDPLMKKVASVFLESFLFYSGFYLPMY 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          ++ ++++  ++ +   
Sbjct: 180 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKALALESEERQRQIKEQAFDLIQDLYD 239

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            EI Y  E      VG +    ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 240 NEIRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPASMADVNPAILSALSP 296

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 297 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 326


>gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus
           flagellatus KT]
 gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Methylobacillus flagellatus KT]
          Length = 377

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 25/312 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++   GL + E+ +   NL +    +S+  
Sbjct: 33  KYPVFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+      +I A
Sbjct: 90  RSPNVALLPLVSLPELETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVA 149

Query: 158 KANWALQYTQTLS------------SPSFTTGTKDADQEFLQDLFVFYV----VFEGMWF 201
           +A+    Y   L                    TK  +   L+ L    +    + E + F
Sbjct: 150 RASDISAYYDDLIHYTMLYSQLGKGDHVINGETKTVNLRELKKLLYLCLMSVNILEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P       E 
Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLTGTQHMLNIMRSGQDDPEFAGIASEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   M   A   E  +A      G  +GLN     QY+++I N R   +GL   F   
Sbjct: 270 QDECFEMFKRAAEQEKKWADYLFKDGSMIGLNRDILCQYVEYITNNRMASVGLSAAFPNA 329

Query: 317 E-NPFPWMSEVI 327
           + NP PW++  +
Sbjct: 330 KNNPIPWINTWL 341


>gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+A   + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLAFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio cholerae LMA3894-4]
          Length = 377

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201
           +A     Y   L   +     +  G    + E +               +     E + F
Sbjct: 150 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 270 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 329

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 330 TNNPIPWINAWLSSD 344


>gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
 gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
          Length = 360

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 73  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 132

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201
           +A     Y   L   +     +  G    + E +               +     E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTA 312

Query: 316 TENPFPWMSEVIDLK 330
           T NP PW++  +   
Sbjct: 313 TTNPIPWINAWLSSD 327


>gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
 gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
          Length = 377

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                Y   L                    +      D  ++    L       E + FY
Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHLLNGETVKVSLYDLKKKLYICLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258
             FA   +      M G A+  + I RDESLHLN    +IN ++            +E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDESLHLNGTQHMINLLRNGQDDFIFMQIAEEVK 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           Q+   +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T
Sbjct: 271 QECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPKAYPEAT 330

Query: 317 ENPFPWMSEVIDLK 330
            NP PW++  +   
Sbjct: 331 TNPIPWINAWLSSD 344


>gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
 gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
          Length = 384

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 97  RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 337 TQNPIPWINAWLSSD 351


>gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 323

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  WK    LT++E+ +  R     
Sbjct: 13  NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  + +++       E F 
Sbjct: 67  TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+       P                  V  V  E   FY+GF  
Sbjct: 127 WADENPLLQKKAQLVLEDYLAQGDP--------------LKKKVASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E       + + ++ +++  
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSEQEQAKVKDEAYSLMFS 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y      +  +       + ++ + AN+    +G EPLF       NP    +
Sbjct: 233 LYEIESQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEPLFPDELCQVNPAIMAA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322


>gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 326

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 121/328 (36%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W+    ++D E  +  R     
Sbjct: 17  NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F+
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   L Y              + D    + +     + E   FY+GF  
Sbjct: 131 WSEKNPHLQRKAQIVLDYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 176 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y H    +  +       E+++ + AN+    +G   LF       NP    +
Sbjct: 236 LYENEVEYTHSLYDEVGLS---DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +  +  +FF    + Y  G   + D
Sbjct: 293 LSPNADENHDFFSGSGSSYVMGRAEETD 320


>gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
 gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
          Length = 337

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 126/336 (37%), Gaps = 31/336 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
           +R +      ++     E +     N W+P ++P+ +D+  W +   LT  E+ +  R  
Sbjct: 22  SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVF 78

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144
                 +++        +      P     L    F EAVH+ ++  I ++L L  D  +
Sbjct: 79  TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 138

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +    E   +  K++  L+Y Q              D + L+      V  E   FY+G
Sbjct: 139 AYRWSEENTYLQKKSDIILRYYQ--------------DSDPLKKKI-ASVFLESFLFYSG 183

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +         +    L  ++ +  + ++
Sbjct: 184 FYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQDIKDFAFSL 243

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L +    E+ Y  +      VG      ++++ + AN+    +G E LF       +P  
Sbjct: 244 LLDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAI 300

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             S   D  +  +FF    + Y  G  +      WD
Sbjct: 301 LSSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 336


>gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna]
 gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna]
          Length = 322

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 125/338 (36%), Gaps = 31/338 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +  L    + N+++  K    W       NN W+P ++P+ +D+  W     LT++ERL+
Sbjct: 5   EHTLTRAINWNRVIDEKDAEVWN---RLTNNFWLPEKIPVSNDVQSWHQ---LTEEERLI 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG-- 139
             R        +++      +++      P         AF E+VH+ ++  I ++L   
Sbjct: 59  TMRVFTGLTMLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLCST 118

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            +    F    E  ++  KA   L Y                  +      V   + EG 
Sbjct: 119 KEIDAAFRWSEENANLQKKAEIVLSYYN---------------GDDPLKRKVASTLLEGF 163

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   +      K+   A+  + I+RDE++H  +      +   +      +E + 
Sbjct: 164 LFYSGFYLPMFWSSRGKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLEKETKARQQELKD 223

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
            +  +L E    E  Y  +              ++++++  N+    +G + LF  ++  
Sbjct: 224 YTYELLFELFDNEQEYTQDLYDA---TGQTEDVKKFLRYNGNKALQNLGYDALFSRSDCD 280

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEY--QQGAELKWD 352
            NP    +      +  +FF    + Y   +G   + D
Sbjct: 281 VNPAILSALSPGGDENHDFFSGSGSTYVMAKGVVTEDD 318


>gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
 gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
          Length = 384

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +V  + M   +  +V +    KY    +      +  W P E+ +  D   + +  
Sbjct: 15  KEKNDVLKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN-- 72

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 73  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPSFT 175
           +II ++  D   +F+   +   I A+A     Y   L                    +  
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGEHRVNGKTIV 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L    V  E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLRDLKKKLYLCLMCVNV-LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++   ++P +     E +     +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQEKEWAEYLFKDGSMIGLNKD 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
              QY+++I N R   +GL   F   T+NP PW++  +   
Sbjct: 311 ILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWINAWLSSD 351


>gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-4]
 gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-7]
 gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-4]
 gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-7]
          Length = 376

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 150 RATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQAGKDDPEMGEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY+++I N+R   + L   +   
Sbjct: 270 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQ 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 330 SNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 369


>gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii]
          Length = 309

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 30/321 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGF 88
           +     P+K    ++ +       W   E+ +   DL  W   N LT DER   K  LGF
Sbjct: 2   ERYVTPPIKNLDLYDMWKKHVRCFWTKDEINITSSDLREW---NDLTPDERQFFKCILGF 58

Query: 89  FASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           FAS+  +V++N+ L      +   E R +   Q   E +HS T+  ++T+   +E E   
Sbjct: 59  FASTNIIVSDNLALRFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNE 118

Query: 148 M---YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +       P +  K+ WA+++                +     +  V + V EG+ F + 
Sbjct: 119 LLYSIISWPCLNVKSRWAVKWMND-------------EFATYAERLVAFAVVEGIMFSSS 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  + ++  + G+ +  ++I RDE LH  F   +  +IK   P         K R +
Sbjct: 166 FAGIYWIKQSGLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLPDT-------KVRKI 218

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + E   +E  +    + K  +G+N+   E Y+ F+ +     +G E  F    NPFP+M 
Sbjct: 219 VLEGCEVEKLFVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFGVN-NPFPFMD 277

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
             I ++ + NFFE RVTEY +
Sbjct: 278 N-ISMQGKTNFFERRVTEYTR 297


>gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Nepal516]
 gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Antiqua]
 gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CO92]
 gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 376

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVVVKLRDLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N +++  ++P +    +E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 340


>gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii ATCC 27126]
          Length = 376

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    LTD E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +I+ +L  D  E+F        I  
Sbjct: 90  RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L                 +    T      ++ L          E + F
Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVNGVAHTINMYELKKKLYLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257
           Y  FA   +      M G ++  + I RDE+LHL+    ++N      ++P +    +E 
Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++R +   A   E  +A      G  +GLN     QY+++IAN+R   IGL+  F+ +
Sbjct: 270 KEEARAIFMNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFEIS 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 SNPLPWMNNYLNSD 343


>gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 376

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 25/310 (8%)

Query: 40  GWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
              +EK +    +  W P EV +  D   ++    L + E+ +   NL +    +S+   
Sbjct: 34  HEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGR 90

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  +
Sbjct: 91  SPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEEILKR 150

Query: 159 ANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFY 202
           A     Y   L   S        GT + +           ++ L    +     E + FY
Sbjct: 151 AKDISGYYDDLIEMSSYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N ++             E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEVAVECE 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q+   +   A   E  +A      G  +GLN     QY+++I N R   +GL+  F+   
Sbjct: 271 QQCYDLFVLAAEQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFQTRS 330

Query: 318 NPFPWMSEVI 327
           NP PW++  +
Sbjct: 331 NPIPWINAWL 340


>gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
          Length = 377

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D G +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEEILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  G  + +           ++ L    +     E + FY 
Sbjct: 152 KDIAFYYDDLIKLTADYHRYGEGNHNINGEDVKISLHDLKKKLYLCLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHL     +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFAFMQIAEECKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T 
Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 384

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 337 TQNPIPWINAWLSSD 351


>gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
          Length = 309

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 158/321 (49%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+ WA        NN W P  V M DD+A +   N L   +R M  + L F ++ +
Sbjct: 3   ISPMKHTWAKGILDRMENNTWFPHVVNMADDVASY---NRLNAADRFMFDKALAFLSNLD 59

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +  NNI   I +H+++PE    L RQA+EEA+H  ++  II ++ LD   ++  +    
Sbjct: 60  GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K  + L+ ++ L              E      V  V+ EG++F++GF     L  
Sbjct: 120 LLAQKNQFILKQSRLLGEKF--------SAEGFALSCVSNVLLEGVYFFSGFLSFYLLAD 171

Query: 214 ANKMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
             +M+G A+  +YI RD E  HL+    +++ ++ EN  ++T+ F  K+  +   ++ +E
Sbjct: 172 KGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEME 231

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLK- 330
           I++            N  + E Y++ +AN R  QI      +   +NPFPW+ +      
Sbjct: 232 ISWGKYITKG---VTNPKAIEDYIKHLANLRAEQIQAPFVPYPGVKNPFPWVEQFSKPNT 288

Query: 331 KEKNFFETRVTEYQQGAELKW 351
            EKNFFETRVT+Y+ G  L W
Sbjct: 289 SEKNFFETRVTDYKVGGALVW 309


>gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella
           ictaluri 93-146]
 gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 376

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 130/339 (38%), Gaps = 24/339 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + +K   + +        +V +    K+    +      +  W P EV +  D   ++
Sbjct: 5   IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS 
Sbjct: 65  ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D   +F+       I  +A     Y   L   +        GT   +  
Sbjct: 122 SYTHIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGK 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 PVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241

Query: 234 HLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++             E   +   +  +A   E  +A      G  +GLN
Sbjct: 242 HLTGTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEKEWAGYLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 302 RDILCQYVEYITNIRMQAVGLPLPFETRSNPIPWINAWL 340


>gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
 gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
          Length = 377

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++  +          E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 330 TQNPIPWINAWLSSD 344


>gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 347

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   N L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337


>gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 376

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P E+ +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G+   +           ++ L    +     E + F
Sbjct: 150 RAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     +IN ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F   
Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 TNPIPWINSWL 340


>gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 377

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   +     L+  E+ +   NL +    +S+  
Sbjct: 33  KHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  + +   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I  
Sbjct: 90  RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMDNEHILQ 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+    Y   L   S     F  GT   +           ++ L    V   V E + F
Sbjct: 150 RASDIAHYYDELYQNSQLYSLFGPGTHMVNGEQKHVDLRKLKKQLYLCLVAVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     +IN +    ++P +    ++ 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTSTQHMINILASGKDDPEMAEIAEDC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +++S  +  +A   E  +A      G  +GLN     QY+++I N R   +GL  +F  +
Sbjct: 270 REESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPSIFPDS 329

Query: 317 E-NPFPWMSEVIDLK 330
           + NP PW++  +   
Sbjct: 330 KSNPIPWINTWLSSD 344


>gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae
           ATCC 23330]
          Length = 384

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/352 (23%), Positives = 137/352 (38%), Gaps = 40/352 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           ANN    P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 17  ANNPLTEPMFFGQP-VNV-------ARYDQQ-----KYEVFEKLIEKQISFFWRPEEVDL 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L D E+ +   NL +    +S+   +  +     +S PE   ++   A
Sbjct: 64  SRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWA 120

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------- 170
           F E +HS ++ +II ++  D   +F+   +   I A+A     Y   L            
Sbjct: 121 FFETIHSRSYTHIIRNIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYTQYFNLLGE 180

Query: 171 ------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                     T   ++  ++    L    V  E + FY  FA   +      M G A+  
Sbjct: 181 GKHTVNGKEITISLRELKKKLYLCLMCVNV-LEAIRFYVSFACSFAFAERELMEGNAKII 239

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     ++N ++     L       E Q +   +  +A   E  +A    
Sbjct: 240 KLIARDEALHLTSTQHMLNLMRSGVDDLDMAEIAAELQDECFELFKKAAEQEKEWAAYLF 299

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
             G  +GLN     QY+++I N R   +GL+  F   T+NP PW++  +   
Sbjct: 300 KDGSMIGLNKDILCQYVEYITNHRMLAVGLQAAFPQATQNPIPWINAWLSSD 351


>gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 387

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 139/362 (38%), Gaps = 27/362 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +   E+               V +    KY    +         W P EV +Q D   ++
Sbjct: 14  VFNTEEVDTKKQPMFFGKPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRGDYQ 73

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT +++ +   NL +    +S+      +A   + S PE    +    F E +HS 
Sbjct: 74  Q---LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPELEGCINVWQFMEMIHSR 130

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------------- 175
           ++ YII ++  D  E+F+   +  +I  +A    +      + +                
Sbjct: 131 SYTYIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDAHEYDSGNAWKFAREGH 190

Query: 176 ---TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
              T  +   +  L        + EG+ FY  FA   + G    M G A+    I RDES
Sbjct: 191 PAGTLDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLISRDES 250

Query: 233 LHLNFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
            HL     ++      ++P +    KE +   + M       E A+A     +G  +GLN
Sbjct: 251 QHLVITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEEKAWADYLFKEGSMIGLN 310

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345
           A     Y+++IANRR   IGL+P++      NP PW    ++ K ++N   ET +  Y  
Sbjct: 311 ARLLNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNSKGQQNAPQETEIESYVI 370

Query: 346 GA 347
           G 
Sbjct: 371 GG 372


>gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
 gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 137/189 (72%), Positives = 153/189 (80%)

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           ++TQ L  P+F TGT +AD+ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ
Sbjct: 35  KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           YQYI+RDES+HLNFGID+INQIKIENP LWT  FQ++ R ML EA  LE AY  +TMP+G
Sbjct: 95  YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           F GLNA  CEQYM FI NRRC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EY
Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214

Query: 344 QQGAELKWD 352
           Q G  L WD
Sbjct: 215 QNGGALTWD 223


>gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 330

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    S   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus
           nasoniae]
          Length = 378

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P E+ +  D   ++ 
Sbjct: 8   FSQTKNDQLQEPMFFGQPVNVARYDQQKYPIFEQLIEKQLSFFWRPEEIDVSRDRIDYQ- 66

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 67  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRS 124

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  +   +F+       I  +A     Y   L   +        G+   +   
Sbjct: 125 YTHIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELTSYYHLLGEGSHTINGKS 184

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 185 VIISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 244

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    KE ++    +  +A   E  +A      G  +GLN 
Sbjct: 245 LTGTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEKEWAEYLFSGGSMIGLNK 304

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 DILCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342


>gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 377

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D G +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEEILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  G  + +           ++ L    +     E + FY 
Sbjct: 152 KDIAFYYDDLIKLTADYHRYGEGNHNINGEDVKISLHDLKKKLYVCLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQ 259
            FA   +      M G A+  + I RDE+LHL     +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFEFMQIAEECKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T 
Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia R551-3]
 gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 346

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 147/351 (41%), Gaps = 19/351 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N R+  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L   E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLSNQNRIFEIARTHPTIIKRNAPIMGAYDD--------FMRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAE 348
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++   
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNA 339


>gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus CMCP6]
 gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus YJ016]
 gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Vibrio vulnificus MO6-24/O]
 gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus CMCP6]
 gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016]
 gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 377

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 27/343 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNQTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173
           + +II ++  D   +F+   E   I  +A     Y   L                    +
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLTNDYHRFGEGEHVVNGET 182

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 +  ++    L       E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 IKVSLYELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 241

Query: 234 HLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HLN    +IN ++            +E +Q+   +  EA   E  +A      G  +GLN
Sbjct: 242 HLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEKEWAEYLFKDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLK 330
                QY+++I N R   +GL   +   T NP PW++  +   
Sbjct: 302 KDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWINAWLSSD 344


>gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
 gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
          Length = 320

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +DL  WK+   LT DE+LM  R        
Sbjct: 11  NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           ++L      +++      P         AF E+VH+ ++  I ++L   E   E F    
Sbjct: 68  DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA     Y                D    +   V   + E   FY+GF   + 
Sbjct: 128 ENEALQKKAEIVKSYY---------------DGNDPEKRKVASTMLESFLFYSGFYAPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+      + +  + ++L+E   
Sbjct: 173 WSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y  +      +       ++++++ AN+    +G E LF       NP    +   
Sbjct: 233 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 319


>gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
 gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
          Length = 376

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVVVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++             E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFATRTNPIPWINSWL 340


>gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E +HS  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           ANA-3]
 gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. ANA-3]
          Length = 391

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 48  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 104

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 164

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 165 RATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRF 224

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +     E 
Sbjct: 225 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAEC 284

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY+++I N+R   + L   +   
Sbjct: 285 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAEL 344

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 345 SNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 384


>gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 330

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    S   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 321

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 121/328 (36%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W+    ++D E  +  R     
Sbjct: 12  NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F+
Sbjct: 66  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   L Y              + D    + +     + E   FY+GF  
Sbjct: 126 WSEKNPHLQRKAQIVLDYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 171 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y H    +  +       E+++ + AN+    +G   LF       NP    +
Sbjct: 231 LYENEVEYTHSLYDEVGLS---DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +  +  +FF    + Y  G   + D
Sbjct: 288 LSPNADENHDFFSGSGSSYVMGRAEETD 315


>gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum NCC2705]
 gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           longum NCC2705]
          Length = 330

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y         +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDCVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
 gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
          Length = 377

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 25/339 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              ++  ++ +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRKQFDSLKEPMFLGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDF-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -LNLAEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-------------TTG 177
           + +II ++  D   +F+       IT +A+   +Y   L                    G
Sbjct: 123 YTHIIRNIVNDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKVNLYNTLGLGVHNVPGKG 182

Query: 178 TKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
             D   + L+      +    V E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 EVDVSMKALKKALYVTLASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEAL 242

Query: 234 HLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N +    ++P +    +E +Q+   +  EA   E  +A      G  +GLN
Sbjct: 243 HLTGTQHMLNLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQEKEWAKYLFKDGSMIGLN 302

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A    QY+++I+N R   +GLEP F+   NP PW++  +
Sbjct: 303 AEILGQYVEYISNVRMQAVGLEPAFETKSNPIPWINAWL 341


>gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
          Length = 375

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  + P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F    NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp.
           SN2]
          Length = 376

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    LTD E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +I+ +L  D  E+F        I  
Sbjct: 90  RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149

Query: 158 KANWALQYTQTLSSPSFTTGTK----------------DADQEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +    T+                   ++ L          E + F
Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVDGVPHTINMYELKKKLFLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G ++  + I RDE+LHL+    ++N      ++P +    ++ 
Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWARSKDDPEMAQIAQDC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++R +   A   E  +A      G  +GLN      Y+++IAN+R   IGL+  F+ +
Sbjct: 270 KEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCSYVEYIANQRMTAIGLDAPFEIS 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 SNPLPWMNNYLNSD 343


>gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis 157F]
 gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 330

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 376

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 130/338 (38%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    K+    +      +  W P E+ +  D   ++ 
Sbjct: 6   FSQNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEIDVSRDRIDFQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y  TL   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMTSYYHLLGEGTHQVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLRELKKKLYICLMSVNALEAVRFYVSFACSFAFAERELMEGNAKIIKMIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L      +N ++             E QQ+   +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEKDWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 303 DILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWINAWL 340


>gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           arcticus 273-4]
 gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter arcticus 273-4]
          Length = 377

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   +     L+  E+ +   NL +    +S+  
Sbjct: 33  KHPIFEQLIEKQLSFFWRPEEVDVSRDRMDY---GNLSSHEQHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  + +   +S PE   ++    F E +HS ++ +II ++  D   +F+   +   I  
Sbjct: 90  RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   S     +  GT   +           ++ L    +   V E + F
Sbjct: 150 RAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQITVDLKSLKKQLYLCLMAVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    KE 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++S  +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F  +
Sbjct: 270 YEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPKS 329

Query: 317 E-NPFPWMSEVIDLK 330
           + NP PW++  +   
Sbjct: 330 KSNPIPWINTWLSSD 344


>gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 333

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 24  NWNRVQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGL 77

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 78  TLLDTIQGTVGAISLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 137

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + Y +                +      V   + E   FY+GF  
Sbjct: 138 WSEENEYLQRKAQIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 182

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 183 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEVQTPERRQELKDYTFELLFE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  +       ++++++ AN+    +G E +F   E   NP    +
Sbjct: 243 LYDNETDYTEALYDEVGLS---EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 332


>gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 325

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  WK+   LT++E+ +  R     
Sbjct: 16  NWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++                AF E+VH+ ++  I ++L    +  E F 
Sbjct: 70  TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 130 WAAENEHLQKKAKIVLSYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E ++ +  +L+E
Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESAERQAELKEYTFNLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326
               E+AY H       VG +    ++++ + AN+    +G EP+F  T  N  P +   
Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAILSA 291

Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 330

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     + +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 21  NWNKIEDDKDLDVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 77

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 78  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 137

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 138 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      Q   +  +   +E +  +  +L +   
Sbjct: 183 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLEKVDNARRQEIKNFAFDLLQDLYD 242

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 243 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 299

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 300 NADENHDFFSGSGSSYVIGKAINTEDEDWD 329


>gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 330

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISVPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    ++DDE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L    +    F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTKEIDAAFDWSERNEFLQKKAEIVLDYY-------------EGDSP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                     +E ++ +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYERVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii
           NCTC 11218]
          Length = 377

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 136/340 (40%), Gaps = 26/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNNQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDYA--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186
           +II ++  D   +F+   E   I  +A     +   L   +     F  GT + + E + 
Sbjct: 125 HIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMTNDYHRFGEGTHELNGETVH 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
             QY+++I N R   +GL+  +   T NP PW++  +   
Sbjct: 305 LCQYVEYITNIRMQAVGLDAAYPSATTNPIPWINAWLSSD 344


>gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sibiricum 255-15]
 gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum
           255-15]
          Length = 347

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 20/330 (6%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y    +N W+P E+ M  D+  W   N L++ E+   KR 
Sbjct: 24  GETSSIVNWNDIAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRI 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  +  +S+    I+ +     S+      L   A +E VH+ ++ Y+++SL    ++ 
Sbjct: 81  IGLLSILDSVQTRYILES-AMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLSEQN 139

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F++ ++   +  +  + L   +   +        D   E      V  +V EG+ FY+
Sbjct: 140 RIFDIAKDDDMVMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGINFYS 191

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSR 262
           GFA   +L R  KMVG +    YI RDE  H  F   ++  +  E+P +     F +   
Sbjct: 192 GFAFFYNLARHQKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTKFVY 251

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321
                A  LEI ++   + +   GL+      Y++++AN+R   IGL+ L++ + E+  P
Sbjct: 252 ATFERAVDLEIEWSEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDEDVMP 310

Query: 322 WMSEVIDLKK---EKNFFETRVTEYQQGAE 348
           W+    D      + +FFE +   Y +  +
Sbjct: 311 WIRAYSDDSMNATKSDFFEQKSRSYAKVTD 340


>gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           cryohalolentis K5]
 gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter cryohalolentis K5]
          Length = 377

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   +     L+  E+ +   NL +    +S+  
Sbjct: 33  KHPIFEQLIEKQLSFFWRPEEVDVSKDRMDF---GNLSSHEQHIFLSNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  + +   +S PE   ++    F E +HS ++ +II ++  D   +F+   +   I  
Sbjct: 90  RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   S     +  GT   +           ++ L    +   V E + F
Sbjct: 150 RAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    KE 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++S  +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F  +
Sbjct: 270 YEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPNS 329

Query: 317 E-NPFPWMSEVIDLK 330
           + NP PW++  +   
Sbjct: 330 KSNPIPWINTWLSSD 344


>gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
 gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
          Length = 377

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 25/339 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              ++  ++ +        +V +    K+    +      +  W P EV +  D   ++ 
Sbjct: 6   FNRKRFDSMKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDFQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 65  --HLEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173
           + +II ++  + G +F+   E   IT +A    ++   L                     
Sbjct: 123 YTHIIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLVGLYNTLGPGIHNVPGKG 182

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                  A ++ L    V   V E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 DVNVNLKALKKALYLTMVSVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEAL 242

Query: 234 HLNFGIDVINQI--KIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N +    ++P +    KE + ++  +  EA   E  +A      G  +GLN
Sbjct: 243 HLTGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQEKEWASYLFKDGSMIGLN 302

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A    QY+++I N R   IGL P F+   NP PW++  +
Sbjct: 303 AQILGQYVEYITNIRMQAIGLLPTFETKHNPIPWINAWL 341


>gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 388

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 27/362 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +    K    +          V +    KY    +         W P EV +Q D + ++
Sbjct: 15  VFNKTKVDTKNQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQ 74

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           +   L++ ++ +   NL +    +S+      +A   + S PE    +    F E +HS 
Sbjct: 75  T---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSR 131

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------------- 175
           ++ YII ++  + G++F+   +  ++ ++A+   +   +    +                
Sbjct: 132 SYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHAHQYDGSTMWDLAREGH 191

Query: 176 ---TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                 +   +  L        + EG+ FY  FA   + G    M G A+    I RDES
Sbjct: 192 QGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDES 251

Query: 233 LHLNFGIDVI-NQIKIENPH--LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
            HL    +++    + ++P   L  +E Q     M       E A+A+     G  +GLN
Sbjct: 252 QHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEKAWANYLFRDGSLIGLN 311

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345
                 Y+++IANRR   +G++P++      NP PW    ++ K ++N   ET +  Y  
Sbjct: 312 DRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVV 371

Query: 346 GA 347
           G 
Sbjct: 372 GG 373


>gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 388

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 149/359 (41%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + +VN   + M   +   V +    KY    +         W P EV +Q D + +++  
Sbjct: 18  KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT-- 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+ +++ +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 76  -LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT---------------TG 177
           YII ++  D GE+F+   +  ++  +A+   +      + +                 TG
Sbjct: 135 YIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHAHEYDNGQMWNLARDGHTTG 194

Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
             D    +  L        + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 195 MYDRHELKRKLYRAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254

Query: 236 NFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +++ + K  ++P +    KE +   + M       E  +A     +G  +GLN   
Sbjct: 255 VITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEEKVWADYLFKQGSMIGLNDRL 314

Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
              Y+++IANRR   IGL+P+F      NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 315 LHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 373


>gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
 gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
          Length = 376

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       AR D       K+    +      +  W P EV +
Sbjct: 10  KNNQLLEPMFFGQP-VNV-------ARYDQQ-----KHEVFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+      +I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMTGYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +   V E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVNVSLYELKKKLYMCLMSVNVLEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N +             KE +++S  +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEKEWADYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +G+   F+   NP PW++  +
Sbjct: 294 DGSMIGLNRDILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWINAWL 340


>gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 323

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAMTPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +      +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNSRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 383

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 17  KNNQLLEPMFFGQPV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +++   L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 64  SRDRIDYQN---LPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPELETWVETWS 120

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 121 FSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 180

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 181 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 240

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +    +E QQ+   +   A   E  +A     
Sbjct: 241 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 300

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 301 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 347


>gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 330

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           + + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 376

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               +V +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +   N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           GT   +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GTHQVNGKTVIVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++             E QQ+   +   A   E  +A     
Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL   F    NP PW++  +
Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFATRTNPIPWINSWL 340


>gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 319

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +DL  W++   L  DE+ M  R     
Sbjct: 10  NWNRIQDDKDLEVWD---RLTGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L      +++      P         AF E+VH+ ++  I ++L   E   E F 
Sbjct: 64  TLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFR 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA     Y                D +  +   V   + E   FY+GF  
Sbjct: 124 WSNENEALQRKAQIIKSYY---------------DGDDAEKRKVASTMLESFLFYSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      + +  + ++L+E
Sbjct: 169 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVGESTQERRDDLKDYTYSLLYE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +       ++++++ AN+    +G E LF +     NP    +
Sbjct: 229 LYENEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPHDATDVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 318


>gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia K279a]
 gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain
           [Stenotrophomonas maltophilia K279a]
          Length = 346

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L   E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRIFEIARTHPTIIKRNAPIMGAYDD--------FMRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKK 336


>gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
 gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
          Length = 377

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 90  RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G+ +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 330 TQNPIPWINAWLSSD 344


>gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa 9a5c]
 gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa Temecula1]
 gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           9a5c]
 gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           Temecula1]
          Length = 346

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 19/338 (5%)

Query: 14  EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E R       ++N ++  +     + Y   +  Y     N W+P EV M+ D   +    
Sbjct: 12  EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+      +G  A+ +S     I   +  ++++P           +E +H+ ++ 
Sbjct: 69  ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 127

Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           Y++ S+    ++  +F + R  P+I  +    +Q              ++   E L    
Sbjct: 128 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 179

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP
Sbjct: 180 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 239

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L T             A  LE  +  E +  G  G++     +Y+++ AN+    +G++
Sbjct: 240 ELQTDALTDYVHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQ 298

Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
            L+ + T+N  PW+    D   + + +FFE R   Y++
Sbjct: 299 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 336


>gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 386

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 28/358 (7%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +VN   + M   +   V +    KY    +         W P EV +Q D + +++   
Sbjct: 17  NKVNTKKQPMFFGQPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT--- 73

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+D+++ +   NL +    +S+      +A   + S PE    +    F E VHS ++ Y
Sbjct: 74  LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMVHSRSYTY 133

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG---------------- 177
           II ++  D  E+F+   +   + ++A+   +        +                    
Sbjct: 134 IIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQAHQYDGSTMWDLAREGHTAGQ 193

Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +   +  L        + EG+ FY  FA   + G    M G A+    I RDES HL 
Sbjct: 194 YERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLV 253

Query: 237 FGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              +++ + K  ++P +    KE Q     M       E  +A     +G  +GLN    
Sbjct: 254 ITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEEKMWADYLFKQGSMIGLNDRLL 313

Query: 293 EQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
             Y+++IANRR   IGL+P+F      NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 314 HNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 371


>gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18]
 gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18]
          Length = 325

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  WK+   LT++E+ +  R     
Sbjct: 16  NWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++                AF E+VH+ ++  I ++L    +  E F 
Sbjct: 70  TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 130 WASENEHLQKKAKIVLSYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  +L+E
Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326
               E+AY H       VG +    ++++ + AN+    +G EP+F  +  N  P +   
Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPASVTNVSPAILSA 291

Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
 gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
          Length = 377

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  +   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRA 151

Query: 160 NWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
               +Y   L S +                 FT    +  ++    L       E + FY
Sbjct: 152 GDISKYYDALISATNDYHRYGEGSHSANGVPFTVNLHELKKKLYLCLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAAECE 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-T 316
           Q+   +   A   E  +A      G  +GLN     QY+++I N R   +GL P +   T
Sbjct: 271 QECFDIFKAAAEQEKEWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYDGAT 330

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW++  +   
Sbjct: 331 QNPIPWINSWLSSD 344


>gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
 gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
          Length = 377

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 90  RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G+ +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGSHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 330 TQNPIPWINAWLSSD 344


>gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 323

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L L  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 DNGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +   +  +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDSVHRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
 gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
          Length = 388

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 44  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 100

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 101 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 160

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G+ +             ++ L    +   V E + F
Sbjct: 161 RAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 220

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 221 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 280

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 281 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 340

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 341 TQNPIPWINAWLSSD 355


>gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 323

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPSSQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium
           longum DJO10A]
 gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum DJO10A]
 gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum
           DJO10A]
          Length = 330

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 129/351 (36%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYE---------------GD 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVDL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 377

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  +A
Sbjct: 92  PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
               +Y   L S +        GT   D           ++ L    +     E + FY 
Sbjct: 152 GDISRYYDELISATNDYHRLGEGTHTVDGKTITINLRDLKKKLYLCIMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    KE + 
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAKESEA 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTE 317
           +   +   A   E  +A      G  +GLN     QY+++I N R + +GLE  +   T+
Sbjct: 272 ECFDIFKRAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMNAVGLEHAYTGATQ 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINSWLSSD 344


>gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF
           [Bifidobacterium bifidum PRL2010]
 gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain
           [Bifidobacterium bifidum PRL2010]
          Length = 330

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISVPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    ++DDE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L    +    F+       +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYY-------------EGDSP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                     +E ++ +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYERVGL---TDDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
          Length = 377

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I A
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEYIIA 149

Query: 158 KANWALQYTQTLSSPS----------FTTGTKDAD------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +             G K  +      ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAEEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q++   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 270 QEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPIGFEGA 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  +   
Sbjct: 330 NQNPIPWINAWLSSD 344


>gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M12]
 gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 349

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 144/338 (42%), Gaps = 19/338 (5%)

Query: 14  EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E R       ++N ++  +     + Y   +  Y     N W+P EV M+ D   +    
Sbjct: 15  EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+      +G  A+ +S     I   +  ++++P           +E +H+ ++ 
Sbjct: 72  ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130

Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           Y++ S+    ++  +F + R  P+I  +    +Q              ++   E L    
Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 182

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP
Sbjct: 183 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 242

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L T             A  LE  +  E +  G  G++     +Y+++ AN+    +G+E
Sbjct: 243 ELQTDALTDYVHQAFAHAIELETQWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIE 301

Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
            L+ + T+N  PW+    D   + + +FFE R   Y++
Sbjct: 302 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 339


>gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 384

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P E+ +  D   + +   L + E+ +   NL +    +S+   +
Sbjct: 42  EVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRS 98

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A+A
Sbjct: 99  PNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARA 158

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                Y   L                    +     ++  ++    L    V  E + FY
Sbjct: 159 EDIACYYDDLIEYTQYYNLLGEGVHQVGGKTVVVKLRELKKKLYLCLMCVNV-LEAIRFY 217

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N ++             E Q
Sbjct: 218 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQ 277

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
            +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+P F  + 
Sbjct: 278 DECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNHRMIAVGLDPAFPASN 337

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW++  +   
Sbjct: 338 QNPIPWINAWLSSD 351


>gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp.
           ATCC 51142]
 gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 347

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 23/349 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N + + +    + +V  L   +YGWA   Y +    +W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DY---VNLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+  +  + E+++ +++   +  +  +   Y QTL+         +   E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD--------NPCGE 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 177 TYFMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            K +  +      + +   +       EI + +       +G++  S E Y +++AN R 
Sbjct: 237 AKTKFSY-----SEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLRL 291

Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             IG+  ++   ENP     W       K +  FFET VT Y Q   +K
Sbjct: 292 KAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340


>gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 329

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +DL  WK+   LT  E+LM  R        
Sbjct: 20  NWNKIQDEKDLEVWDRLTGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLL 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           ++L      +++      P         AF E+VH+ ++  I ++L   E   E F    
Sbjct: 77  DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA     Y                D +  +   V   + E   FY+GF   + 
Sbjct: 137 ENAALQKKAEIIKSYY---------------DGDDAEKRKVASTMLESFLFYSGFYAPMY 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+      + +  + ++L+E   
Sbjct: 182 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 241

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y  +      +       ++++++ AN+    +G E LF +     NP    +   
Sbjct: 242 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPHDATNVNPAILAALSP 298

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 299 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 328


>gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
 gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
          Length = 384

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 38/350 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D       KY    +      +  W P EV + 
Sbjct: 18  NNALLEPMFLGQP-VNV-------ARYDQQ-----KYETFEKLIEKQISFFWRPEEVDLS 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   + +   L + E+ +   NL +    +S+   +  + +   +S PE   ++   +F
Sbjct: 65  RDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPELETWIETWSF 121

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG----- 177
            E +HS ++ +II ++  D   +F+   +   I A+A     Y   L   +         
Sbjct: 122 FETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYFNLLGVG 181

Query: 178 -----------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                      ++   ++ L    +   V E + FY  FA   +      M G A+  + 
Sbjct: 182 EHRVNGKTIVVSERELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKL 241

Query: 227 IMRDESLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHL     ++N ++             E Q +   +  +A   E  +A      
Sbjct: 242 IARDEALHLTSTQHMLNLMRGGAEGAEWAEIAAELQNECFELFKKAAEQEKEWAEYLFKD 301

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
           G  +GLN     QY+++I N R   +GL+P F+  T+NP PW++  +   
Sbjct: 302 GSMIGLNKDILCQYVEYITNARMLAVGLQPAFEKATQNPIPWINTWLSSD 351


>gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 376

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 127/310 (40%), Gaps = 25/310 (8%)

Query: 40  GWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
              +EK +    +  W P EV +  D   ++    L D E+ +   NL +    +S+   
Sbjct: 34  HEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPDHEKHIFISNLKYQTLLDSIQGR 90

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  +
Sbjct: 91  SPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILKR 150

Query: 159 ANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFY 202
           A     Y   L   +        GT   +           ++ L    +     E + FY
Sbjct: 151 ARDISVYYDDLIESTGYYHLLGEGTHQVNGKTVIVNLRDLKKKLYLCLMSVNALEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECE 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+   
Sbjct: 271 TQCYDLFVQAAQQEKDWASYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRS 330

Query: 318 NPFPWMSEVI 327
           NP PW++  +
Sbjct: 331 NPIPWINAWL 340


>gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae
           WPP163]
          Length = 320

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNPRERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L  +  + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++               + L       V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha275]
          Length = 345

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 25/309 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   ITA
Sbjct: 97  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G  +             ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++             E 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336

Query: 317 -ENPFPWMS 324
            +NP PW++
Sbjct: 337 NQNPIPWIN 345


>gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
          Length = 346

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 150/335 (44%), Gaps = 16/335 (4%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N     +    S+V     +++ WA+  Y +   N W P E+    D   + +   LT+ 
Sbjct: 17  NASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTET 73

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+   K+ +G  A  +S+  +        +L++          +F+E VH+ ++ Y+++S
Sbjct: 74  EQEAFKKIIGLLAFLDSVQTD-YSXRAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSS 132

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L     + E+F  ++    +  +  + +   +            +   +   +  V+ V+
Sbjct: 133 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVI 184

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+ FY+GFA   +L R  K V  +    YI RDE LH+    ++  ++ +E P L T+
Sbjct: 185 LEGLNFYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTE 244

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +   +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G E  +  
Sbjct: 245 ETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPE 304

Query: 316 TE-NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348
            + NP  W+    D+   + +FFE +  +Y + + 
Sbjct: 305 IKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSA 339


>gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 324

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 126/344 (36%), Gaps = 31/344 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + +K  L +  D      ++     E +     N W+P +VP+ +D+  W +   LTDDE
Sbjct: 1   MSEKLKLVSHVDAINWNRIEDDVDMEVWDRLTANFWLPEKVPLSNDVQSWAT---LTDDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +L+  R        +++      +++      P         AF E+VH+ ++  I ++L
Sbjct: 58  KLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117

Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                  E F    E  ++  KA   + Y +                +      V   + 
Sbjct: 118 CNTREIDEAFRWSTENQNLQKKAQIIVDYYR---------------GDDPLKRKVASTLL 162

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           E   FY+GF   +      K+   A+  + I+RDE++H  +      +           E
Sbjct: 163 ESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQRALANESTERRDE 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +  +  +L++    E+ Y H+      +       ++++ + AN+    +G E +F  T
Sbjct: 223 LKDYTFALLYDLYENEVQYTHDLYDSVGLS---EDVKKFLNYNANKALMNLGYEAMFPST 279

Query: 317 ---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
               NP    +      +  +FF    + Y  G         WD
Sbjct: 280 VTDVNPAILSALSPSSDENHDFFSGSGSSYVIGKAENTEDDDWD 323


>gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
 gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
          Length = 377

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L + E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  G    +           ++ L    +     E + FY 
Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHLN    +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T 
Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M23]
 gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23]
 gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 349

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 19/338 (5%)

Query: 14  EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           E R       ++N ++  +     + Y   +  Y     N W+P EV M+ D   +    
Sbjct: 15  EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+      +G  A+ +S     I   +  ++++P           +E +H+ ++ 
Sbjct: 72  ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130

Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           Y++ S+    ++  +F + R  P+I  +    +Q              ++   E L    
Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 182

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP
Sbjct: 183 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 242

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L T             A  LE  +  E +  G  G++     +Y+++ AN+    +G++
Sbjct: 243 ELQTDALTDYVHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQ 301

Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
            L+ + T+N  PW+    D   + + +FFE R   Y++
Sbjct: 302 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 339


>gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
          Length = 375

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 144/367 (39%), Gaps = 28/367 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 5   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 64  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           F +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E +  Y  FA   +      M G A+  + I RD +LH
Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALH 241

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +    +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 362 DSEVDTD 368


>gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 323

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 118/341 (34%), Gaps = 30/341 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           K+M +          +  G   E +     N W+P +VP+ +D+  WK    LT++E+ +
Sbjct: 2   KKMESGPVQAINWNRMIDGKDLEIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTL 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             R        +++       A+      P     L   AF EAVH+ ++  + ++L   
Sbjct: 59  TIRVFTGLTLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTT 118

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
               E F   +E P +  KA   L        P                  V  V  E  
Sbjct: 119 PQIDEAFRWAQENPLLQKKAQIVLDDYLAEGDP--------------LKKKVASVFLESF 164

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   +      K+   A+  + I+RDE++H  +                    + 
Sbjct: 165 LFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKD 224

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--- 316
           ++ +++     +E  Y         +       + ++ + AN+    +G E LF      
Sbjct: 225 EAYSLMFSLYEIETQYTESLYDPVGL---TEDVKHFLHYNANKALMNLGFEALFPDELCQ 281

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 282 VNPAIMAALSPNADENHDFFSGSGSSYVIGKAVATEDDDWD 322


>gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 377

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  +   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
               +Y   L + +     F  G   AD           ++ L    +     E + FY 
Sbjct: 152 GDISKYYDALIAATNDYHRFGEGNHSADGVPFTVSLRELKKKLYLCLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQ 259
            FA   +      M G A+  + I RDE+LHL     ++N ++             E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRTGQDDPEMAEIAVECEQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TE 317
           +   +   A   E  +A      G  +GLN     QY+++I N R   +GL P ++  T+
Sbjct: 272 ECFDIFKSAAEQEKDWADYLFKDGSMIGLNKQILCQYVEYITNLRMSAVGLRPAYEGATQ 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINSWLSSD 344


>gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 377

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 132/329 (40%), Gaps = 26/329 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+           +  W P EV +  D   ++    L   E+ +   NL +    +S+  
Sbjct: 33  KHEVFERLIEKQLSFFWRPEEVDVSHDRIDFQ---ALPPHEQHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++     ++F+       I  
Sbjct: 90  RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     +   L   +        GT               ++ L    +     E + F
Sbjct: 150 RAGSISHFYDDLIEATALYNLHGEGTHRVAGRDVTITLRELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRSGQDDPEMAEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q    +  EA + E  +A      G  +GLN     QY+++I N R + +GL+P F   
Sbjct: 270 EQACFELFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGA 329

Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY 343
           + NP PW++  +     +    E  V+ Y
Sbjct: 330 KQNPIPWINTWLSSDNVQVAPQEVEVSSY 358


>gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116]
          Length = 377

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203
                Y   L   +     +  G    +           ++ L    +     E + FY 
Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYV 211

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259
            FA   +      M G A+  + I RDE+LHLN    +IN ++            +E +Q
Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFLFMQIAEEEKQ 271

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           +   +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T 
Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATS 331

Query: 318 NPFPWMSEVIDLK 330
           NP PW++  +   
Sbjct: 332 NPIPWINAWLSSD 344


>gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
          Length = 320

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P +VP+ +D+  WK    LT++E+ +  R     
Sbjct: 10  NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 64  TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L        P                  V  V  E   FY+GF  
Sbjct: 124 WAEENPLLQKKAQIILDDYLAEGDP--------------LKKKVASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +                    + ++ +++  
Sbjct: 170 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y         +       + ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYEIETQYTESLYDPVGL---TEDVKHFLHYNANKALMNLGFEALFPDELCQVNPAIMAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVATEDDDWD 319


>gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 322

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D A W++   LT  E+    R     
Sbjct: 13  NWNRLPDPKDAQVWD---RLTGNFWLPEKVPLSNDSASWQT---LTAQEQQTTVRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +++      P     L   AF E+VH+ ++  I ++L       + F+
Sbjct: 67  TLLDTTQATVGAVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTRQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +                +         V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALKRKAASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   E         ++ +  +L+ 
Sbjct: 172 PMYWSSRGKLTNTADIIRLIIRDEAVHGFYIGYKCQRGLAELSEPERSGHREYTYELLNA 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+      +G        YM+F ANR    +G EP+F  ++   NP    +
Sbjct: 232 LYTNEIDYAHDLYDG--LGWT-DDVLPYMRFNANRALANLGYEPMFGPSDCRVNPAVLSA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
                 +  +FF    + Y  G+     +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321


>gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
          Length = 330

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 132/352 (37%), Gaps = 34/352 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W+       N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W+    +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWR---AMSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F+   E   +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYY-------------EGDSP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRR 303
                      E +  +  +L+E    E+ Y      P G         E+++++  N+ 
Sbjct: 217 GLERVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYEPVGL----TQDVEKFLRYNGNKA 272

Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 273 LMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS155]
 gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella baltica OS155]
          Length = 376

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I +
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   D           ++ L    +     E + F
Sbjct: 150 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    +++ ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY++FI N+R   + L   +   
Sbjct: 270 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYLEI 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  + +  D
Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 369


>gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           denitrificans OS217]
 gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella denitrificans OS217]
          Length = 376

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 124/314 (39%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L + E+ +   NL +    +S+  
Sbjct: 33  KYDIFEKLIEKQLSFFWRPEEVDVSRDKIDF---TALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNDEILK 149

Query: 158 KANWALQYTQTLSSPSFTTGTK----------------DADQEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +                         ++ L    +     E + F
Sbjct: 150 RAGDIAKYYDDLIHLTQIFNLHGAGTHLIEGKQVTVNLRVLKKSLYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMAEIAIEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  + ++A   E  +A      G  +GLN     QY+++I N+R   + L   +   
Sbjct: 270 QQQAYDLFYKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVHLPQPYAEI 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM   ++  
Sbjct: 330 SNPLPWMKNWLESD 343


>gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 323

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNSIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P          F EAVH+ ++  I ++L    D  + + 
Sbjct: 68  TLLDTIQNTVGAPALIADALTPHEEAVYSNIGFMEAVHARSYSSIFSTLCQTPDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + ++             D   L+ +    V  E   FY+GF  
Sbjct: 128 WSEENHALQKKAHIILAHYRS-------------DDPLLKKV--ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDATRRQQVKNFAFDLLQD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y  E      VG      + ++ + AN+    +G E LF       NP    +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPAMAEVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira
           crunogena XCL-2]
 gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 377

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 19/306 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 39  KHPIFEKLIEKQLSFFWRPEEIDLSSDRGEYAN---LPEHEKHVFISNLKYQTLLDSVQG 95

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 96  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVSDPSLVFDDIVANEEIVK 155

Query: 158 KANWALQYTQTLSS-------PSFTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFA 206
           +A     Y   L +             T DA ++ ++      +    V E + FY  FA
Sbjct: 156 RAISVTVYYDKLINLTNRMYAEEIDLETNDAFRKEIKTALFLTIVSVNVLEAIRFYVSFA 215

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWT--KEFQQKSR 262
              S    + M G A+  + I RDE+LHL+    +IN +    ++P +    KE ++K  
Sbjct: 216 CSFSFAERSLMEGNAKIIKLIARDEALHLSGTQHLINILSEGKDDPEMMEIAKENEEKVY 275

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            +  EA   E  +A      G  +GLNA   + Y+++I N R   I L P+F+   NP P
Sbjct: 276 EIFREAAEQEKEWADYLFKDGSMIGLNASILKDYVEYITNTRIKAIKLNPIFENKSNPLP 335

Query: 322 WMSEVI 327
           WM+  +
Sbjct: 336 WMNNWL 341


>gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 330

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 133/352 (37%), Gaps = 34/352 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W+       N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W++   +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F+   E   +  KA   L Y              + D  
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYY-------------EGDSP 158

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRR 303
                      E +  +  +L+E    E+ Y      P G         E+++++  N+ 
Sbjct: 217 GLELVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYEPVGL----TQDVEKFLRYNGNKA 272

Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 273 LMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
          Length = 322

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L  DE+LM  R        
Sbjct: 13  NWNDIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNADEKLMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  I ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
               +  KA+  L Y                     +   V   + E   FY+GF   + 
Sbjct: 130 NNEFLQKKAHIVLDYYH---------------GNDAEKRKVASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         +       ++++ + AN+    +G E LF   E   NP    +   
Sbjct: 235 NEVLYTETLYDTLGL---TEDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
             ++  +FF    + Y  G  
Sbjct: 292 AAEENHDFFSGSGSSYTIGTA 312


>gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio
           sp. Ex25]
 gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
 gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. Ex25]
 gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
          Length = 377

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              +K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNQKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+   E   I  +A     Y   L   +     +  G    +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGET 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           LN    +IN ++            +E +Q    +  EA   E  +A      G  +GLN 
Sbjct: 243 LNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL   +   T NP PW++  +   
Sbjct: 303 DILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSD 344


>gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 376

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 125/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P E+ +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        G+   +           ++ L    +     E + F
Sbjct: 150 RAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           Q +   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F   
Sbjct: 270 QSQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTR 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           oneidensis MR-1]
 gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           oneidensis MR-1]
          Length = 376

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +   N L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNHEILR 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    ++   L   +        GT   D           ++ L    +     E + F
Sbjct: 150 RATDIAEFYDHLIKLTQIYHLLGEGTHVIDGEPVEVNTRTLKKALYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMGEIAIEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E  +A      G  +GLN     QY+++I N+R   + L   +   
Sbjct: 270 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQ 329

Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
            NP PWM   ++    +    E  V+ Y   Q  A +  D
Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDAAVDSD 369


>gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
          Length = 377

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                Y   L                    +      D  ++    L       E + FY
Sbjct: 152 KDIAHYYDDLIQTTNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258
             FA   +      M G A+  + I RDE+LHLN    +IN ++            +E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAK 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           Q    +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T
Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEAT 330

Query: 317 ENPFPWMSEVIDLK 330
            NP PW++  +   
Sbjct: 331 TNPIPWINAWLSSD 344


>gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
 gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
          Length = 330

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYE---------------GD 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  +       E+++++  N+  
Sbjct: 217 GIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDRVGL---TEDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 329

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNTVPDDKDSEVWD---RLTGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLLPDAKTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                         V   + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIVMSYY---------------KGADPLKKKVASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E P    +E +  +  +L+E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQNGYNELPAEKQEEIKGYTFDLLYE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 323

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTAEEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L    D  E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KAN  L++                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENIALQKKANIILEHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF   +   NP    +   
Sbjct: 236 NEVRYTADLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPADQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 323

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 323

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 384

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY           +  W P EV +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 40  KYIAFENLIEKQISFFWRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +     +S PE   ++   AF E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 97  RSPNVGFLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYILA 156

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   +           ++ L    +   V E + F
Sbjct: 157 RAEDIACYYDDLIEYTQYFNLLGEGTHTVNGKIVEVSLHELKKKLYLCLMCVNVLEAIRF 216

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   E        ++ 
Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRGGSEGTEWAQIAQDL 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           QQ+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F   
Sbjct: 277 QQECFDLFVKAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLPVAFPKS 336

Query: 316 TENPFPWMSEVIDLK 330
           T+NP PW++  +   
Sbjct: 337 TQNPIPWINAWLSSD 351


>gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
 gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
          Length = 323

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +D++ W +   LT  E+ +  R     
Sbjct: 14  NWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDISSWNT---LTAAEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++       ++      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 68  TLLDTIQNTVGAPSLMSDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                D   L+      V  E   FY+GF  
Sbjct: 128 WSEENSALQNKAKIIMSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +  ++      KE +  + ++L +
Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E      VG      ++++ + AN+    +G E LF       +P    +
Sbjct: 233 LYENEVNYTQELY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDVVTDVSPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              D  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDDDWD 322


>gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia
           pestis KIM 10]
 gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Nepal516]
 gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Antiqua]
 gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CO92]
 gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 323

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L L  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA+   Q+                + + L+      V  E   FY+GF   + 
Sbjct: 131 DNGPLQKKADIISQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           tumefaciens str. C58]
 gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           tumefaciens str. C58]
          Length = 324

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   L  +E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGAVRLMPDSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   +               + L+      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSAIIMREYDS--------------GDPLKKKI-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALDRLGEAQRQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +       +Q++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEDLYDGVGL---TEDVKQFLHYNANKALMNLGYEALFPAEACRVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus 10329]
          Length = 377

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                Y   L                    +      D  ++    L       E + FY
Sbjct: 152 KDIAHYYDDLIQTTNDYHRYGEGEHVINGETVKISLYDLKKKLYICLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258
             FA   +      M G A+  + I RDE+LHLN    +IN ++            +E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAK 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           Q    +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T
Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEAT 330

Query: 317 ENPFPWMSEVIDLK 330
            NP PW++  +   
Sbjct: 331 TNPIPWINAWLSSD 344


>gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 323

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNRIQDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWNT---LTAAEKQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 68  TLLDTIQNTVGAPCLMPDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D   L+      +  E   FY+GF  
Sbjct: 128 WSEENNALQNKAKIILSYY--------------CDSHPLKKKI-ASIFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      KE +  S ++L +
Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLAQYDENTQKEIKDFSFSLLFD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
               E+ Y  E      VG +    ++++ + AN+    +G E LF  T          +
Sbjct: 233 LYENEVKYTQELY--DTVGWS-EDVKKFLHYNANKALMNLGYEALFPDTVTDVSAAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              D  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPDANENHDFFSGSGSSYIIGKAVSTEDDDWD 322


>gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Roseovarius sp. HTCC2601]
          Length = 326

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LT++ER +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++  +    A+      P     L   AF EAVH+ ++  I ++L       E F 
Sbjct: 71  TLLDTIQNSVGAPAMMPDCLTPHEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P + AKA   L+     + P                  +  V  E   FY+GF  
Sbjct: 131 WSDENPHLQAKARAVLETYAPEADP--------------LKRKIASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLELESPERRQELKDYAFGLLFE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              +E  Y  E      +       + ++ + AN+    +G E LF       NP    +
Sbjct: 237 LYDIEARYTEELYDGIGL---TEEVKAFLHYNANKALQNLGFEALFPPEAAEVNPAILAA 293

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              D +   +FF    + Y  G  +      WD
Sbjct: 294 LSPDSE-NHDFFSGSGSSYVIGRAVATEDDDWD 325


>gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
 gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
          Length = 376

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 37/347 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+  VNV       AR D       K+    +      +  W P EV +
Sbjct: 10  KNNPLLEPMFFGQS-VNV-------ARYDQQ-----KHEIFEKLIEKQLSFFWRPEEVDV 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++    L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SCDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176
           F E +HS ++ +II ++  D   +F+       I  +A     Y   L   +        
Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGE 173

Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           G    +           ++ L    +     E + FY  FA   +      M G A+  +
Sbjct: 174 GRHQVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N ++   ++P +     E QQ+   +   A   E  +A     
Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFR 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I+N R   +GLE  FK   NP PW++  +
Sbjct: 294 DGSMIGLNKDILCQYVEYISNIRMQAVGLELPFKTRSNPIPWINAWL 340


>gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           sp. PRwf-1]
 gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter sp. PRwf-1]
          Length = 377

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 132/343 (38%), Gaps = 25/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I +  K   + +        +V +    K+    +      +  W P EV +  D   + 
Sbjct: 5   IFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY- 63

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS 
Sbjct: 64  --GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D   +F+   E   I  +A+    Y   L   S     F  GT   +  
Sbjct: 122 SYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNGE 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +   V E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 EKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEAL 241

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     +IN +          E   +       +  +A   E  +A      G  +GLN
Sbjct: 242 HLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330
                QY+++I N R   +GL  +F  ++ NP PW++  +   
Sbjct: 302 KDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSD 344


>gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 325

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +D+  W +   L   E+ M  R     
Sbjct: 16  NWNRIEDEKDLEVWD---RLTGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L   E   E F 
Sbjct: 70  TLLDTVQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L Y +                E  +   V   + E   FY+GF  
Sbjct: 130 WSEENEYLQKKAKIILDYYR---------------GEDAEKRKVASTMLESFLFYSGFYA 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E Q+ + +++ +
Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKALAKASQERRDELQEYAYSLVMD 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +          + +++  AN+  + +G E LF   +   NP    +
Sbjct: 235 LYDNEELYTESLYDE---MGLTEDVKMFLRHNANKALNNLGYEALFGPDQTAVNPSILAA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGTAEATTDDDWD 324


>gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio
           salmonicida LFI1238]
 gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio
           salmonicida LFI1238]
          Length = 377

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              EK   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FRQEKNDQLKEPMFLGNSVNVARYDQQKFQVFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +I+ ++  D   +F+   E   I  +A     Y   L   +     F  GT   +   
Sbjct: 123 YTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHTVNGEE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 IIVSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E +Q    +   A   E  +A+     G  +GLN 
Sbjct: 243 LTSTQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEKEWANYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL   +   T+NP PW++  +   
Sbjct: 303 DILCQYVEYITNLRMKAVGLSGAYDGATQNPIPWINSWLSSD 344


>gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 326

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 117/322 (36%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D++ W   N LT+ E+ +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++        +      P         +F E+VH+ ++  I ++L    D  + + 
Sbjct: 71  TLLDTIQGTIGAPTLIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L   +              D   ++ +    V  E   FY+GF  
Sbjct: 131 WSEENPHLQNKAELILNRYR-------------MDDPLMRKV--ASVFLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q          +E +  +  +L E
Sbjct: 176 PMYWASRGKLTNTADLIRLIIRDEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       + ++ + AN+    +G EPLF       NP    +
Sbjct: 236 LYDNEVHYTESLYDDVGL---TEEVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                ++  +FF    + Y  G
Sbjct: 293 LSPGAEENHDFFSGSGSSYVIG 314


>gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas
           auensis DSM 9187]
 gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187]
          Length = 377

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY           +  W P EV +  D   +++   L   E+ +   NL +    +S+  
Sbjct: 33  KYEVFERLIEKQLSFFWRPEEVDVSQDRIDYQT---LPPHEQHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVVNEQIIK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT   +           ++ L    +     E + F
Sbjct: 150 RAEDIAGYYDELIELTQYWQLLGEGTHQVNGKTVVVSRRELKKKLYLCLMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++  N         +E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNILREGNDDPEMAEIAREL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +   +  +A   E  +A      G  +GLN     QY++FI N R   +GL   F   
Sbjct: 270 HDECFALFKKAAEQEKEWASYLFKDGSMLGLNKDILCQYVEFITNVRMQGVGLPLAFDAD 329

Query: 317 -ENPFPWMSEVIDLK 330
            +NP PW++  ++  
Sbjct: 330 RQNPLPWINTWLNSD 344


>gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 323

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFTFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 376

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 133/342 (38%), Gaps = 24/342 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I +      + +        +V++    K+    +      +  W P EV +  D A +K
Sbjct: 5   IFSQVPNDPLKEPMFFGNNVNVSRYDQQKHPVFEQLIEKQLSFFWRPEEVDLSRDRADFK 64

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L   E+ +   NL +    +S+   +  +A    +S PE   ++   AF E +HS 
Sbjct: 65  ---KLPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPELETWVETWAFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  D  E+F+      SI  +A+    Y  +             GT   +  
Sbjct: 122 SYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQCYYNLLGEGTHMINDV 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +  L    V   V E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 PVVVNMRELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVMEGNAKIIKLIARDEAL 241

Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     +I   +   ++P +     E + +   +   A   E  +A      G  +GLN
Sbjct: 242 HLTGTQQMIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQEKEWAKFLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           A     Y+++I N R    G + +F  T+NP PWM+  +   
Sbjct: 302 ADILGDYVEYITNVRLKASGYKNVFPTTQNPLPWMNSWLSSD 343


>gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri
           ES114]
 gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
 gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Vibrio fischeri ES114]
 gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
          Length = 377

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 25/342 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              EK   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FRQEKNDQLKEPMFLGNSVNVARYDQQKFQIFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  +   +F+   E   I  +A     Y   L   +     F  GT   +   
Sbjct: 123 YTHIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHVLNGQE 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDESLH
Sbjct: 183 ITISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLH 242

Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E +Q+   +   A   E  +A+     G  +GLN 
Sbjct: 243 LTSTQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEKQWANYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
               QY+++I N R   +GL   ++  T+NP PW++  +   
Sbjct: 303 DILCQYVEYITNLRMKAVGLNSAYEGATQNPIPWINSWLSSD 344


>gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
 gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
          Length = 326

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 131/345 (37%), Gaps = 34/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            V+  R      + N++   K    W+      +N W+P +VP+ +D+  WK+   LT +
Sbjct: 5   QVELLRHPAEAINWNRVQDEKDTEVWD---RLTSNFWLPEKVPLSNDVQSWKT---LTAE 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  +        +++      +++                AF E+VH+ ++  I ++
Sbjct: 59  EQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSSIFST 118

Query: 138 L--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       E F   +E   +  KA+  L+Y                  +      V   +
Sbjct: 119 LSSMKQIDEAFRWSKENEHLQRKADIVLRYY---------------KGDDPLKKKVASTL 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +      +  ++      +
Sbjct: 164 LESFLFYSGFYLPMYFSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLLQESPQRQQ 223

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
           E +  +  +L E    E+AYA        VG      ++++ + AN+  + +G E LF  
Sbjct: 224 ELKDYTYDLLDELYENEVAYAEALY--DSVGWT-EDVKKFLHYNANKALNNLGYEALFPR 280

Query: 315 --YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                +P    S   +  +  +FF    + Y  G  +      WD
Sbjct: 281 EMTDVSPAILSSLSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325


>gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
 gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
          Length = 325

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 122/333 (36%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W S   LT +E+ +  R     
Sbjct: 15  NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L    +  + F 
Sbjct: 69  TLLDTIQNTVGAPALMADAVTPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   + AK+   L+     SSP                  +  V  E   FY+GF  
Sbjct: 129 WSEENEFLQAKSRLILEEYNATSSP--------------LKKKIASVFLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  + T+L +
Sbjct: 175 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLSEAERTEIKDFAFTLLFD 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y  +      +       + ++ +  N+    +G E LF  T    NP    S
Sbjct: 235 LYDLETKYTEDLYDPLGL---TEDVKHFLHYNGNKALQNLGFEGLFPETICQVNPAIMAS 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324


>gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           pealeana ATCC 700345]
 gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC
           700345]
          Length = 376

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 141/363 (38%), Gaps = 38/363 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR D       KY    +      +  W P EV + 
Sbjct: 11  NNAMLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  RDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------- 169
            E +HS ++ +II ++  D   +FN   E   I  +A+    Y   L             
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILKRASDIANYYDHLIKLSQAYHLLGEG 174

Query: 170 ---SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                      TK   ++ L    V   V E + FY  FA   +      M G A+  + 
Sbjct: 175 SHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  +    ++P +    KE +Q +  +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFIKAAEQEKEWAKYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340
           G  +GLN     QY+++I N R   +     +    NP PWM   ++    +    E  V
Sbjct: 295 GSMIGLNETILCQYVEYITNERMKAVNFASPYAEQTNPLPWMKNWLESDSVQVAPQEVEV 354

Query: 341 TEY 343
           + Y
Sbjct: 355 SSY 357


>gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sp. AT1b]
 gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b]
          Length = 346

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 20/330 (6%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y    +N W+P E+ M  D+  W     LT+ E+   KR 
Sbjct: 23  GETSSIVNWNDIAYPQFYTIYKQLLSNFWIPDEISMSKDMQQW---PQLTEREQDAFKRI 79

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  +  +S V    +L      S+      L   A +E VH+ ++ Y+++SL    ++ 
Sbjct: 80  IGLLSILDS-VQTRYILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLAEQN 138

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +FN+ ++   +  +  + L   +           +  + E      V  V+ EG+ FY+
Sbjct: 139 RIFNIAKDDEMVMKRNQFILDLYEAFR--------ETPNAENFAKSLVASVILEGINFYS 190

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSR 262
           GFA   +L R  KMVG +    YI RDE  H  F   ++  +  ENP +    +F Q   
Sbjct: 191 GFAYFYNLARHQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQFVY 250

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFP 321
             + EA  LEI +    + +   GL+      Y++++AN+R   IGL  L++   E+  P
Sbjct: 251 DTMAEAVDLEIEWCEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDEDVMP 309

Query: 322 WMSEVID---LKKEKNFFETRVTEYQQGAE 348
           W+    D      + +FFE +   Y +  +
Sbjct: 310 WIRAYSDDSLNATKSDFFEQKSRSYAKVTD 339


>gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           schoenbuchensis R1]
          Length = 324

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 124/343 (36%), Gaps = 31/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TRISTKNPVICAVNWNKLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTVQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E  ++  KA   L+  +                + L+       
Sbjct: 116 TLCSTAEVDDAFRWSEENANLQKKATLVLERYEA--------------SDPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYVGYKFQLGFAKLDEAKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  +  ML +   +E  Y  +      +       + ++ + AN+    +G EPLF 
Sbjct: 221 QEIKDFAFNMLFDLYSIECKYTEDLYDAIGL---TEDVKVFIHYNANKALMNLGFEPLFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP    +   +  +  +FF    + Y   +      D
Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAVATTDD 320


>gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 325

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 30/334 (8%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
            D      L+     E +     N W+P +VP+ +D+  W +   LT  E+ +  R    
Sbjct: 11  PDAVNWNRLRDPKDLEIWNRLTVNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTG 67

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELF 146
               +++       A+      P     L   AF EAVH+ ++  + ++L    +  + F
Sbjct: 68  LTLLDTIQNMIGAPALMADAITPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAF 127

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
               E P + AK+   L                DA    L+      V  E   FY+GF 
Sbjct: 128 RWSAENPQLQAKSRLILNEY-------------DASGTPLKKKI-ASVFLESFLFYSGFY 173

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
             +      K+   A+  + I+RDE++H  +      +          +E +  + +++ 
Sbjct: 174 LPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVSEAERQEIKDFAFSLMF 233

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWM 323
           +   +E  Y         +       + ++ + AN+    +G E LF       NP    
Sbjct: 234 DLYAIEAKYTESLCDGVGL---TEDVKHFLHYNANKALMNLGYEALFPDAVCAVNPAIMA 290

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +   +  +  +FF    + Y  G  +      WD
Sbjct: 291 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324


>gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 320

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L  +  + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++               + L       V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
 gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
          Length = 323

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +    E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNARRLEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPISQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp.
           TM1040]
 gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Ruegeria sp. TM1040]
          Length = 338

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 33/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 16  DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   +F EAVH+ ++  + ++
Sbjct: 70  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNISFMEAVHARSYSSVFST 129

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  E F    E   + AK+   L             G  DA    L+      V 
Sbjct: 130 LCQTTEVDEAFRWSAENEHLQAKSRLIL-------------GEYDATASPLRKKI-ASVF 175

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 176 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERASEAERK 235

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF  
Sbjct: 236 ELKDFAFGLLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPE 292

Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                NP    +      +  +FF    + Y  G  +      WD
Sbjct: 293 ETCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAVATEDDDWD 337


>gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    ++   
Sbjct: 67  DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KAN  L+Y Q                + L+      V  E   FY+GF   + 
Sbjct: 127 ECESLQRKANLVLEYYQA--------------DDPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSEARREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E++Y                 + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELSYTEALYAGSGWE---DEVKAFLCYNANKALMNLGYEALFPPDMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
 gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
          Length = 377

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  +A
Sbjct: 92  PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151

Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                Y   L                    +      D  ++    L       E + FY
Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYVCLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258
             FA   +      M G A+  + I RDE+LHLN    +IN ++            +E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAK 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316
           Q    +  EA   E  +A      G  +GLN     QY+++I N R   +GL   +   T
Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPMAYPEAT 330

Query: 317 ENPFPWMSEVIDLK 330
            NP PW++  +   
Sbjct: 331 SNPIPWINAWLSSD 344


>gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           arilaitensis Re117]
          Length = 324

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT+DE+L+  R     
Sbjct: 15  NWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDIQSWGT---LTEDEKLLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTLQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA     Y                  E      +   + E   FY+GF  
Sbjct: 129 WSTENVNLQKKAQIIESYYH---------------GEDPLKRKIASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +++E
Sbjct: 174 PMHWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLENETEERKQELKDYTFELMYE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y H+      +       ++++ + AN+    +G E +F  T    +P    +
Sbjct: 234 LYENEVQYTHDLYDPVGLS---EDVKKFLHYNANKALMNLGYEAMFPSTVTDVSPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 319

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNHIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    ++   
Sbjct: 67  DTIQNTVGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KAN  L Y Q                E L+      V  E   FY+GF   + 
Sbjct: 127 ESESLQRKANLVLDYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +   +  +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSDVRREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E++Y  E       G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELSYTEELYAG--TGW-EEEVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 394

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 145/359 (40%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +  V+   + M   +   + +    KY    +         W P EV +Q D + +K+  
Sbjct: 24  KNHVDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT-- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT +++ +   NL +    +S+      +A   + S PE    +      E +HS ++ 
Sbjct: 82  -LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYT 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT---------------G 177
           YII ++  D  E+F+   + P I ++A    +    L +                    G
Sbjct: 141 YIIKNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSEHEFDSGNAWKFAAEGHPAG 200

Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           T D    +  L    +   + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 201 TYDRKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHL 260

Query: 236 NFGIDVINQIKIENPHLWTKEFQQK---SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
                +I + +  +     +  +++      M   A   E A+A      G  +GLN   
Sbjct: 261 VLTQQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEEKAWAQYLFKNGSMIGLNEKL 320

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
             QY++F ANRR   IGL+P++  +   NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 321 LGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQNAPQETEIESYVIGG 379


>gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 323

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 123/323 (38%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   L  +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +  D  + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                + + L+      V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +      +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDD--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  + 
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVS 315


>gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 377

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 146/341 (42%), Gaps = 29/341 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P E+ +  D   +   + L+  E+ +   NL +    +S+  
Sbjct: 33  KFPVFEQLIEKQLSFFWRPEEIDVSKDRLDF---SNLSVHEQHIFLSNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +    +   +S PE   ++   +F E +HS ++ +II ++  D  ++F+   + P I  
Sbjct: 90  RSPNAVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKVFDDIVDNPFILE 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    ++   L   S     +  G    D           +  L    V   V E + F
Sbjct: 150 RATGIAKFYDELYQLSQLYNLYGEGRHVIDGKPVEVNLRLLKTKLYLCLVAINVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    +IN ++   ++P +    ++ 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKMIARDEALHLNGTQHMINLMQWGKDDPDMVEIAQDC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ++  +  +A   E A+A      G  +GLN     QY+++I N R   IGL P+F   
Sbjct: 270 QQQAIEIFKDAAEQEKAWAKYLFKNGSMIGLNENILVQYVEYITNLRMDAIGLPPIFAAI 329

Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
           + NP PW++  +     +    E+ +T Y   Q  AEL  D
Sbjct: 330 KNNPIPWINAWLSSDNVQVAPQESEITSYLVGQIDAELSDD 370


>gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
 gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
          Length = 322

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+  E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
 gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
          Length = 377

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 129/315 (40%), Gaps = 25/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   +    GL D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++ +D   +F+       I  
Sbjct: 90  RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNISVDPSSIFDDIVRNKHILE 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L         F  G  + +           ++ L    +   V E + F
Sbjct: 150 RAQDISKYYDELIELTQFYEMFGEGVHNVNGREIKVSIYELKKRLYLCLMAVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N +    ++P +     E 
Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTSTQHMLNIMSSGADDPEMAHIASEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + +   +   A   E A+A      G  +GLN     QY+++I N R   +GLE  F  +
Sbjct: 270 KNQCFELFKSAAEQEKAWAEYLFKDGSMIGLNKEILIQYVEYITNIRMSAVGLEEAFPQS 329

Query: 317 E-NPFPWMSEVIDLK 330
           + NP PW++  +   
Sbjct: 330 KQNPIPWINTWLTSD 344


>gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           quintana str. Toulouse]
 gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str.
           Toulouse]
          Length = 324

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTVRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L+  +                + L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA--------------SDPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLNESKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  S  +L +   +E  Y  +      +       + ++ + AN+    +G EPLF 
Sbjct: 221 QEIKDFSFNLLFDLYNIECKYTEDLYDALGL---TEDVKVFLHYNANKALMNLGFEPLFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP    +      +  +FF    + Y   +      D
Sbjct: 278 PEVCRVNPAILAALSPSSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           E33L]
 gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           E33L]
 gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis]
 gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 322

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W+       N W+P ++P+ +D+  W +   L   E+LM  R     
Sbjct: 15  NWNKIIDEKDQEVWD---RLTGNFWLPEKIPLSNDIQSWNT---LKPHEQLMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L   +   E F 
Sbjct: 69  TLLDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L Y +                +  +   V   + E   FY+GF  
Sbjct: 129 WSEENPYLQKKAQIVLDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q           E    + ++L +
Sbjct: 174 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQQAVKRASAERQAELMDYTYSLLED 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +          + ++++ AN+    +G E LF   +   NP    +
Sbjct: 234 LYENEEGYTESLYDE---MGLTEDVKMFLRYNANKALMNLGYEALFPADQTAVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323


>gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 320

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNTRERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L  +  + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++               + L       V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp.
           1-1C]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 122/338 (36%), Gaps = 29/338 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TKITTKNPVVCAVNWNRLYDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L++ +                E L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENTYLQKKARLILEHYEA--------------DEPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 FLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF 
Sbjct: 221 QEIKDFAFNLLFDLYNIECKYTEDLYDAIGL---TEDVKVFLHYNANKALMNLGFEALFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                 NP    +   +  +  +FF    + Y  G  +
Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus
           asymbiotica]
          Length = 319

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 125/336 (37%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N+L   K    W        N W+P +VP+ +D+  W +   LT +E+ +  R  
Sbjct: 7   CAINWNRLKDDKDLEVWN---RLTTNFWLPEKVPLSNDIPSWNT---LTAEEKKLTIRVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144
                 +++       A+      P     +   +F EAVH+ ++  I ++L L  D  +
Sbjct: 61  TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDD 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +       ++  KA   L Y                D   L+      V  E   FY+G
Sbjct: 121 AYYWSENNLALQNKAKIILNYY--------------CDSHPLKKKV-ASVFLESFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      Q   + P+   KE +  + ++
Sbjct: 166 FYLPMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321
           L +    EI Y  +      VG      ++++ + AN+    +G E LF       +P  
Sbjct: 226 LFDLYENEIKYTEDLY--DIVGWT-EDVKKFLHYNANKALMNLGYEALFLSEMTDVSPAI 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +      +  +FF    + Y  G  +      WD
Sbjct: 283 LSALSPGANENHDFFSGSGSSYVIGKAVNTEDEDWD 318


>gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 329

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  WK+   LT+ E+    R     
Sbjct: 20  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLLPDAVTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y Q              D    + +     + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIVMSYYQ-------------GDNPLKKKV--ASTLLESFLFYSGFFL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E +  +  +L++
Sbjct: 179 PMHFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQGYQKLSEPEQEEMKGYAFDLLYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETTDDDWD 328


>gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 359

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L D E+ +   NL +    +S+  
Sbjct: 16  KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++      +F+       I+ 
Sbjct: 73  RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 132

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+   +Y   L +       +  G  + +           ++ L    +   + E + F
Sbjct: 133 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N ++   ++P +     + 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + ++  M  +A   E  +A      G  +GLN     QY+++I N R   IG    FK  
Sbjct: 253 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNN 312

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 313 SNPIPWINSWL 323


>gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
 gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
          Length = 387

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 138/362 (38%), Gaps = 27/362 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +   EK               V +    KY              W P EV +Q D + + 
Sbjct: 14  VFNKEKVDTKKQPMFFGQPLGVQRYDSYKYPVFDRLTQQQLGYFWRPEEVSLQKDRSDYA 73

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT++++ +   NL +    +S+      +A   + S PE    +    F E +HS 
Sbjct: 74  Q---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSR 130

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT----------- 178
           ++ +II ++  +  ++F+   E   +  +A+   +        +   G            
Sbjct: 131 SYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHAQEYGNGTMWELAKEGH 190

Query: 179 ------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                 +   +  L        + EG+ FY  FA   + G    M G A+    I RDE+
Sbjct: 191 VAGQYDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDEN 250

Query: 233 LHLNFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
            HL    +++N+ +  ++P +    KE +     M       E  +A      G  +GLN
Sbjct: 251 QHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEEKRWADYLFKDGSMIGLN 310

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345
                 Y+++IANRR   IGL+P++      NP PW    ++ K ++N   ET +  Y  
Sbjct: 311 DRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVV 370

Query: 346 GA 347
           G 
Sbjct: 371 GG 372


>gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
 gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++      +F+       I+ 
Sbjct: 90  RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+    Y   L +       +  G  D +           ++ L    +   + E + F
Sbjct: 150 RADAVTTYYDDLINSVSLYNLYGEGKHDINGETVVVNLFELKKKLYLAMMSVNILEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N ++   ++P +     + 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++  M  +A   E  +A      G  +GLN     QY+++I N R   IGL   F   
Sbjct: 270 REEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFDNN 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR
           15-3]
          Length = 324

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 123/338 (36%), Gaps = 29/338 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TKITTKNPVVCAINWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L++ +                E L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENTYLQKKARLILEHYEA--------------NEPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLHEAKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF 
Sbjct: 221 QEIKDFAFNILFDLYNIECKYTEDLYDAIGL---TEDVKVFLHYNANKALMNLGFEALFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                 NP    +   +  +  +FF    + Y  G  +
Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 240

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 26/255 (10%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        + P+KY   W  Y +A  + W   E+ +  D A W+    LTD ER
Sbjct: 9   SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 65

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  +I +  
Sbjct: 66  FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 125

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+   +   I  KA+WAL++    +SP                  + +   
Sbjct: 126 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP-------------FPVRLIAFAAV 172

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   FA I  L +   M G+    + I RDE LH +F   +   IK        K 
Sbjct: 173 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKP 225

Query: 257 FQQKSRTMLHEATLL 271
            Q++   ++ EA  L
Sbjct: 226 SQEQVYEIIKEAVSL 240


>gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
 gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
          Length = 377

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 28/314 (8%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P EV +  D   +   N L D E+ +   NL +    +S+   +
Sbjct: 35  EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +II ++  +   +F+   E   I  +A
Sbjct: 92  PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVKRA 151

Query: 160 NWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
               +Y   L + +                 FT   ++  ++    L       E + FY
Sbjct: 152 GDISKYYDDLITVTNDYNRFGEGNHSANGIPFTVSLRELKKKLYLCLMSVNA-LEAIRFY 210

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQ 258
             FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E +
Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMVEIATECE 270

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-T 316
           Q    +   A   E  +A      G  +GLN     QY+++I N R   +GL P ++  T
Sbjct: 271 QDCFDLFKAAAEQEKEWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYEGAT 330

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW++  +   
Sbjct: 331 QNPIPWINSWLSSD 344


>gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus
           denitrificans PD1222]
 gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Paracoccus denitrificans PD1222]
          Length = 329

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 121/347 (34%), Gaps = 34/347 (9%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R+     R      + N+L   K    W        N W+P +VP+ +D+  W +   L 
Sbjct: 6   RMKDHAMRTPVRAINWNRLEDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LR 59

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER +  R        +++       A+      P     L   AF EAVH+ ++  I 
Sbjct: 60  PEERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIF 119

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++L L       F    E P +  KA   L+  +  S P                  +  
Sbjct: 120 STLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDP--------------LKRKIAS 165

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +         
Sbjct: 166 VFLESFMFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAE 225

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +  + +++ +   +E  Y  E      +       + ++ + AN+    +G E LF
Sbjct: 226 RAALKDFAFSLIFDLYDIEAKYTAELYDGIGL---TEDVKSFLHYNANKALQNLGYEALF 282

Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                  NP    +   D +   +FF    + Y  G  +      WD
Sbjct: 283 PPQACEVNPAILAALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 322

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 130/309 (42%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AYA E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 323

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNRIQDDKDLEVWN---RLTTNFWLPEKVPLSNDINSWNT---LTATEKKLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D  E + 
Sbjct: 68  TLLDTIQNTVGAPCLMADAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D   L+      V  E   FY+GF  
Sbjct: 128 WSEENSALQNKAKIILSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E ++ + ++L +
Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLATYNEQQQNEIKEFTFSLLFD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  E      VG +    + ++ + AN+    +G E LF       +P    +
Sbjct: 233 LYENEIKYTQELY--DSVGWS-EDVKSFLHYNANKALMNLGYEALFPEAITQVSPEILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              D  +  +FF    + Y   +    + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319


>gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
          Length = 323

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 130/333 (39%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W   + LTD+ERL+  R     
Sbjct: 14  NWNRIQDEKDVEVWN---RLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 68  TLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             RE  ++ AKA   ++                 D +      +   + E   FY+GF  
Sbjct: 128 WSRENRNLQAKARLIVERY---------------DGQDPYKKKIASTLLESFLFYSGFYW 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    ++   A+  + I+RDE++H  +      +     P    +E +  +  +L E
Sbjct: 173 PMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTFELLFE 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y H+      +   A   ++++ + AN+    +G EP+F       NP    +
Sbjct: 233 LYENEVEYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 290 LSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322


>gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus]
          Length = 384

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P KY WA +  +     HW+ TEV ++DD+  WKS   LT  E+  I   L  F   
Sbjct: 73  CFKPFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQL 131

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E ++ +   
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++      +                 L       V+ EG+  +  F  +L+  
Sbjct: 191 KEMTDKLDFMKSMDVSTI-------------PNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +  +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE
Sbjct: 238 KRGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVID 328
            A+            GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 358 GADLTNFFENHVTEYETGG 376


>gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           frigidimarina NCIMB 400]
 gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 376

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GNLPEHEQHIFLSNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  +   +F+   +   I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSLVFDDIVQNDEILK 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L + +        GT   +           ++ L    +     E + F
Sbjct: 150 RAGDIAAYYDDLINLTQINNLLGEGTHIINGKEITVNSRILKKSLYLCMMSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERRVMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMGEIAAEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q++  +  +A   E  +A      G  +GLN     QY++FI N+R   + L   +   
Sbjct: 270 KQEAYDLFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVHLPQPYDEQ 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM   ++  
Sbjct: 330 SNPLPWMKNWLESD 343


>gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Ames]
 gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Sterne]
 gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis
           str. A2012]
 gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis str. Al Hakam]
 gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. A1055]
 gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Kruger B]
 gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Vollum]
 gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Australia 94]
 gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis CI]
 gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Ames]
 gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Sterne]
 gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus
           anthracis]
 gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bacillus thuringiensis str. Al Hakam]
 gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus]
 gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 322

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 376

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 123/314 (39%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    L++ E+ +   NL +    +S+  
Sbjct: 33  KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   +    +F E +HS ++ +I+ +L  D   +F    E   I  
Sbjct: 90  RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFADIVENEQIKK 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDADQE-----------FLQDLFVFYVVFEGMWF 201
           +A    +Y   L        +   GT + + E            L          E + F
Sbjct: 150 RAADISKYYDDLIFYTQLWQTLGEGTHNINGEEHVVTMRSLKVKLFLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G ++  + I RDE+LHL     ++N                E+
Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNLWAKGKDDPEMAEIAIEY 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q++  +  +A   E  +A      G  +GLN     QY++FIAN R   IGL   F   
Sbjct: 270 KQQATDIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLGQPFDIK 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 NNPLPWMNNYLNSD 343


>gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
 gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
          Length = 323

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 130/333 (39%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W   + LTD+ERL+  R     
Sbjct: 14  NWNRIQDEKDVEVWN---RLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 68  TLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             RE  ++ AKA   ++                 D +      +   + E   FY+GF  
Sbjct: 128 WSRENRNLQAKAGLIVERY---------------DGQDPYKKKIASTLLESFLFYSGFYW 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    ++   A+  + I+RDE++H  +      +     P    +E +  +  +L E
Sbjct: 173 PMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTFELLFE 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y H+      +   A   ++++ + AN+    +G EP+F       NP    +
Sbjct: 233 LYENEVEYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 290 LSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322


>gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWMDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 376

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L D E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++      +F+       I+ 
Sbjct: 90  RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+   +Y   L +       +  G  + +           ++ L    +   + E + F
Sbjct: 150 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKTVIINLFELKKKLYLAMMSVNILEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N ++   ++P +     + 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + ++  M  +A   E  +A      G  +GLN     QY+++I N R   IGL   F+  
Sbjct: 270 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENN 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
 gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
          Length = 380

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 24/339 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + +K   + +        +V +    KY    +      +  W P EV +  D   + 
Sbjct: 9   IFSQKKNNQLLEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVARDRIDY- 67

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS 
Sbjct: 68  --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD---- 180
           ++ +II ++  D   +F+   E   I  +A     Y  TL   +     F  GT      
Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTFEGK 185

Query: 181 -------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                  A ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 186 EITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 245

Query: 234 HLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++             E +++   +  +A   E  +A     +G  +GLN
Sbjct: 246 HLTGTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEKEWAEYLFSEGSMIGLN 305

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
                QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 306 KDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344


>gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 323

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNIIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P         +F EAVH+ ++  I ++L    D  + + 
Sbjct: 68  TLLDTIQNTVGAPALIADAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTPDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + ++               + L       V  E   FY+GF  
Sbjct: 128 WSEENRALQKKASIILAHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAARRQQVKNFAFDLLQD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y  E      VG      + ++ + AN+    +G E LF  +    NP    +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 322


>gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
 gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
          Length = 323

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P ++P+ +D   W +   L  DE+ +  R     
Sbjct: 14  NWNRIQDDKDLEVWN---RLTSNFWLPEKIPLSNDTVSWNT---LKTDEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D  E + 
Sbjct: 68  TLLDTIQNTVGAPCLMEDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D   L+      V  E   FY+GF  
Sbjct: 128 WSEENTALQNKAKIILSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  + ++L +
Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKALAHYSEQERNEIKDFTFSLLLD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  E      VG +    + ++ + AN+    +G E LF  +    +P    +
Sbjct: 233 LYENEIKYTQELYDG--VGWS-EDVKSFLHYNANKALMNLGYEALFPDSITQVSPEILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              D  +  +FF    + Y   +    + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319


>gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 329

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYY---------------KGDDPLKKKVASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  +L++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp.
           HTCC2999]
          Length = 376

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++   GL+D E+ +   NL +    +S+  
Sbjct: 33  KHAIFEKLIEKQISFFWRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +I+ +L  D   +F    E   I  
Sbjct: 90  RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKR 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L        +   GT + +           ++ L          E + F
Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGTHEVNGETHIINMRELKKKLYLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257
           Y  FA   +      M G ++  + I RDE+LHL     V+N      ++P +    KE 
Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLIARDENLHLTSTQHVLNLWAKGKDDPEMAEIAKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q++R +   A   E  +A      G  +GLN      Y+++IAN+R   IGL   F  +
Sbjct: 270 EQEARDIFLNAVQQEKEWAAFLFNNGSMIGLNEEILCSYVEYIANQRMAAIGLGQPFDVS 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 SNPLPWMNNYLNSD 343


>gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
 gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
          Length = 324

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   L  +E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGSVRLMADSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++                 D      + V  V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMREY---------------DSGNPLKMKVASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALERLGEAEKQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +       +Q++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTQDLYDGVGL---TEDVKQFLHYNANKALMNLGYEALFPPEACRVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 343

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+P E+PM  D + +     
Sbjct: 9   TEAPNRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PV 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+G  A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 66  LDAEEQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++SL  D+   E+F  ++  P +  +         T  S  +     + + +      V
Sbjct: 125 VLSSLVSDQEQKEIFEYWKNDPVLLER--------NTFISDIYQEFRDEQNPQTFFQAMV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q+  + P 
Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLSDFPE 236

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L TKE       M++ A  LE  +AH T+ K   G++      Y++++AN R   +G++ 
Sbjct: 237 LNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRLRLLGMDK 295

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            ++  + N  PW+    D      + +FFE +   Y +  +
Sbjct: 296 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336


>gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
 gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
          Length = 324

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LTD
Sbjct: 2   TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWSS---LTD 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L+  +                + L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA--------------NDPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           KE +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF 
Sbjct: 221 KEIKDFAFNLLFDLYNIECKYTEDLYDALGL---TEDVKIFLHYNANKALMNLGFEALFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP    +   +  +  +FF    + Y   +      D
Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 320

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L  +  + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  K++  L + ++               + L       V  E   FY+GF   + 
Sbjct: 128 ENTALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 329

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYY---------------KGDDPLKKKVASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  ++++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
 gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 33  KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPEHEKHIFLSNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++      +F+       I+ 
Sbjct: 90  RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQSPELIFDDIVSNDKISE 149

Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+    Y   L +       +  G  + +           ++ L    +   + E + F
Sbjct: 150 RADAVTTYYDDLINSVSLYNLYGEGKHEINGKTVVVNLFELKKKLYLAMMSVNILEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N ++   ++P +     + 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + ++  M  +A   E  +A      G  +GLN     QY+++I N R   IGL   F+  
Sbjct: 270 RDEAIKMFVQAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENN 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 388

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 28/336 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
            ++              W P EV +Q D A +     LTD ++ +   NL +    +S+ 
Sbjct: 41  YRFPTFDRLTQQQLGYFWRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQ 97

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                +A   + S PE    +    F E +HS ++ YII ++  D  ELF+      +I 
Sbjct: 98  GRAPGMAFIPYCSLPELEGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNIL 157

Query: 157 AKANWALQYTQTLSSPSFT-----------------TGTKDADQEFLQDLFVFYVVFEGM 199
           ++A    +      + +                     T+   +++L        + EG+
Sbjct: 158 SRAESVTKSYDDFINYAHEYDQSNAWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGI 217

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTK 255
            FY  FA   + G    M G A+    I RDES HL     ++       ++P +    +
Sbjct: 218 RFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQQILKNWTEGKDDPEMKEIAE 277

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF- 313
           E Q+    M       E A+A+    +G  +GLN      Y+++IANRR   IGL+P++ 
Sbjct: 278 EEQETVEQMFKACVDEEKAWANYLFKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYD 337

Query: 314 -KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
                NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 338 QPLRNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 373


>gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 320

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L  +  + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  K++  L + ++               + L       V  E   FY+GF   + 
Sbjct: 128 ENTALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKVDSARHQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF  +    NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 384

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 27/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L + E+ +   NL +    +S+  
Sbjct: 40  KYEVFEKLIEKQISFFWRPEEVDLSRDRMDYA---KLPEHEKHIFISNLKYQTLLDSIQG 96

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 97  RSPNVALLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156

Query: 158 KANWALQYT-----------------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y                    +++   T   ++  ++    L    V  E + 
Sbjct: 157 RAEDIACYYNDLIEYTQYFNLLGEGKHLINNKEITISLRELKKKLYLCLMCVNV-LEAIR 215

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E
Sbjct: 216 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRNGTDDPEMAEIAAE 275

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +   +  +A   E  +A      G  +GLN     QY+++I N R   +GL   F  
Sbjct: 276 LHDECVALFKKAAAQEKEWAAYLFKDGSMIGLNKDILGQYVEYITNLRMSAVGLPQAFPK 335

Query: 316 T-ENPFPWMSEVIDLK 330
             +NP PW++  +   
Sbjct: 336 ALQNPIPWINAWLSSD 351


>gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 376

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            + +    +++        +V++    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSRKHNNQMEEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182
           + +II ++      +F+       I+ +A+   +Y   L +       +  G  + +   
Sbjct: 123 YTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKS 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +   + E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L+    ++N ++   ++P +     + + ++  M  +A   E  +A      G  +GLN 
Sbjct: 243 LSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   IG    FK   NP PW++  +
Sbjct: 303 HILCQYVEYITNARMTAIGFPAQFKNNSNPIPWINSWL 340


>gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           henselae str. Houston-1]
 gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str.
           Houston-1]
          Length = 324

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L+  +                + L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEG--------------NDPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDETKK 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           KE +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF 
Sbjct: 221 KEVKDFAFNLLFDLYNIECKYTEDLYDALGL---TEDVKIFLHYNANKALMNLGFEALFP 277

Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP    +   +  +  +FF    + Y   +      D
Sbjct: 278 SEVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++ Y  NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
 gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi]
 gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
          Length = 322

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1]
 gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1]
          Length = 346

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 19/323 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S +     ++Y   +  Y    +N W+P  + + +D+  + +    T +        +G 
Sbjct: 27  SGIMNWNDIRYPQMYTIYKQIRSNFWIPQRISLVEDVRQFPNLPKRTQE---AYLDVIGQ 83

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGEL 145
            ++ +S+    +VL   R LS P  +      A +EA H  ++ Y+++S+  D   + E+
Sbjct: 84  LSTLDSIQ-TRLVLEFGRFLSEPTYQPIAANIAQQEATHEESYSYVLSSVVPDTNKQNEV 142

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           F+  +    +  + +   +Y Q            +   +      V  VV EG++FY+ F
Sbjct: 143 FDKAKTNEDVLKRNDRVYKYYQ--------EFVDNPTPQTFFRALVACVVLEGIYFYSAF 194

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
               +L R + MVG +    YI RDE  H  F   V+  +  E P L T+E       M+
Sbjct: 195 TFFYNLARNHLMVGTSTMINYIQRDEVAHAYFFSQVLRYLMAERPELHTEENVNFIYDMM 254

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM-- 323
            EA  LEI Y+ + +     GL+    E Y++ + NRR   +GL+ ++   EN  PWM  
Sbjct: 255 QEAADLEIEYSQKILHD-IPGLDLEELEGYIKSLCNRRLRGVGLDDIYAGVENSMPWMIA 313

Query: 324 -SEVIDLKKEKNFFETRVTEYQQ 345
             +  + + + + FE +   Y++
Sbjct: 314 FDDGSNNQTKSDMFEQKSRNYKK 336


>gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3]
          Length = 306

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           G++F   FA I  L +   M G+    + I RDE LH +F   +   +K +
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290


>gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 322

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E+   KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQTTYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ N + +  L      E VH+ ++ +I T+L  +E   E+F+   + P +  KA   
Sbjct: 74  LVHIENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T       ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRKLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      ++ Q++++ +L E   +E AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIYAS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VGEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium
           ammoniagenes]
          Length = 329

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 20  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++   +            AF E+VH+ ++  I  +L       E F 
Sbjct: 74  TLLDTIQGTVGAISLLPDVETMHEEGVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                D    + +     + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
 gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
          Length = 322

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P  T       ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TRYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
 gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
          Length = 322

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
 gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
          Length = 325

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  WK+   LT +E+ +  R     
Sbjct: 16  NWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++                AF E+VH+ ++  I ++L    +  + F 
Sbjct: 70  TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 130 WASENEHLQKKAKIILAYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E ++ +  +L+E
Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESPERQAELKEYTFNLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326
               E+AY H       VG +    ++++ + AN+    +G E +F  +  N  P +   
Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEAMFPASVTNVSPAILSA 291

Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           linens BL2]
          Length = 326

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 121/315 (38%), Gaps = 31/315 (9%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
               N W+P +VP+ +D+  W +   LT++E+ +  R        +++      +++   
Sbjct: 32  RLTGNFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPD 88

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQY 165
              P     +   AF E+VH+ ++  I ++L    +  E F   RE   + +KA+  L Y
Sbjct: 89  AVTPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSY 148

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +                +      V   + E   FY+GF   +      K+   A+  +
Sbjct: 149 YR---------------GDDPLKRKVASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIR 193

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+RDE++H  +      +          +E +  +  ++ E    E+AY H+      +
Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLYDSVGL 253

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTE 342
              A  C+ ++ + AN+    +G E +F       NP    +   +  +  +FF    + 
Sbjct: 254 ---AEDCKMFLHYNANKALMNLGYEAMFPKEVTEVNPAILAALSPNSDENHDFFSGSGSS 310

Query: 343 YQQGAE-----LKWD 352
           Y  G         WD
Sbjct: 311 YVIGKAENTEDDDWD 325


>gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani]
          Length = 322

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis]
 gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae]
 gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto]
 gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 322

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 376

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 129/311 (41%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   +++   L D E+ +   NL +    +S+  
Sbjct: 33  KHPIFEKLIEKQLSFFWRPEEVDVSKDRVDFEN---LPDHEKHIFLSNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++      +F+   +   I  
Sbjct: 90  RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVTKQPELIFDDIVDNDKIKE 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A+   +Y   L   +     +  G    +           ++ L    +   + E + F
Sbjct: 150 RADEVTRYYDDLIEYTSIYNLYGEGKHQINDQTVVINLFELKKKLYRAIMSVNILEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N ++         +   + 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHMLNIMQDGQDDPEMAIVAAQL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +++S  M   A   E  +A      G  +GLN     QY+++I N R   +GL   F  T
Sbjct: 270 REESIEMFRTAAQQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNVRMSAVGLPQQFSIT 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           B4264]
 gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
 gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus]
 gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus]
 gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus]
 gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           B4264]
 gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
          Length = 322

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 328

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W + N L   E+    R     
Sbjct: 19  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWGTLNDL---EKTTTMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L    +  E F 
Sbjct: 73  TMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       V   + E   FY+GF  
Sbjct: 133 WSEENENLQKKAKIVLSYYE---------------GADPLKRKVASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   E      +E ++ +  +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSA 294

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 295 LSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327


>gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796]
          Length = 306

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           G++F   FA I  L +   M G+    + I RDE LH +F   +   +K +
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290


>gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
 gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
          Length = 384

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P KY WA +  +     HW+ TEV ++DD+  WKS   L+  E+  I   L  F   
Sbjct: 73  CFKPFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQL 131

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E ++ +   
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++      +                 L       V+ EG+  +  F  +L+  
Sbjct: 191 KEMTDKLDFMKSMDVSTI-------------PNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +  +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE
Sbjct: 238 KKGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVID 328
            A+            GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 358 GADLTNFFENHVTEYETGG 376


>gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2]
          Length = 384

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 145/373 (38%), Gaps = 30/373 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA   G++ +   E+               V +    KY              W P EV 
Sbjct: 1   MAEVKGMT-VFNTEEVNTKKQPMFFGKPLGVQRYDNFKYPSFENLTKQQLGYFWRPEEVS 59

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D   +++   L  +++ +   NL +    +S+      +A   + S PE    +   
Sbjct: 60  LQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPELEACMEVW 116

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-- 178
           +F E +HS ++ Y+I ++  D  E+F+       I ++A    +      + +   G   
Sbjct: 117 SFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEAQGWGQSN 176

Query: 179 --KDAD---------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             +D D               +  L        + EG+ FY  FA   + G    M G A
Sbjct: 177 LWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGELKVMEGSA 236

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHE 278
           +    I RDE+ HL    +++N  +  ++P +    KE +Q +  M  +    E  +A  
Sbjct: 237 KIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNEEKMWAEY 296

Query: 279 TMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF 335
               G  +GLN     QY++++ANRR   IG++P++      NP PW    I  K  +  
Sbjct: 297 LFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWISSKGLQVA 356

Query: 336 -FETRVTEYQQGA 347
             ET V  Y  G 
Sbjct: 357 PQETEVESYIVGG 369


>gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 388

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 145/374 (38%), Gaps = 36/374 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD---------VNQLLPLKYGWAWEKYLSACNNHWMPT 57
           ++P     +R+ V +K  ++ +S          V +    KY    +         W P 
Sbjct: 3   VAPSSRKVERMTVFNKSHVDTKSQPMFFGAPLGVQRYDEYKYPVFDKLTTQMLGYFWRPE 62

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +Q D + ++S   L  +++ +   NL +    +S+      +A   + + PE    +
Sbjct: 63  EVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPELEGAM 119

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
               F E +HS ++ YII ++  +  E+F+   +   I  +AN          + +   G
Sbjct: 120 NVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILKRANSVTASYDDFINDAQEYG 179

Query: 178 -----------------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
                            T    +  L        + EG+ FY  FA   + G    M G 
Sbjct: 180 QGRMWEKDWKDSPSSQWTIHELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGS 239

Query: 221 AEQYQYIMRDESLHLNFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAH 277
           A+    I RDE+ HL    +++ N +  ++P +     E +     M   A   E  +A 
Sbjct: 240 AKIISLISRDENQHLVLTQNILKNWMNGDDPEMKQIADEERNNVIGMFRNAVEEEKEWAE 299

Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
                G  +GLN     QY+++IAN+R   +G +P++      NP PW    I  K  + 
Sbjct: 300 YLFSGGSMIGLNDKLLNQYVEWIANKRMKALGFDPIYDQPLRNNPLPWTQHWISSKGLQV 359

Query: 335 F-FETRVTEYQQGA 347
              ET V  Y  G 
Sbjct: 360 APQETEVESYVVGG 373


>gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 319

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  + ++L    D    +    
Sbjct: 67  DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KA+  L+Y +                E L+      V  E   FY+GF   + 
Sbjct: 127 ESASLQRKADLVLEYYRA--------------DEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSAEKREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E++Y  E       G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELSYTEELYAG--TGW-EEDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETQDEDWD 318


>gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
 gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
          Length = 322

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
 gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
          Length = 322

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas atlantica T6c]
 gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 376

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 122/314 (38%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    L++ E+ +   NL +    +S+  
Sbjct: 33  KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   +    +F E +HS ++ +I+ +L  D   +F+   E   I  
Sbjct: 90  RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFSDIVENEQIKK 149

Query: 158 KANWALQYTQTL----------------SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L                 +      T    +  L          E + F
Sbjct: 150 RAADISKYYDDLIFYTQLWQTLGEGTHTINGEEHVVTMRTLKIKLFLCMNSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257
           Y  FA   +      M G ++  + I RDE+LHL     ++N                E+
Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNLWAKGKDDPEMAEIALEY 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++  +  +A   E  +A      G  +GLN     QY++FIAN R   IGL+  F   
Sbjct: 270 KEEATNIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLDQPFDIK 329

Query: 317 ENPFPWMSEVIDLK 330
            NP PWM+  ++  
Sbjct: 330 NNPLPWMNNYLNSD 343


>gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 324

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 118/331 (35%), Gaps = 30/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++      + +      P     L   +F EAVH+ ++  I ++L      + + Y
Sbjct: 69  TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPD-VDDAY 127

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R         N  LQ   TL    +  G     +       V  V  E   FY+GF   +
Sbjct: 128 RWSEE-----NEFLQRKSTLIIEQYRCGDPLKKK-------VASVFLESFLFYSGFYLPM 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 K+   A+  + I+RDE++H  +      +          +E +  +  +L E  
Sbjct: 176 YWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERKQEIKDFAFDLLLELY 235

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y         +       ++++ + AN+    +G E LF       NP    +  
Sbjct: 236 DNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALS 292

Query: 327 IDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +FF    + Y  G  +      WD
Sbjct: 293 PNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
 gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
          Length = 322

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P          ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPQ-------VAKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 333

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 37/354 (10%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P +  E R+    +    +  + N++   K    W       +N W+P +VP+ +D+  W
Sbjct: 6   PARCKENRMTHLTRV---SAINWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAW 59

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L+  E+ +  R        +++       A+      P     L   +F EAVH+
Sbjct: 60  QT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHA 116

Query: 129 HTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++  I ++L    +    F        +  KA   L Y Q                E L
Sbjct: 117 RSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQA--------------DEPL 162

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           +      V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +  
Sbjct: 163 KKKI-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGL 221

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +E +  +  +L +    E+AY+ E   +            ++ + AN+    
Sbjct: 222 EIVSPGKREELKNFALDLLMDLYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMN 278

Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +G E LF       NP    +   +  +  +FF    + Y  G     A+  WD
Sbjct: 279 LGYEALFPAEMAAVNPAILAALSPNADENHDFFSGSGSSYVIGKMEETADDDWD 332


>gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 14579]
 gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
 gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 14579]
 gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis]
 gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni]
 gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis]
 gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
          Length = 322

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 386

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++VN   + M   +   V +    KY              W P EV +Q D A +    
Sbjct: 16  KEKVNTKKQPMFFGQPLGVQRYDTFKYPIFDRLTQQQLGYFWRPEEVSLQKDRADYAQ-- 73

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT ++R +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 74  -LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMNVWEFMEMIHSRSYT 132

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-------------- 178
           YII ++  +  ++F+   +   I  ++    +      + +    T              
Sbjct: 133 YIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHAHQYDTGTMWELAKDGHYTG 192

Query: 179 ---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +   +  L        + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 193 QYDRRELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKILSLIARDESQHL 252

Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +++   +  ++P +     +++     M  +    E A+A      G  +GLN   
Sbjct: 253 VITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEEKAWAEYLFKDGSMIGLNDRL 312

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
             QY+++IANRR   IGL+P++      NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 313 LSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNSKGQQNAPQETEIESYVIGG 371


>gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia
           psychrerythraea 34H]
 gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea
           34H]
          Length = 376

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/346 (24%), Positives = 143/346 (41%), Gaps = 37/346 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G   VNV       +R D       +Y    +      +  W P EV + 
Sbjct: 11  NNALLEPMFLGNS-VNV-------SRYDQQ-----RYIAFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D A W+S   LTD E+ +   NL +    +S+ A ++   +   +S PE   ++   AF
Sbjct: 58  KDRADWQS---LTDSEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----SPSFTTG 177
            E +HS ++ +I+ +L  + GE+F+     P+I  +A+   ++   +        S   G
Sbjct: 115 SETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILKRASSIAKFFDDVILTTQLLQSQGEG 174

Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           T + +           +E L          E + FY  FA   +      + G A+  + 
Sbjct: 175 TYEVEGKTVEVSTRKLKERLFLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKIIKL 234

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIAYAHETMPK 282
           I RDE+LHL     ++N  +        K   ++ R     +  +    E  +A      
Sbjct: 235 IARDEALHLTGTQHILNNWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEKEWAQYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           G  +GLNA    QY+++I+N+R   IG    F    NP PWM+  +
Sbjct: 295 GSMIGLNADILNQYIEYISNQRLTAIGFGAPFDIKSNPLPWMNAYL 340


>gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti]
 gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota]
 gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis]
 gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus]
 gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae]
 gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 322

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
              + + +   E R +   Q   E + S  +  ++ +   D  E    F+    VP +  
Sbjct: 1   AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                  E   +  V +   EG++F   F  I  L +   M
Sbjct: 61  KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F   + + ++        K  +++ + ++ +A  +E  +  
Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
           + +P   VG+N     QY++F+A+R    +G   ++ Y  NPF  M E+I L+ + NFFE
Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFE 217

Query: 338 TRVTEY 343
            RV EY
Sbjct: 218 KRVGEY 223


>gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
 gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
          Length = 324

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 15  NWNRIQDDKDLEVWN---RLVNNFWLPEKVPLSNDIQSWNT---LTPEEQTLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L    +  E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + Y +                +      V   + E   FY+GF  
Sbjct: 129 WSTENEFLQKKARIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           + +  + ++L+E
Sbjct: 174 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVDQARRDDIKDYTFSLLYE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E +F  +    NP    +
Sbjct: 234 LYDNEVGYTQSLYDAVGLS---EDVKKFLHYNANKALMNLGYEAMFPSSVTNVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAEATEDD 320


>gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
          Length = 330

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W + N L   E+    R     
Sbjct: 21  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWSTLNEL---EKQTTMRVFTGL 74

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++            L   AF E+VH+ ++  I  +L    +  E F 
Sbjct: 75  TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D        V   + E   FY+GF  
Sbjct: 135 WSEENENLQKKAKIILTYY---------------DGADPLKRKVASTLLESFLFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E ++ +  +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EIAY  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329


>gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
 gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
          Length = 322

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 34/344 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +D  + +    + N+L   K    W+       N W+P ++P+ +D+  W +   L  +E
Sbjct: 2   LDRGKHVFEAINWNKLEDDKDLEVWD---RLTGNFWLPEKIPLSNDIPSWNT---LRPEE 55

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + M  +        ++L      +++      P     L   AF E+VH+ ++  I ++L
Sbjct: 56  QDMTNKVFTNLTLLDTLQGTVGAISLISDARTPHEEAVLTNIAFMESVHARSYSSIFSTL 115

Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
              +   E+F    E   +  KA     Y               AD    + +     + 
Sbjct: 116 LSTQEINEVFRWSEENEQVQRKAEIVNSYY-------------VADDPLKKKV--ASTML 160

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           E   FY+GF   +      K+   A+  + I+RDE++H  +          E+     +E
Sbjct: 161 ESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLGVRESSEARQQE 220

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +  +  +L+E    E  +  +      +       ++++++ AN+    +G E LF   
Sbjct: 221 LKDYTFDLLYELYDNEEQFTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPAE 277

Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
               NP    S   +  +  +FF    + Y  G      +  WD
Sbjct: 278 SCDVNPAILASLSPNADENHDFFSGSGSSYVIGDIEDTQDEDWD 321


>gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 330

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W + N L   E+    R     
Sbjct: 21  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWSTLNDL---EKQTTMRVFTGL 74

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++            L   AF E+VH+ ++  I  +L    +  E F 
Sbjct: 75  TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D        V   + E   FY+GF  
Sbjct: 135 WSEENENLQKKAKIILTYY---------------DGADPLKRKVASTLLESFLFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E ++ +  +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EIAY  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329


>gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes]
          Length = 329

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 20  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       E F 
Sbjct: 74  TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                D    + +     + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter
           turicensis z3032]
          Length = 320

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 11  NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 65  TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +              D + L+      V  E   FY+GF  
Sbjct: 125 WSEENAPLQRKAQIILAHYR--------------DDDPLKKKI-ASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +  +  +  ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQGLAQVDDARRESLKTFALDLMME 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+AY         VG        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                 +  +FF    + Y  G  +      WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDADWD 319


>gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CNPAF512]
          Length = 324

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++                   + L+      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQY--------------GSGDPLKKKV-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 397

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 142/359 (39%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            ++VN   + M   +   V +    KY    +         W P EV +Q D   +++  
Sbjct: 27  TEQVNTKKQPMFFGKPLGVQRYDSYKYPVFDKLTTQQLGYFWRPEEVSLQKDRGDYQT-- 84

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  +++ +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 85  -LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPELEACMEVWGFMEMIHSRSYT 143

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF------- 185
           YII ++  D  E+F+       I  +A+            +   GT +  QE        
Sbjct: 144 YIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSAQQWGTGNMWQEDFRQSPSS 203

Query: 186 ----------LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                     L        + EG+ FY  FA   + G    M G A+    I RDE+ HL
Sbjct: 204 QWEIKDVKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKIISLIARDENQHL 263

Query: 236 NFGIDVIN-QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +++N   + ++P +    KE ++ +      A   E  +A      G  +GLN   
Sbjct: 264 AITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEEKRWADYLFKDGSMIGLNDKL 323

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
            +QY++++ANRR   IGL+P +    + NP PW    I  K  +    ET V  Y  G 
Sbjct: 324 LQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISSKGLQVAPQETEVESYVVGG 382


>gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 322

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L +DE+ M  R        
Sbjct: 13  NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      +++      P         AF E+VH+ ++  + ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  L Y     S                   V   + E   FY+GF   + 
Sbjct: 130 ENEYLQKKAHIVLDYYHGNDSE---------------KRKVASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         +       ++++++ AN+    +G E LF   +   NP    +   
Sbjct: 235 NEELYTETLYDPLGL---TEDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
              +  +FF    + Y  G  
Sbjct: 292 AADENHDFFSGSGSSYAIGTA 312


>gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
 gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
          Length = 322

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E+++ KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIVYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T       ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
 gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
          Length = 322

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F    + P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 332

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W++   L D E+    R     
Sbjct: 23  NWNTIPDDKDLEVWD---RLTGNFWLPEKVPVSNDIPSWRT---LNDYEKTATMRVFTGL 76

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 77  TLLDTIQGTVGAVSLLPDAKTMHEEAVYTNIAFMESVHAKSYSNIFMTLADTPAINDAFR 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  S+  KA   L Y              + D    + +     + E   FY+GF  
Sbjct: 137 WSEENESLQRKAKIILSYY-------------EGDNPHKKKV--ASTLLESFLFYSGFYL 181

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      + + +       E +  +  +L++
Sbjct: 182 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQRGQADLSQAERDELKDYTFNLLYD 241

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 242 LYENETQYTEDIY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPQDETKVSPAILAS 298

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 299 LSPNADENHDFFSGSGSSYVIGKAEDTQDDDWD 331


>gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai]
 gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri]
 gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana]
 gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis]
          Length = 322

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 322

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L +DE+ M  R        
Sbjct: 13  NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  + ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  L Y                     +   V   + E   FY+GF   + 
Sbjct: 130 ENEYLQKKAHIVLDYYH---------------GNDPEKRKVASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         +       ++++++ AN+    +G E LF   +   NP    +   
Sbjct: 235 NEELYTETLYDPLGL---TEDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
              +  +FF    + Y  G  
Sbjct: 292 AADENHDFFSGSGSSYAIGTA 312


>gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
 gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
          Length = 329

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    WE       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNNIPDDKDLEVWE---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                D    + +     + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E +  +  +  E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328


>gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 395

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 142/359 (39%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +  V+   + M   +   + +    KY    +         W P EV +Q D + +K+  
Sbjct: 25  KNHVDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT-- 82

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT +++ +   NL +    +S+      +A   + S PE    +      E +HS ++ 
Sbjct: 83  -LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT---------------G 177
           YII ++  D  E+F+   +   I ++A         L +                    G
Sbjct: 142 YIIKNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAEHEFDSGNAWKFAAEGHPAG 201

Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           T D    +  L    +   + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 202 TYDRKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHL 261

Query: 236 NFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
                +I + +  +        +E +     M   A   E A+A      G  +GLN   
Sbjct: 262 VLTQQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEEKAWASYLFKNGSMIGLNEKL 321

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
             QY++F ANRR   IGL+P++  +   NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 322 LGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQNAPQETEIESYVIGG 380


>gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
 gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
          Length = 322

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P  T       ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TRYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
 gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
          Length = 319

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 10  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++        +      P         +F EAVH+ ++  I ++L    D  + + 
Sbjct: 64  TLLDTIQNTVGAPTLIDDAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYR 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + ++             D   L+ +    V  E   FY+GF  
Sbjct: 124 WSEENRALQKKADIILAHYRS-------------DDPLLKKV--ASVFLESFLFYSGFYL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 169 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEQVSATRRQQVKSFAFDLLQD 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y  E      VG      + ++ + AN+    +G E LF  +    NP    +
Sbjct: 229 LYDNEVRYTEELYDD--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  + 
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVN 311


>gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
 gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
          Length = 322

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter sp. 638]
          Length = 319

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++  +    A+      P     +   +F EAVH+ ++  I ++L    D    ++   
Sbjct: 67  DTIQNSVGAPALMGDSLTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
              S+  KA   L+Y                  + L+      V  E   FY+GF   + 
Sbjct: 127 ASTSLQRKAQLVLEYYHA--------------DDPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKISEAKREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E++Y  E              + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELSYTEELYAGTSWET---DVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDADWD 318


>gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 338

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 125/354 (35%), Gaps = 34/354 (9%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P     +  N + +    A  D N +   K    W+       N W+P +VP+ +D+  W
Sbjct: 8   PSTPAHREKNPESRACPVAAIDWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSW 64

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            + N L   E+    R        +++      +++      P         AF E+VH+
Sbjct: 65  NTLNAL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHA 121

Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++  I  +L       + F    E   +  KA   L Y              + D    
Sbjct: 122 KSYSSIFQTLASTPEIQDAFRWGEENEYLQKKAKIILDYY-------------EGDNPQK 168

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + +     + E   FY+GF   +      K+   A+  + I+RDE++H  +      +  
Sbjct: 169 KKV--ASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRNL 226

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                    E +  +  ++ +    EI Y  E   +  +G      ++++++  N+  + 
Sbjct: 227 ERLTQAERDELKDYTFDLMFDLYDNEIQYTEEMYDE--LGWT-EDVKRFLRYNGNKALNN 283

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
           +G E +F   E   +P    +   +  +  +FF    + Y  G         WD
Sbjct: 284 LGYEGMFPADETRVSPSILSALSPNADENHDFFSGSGSSYVMGKAEVTQDEDWD 337


>gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
 gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
          Length = 325

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  WK+   LT +E+ +  R     
Sbjct: 16  NWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++                AF E+VH+ ++  I ++L    +  + F 
Sbjct: 70  TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L Y                  +      V   + E   FY+GF  
Sbjct: 130 WASENEHLQKKAKIILAYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E ++ +  +L+E
Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESPERQAELKEYTFNLLYE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326
               E++Y H       VG +    ++++ + AN+    +G E +F  +  N  P +   
Sbjct: 235 LYENEVSYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEAMFPASVTNVSPAILSA 291

Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-003]
          Length = 336

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/315 (22%), Positives = 137/315 (43%), Gaps = 18/315 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + +  
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
               A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   W
Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314

Query: 323 MSEVID--LKKEKNF 335
           +    D   + + +F
Sbjct: 315 IKAYADNFTETKTDF 329


>gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           weihenstephanensis KBAB4]
 gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
 gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
          Length = 322

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 10987]
 gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           ATCC 10987]
          Length = 322

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           amyloliquefaciens DSM 7]
          Length = 327

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L   E+    R L      ++   N  +  I
Sbjct: 24  FYAQNVKQFWLPEEISLNGDLLSWK---ALGPAEQTTYMRGLAGLTLLDTEQGNTGMPII 80

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
            +H++  + +  L   A  E  VH+ ++  I  +L   E   E+F   +  P +  KA  
Sbjct: 81  AKHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKAAL 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                + +         K+ D   L    V  V  E   FY+GF   L      K+    
Sbjct: 141 ITGLYRDI---------KEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLTSSG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E +  +  +L E    E+AY  +   
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDNEVAYTEDLYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKNFFETRV 340
              +       ++++++ AN+    +G +P F +   NP   M+ +    K  +FF  + 
Sbjct: 252 AVGL---THDVKRFLRYNANKALQNLGFDPYFEEERPNPIV-MNGLNTKTKSHDFFSQKG 307

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 308 NGYKKATV 315


>gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
 gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
          Length = 377

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 25/312 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   +   N LT  E+ +   NL +    +S+  
Sbjct: 33  KHSIFEKLIEKQISFFWRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +I+ +L  D  E+F        I  
Sbjct: 90  RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVINDQIKL 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +AN   +Y   L                        T+   ++ L          E + F
Sbjct: 150 RANDISRYYDDLIFYTQLWQTHGEGKITVDGEEHNVTRRELKKKLFLCINSVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE++HL     +IN  +   ++P +    +E 
Sbjct: 210 YVSFACTFAFAERELMEGNAKIIRLIARDENVHLTSTQHMINLWQDGEDDPEMAEIAEEL 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
             ++  +   A   E  +AH     G  +GLN     QY+++IAN R   IG +  F   
Sbjct: 270 ADEAYEIFMTAVKQEKQWAHYLFRDGSMIGLNESMLCQYVEYIANLRMQAIGYDAPFPEQ 329

Query: 316 TENPFPWMSEVI 327
             NP PWM++ +
Sbjct: 330 RSNPLPWMNKYL 341


>gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 332

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L++ E+    R     
Sbjct: 23  NWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGL 76

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       ++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 77  TMLDTIQGTVGATSLIDDAVTPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFR 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + Q              D    + +     + E   FY+GF  
Sbjct: 137 WSEENENLQTKADIVLNFYQ-------------GDDPLKKKV--ASTLLESFLFYSGFYL 181

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  ++ +
Sbjct: 182 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQRALEHETEARRQELKDHTFELVFD 241

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 242 LYDNECQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPSIISA 298

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 299 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 331


>gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           bacilliformis KC583]
 gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella
           bacilliformis KC583]
          Length = 324

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 121/325 (37%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W+S   LT++E+ +  R     
Sbjct: 15  NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++            L   AF EAVH+ ++  I ++L L  D  + F 
Sbjct: 69  TLLDTVQNTVGAVSLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                + L+         E   FY+GF  
Sbjct: 129 WSEENVYLQKKAKLVLEHYEA--------------NDPLKKKI-ASTFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +      +E +  +  ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGFAKLNEAQKQEMKDFTFNMLFD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
              +E  Y  +      +       + ++ + AN+    +G E LF       NP    +
Sbjct: 234 LYNIECKYTEDLYDSLGL---TEDVKVFLHYNANKALMNLGFESLFPSEVCRVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 319

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP  + +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAIFAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide
           reductase 2) (R2f protein) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 319

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 29/329 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W        N W+P ++P+ +D+  W +   LT +E+ +  R  
Sbjct: 7   CAINWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDITSWNT---LTTEEKKLTIRVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144
                 +++       A+      P     +   +F EAVH+ ++  I ++L L  D  +
Sbjct: 61  TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDD 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +    +  S+  KA   L Y                         +  V  E   FY+G
Sbjct: 121 AYRWSEKSFSLQNKAKIILNYY---------------SYHHPLKKKIASVFLESFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +       +   A+  + I+RDE++H  +      Q   ++  L  KE ++ + ++
Sbjct: 166 FYLPMYWSSRGILTNTADLIRLIIRDEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L E    EI Y  E      VG      ++++ + AN+    +G E LF       +P  
Sbjct: 226 LLELYENEIKYTEELY--DIVGWT-EDIKKFLHYNANKALMNLGYETLFPPEITNVSPTI 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +   +  +  +FF    + Y  G  + 
Sbjct: 283 LSALSPNANENHDFFSGSGSSYVIGKAVN 311


>gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki]
          Length = 322

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E + +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis ATCC 23457]
 gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC
           23457]
 gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M28]
 gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M5-90]
          Length = 329

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 120/344 (34%), Gaps = 35/344 (10%)

Query: 17  VNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +N+  K     R       + N++   K    W        N W+P +VP+ +D+  W++
Sbjct: 1   MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET 57

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +  R        +++      + +      P     L   +F EAVH+ +
Sbjct: 58  ---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARS 114

Query: 131 FQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           +  I ++L L     + +    E   +  K+   L                    + L+ 
Sbjct: 115 YSSIFSTLCLTPDVDDAYRWSEENEFLQRKSTLILDQYHA--------------DDPLKK 160

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +    
Sbjct: 161 KI-ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEV 219

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +E +  +  +L E    E+ Y         +       ++++ + AN+    +G
Sbjct: 220 LSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLG 276

Query: 309 LEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            E LF       NP    +   +  +  +FF    + Y  G  +
Sbjct: 277 YEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 320


>gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
 gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
          Length = 319

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 122/332 (36%), Gaps = 26/332 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M  +R        ++     E +    +N W+P +VP+ +D+  W+S   L   E+ +  
Sbjct: 1   MTLSRVSAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQS---LNAAEQQLTI 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LD 141
           R        +++       ++      P     L   +F EAVH+ ++  I ++L    D
Sbjct: 58  RVFTGLTLLDTIQNIAGAPSLMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTRD 117

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
               +    E   +  KA   L +               A  E L+      V  E   F
Sbjct: 118 VDAAYAWSEENAPLQRKAQIILAHY--------------ASDEPLKKKI-ASVFLESFLF 162

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   +      K+   A+  + I+RDE++H  +      +   + P    ++ +  +
Sbjct: 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGMEKLPDAAREDLKNFA 222

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318
             +L E    E+ Y  E         +A   + ++ + AN+    +G E LF       N
Sbjct: 223 LDLLMELYDNEVRYTEELYAD---TGHAEDVQAFLCYNANKAMMNLGYEALFPAEMAEVN 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P    +   +  +  +FF    + Y  G  ++
Sbjct: 280 PAILAALSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 320

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    +    F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                E L+      V  E   FY+GF  
Sbjct: 125 WSESCDPLQCKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E   +            ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
 gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
          Length = 324

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 118/325 (36%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W S   LT++ER +  R     
Sbjct: 15  NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++            L   AF EAVH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                E L+       + E   FY+GF  
Sbjct: 129 WSEENTYLQKKARLILEHYEA--------------NEPLKKKI-ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +                 +E +  +  ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
              +E  Y         +       + ++ + AN+    +G E LF       NP    +
Sbjct: 234 LYNIECKYTENLYDSIGL---TEDVKVFLHYNANKALMNLGFEALFPPEVCRVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           tribocorum CIP 105476]
 gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           tribocorum CIP 105476]
          Length = 324

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 123/343 (35%), Gaps = 31/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
             +  K  + +  + N+L   K    W        N W+P +VP+ +D+  W S   LT+
Sbjct: 2   TKITTKNPIVSAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWSS---LTE 55

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER +  R        +++      +++            L   AF EAVH+ ++  I +
Sbjct: 56  EERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L    +  + F    E   +  KA   L+  +                + L+       
Sbjct: 116 TLCSTVEVDDAFRWSEENSHLQKKARLVLERYEA--------------NDPLKKKI-AST 160

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +      K+   A+  + I+RDE++H  +          +      
Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGYAKLEEAKR 220

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF 
Sbjct: 221 QEVKDFAFNLLFDLYNIECKYTEDLYDSLGL---TEDVKIFLHYNANKALMNLGFEALFP 277

Query: 315 YT---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP    S   +  +  +FF    + Y   +      D
Sbjct: 278 PEVCHVNPAILASLSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
 gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
          Length = 319

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+   K    W       +N W+P +VP+ +D+  W   N L  DE+ +  R     
Sbjct: 10  NWNQIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAW---NSLNADEQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     +   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTIQNTVGAPALMADAVTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA   L++                  +      +  V  E   FY+GF  
Sbjct: 124 WSEDNQPLQRKAEIILEHYH---------------HDDPLKKKIASVFLESFLFYSGFYL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I++DE++H  +      +   +       E QQ +  +L  
Sbjct: 169 PMYWSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKESPARKDELQQFAVELLLA 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+AY         VG +    ++++ + AN+    +G E LF       NP    +
Sbjct: 229 LYENELAYTEALYDG--VGWS-EEVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILSA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  + 
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVD 311


>gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
 gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
          Length = 322

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +                +         V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYR---------------GDDALKRKASSVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+   +  +G        YM++ AN+    +G +P F       NP    +
Sbjct: 232 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit 1
 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1
           [Mycobacterium tuberculosis H37Ra]
 gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1
           [Mycobacterium tuberculosis F11]
 gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis W-148]
 gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +                +         V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYR---------------GDDALKRKASSVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+   +  +G        YM++ AN+    +G +P F       NP    +
Sbjct: 232 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
 gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
          Length = 329

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W     L  +E+ +  R     
Sbjct: 20  NWNRINDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWA---ALKPEEQQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++  +     +      P         +F EAVH+ ++  I ++L    D  + + 
Sbjct: 74  TLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L++ +              + + L+      V  E   FY+GF  
Sbjct: 134 WSEENEFLQKKSALILEHYR--------------NPDPLKRKI-ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           IE4771]
          Length = 324

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   +    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDRDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++                   + L+      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSVLIMEQY--------------GSGDPLKKKI-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
          Length = 319

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLGKTSLEQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
 gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
          Length = 329

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGHKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320


>gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
 gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
          Length = 320

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    +    F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                E L+      V  E   FY+GF  
Sbjct: 125 WSESCEPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E   +            ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKTEETADDDWD 319


>gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 320

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    +    F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                E L+      V  E   FY+GF  
Sbjct: 125 WSESCDPLQRKAQLMLDYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E   +            ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni]
          Length = 322

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYHRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
          Length = 319

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  S+  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENASLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens
           YS-314]
 gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 334

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W +   LTD E+    R     
Sbjct: 25  NWNSIPDDKDLEVWD---RLTGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L       + F 
Sbjct: 79  TLLDTIQGTVGAVSLLPDAESLHEEAVLTNIAFMESVHAKSYSNIFMTLASTPQINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                E      +  V+ E   FY+GF  
Sbjct: 139 WSEENEALQRKAKIILAYYE---------------GEDPLKRKIASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E ++ +  +L++
Sbjct: 184 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYVGYKYQKALARESAQRQEELKEYAFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 244 LYENETQYTEDLYDE--LGWT-EDVKRFLRYNANKAMNNLGYEGLFPADETKVSPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAEHTEDEDWD 333


>gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
 gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506]
 gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
          Length = 387

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 190 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
 gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
          Length = 370

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 146/341 (42%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+  E+PM  D   +     
Sbjct: 36  TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PR 92

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+   A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 93  LDPEEQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 151

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++S+  ++   E+F  ++  P +  +  +     Q            +   +   +  V
Sbjct: 152 VLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQSFFEAMV 203

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q+  + P 
Sbjct: 204 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 263

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L TKE        +  A  LE  +AH T+     G++      Y+++IANRR   +GLE 
Sbjct: 264 LNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRITMMGLEK 322

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            ++  + N  PW+    D      + +FFE +   Y +  +
Sbjct: 323 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 363


>gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
 gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
          Length = 338

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        W        N W+P +VP+ +D+  W++   LT+ E+ M  R     
Sbjct: 29  NWNRVPDEVDDQVWG---RLTTNFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGL 82

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++    S P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 83  TLLDTIQGTVGAVSMIPDASTPHEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEAFR 142

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L Y                  +      +  V+ E   FY+GF  
Sbjct: 143 WAEENPYLQRKAKIILGYYA---------------GDNPLKRKIASVMLESFMFYSGFYL 187

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 188 PMRWSSRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLEHVTQAERDELKDYTFELLFE 247

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      VG      ++++++ AN+    +G E +F   E   +P    +
Sbjct: 248 LYDNEADYTEDLY--DPVGWT-EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSA 304

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 305 LSPNADENHDFFSGSGSSYVMGKAEATEDEDWD 337


>gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae
           bacterium 198]
          Length = 325

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 123/345 (35%), Gaps = 33/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 3   DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   AF EAVH+ ++  + ++
Sbjct: 57  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEESVLSNIAFMEAVHARSYSSVFST 116

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  E F    E   + AK+   L    + +SP                  V  V 
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYNSTASPLRKK--------------VASVF 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERVSEAERK 222

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF  
Sbjct: 223 EIKDFAFALLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPD 279

Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
                NP    +      +  +FF    + Y  G         WD
Sbjct: 280 ESCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324


>gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           dysenteriae Sd197]
          Length = 322

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F E VH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENALLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSSSSYVMGKAVE 311


>gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
          Length = 322

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 125/343 (36%), Gaps = 34/343 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D  +      + N++   K    W+       N W+P ++P+ +D+  W   +  +++E+
Sbjct: 3   DHLKTTIEAINWNRIPDPKDQEVWD---RLTGNFWLPEKIPLSNDIQSW---SRRSEEEQ 56

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            M           +++      +++      P         AF E+VH+ ++  I ++L 
Sbjct: 57  KMAMHVFTGLTLLDTVQGTVGAISLIPDAVTPHEEAVYTNIAFMESVHAKSYSQIFSTLA 116

Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
             +   E F+       +  KA   + Y +                +  +   V  V+ E
Sbjct: 117 NTKQIDEAFHWGATNEQLQKKAQIIMSYYE---------------GDDPEKRKVASVLLE 161

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   +      ++   A+  + I+RDE++H  +      +   +       E 
Sbjct: 162 SFLFYSGFYLPMRYSSHGELTNTADIIRLIIRDEAVHGYYIGYKYQKAVEKLSAERQAEL 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +  + ++L E    E  Y  +      VG      + ++++ AN+    +G E LF    
Sbjct: 222 KDYTFSLLMELYDNEEVYTEDIY--DPVGWT-EDVKVFLRYNANKALMNLGYEGLFPQEA 278

Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              NP    S   +  +  +FF    + Y  G  +      WD
Sbjct: 279 TQVNPAILASLSPNADENHDFFSGSGSSYVMGKAVETEDDDWD 321


>gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894]
          Length = 320

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 11  NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 65  TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +              D + L+      V  E   FY+GF  
Sbjct: 125 WSEENAPLQRKAQIILAHYR--------------DDDPLKKKI-ASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +  +  S  ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALAQVDDARRESLKTFSLDLMME 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+AY         VG        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                 +  +FF    + Y  G  +      WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDEDWD 319


>gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 319

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  S+  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENASLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
          Length = 325

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 122/345 (35%), Gaps = 33/345 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 3   DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   AF EAVH+ ++  + ++
Sbjct: 57  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNIAFMEAVHARSYSSVFST 116

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  E F    E   + AK+   L      +SP                  +  V 
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYDATASPLRKK--------------IASVF 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGMERLSEAERK 222

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +       + ++ + AN+    +G E LF  
Sbjct: 223 ELKDFAFGLLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPE 279

Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
                NP    +      +  +FF    + Y  G         WD
Sbjct: 280 ETCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324


>gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
 gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
          Length = 369

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 17/305 (5%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    +      +  W P EV +Q D   +     L ++E+ +   NL +    +S+  
Sbjct: 33  RYPIFEQLIEKQLSFFWRPEEVDLQRDRKDF---IALPENEKHIFLSNLKYQTLLDSVQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   AF E VHS ++ +II ++  +  ++F      P I  
Sbjct: 90  RSPNVAFLPIVSLPELETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIE 149

Query: 158 KANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           +A     Y   L          S +         +  L    V   V E + FY  FA  
Sbjct: 150 RAESISGYYDQLIAGVQKYHLSSETDRESQLHELKRLLLLTMVSVNVLEAIRFYVSFACS 209

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE----NPHLWTKEFQQKSRTM 264
            +     +M G A+  + I RDE+LHL+    ++ Q           +   E Q   R +
Sbjct: 210 FAFAEGARMEGNAKLIKLIARDEALHLSGTEFILRQWLHGGDDPQMQIVADEEQATIRQI 269

Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
             +A   E A+A+     G  +GLNA    QY++++ ++R   + L P++   +NP PWM
Sbjct: 270 FEDAAEQEKAWANYLFNDGSMIGLNAEILHQYIEYLTDQRLDALSLSPIYGRRDNPLPWM 329

Query: 324 SEVID 328
              + 
Sbjct: 330 DNWVS 334


>gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
 gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 327

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 18  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 72  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 132 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 237 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAV 318


>gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
 gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
          Length = 387

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 190 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae]
 gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi]
          Length = 322

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYHRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +        +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           ATCC 23445]
 gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 329

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320


>gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
 gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
          Length = 327

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 18  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 72  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                      L+      V  E   FY+GF  
Sbjct: 132 WSEENEFLQRKSTLILDQYHA--------------DNPLKKKI-ASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 237 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAV 318


>gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 324

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAATPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++  ++               + L+      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYRS--------------GDPLKKKV-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMVRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 155-74]
          Length = 319

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P    +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. 16M]
 gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella
           melitensis bv. 1 str. 16M]
          Length = 335

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 121/349 (34%), Gaps = 35/349 (10%)

Query: 12  AGEKRVNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             E  +N+  K     R       + N++   K    W        N W+P +VP+ +D+
Sbjct: 2   TEESFMNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDI 58

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W++   L   E+ +  R        +++      + +      P     L   +F EA
Sbjct: 59  QSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEA 115

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           VH+ ++  I ++L L     + +    E   +  K+   L                    
Sbjct: 116 VHARSYSSIFSTLCLTPDVDDAYRWSEENEFLQRKSTLILDQYHA--------------D 161

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+      V  E   FY+GF   +      K+   A+  + I+RDE++H  +      
Sbjct: 162 DPLKKKI-ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQ 220

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +          +E +  +  +L E    E+ Y         +       ++++ + AN+ 
Sbjct: 221 RALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKA 277

Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              +G E LF       NP    +   +  +  +FF    + Y  G  +
Sbjct: 278 LMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 326


>gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CFN 42]
 gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Rhizobium etli CFN 42]
          Length = 324

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   +                      V  V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYAS---------------GDALKKKVASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLETLSEERRQEIKYFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDGVGLS---EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 329

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 128/344 (37%), Gaps = 34/344 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           VD+        + N +   K    W+       N W+P ++P+ +D+  WK    +T  E
Sbjct: 9   VDNHTEPVKAINWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSWK---KMTPQE 62

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +    R        +++      +++                +F E+VH+ ++  I  +L
Sbjct: 63  QQATMRVFTGLTLLDTIQGTVGAISLVPDAETMHEEAVYTNISFMESVHAKSYSNIFMTL 122

Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                  E F    E  ++  KA   + Y +              D    + +     + 
Sbjct: 123 ATTPQINEAFRWSEENENLQRKAKIIMSYYR-------------GDDPLKKKV--ASTLL 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           E   FY+GF   + L    K+   A+  + I+RDES+H  +      Q   +      +E
Sbjct: 168 ESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEKQQE 227

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++  +  ++++    E+ Y  +      +G      ++++++ AN+  + +G E LF   
Sbjct: 228 YKDYTFDLMYDLYENELEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTD 284

Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           E   +P    S   +  +  +FF    + Y  G      +  WD
Sbjct: 285 ETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEETVDDDWD 328


>gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae]
          Length = 328

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W + N L   E+    R     
Sbjct: 19  NWNSIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIKSWNTLNDL---EKQTTMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +          AF E+VH+ ++  I  +L       + F 
Sbjct: 73  TLLDTIQGTVGAVSMLPDAVSLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPEINDAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y              + D    + +     + E   FY+GF  
Sbjct: 133 WSEENENLQKKAKIILSYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E +  +  +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALRKETPERQAELKGYTFDLLYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEALFPADECRVSPAILSA 294

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 295 LSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327


>gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 320

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P ++P+ +D+  W+S   L+  E+ +  R     
Sbjct: 11  NWNRIEDEKDLEVWN---RLTSNFWLPEKIPLSNDIPAWQS---LSHAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       ++      P     L    F EAVH+ ++  I ++L    D    + 
Sbjct: 65  TLLDTVQNTVGAPSLMPDALTPHEEAVLSNIGFMEAVHARSYSSIFSTLCQSKDVDAAYA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L +                  +      +  V  E   FY+GF  
Sbjct: 125 WSEENAPLQQKARTVLGHYAA---------------DCPLKRKIASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P    +  + ++  +L  
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKIPPARREALRNEAVDLLMN 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY      +   G      ++++ + AN+    +G E LF       NP    +
Sbjct: 230 LYENELAYTEALYAQ--TGWT-EEVKRFLCYNANKALMNLGYEALFPAEMADVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVMGKTVGTHDEDWD 319


>gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
 gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
          Length = 319

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           UTI89]
 gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           APEC O1]
 gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 319

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           1330]
 gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis biovar Abortus 2308]
 gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis
           ATCC 25840]
 gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis
           ATCC 23365]
 gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           S19]
 gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           F5/99]
 gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
 gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis
           1330]
 gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308]
 gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis
           ATCC 25840]
 gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365]
 gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19]
 gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
          Length = 329

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320


>gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 238

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%)

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   D  E    F     VPS+  KA WAL +              
Sbjct: 1   MENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIN------------ 48

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D     +  + +   EG+ F   F  I  L +   M G+    + I RDE LH +F  
Sbjct: 49  --DDNCFSERLIAFACVEGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFAC 106

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + N +       +T+   ++   ++  A  +E  +  E++P   +G+N+    +Y++F+
Sbjct: 107 LLYNMMH------YTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFV 160

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R    +G   L+  T NPF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 161 ADRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 208


>gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 343

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 152/341 (44%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+P E+PM  D + +     
Sbjct: 9   TEAPNRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PM 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+G  A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 66  LDAEEQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++SL  ++   E+F  ++  P +  +         T  S  +     + + +      V
Sbjct: 125 VLSSLVSEQEQKEIFEYWKNDPVLLER--------NTFISAIYQEFRDEQNPQTFFQAMV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q+  + P 
Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLADFPE 236

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L TKE       M++ A  LE  +AH T+ K   G++      Y++++AN R   +G++ 
Sbjct: 237 LNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRLRLLGMDK 295

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            ++  + N  PW+    D      + +FFE +   Y +  +
Sbjct: 296 AYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336


>gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 319

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W   N L  +E+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW---NSLNAEEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AKA   LQ+                  +      +  V  E   FY+GF   + 
Sbjct: 127 ENAPLQAKAQIILQHY---------------YHDDALKKKIASVFLESFLFYSGFYLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G + LF       NP    +   
Sbjct: 232 NEVAYTEALYAG--VGWQ-EDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
 gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
          Length = 328

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 117/334 (35%), Gaps = 29/334 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            K       + N++   K    W        N W+P +VP+ +D+  W++   L  +E+ 
Sbjct: 10  PKPAAVRAINWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKREEKQ 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +  R        +++      + +      P     L   +F EAVH+ ++  I ++L L
Sbjct: 64  LTIRVFTGLTLLDTIQNAVGAVKLMDDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL 123

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                + +    E   +  K+   L                    + L+      V  E 
Sbjct: 124 TPDVDDAYRWSEENEFLQRKSVLILDQYHA--------------GDPLKKKI-ASVFLES 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
             FY+GF   +      K+   A+  + I+RDE++H  +      +          +E +
Sbjct: 169 FLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNGEQKQEIK 228

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317
             +  +L E    E+ Y         +       ++++ + AN+    +G E LF     
Sbjct: 229 DFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPADAC 285

Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             NP    +   +  +  +FF    + Y  G  +
Sbjct: 286 KVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 319


>gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE15]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01]
          Length = 381

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 28/356 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V++  + M   +   + Q L  KY    +   +     W P EV +Q D + +++   L 
Sbjct: 14  VDLKQQPMFFGQPLGIQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQN---LR 70

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      LA   + S PE    +    F E +HS ++ +II
Sbjct: 71  PEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHII 130

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-------------- 181
            +L     E+F+       I  +A    +   +  + +      +               
Sbjct: 131 KNLYPQPEEVFSTILSDSKIMERAKSVTESYDSFINAAHHYDNGNGWKFAKEGVPASQAE 190

Query: 182 ---DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +  L    +   + EG+ FY  FA   + G    M G A+    I RDE+ HL   
Sbjct: 191 RYELKRKLFRAVMTVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDENQHLFLT 250

Query: 239 IDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++IN  +  +     K + ++     ++   A   E A+A      G  +GL+      
Sbjct: 251 QNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAAVDQEKAWAQYLFKTGSMIGLSEKLLCN 310

Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
           Y+++IANRR   IG++P++      NP PWM   +  K  +N   ET +  Y  G 
Sbjct: 311 YVEWIANRRMKAIGIKPIYEIPANSNPLPWMDHWLKSKGVQNAPQETEIESYIVGG 366


>gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LF82]
 gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog
           virus]
          Length = 387

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 190 VEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELE 296

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +      L     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit
           [Escherichia coli AA86]
          Length = 319

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARHEELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 331

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 31/351 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            G    +   +R+            +      E +     N W+P +VP+ +D+  W + 
Sbjct: 1   MGAHEPHSPARRVKGDPISAINWNSIPDDKDLEVWDRLTANFWLPEKVPLSNDVQSWGT- 59

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + ER    R        +++      +++                +F E+VH+ ++
Sbjct: 60  --LNEVERQTTMRVFTGLTMLDTIQGTVGAVSLINDAQTMHEEAVYTNISFMESVHAKSY 117

Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I  +L       + F    E   +  KA   L +              + D    + +
Sbjct: 118 SSIFMTLASTPEINDAFRWSEENEHLQNKAKIILDFY-------------EGDDPQKRKI 164

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
               V+ E   FY+GF   +      K+   A+  + I+RDES+H  +      +   + 
Sbjct: 165 --ASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRAMEQE 222

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                +E +  +  +L E    E  Y  +   +  +G      ++++++ AN+  + +G 
Sbjct: 223 SAARQEELKDHTFDLLLELYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGY 279

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           E LF   E   +P    +      +  +FF    + Y  G      +  WD
Sbjct: 280 EGLFPADETRVSPAILSALNPGGDENHDFFSGSGSSYVIGKAENTTDDDWD 330


>gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 319

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDE++H  +      + + +      +E ++ +  +L E
Sbjct: 169 PMYLSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNQEKISLTQREELKRFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAKVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus]
          Length = 387

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 190 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDE++H+     +   +  E P +  ++  +  +        LE
Sbjct: 237 RRGKMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 323

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +DL+ W     LT+ E+ +  R     
Sbjct: 13  NWNRLQDEKDLEIWN---RLTVNFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++  +    A+            L   AF EAVH+ ++  + ++L   +   E F 
Sbjct: 67  TLLDTIQNSVGAPALMVDAVTQHEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L   Q                E      +  V  E   FY+GF  
Sbjct: 127 WSEENPHLQRKAQLILHEYQA--------------GECPLKKKIASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +       + +  + ++L +
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLAYRQLDEAQQAQIKDYAFSLLFD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E +Y         +       + ++ + AN+    +G EPLF       NP    +
Sbjct: 233 LYEAEASYTEFLYDPVGL---TEEVKHFLHYNANKALMNLGFEPLFPEEVCEVNPAILAA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGQAVATQDEDWD 322


>gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CIAT 894]
          Length = 324

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 119/331 (35%), Gaps = 30/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++      + +      P     L   +F EAVH+ ++  I ++L      + N Y
Sbjct: 69  TLLDTIQNGVGSIRLMEDAITPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPD-VDNAY 127

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R         N  LQ    L    + +G     +       V  V  E   FY+GF   +
Sbjct: 128 RWSEE-----NEFLQRKSALIMEQYASGDPLKKK-------VASVFLESFLFYSGFYLPM 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 K+   A+  + I+RDE++H  +      +          +E +  +  +L E  
Sbjct: 176 YWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLELLGEERRQELKDFAFDLLLELY 235

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y      +  +       ++++ + AN+    +G E LF       NP    +  
Sbjct: 236 DNEARYTEALYDRVGL---TEDVKEFLHYNANKALMNLGYEALFPAEACKVNPAILSALS 292

Query: 327 IDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +FF    + Y  G  +      WD
Sbjct: 293 PNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC
           49188]
          Length = 328

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 117/335 (34%), Gaps = 29/335 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           + K       + N++   K    W        N W+P +VP+ +D+  W++   L   E+
Sbjct: 9   NPKPAAVRAINWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEK 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +  R        +++      + +    + P     L   +F EAVH+ ++  I ++L 
Sbjct: 63  QLTIRVFTGLTLLDTIQNAVGAVKLMDDAATPHEEAVLSNISFMEAVHARSYSSIFSTLC 122

Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           L     + +    E   +  K+   L   +                +      +  V  E
Sbjct: 123 LTPDVDDAYRWSEENEFLQRKSVLILDQYRA---------------DDPLKRKIASVFLE 167

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   +      K+   A+  + I+RDE++H  +      +          +  
Sbjct: 168 SFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNEEQKQAI 227

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +  +  +L E    E+ Y         +       ++++ + AN+    +G E LF    
Sbjct: 228 KDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEA 284

Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              NP    +   +  +  +FF    + Y  G  +
Sbjct: 285 CKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 319


>gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli
           CIAT 652]
 gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CIAT 652]
          Length = 324

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDIDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++            G+ DA ++ +       V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQY----------GSGDALKKKV-----ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          ++ +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQQIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E +  G         ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEARYT-EALYDGLGLT--EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
          Length = 319

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQTRREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           042]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQKLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMKKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina
           loihiensis L2TR]
 gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR]
          Length = 377

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 132/339 (38%), Gaps = 25/339 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              E+   + +   L    +V +    K+    +      +  W P E+ +  D   +  
Sbjct: 6   FNQEQNNPLTEPMFLGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEIDVSRDRIDF-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N LT  E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSF 174
           + +I+ +L  D  E+F        I  +AN   +Y   L                     
Sbjct: 123 YTHILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYTQLLQTHGEGDVVVEGKT 182

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            T T+   ++ L          E + FY  FA   +      M G A+  + I RDE++H
Sbjct: 183 HTVTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIKLIARDENVH 242

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N  +        KE  ++    +  +   A   E  +AH     G  +GLN 
Sbjct: 243 LTSTQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAVKQEKQWAHYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
               QY+++IAN R   IG +  F     NP PWM++ +
Sbjct: 303 SMLCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNKYL 341


>gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
 gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
          Length = 326

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +DL  W++   L   ++ +  R     
Sbjct: 17  NWNRIQDDKDLEVWN---RLTSNFWLPEKVPLSNDLPGWQT---LDKQQQQLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 71  TLLDTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQ 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                + L+      V  E   FY+GF  
Sbjct: 131 WSEENGPLQNKARIILEHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q       L  +E QQ +  +L  
Sbjct: 176 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLA 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+AY         VG      + ++ + AN+    +G E LF       NP    +
Sbjct: 236 LYENEVAYTEALYGD--VGW-VDEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 293 LSPNADENHDFFSGSGSSYVMGKAVE 318


>gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
 gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISPGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 343

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+  E+PM  D   +     
Sbjct: 9   TEAPNKSTRIIGGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMAKDAQQFA---L 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+   A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 66  LDPEEQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++S+  ++   E+F  ++  P +  +  +     Q            +   +   +  V
Sbjct: 125 VLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNFRD--------EPTPQSFFEALV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+G ++   YI RDE+ H  F  +V  Q+ I+ P 
Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQRDENQHCYFFAEVFKQLLIDYPE 236

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L TKE    +   +  A  LE  +AH T+ K   G++      Y+++IAN+R   +GLE 
Sbjct: 237 LNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDLNELSDYIKYIANKRLTLMGLEK 295

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            +   + N  PW+    D      + +FFE +   Y +  +
Sbjct: 296 AYAGVDINCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336


>gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKVLMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 335

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 26  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 80  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 140 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 185 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 245 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAV 326


>gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 319

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILTA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 320

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTEL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    +    F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                E L+      V  E   FY+GF  
Sbjct: 125 WSESCDPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E   +            ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 329

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLFEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320


>gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium
           tuberculosis str. Erdman]
          Length = 321

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +              D    Q      V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYR-------------GDDAQAQRS---SVMLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+   +  +G        YM++ AN+    +G +P F       NP    +
Sbjct: 231 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 288 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320


>gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 376

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 37/350 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+               ++ +    K+    +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFLGQPV-------------NIARFDQQKHSIFEKLIEKQLSFFWRPEEIDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++S   L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SKDRIDFQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS---------- 171
           F E +HS ++ +II ++      +F+       I  +A     Y   L            
Sbjct: 114 FFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGP 173

Query: 172 --PSFTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                   T   +   L+      +    V E + FY  FA   +      M G A+  +
Sbjct: 174 GIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIR 233

Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHLN    ++N ++   ++P +   + E QQ+S  +   A   E  +A+    
Sbjct: 234 LIARDEALHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFK 293

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
            G  +GLN     QY+++I N R   IGL   F    N  PW++  +   
Sbjct: 294 DGSMIGLNKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSD 343


>gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
          Length = 319

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 321

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 122/310 (39%), Gaps = 23/310 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W +   L+D E+    + LG     +++     +  I
Sbjct: 20  FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L   A  E +H+ ++  I T+L   E    +F    E P +  KA   
Sbjct: 77  MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY   + +P           + L       V+ E   FY+GF   L L    KM    E
Sbjct: 137 RQYYMNIHTP-----------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGE 185

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
               I+RDES+H  +   +  +I  E      ++  Q    +L      E  Y  +   P
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYTP 245

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
            G V       + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  + 
Sbjct: 246 IGLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKG 300

Query: 341 TEYQQGAELK 350
             Y +   ++
Sbjct: 301 NGYVRAMNVE 310


>gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
 gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
          Length = 333

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W +   L D E+L   R     
Sbjct: 24  NWNSIPDDKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNDAEQLSTMRVFANL 77

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 78  TLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSNIYMTLASTPQINDAFR 137

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA     Y                  +      +  V+ E   FY+GF  
Sbjct: 138 WTEENAEVQRKAKIIQSYYC---------------GDDPLKRKIASVMLESFLFYSGFYL 182

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L+    +K+   A+  + I+RDE++H  +          +       E ++ +  +L++
Sbjct: 183 PLNWSVHSKLTNTADIIRLIIRDEAVHGYYIGYKYQVGLRDESQQRQDELKEHAFDLLYD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 243 LYDNEIQYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILAS 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 300 LAPNADENHDFFSGSGSSYVIGKAEDTQDDDWD 332


>gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
 gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
          Length = 335

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 26  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 80  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                    + L+      V  E   FY+GF  
Sbjct: 140 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 185 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 245 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAV 326


>gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 335

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +D+  W   N L + E++   R     
Sbjct: 26  NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSW---NTLNETEQIATMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  K    L               +D D +      +   + E   FY+GF  
Sbjct: 140 WSEENVNLQRKGEIIL---------------RDYDGKNPYKRKIASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +++         E +  +  +  +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +G      ++++++ AN+  + +G E L+   E   +P    +
Sbjct: 245 LYDNEEQYTEDMYDE--LGWT-EDVKRFLRYNANKALNNLGYEALYPSDETRVSPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
              +  +  +FF    + Y  GA     +  WD
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334


>gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
          Length = 319

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKKLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
          Length = 320

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 117/322 (36%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    +    F 
Sbjct: 65  TLLDTIQNTVGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                E L+      V  E   FY+GF  
Sbjct: 125 WSESCEPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E   +            ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308


>gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 335

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +D+  W +   L + E++   R     
Sbjct: 26  NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  K    L               +D D +      +   + E   FY+GF  
Sbjct: 140 WSEENVNLQRKGEIIL---------------RDYDGKNPYKRKIASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +++         E +  +  +  +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +G      ++++++ AN+  + +G E L+   E   +P    +
Sbjct: 245 LYDNEEQYTEDMYDE--LGWT-EDVKRFLRYNANKALNNLGYEALYPSDETRVSPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
              +  +  +FF    + Y  GA     +  WD
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334


>gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
 gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
          Length = 301

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 116/311 (37%), Gaps = 26/311 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +N W+P +VP+ +D+  W++   LT  E+ +  R        ++L       ++
Sbjct: 1   MWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSL 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWA 162
                 P     L   +F E VH+ ++  I ++L    D    +    E   +  KA   
Sbjct: 58  MPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSEENALLQRKAQII 117

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            Q+ +              D    + +    V  E   FY+GF   +      K+   A+
Sbjct: 118 QQHYR-------------GDNPLKKKI--ASVFIESFLFYSGFWLPMYFSSRGKLTNTAD 162

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+RDE++H  +      +   +      +E +  +  +L E    E+ Y  E   +
Sbjct: 163 LIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLELYDNELQYTDELYAE 222

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETR 339
                 A   + ++ + AN+    +G EPLF       NP    +   +  +  +FF   
Sbjct: 223 TPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS 279

Query: 340 VTEYQQGAELK 350
            + Y  G  ++
Sbjct: 280 SSSYVMGKAVE 290


>gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 317

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 116/322 (36%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   +    W       +N W+P +VP+ +D+  W S    T+ E+ +  R     
Sbjct: 7   NWNRIADDRDLEIWN---RLTSNFWLPEKVPLSNDIQSWSSF---TEAEKQLTIRVFTGL 60

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +     A+ +    P          F EAVH+ ++  I ++L    +  E F 
Sbjct: 61  TLLDTIQSKAGAPALMKDALTPHEEAVFANICFMEAVHARSYSSIFSTLCTTVEIDEAFR 120

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                      D        +  V  E   FY+GF  
Sbjct: 121 WAELNKDLQRKAKLIEACY--------------TDDTQPLKKKIASVFLESFMFYSGFYL 166

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      ++   A+  + I++DE++H  +            P    +E +  +  +L +
Sbjct: 167 PLHWASRARLTNTADLIRLIIKDEAVHGYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQ 226

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              +E +YA +      +       +Q++ + AN+    +G +P+F       NP    +
Sbjct: 227 LYEIECSYAADLYDGIGL---TEDVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAA 283

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              D  +  +FF    + Y  G
Sbjct: 284 LAPDANENHDFFSGSGSSYVIG 305


>gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
 gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
          Length = 343

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 146/341 (42%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+  E+PM  D   +     
Sbjct: 9   TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PR 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+   A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 66  LDPEEQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++S+  ++   E+F  ++  P +  +  +     Q            +   +   +  V
Sbjct: 125 VLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQSFFEAMV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q+  + P 
Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 236

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L TKE        +  A  LE  +AH T+     G++      Y+++IANRR   +GLE 
Sbjct: 237 LNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRITMMGLEK 295

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            ++  + N  PW+    D      + +FFE +   Y +  +
Sbjct: 296 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336


>gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 319

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 170/334 (50%), Gaps = 15/334 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +        V  K     +S   +L  + Y      Y  A NN+W+P E  + +D   + 
Sbjct: 1   MSYNTAVDEVIKKDGKVCQSYTYKLDSVVYPEILNLYTKAKNNYWIPEEYDLANDKHEF- 59

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L D ER  +   +GFF+S+E  V  NI+  I + + N E R +L  Q  EE  H  
Sbjct: 60  -YEKLNDIERHYMLHTVGFFSSAEGWVGQNILE-ISKRIRNTETRMFLGYQLMEEMKHID 117

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           TF+YI+  L L   E++ M+  V  I  KA++ ++    L            ++  ++D+
Sbjct: 118 TFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVKRAMALCEEP-------TEENLIEDI 170

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           FV+Y + EG++F++GF   L+ GR   +  +A   ++I++DE+ HL FGI ++N++  + 
Sbjct: 171 FVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALVRWILKDETRHLAFGIYLLNELLKDK 230

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                 +++ K R ++ EA  +E  YA   MP+  +GL+  +   Y++++A+RR   +G 
Sbjct: 231 NK---NDYKDKFRVLMEEAVDIETEYARVAMPEKIIGLSFETYTSYVKYLADRRMRSLGF 287

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           + ++   +NP  W++   DL    NFFE +V +Y
Sbjct: 288 DAIYGQ-KNPMKWLTTQTDLPDLTNFFEAKV-DY 319


>gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli RN587/1]
          Length = 319

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                E L+      V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DEPLKKKI-ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 324

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      + +    +       L   +F EAVH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAATSHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++  ++               + L+      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYRS--------------GDPLKKKV-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +       ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 331

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 22  NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      + +    + P         +F E+VH+ ++  I  +L       + F 
Sbjct: 76  TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L +              + D    + +    V+ E   FY+GF  
Sbjct: 136 WSEENEKLQNKAKIILDFY-------------EGDDPMKKKI--ASVLLESFLFYSGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDES+H  +      +          +E ++ +  +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 241 LYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 298 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 330


>gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   + +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPQLQRKAQIMMTHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKQSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E  Y      +          + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NETRYTEALYAE---TDWVDDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311


>gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli
 gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
           With Ferrous Ions
 gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           sonnei Ss046]
 gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           ETEC H10407]
 gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
 gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 3431]
 gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LT-68]
 gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1357]
 gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
 gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
 gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
          Length = 326

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +DL  W++   L   ++ +  R     
Sbjct: 17  NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 71  TLLDTIQNVIGAPGLMDDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQ 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                + L+      V  E   FY+GF  
Sbjct: 131 WSEENVPLQNKARIILEHYRA--------------NDPLKKKI-ASVFLESFLFYSGFWL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q       L  +E QQ +  +L  
Sbjct: 176 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLA 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+AY         VG      + ++ + AN+    +G E LF       NP    +
Sbjct: 236 LYENEVAYTEALYAD--VGW-VEEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 293 LSPNADENHDFFSGSGSSYVMGKAVE 318


>gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
 gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF +  + Y  G  ++
Sbjct: 286 LSPNADENHDFFSSSGSSYVMGKAVE 311


>gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 331

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 22  NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      + +    + P         +F E+VH+ ++  I  +L       + F 
Sbjct: 76  TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L +              + D    + +    V+ E   FY+GF  
Sbjct: 136 WSEENEKLQNKAKIILDFY-------------EGDDPMKKKI--ASVLLESFLFYSGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDES+H  +      +          +E ++ +  +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +   +  +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 241 LYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 298 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 330


>gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+ +W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPVWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M  +R        ++     E +    +N W+P +VP+ +D+  W++   L   E+ +  
Sbjct: 1   MTLSRVSAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTI 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LD 141
           R        +++       A+      P     L   +F EAVH+ ++  I ++L    D
Sbjct: 58  RVFTGLTLLDTIQNVAGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKD 117

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
               +    E   +  KA   L +               A  E L+      V  E   F
Sbjct: 118 VDAAYAWSEENTPLQRKAQIVLTHY--------------ASDEPLKKKI-ASVFLESFLF 162

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   +      K+   A+  + I+RDE++H  +      +          +E +  +
Sbjct: 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEHISESAREELKNFA 222

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318
             +L E    E  Y  E   +   G      + ++ + AN+    +G E LF       N
Sbjct: 223 FDLLMELYDNEARYTEELYAE--TGW-VDDVKAFLCYNANKALMNLGYEALFPPEMAEVN 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P    +   +  +  +FF    + Y  G  ++
Sbjct: 280 PTILAALSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           CFT073]
 gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           ABU 83972]
 gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAILSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A     ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVTAFLCYNANKALMNLGYEPLFPAGMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus
           equi 103S]
 gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus
           equi 103S]
          Length = 322

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 122/322 (37%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +DLA W +   LTD ER M  R     
Sbjct: 13  NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L         F 
Sbjct: 67  TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +                +         V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALARKAASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +             ++ +  +L  
Sbjct: 172 PMYWASHGELTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYDLLET 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+AYA +   +  VG  A     YM+F AN+    +G EP+F  +E   NP    +
Sbjct: 232 LYANEVAYAADLYDE--VGWTAEVVS-YMRFNANKALANLGYEPMFPVSECQVNPAILSA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIG 310


>gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 319

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+    I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIHLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895]
          Length = 319

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 116/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+ +    P     L   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNIAGAPALMQDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   LQ+                  +      +  V  E   FY+GF   + 
Sbjct: 127 ENAPLQRKAQIILQHY---------------TADNPLKKKIASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +       E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSESERDELKHFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E  Y  E   +   G        ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NESRYTEELYAE--TGW-VADVNAFLCYNANKALMNLGYEALFPAEMAEVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAIE 311


>gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK966]
 gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
 gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 319

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
 gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
          Length = 394

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 138/362 (38%), Gaps = 27/362 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +    +  +   K        V +    KY    +         W P EV +Q D A ++
Sbjct: 21  VFNTTQLDSTKQKMFFGPPLGVQRYDKFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 80

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L D ++ +   NL +    +S+      +A   + S PE    +      E VHS 
Sbjct: 81  ---VLNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPELEGAMNIWQTMEMVHSR 137

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWAL-----------------QYTQTLSSP 172
           ++ +II ++  D  ++F+   +   I ++A                     Q+   L   
Sbjct: 138 SYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAAQEWGAGKQWEHALEGV 197

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                  +  +  L        + EG+ FY  FA   + G    + G A+    I RDES
Sbjct: 198 DNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKLLEGSAKIIGLIARDES 257

Query: 233 LHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
            H+    +++N+ K  ++P +    KE ++    M  +    E  +A      G  +GLN
Sbjct: 258 QHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEKLWAEYLFKDGSIIGLN 317

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345
                +Y+++ ANRR   IGL+ +F    + NP PW    +  K  +    ET V  Y  
Sbjct: 318 DKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPWTEHWLSSKGMQVAPQETEVESYLI 377

Query: 346 GA 347
           G+
Sbjct: 378 GS 379


>gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli EPECa14]
 gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 319

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI39]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLTNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETSW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
 gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G +PLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYKPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           536]
 gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                + L+      V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DDPLKKKIT-SVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1180]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y +E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTNELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
 gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
          Length = 321

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 23/310 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W +   L+D E+    + LG     +++     +  I
Sbjct: 20  FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L   A  E +H+ ++  I T+L   E    +F    E P +  KA   
Sbjct: 77  MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY   + +P           + L       V+ E   FY+GF   L L    K+    E
Sbjct: 137 RQYYMNIHTP-----------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGE 185

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
               I+RDES+H  +   +  +I  E      ++  Q    +L      E  Y  +   P
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYAP 245

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
            G V       + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  + 
Sbjct: 246 IGLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKG 300

Query: 341 TEYQQGAELK 350
             Y +   ++
Sbjct: 301 NGYVRAMNVE 310


>gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 322

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 123/322 (38%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +DLA W +   LTD ER M  R     
Sbjct: 13  NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L         F 
Sbjct: 67  TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +                +         V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALARKAASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +             ++ +  +L  
Sbjct: 172 PMYWASHGKLTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYALLET 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+AYA +   +  VG  A     YM+F AN+    +G EP+F+ +E   NP    +
Sbjct: 232 LYANEVAYAADLYDE--VGWTAEVVS-YMRFNANKALANLGYEPMFRASECQVNPAILSA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIG 310


>gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli STEC_7v]
          Length = 319

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
 gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 319

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDTLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L +               A    LQ      V  E   FY+GF  
Sbjct: 124 WSEENNPLQRKAQIILAHY--------------ASDNPLQKKI-ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLAHISESAREELKNFALDLLME 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  E   +   G  A   + ++ + AN+    +G E LF       NP    +
Sbjct: 229 LYDNEAQYTDELYAE--TGW-ADDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              + ++  +FF    + Y  G  ++
Sbjct: 286 LSPNAEENHDFFSGSGSSYVMGKAVE 311


>gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia floridanus]
 gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus
           Blochmannia floridanus]
          Length = 376

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 139/351 (39%), Gaps = 39/351 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NN  L P+  G+    V+  R    +  + +          +      +  W P E+ +
Sbjct: 10  KNNQLLEPMFFGQP---VNIARFDQQKHIIFE----------KLIEKQLSFFWRPEEIDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   ++S   L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +
Sbjct: 57  SKDRIDYQS---LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWS 113

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------- 170
           F E +HS ++ +II ++      +F+       I  +A     Y   L            
Sbjct: 114 FFETIHSRSYTHIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLTNYYYTLGI 173

Query: 171 ------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                 + + T    +  ++    L    V  E + FY  FA   +      M G A+  
Sbjct: 174 GKHRVNNTTITVNLHELKKKLYLCLISVNV-LEAIRFYVSFACSFAFAERELMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHLWTKE--FQQKSRTMLHEATLLEIAYAHETM 280
           ++I RDESLHLN    ++N ++   ++P +       Q++S  +   A   E  +AH   
Sbjct: 233 RFIARDESLHLNATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQEKTWAHYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
             G  +GLN     QY+++I N R   IGL+  F    N  PW++  +   
Sbjct: 293 KDGSMIGLNKEILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWINAWLSSD 343


>gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus]
 gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus]
          Length = 387

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 19/319 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 190 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + T++  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA 347
                NFFE  VTEY+ G 
Sbjct: 357 GADLTNFFENHVTEYETGG 375


>gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small
          Length = 334

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 9   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 66  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 287 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 315


>gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 324

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 118/322 (36%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P ++P+ +D+  W +   L D E+ +  R     
Sbjct: 15  NWNRLQDDKDLEVWN---RLTSNFWLPEKIPLSNDVPSWNT---LNDREQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P         +F E+VH+ ++  I ++L    D  + + 
Sbjct: 69  TLLDTIQGTIGAPALIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L+  +T             D   ++ +    V  E   FY+GF  
Sbjct: 129 WSEENTHLQNKAELILERYRT-------------DDPLMRKV--ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 174 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEKESAERQRQIKDTTYDLLLD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               E+ Y      +  +       + ++ + AN+    +G E LF        P    +
Sbjct: 234 LYDNEVQYTESLYDEVGL---TEDVKAFLHYNANKALMNLGYEALFPNATEAVDPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                ++  +FF    + Y  G
Sbjct: 291 LSPGAEENHDFFSGSGSSYVIG 312


>gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIFLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 378

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 147/345 (42%), Gaps = 26/345 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M    + +V +    K+    +      +  W P E+ +  D   +     L  +E+ 
Sbjct: 16  EPMFFGNTVNVARFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDFA---KLLPNEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+ + +  +A    +S PE   ++   +F E +HS ++ +II ++  
Sbjct: 73  IFISNLQYQILLDSVQSRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTHIIRAIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDA------DQE 184
           + G +F+   ++  I  +A    ++   L   +          F    K+        ++
Sbjct: 133 EPGIVFDDIMKIDEIIQRAESVSKHYNELIKCTQAYLLHGIGKFKVQDKEILIDLYCLKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +   + E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 QLYLTIMSVNILEAVQFYVSFACSFAFAERKVMEGNAKIIRMIARDEALHLTGTQHILNL 252

Query: 245 I--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           +    ++P +    KE +++  TM  EA   E  +A      G  +GLNA   +QY+++I
Sbjct: 253 MSDGKDDPDMKKIAKECEKEVITMFKEACEQEKDWAEYLFRDGSMIGLNAKMLKQYLEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
            N R   + L P+F    NP PW++  +D    +    ET +T Y
Sbjct: 313 TNVRMKALNLSPVFDECINPLPWINHWLDSDNVQVAPQETEITSY 357


>gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 319

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 319

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  KE +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIERKELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D  +  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPARNSLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++  
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYNV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus
           sp. JDR-2]
 gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2]
          Length = 318

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 113/304 (37%), Gaps = 21/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     ++D ER + K  LG     +++     +  I
Sbjct: 17  FWQQNVMQFWTDEEIPLSDDKMDW---MEMSDTERTVYKNVLGGLTLLDTIQGGVGMPKI 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L   +  E +H+ ++  I T+L   E    +F        +  KA   
Sbjct: 74  LEHVDGLQRKAVLAFMSMMEQIHAKSYSSIFTTLASTEEIDAIFQWVETNEQLQKKATLV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + Q +             ++ L       V  E   FY+GF   L L    KM    E
Sbjct: 134 SSWYQGIE-----------TKQQLYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++  +       + +++   +L+     E+ Y       
Sbjct: 183 IIDLILRDESIHGLYVGVLAQELFNQFTPEEQAQLKEEVFALLNTLYENEVVYTDNLYSP 242

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +       + Y+++ AN+    +G EP F     NP  + + +    K+ +FF  +  
Sbjct: 243 IGLQ---EDVKAYVRYNANKALMNLGFEPYFPEEPVNPIVF-NGISTHTKQHDFFSKKGN 298

Query: 342 EYQQ 345
            Y +
Sbjct: 299 GYVR 302


>gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli E128010]
          Length = 319

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K++  A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLINTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           sediminis HAW-EB3]
 gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 376

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 41/377 (10%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N+  L P+  G   VNV       +R D       K+    +      +  W P E+ 
Sbjct: 9   VKNDQLLEPMFLGNS-VNV-------SRYDQQ-----KHVSFEKLIEKQLSFFWRPEEID 55

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D A W+    LT+ E+ +   NL +    +S+ A ++   +   +S PE   ++   
Sbjct: 56  ISKDRADWQ---RLTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETW 112

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------- 170
           AF E +HS ++ +I+ +L  + GE+F+     P+I  +A    +Y   +           
Sbjct: 113 AFSETIHSRSYTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKYFDDVILTTQLLQSQG 172

Query: 171 --SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             S      T +     L++     V      E + FY  FA   +      + G A+  
Sbjct: 173 EGSYEVNGETIEVSARKLKERLYLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIAYAHETM 280
           + I RDE+LHL+    ++      N      E  Q+ R     +  +    E  +A    
Sbjct: 233 KLIARDEALHLSGTQHILKLWANGNDDPEMVEVCQELREAGRQVFLDVVEQEKEWADYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338
             G  +GLNA   +QY+++I+N R   IG E  F    NP PW++  +     +    E+
Sbjct: 293 KDGSMIGLNAEILKQYIEYISNNRMEAIGYEAPFAIKNNPLPWINTYLVSDNVQVAPQES 352

Query: 339 RVTEY---QQGAELKWD 352
            +T Y   Q  A +  D
Sbjct: 353 EITSYLVGQVDATVSDD 369


>gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           radiobacter K84]
 gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter
           K84]
          Length = 329

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 119/336 (35%), Gaps = 30/336 (8%)

Query: 20  DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + KR    R+ + N++   K    W        N W+P +VP+ +D+  W     L  +E
Sbjct: 9   NPKRPEAVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWA---ALKPEE 62

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + +  R        +++  +     +                +F EAVH+ ++  I ++L
Sbjct: 63  QQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITSHEEAVYSNISFMEAVHARSYSSIFSTL 122

Query: 139 G--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
               D  + +    E   +  K+   L+  +              + + L+      V  
Sbjct: 123 CSTPDIDDAYRWSEENEHLQRKSALILEQYR--------------NGDPLKRKI-ASVFL 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           E   FY+GF   +      K+   A+  + I+RDE++H  +      +          +E
Sbjct: 168 ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEEGRQE 227

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +  +  +L E    E  Y         +       ++++ + AN+    +G E LF   
Sbjct: 228 IKDFAFDLLLELYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPPE 284

Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               NP    +   +  +  +FF    + Y  G  +
Sbjct: 285 ACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 320


>gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D  +  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIRKMAQWVQQWM-------------DPVKNSLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   +      K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
            ENPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -ENPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
          Length = 319

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus
           Benin 97/1]
          Length = 327

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
 gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
          Length = 319

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALMPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 319

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 301]
 gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 2457T]
 gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 5 str. 8401]
 gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2002017]
 gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 4343-70]
 gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-671]
 gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2747-71]
 gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella
           flexneri 2930-71]
 gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri VA-6]
 gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-218]
 gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-304]
          Length = 319

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ +  N+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 319

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPTLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported]
           - Buchnera sp. (strain APS)
 gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 376

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 24/342 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I + +K   + +        ++ +    KY    +      +  W P E+ +  D   ++
Sbjct: 5   IFSKKKNNQLKEPMFFGQPVNIARYDQQKYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ 64

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           +   L D+E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS 
Sbjct: 65  N---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWIETWSFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++      +F+      +I  +A     Y   L + +        G    +  
Sbjct: 122 SYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLTSYWHLLGEGIHLINGK 181

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +   V E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 KIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241

Query: 234 HLNFGIDVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N +      EN      E ++++  +   A   E  +A      G  +GLN
Sbjct: 242 HLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEKKWASYLFKSGSMLGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
                QY+++I N R H IG +  FK   NP PW+++ +   
Sbjct: 302 KDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWINDWLTSD 343


>gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13]
          Length = 296

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 18/231 (7%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    FN    +P I  KA WAL++ Q            DAD  F + L  F    E
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           G++F   FA I  L +   M G+    + I RDE LH +F    +   + +
Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLFVRPFEEQ 290


>gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
 gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
          Length = 323

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W     LT  E+ +  R     
Sbjct: 14  NWNRVEDEKDLEVWN---RLTSNFWLPEKVPLSNDIPSWA---MLTAQEKQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        + +    P         +F EAVH+ ++  I ++L +  D  + + 
Sbjct: 68  TLLDTIQNTVGAPTLLQDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L +                  +      +  V  E   FY+GF  
Sbjct: 128 WSEENTTLQKKAQIILNHYH---------------HDDPLKKKIASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +   +  +E +  +  +L +
Sbjct: 173 PMYFSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAVRRQEIKNFTFELLQD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  E      VG +    ++++ + AN+    +G E LF   E   +     +
Sbjct: 233 LYDNEVRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPANEVTVSAAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 322


>gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus
           OURT 88/3]
 gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75]
 gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1]
          Length = 334

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 9   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 66  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 287 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 315


>gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 326

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 6/309 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    E Y       W P E+ +Q D+  +KS   LT  E+ +    +G+FASSE LV 
Sbjct: 20  KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ S  +D  +++N+  E   +  
Sbjct: 77  NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLEDKLLKE 136

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EG++FY+ FA   ++    KM
Sbjct: 137 KQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  +  ENP +     F +  R  + +A  LE+ Y 
Sbjct: 197 KNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVDDYNFVENIRQSIIDAVELELNYL 256

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P F   +NP  ++ +  D+KK  NF
Sbjct: 257 KTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315

Query: 336 FETRVTEYQ 344
           FE   TEY 
Sbjct: 316 FEVSSTEYT 324


>gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus
           radiotolerans SRS30216]
 gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans
           SRS30216]
          Length = 323

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 117/325 (36%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W++   L   ER +  R     
Sbjct: 14  NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWQN---LGAQERTLTLRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 68  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFA 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  KA+  L+Y                  +      V   + E   FY+GF  
Sbjct: 128 WSEDNEALQRKASIVLEYYH---------------GDDPLKRKVASTLLESFLFYSGFFL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 173 PMHFSSRAQLTNTADLVRLIIRDEAVHGYYIGYKFQRGLELVDQAKRDEIKDYAFELLYE 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E  Y  +      +       + ++ + AN+    +G E +F       +P    +
Sbjct: 233 LYDNECKYTADLYDGVGL---TEDVKTFLHYNANKALMNLGYEGMFPSDMTKVDPSILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAV 314


>gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 319

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEIADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 319

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 117/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +          + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE---TDWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
 gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
          Length = 417

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 30/331 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L+ +S+   + P+KY   W+ Y     N+W   EV +  D+  W   N L+DD+R 
Sbjct: 98  KEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWN--NHLSDDDRN 155

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+++ +V  NI   +   +   E       Q   E  H   +  ++T+   
Sbjct: 156 FIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVK 215

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D     +L N  + +PSI  KA+W  ++ ++             D+ +   L  F +V E
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-E 261

Query: 198 GMWFYTGFAQILSLGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           G++F   FA I  L       M G+    Q+I RDE+ H+     + +        L  +
Sbjct: 262 GVFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSL-------LNNR 314

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +     ++ EA  +E  + ++++P   +G+N+    QY++++A+R    +G    F  
Sbjct: 315 LKESVVYQIIDEAIEIEEEFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFNV 374

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
             NPF +M + ID+  + NFFE R   Y   
Sbjct: 375 D-NPFEYMKK-IDVFVKANFFEKRNDAYSNA 403


>gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 376

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            + +K   + +   L    +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSPKKNNQLLEPMFLGQSVNVVRFDQQKYESFEKLIEKQLSFFWRPEEVDISLDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +   N+ +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     +   L   +     F  G    +   
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMTSYFHLFGEGNHSINGKL 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +++            E Q  S  +   A   E  +A      G  +GLN 
Sbjct: 243 LAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEKDWASYLFRDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   + L+  F    NP PW++  +
Sbjct: 303 EILCQYIEYITNIRMQAVLLDLPFATRSNPIPWINSWL 340


>gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 319

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKSQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D  +  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 RIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum]
          Length = 334

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 129/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L + E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L    +  + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y              + D    + +    V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+ +      +G      ++++++IAN+  + +G E LF   E   +P    +
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYIANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333


>gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+   + P I   A W  Q+              D  +  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   +      K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
 gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
          Length = 343

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 147/341 (43%), Gaps = 19/341 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N   + +    S +     ++    ++ Y     NHW+  E+PM  D   + +   
Sbjct: 9   TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQFPT--- 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+   K N+   A  +S+     V  + R+ ++            +E VH+ ++ Y
Sbjct: 66  LDSEEQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124

Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +++S+  D+   E+F  ++  P +  +  +     Q            +   +   +  V
Sbjct: 125 VLSSIVSDQEQKEIFEYWKHDPVLLERNQFISDIYQNFRD--------NPSPQTFFEAMV 176

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q+  + P 
Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 236

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L ++E        +  A  LE  +AH T+     G++      Y+++IANRR   +GLE 
Sbjct: 237 LNSQENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELGDYIKYIANRRITMMGLEK 295

Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348
            ++  + N  PW+    D      + +FFE +   Y +  +
Sbjct: 296 AYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336


>gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 359

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 128/314 (40%), Gaps = 24/314 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   +++   L D+E+ +   NL +    +S+  
Sbjct: 16  KYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++      +F+      +I  
Sbjct: 73  RSPNIAFLPIISIPELETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYD 132

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A     Y   L + +        G    +           ++ L    +   V E + F
Sbjct: 133 RAQNISIYYDELINLTSYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI----KIENPHLWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N +      EN      E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++  +   A   E  +A      G  +GLN     QY+++I N R H IG +  FK  
Sbjct: 253 KEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQ 312

Query: 317 ENPFPWMSEVIDLK 330
            NP PW+++ +   
Sbjct: 313 SNPIPWINDWLTSD 326


>gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
          Length = 319

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                + L+      V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DDPLKKKIT-SVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 QMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +     +    + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 319

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALNLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 378

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 139/356 (39%), Gaps = 25/356 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I   +    +          +V +    K+    +      +  W P E+ +  D   + 
Sbjct: 5   IFNKKISNTLIQPMFFGDSMNVTRFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF- 63

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             + L  +E+ +   NL +    +S+      +A    +S PE   ++   +F E +HS 
Sbjct: 64  --SKLLPNEKHIFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEVENWIETWSFSETIHSR 121

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-------- 181
           ++ +II ++  + G +F+   +   I  +A  A ++   L   +                
Sbjct: 122 SYTHIIRAIINEPGVIFDDIMKTDEIIQRAESASKHYDGLIKYTQAYLLHGTGKLKIQEE 181

Query: 182 --------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +   + E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 182 EVSIDLYCLKKQLYLTIMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 241

Query: 234 HLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N +      L     +KE Q +  TM  EA   E  +A      G  +GLN
Sbjct: 242 HLTGTQHMLNLMSSGKDDLDMQKISKECQDEVITMFREACEQEKDWAEYLFRDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
           A   +QY+++I N R   + L  +F    NP PW++  +D    +    ET +T Y
Sbjct: 302 AQILKQYLEYITNVRMKALNLSLIFDECTNPLPWINHWLDSDNVQVAPQETEITSY 357


>gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 394

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 28/359 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + +VN   + M       V +    KY    +         W P EV +Q D A ++   
Sbjct: 24  KNKVNTTKQPMFFGAPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ-- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  +++ +   NL +    +S+      +A   + S PE    +      E VHS ++ 
Sbjct: 82  -LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYT 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA----------- 181
           +II ++  D  ++F+       I  +A    +        +   G  ++           
Sbjct: 141 HIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQEWGAGNSWEHALEEVDSA 200

Query: 182 ------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                  +  L        + EG+ FY  FA   + G    M G A+    I RDES H+
Sbjct: 201 KWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHM 260

Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++IN+ K  ++P +     Q++     M  +    EI +A      G  +GLNA  
Sbjct: 261 TITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEIIWADYLFRDGSMIGLNAKL 320

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
            ++Y+++ ANRR   IG++ +F    + NP PW    +  K  +    ET V  Y  G 
Sbjct: 321 LQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPWTEHWLSSKGLQVAPQETEVESYVIGG 379


>gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis]
 gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis]
          Length = 224

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 26/243 (10%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y     + W   E+ +  D+  W +   L +DE+  
Sbjct: 5   EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNT--KLNEDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E    F+     P+I  KA WAL++ ++               +   +  + +   EG
Sbjct: 123 EVEKDKLFHAIEVFPAIKRKAEWALKWIES---------------DSFAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHI------HNHHLINKVPK 221

Query: 259 QKS 261
           ++ 
Sbjct: 222 ERI 224


>gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum R]
 gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 334

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNDVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L    +  + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y              + D    + +    V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+ +      +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333


>gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 319

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDVAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
 gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
          Length = 329

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 6/309 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    E Y       W P E+ +Q D+  +KS   LT  E+ +   ++G+FASSE LV 
Sbjct: 23  RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ +  +D   ++N+  E   +  
Sbjct: 80  NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EGM+FY+ FA   ++    KM
Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  I  ENP +   E F +  +  + +A  LE+ Y 
Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P FK  +NP  ++ +  D+KK  NF
Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318

Query: 336 FETRVTEYQ 344
           FE   TEY 
Sbjct: 319 FEVSSTEYT 327


>gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 5216-82]
          Length = 319

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+    ++  LT  E+ +  R     
Sbjct: 10  NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P    +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 376

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 142/377 (37%), Gaps = 43/377 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60
            NN  L P+  G+    V                  +    +EK +    +  W P E+ 
Sbjct: 10  KNNQLLEPMFLGQPVNIVR--------------FDQQKHIIFEKLIEKQLSFFWRPEEID 55

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   ++S   L D E+ +   NL +    +S+   +  +A+   +S PE   ++   
Sbjct: 56  ISKDRIDYQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETW 112

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------- 169
           +F E +HS ++ +II ++      +F+       I  +A     Y   L           
Sbjct: 113 SFFETIHSRSYTHIIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLTNYYHILG 172

Query: 170 -----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                 + +         ++ L    +   V E + FY  FA   +      M G A+  
Sbjct: 173 PGIHTINKNIVAVNLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLMEGNAKII 232

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETM 280
           ++I RDESLHL+    ++N ++         E    +Q +S  +   A   E  +AH   
Sbjct: 233 RFIARDESLHLSATQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEKMWAHYLF 292

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338
             G  +GLN     QY+++I N R   IGL+  F    N  PW++  +     +    E 
Sbjct: 293 KDGSMIGLNKEILCQYIEYITNIRMQAIGLKAPFHIKANVIPWINSWLVSDNVQVAPQEV 352

Query: 339 RVTEY---QQGAELKWD 352
             + Y   Q   ++  D
Sbjct: 353 ESSSYLVGQINTQINDD 369


>gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum]
 gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 334

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L + E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L    +  + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y              + D    + +    V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+ +      +G      ++++++ AN+  + +G E LF   E   +P    +
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333


>gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 376

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +++   L   E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDLSRDYIDFQN---LPQHEKHIFVSNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++      +F+   +  +I  
Sbjct: 90  RSPNIALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIAN 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201
           +A    +Y   L   +     F  G    +           ++ L    +     E + F
Sbjct: 150 RAKDIAKYYDDLIELTSYWHLFGEGKHTINGKKIKIDLHELKKKLYLCLISVNALEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK----IENPHLWTKEF 257
           Y  FA   +     KM G A+  + I RDE+LHL     ++N +      E     +KE 
Sbjct: 210 YVSFACSFAFAEREKMEGNAKIIRLIARDEALHLTSTQHILNILHNDKNNEGMSDISKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++   +    +  E  +A      G  +GLN     QY+++I N R   IGL   FK  
Sbjct: 270 YEECYHLFIRVSDQEKIWAKYLFQNGSMLGLNQEILSQYIEYITNIRMKAIGLPSPFKIL 329

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 330 SNPIPWINSWL 340


>gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103]
 gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103]
 gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea
           ananatis AJ13355]
          Length = 319

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +DL  W++   L    + +  R     
Sbjct: 10  NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQHQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHTSDVDAAYQ 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L + +                + L+      V  E   FY+GF  
Sbjct: 124 WSEENQALQNKAEIILTHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +  QQ +  +L  
Sbjct: 169 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALEQVDEGRREALQQFAIDLLLA 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+ Y         VG  A   + ++ + AN+    +G E LF       NP    +
Sbjct: 229 LYENEVVYTEALYGD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTQVNPAILSA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 319

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 326

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 6/309 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    E Y       W P E+ +Q D+  +KS   L+  E+ +    +G+FASSE LV 
Sbjct: 20  RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ S  +D   ++N+  E   +  
Sbjct: 77  NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLEDKLLKE 136

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EG++FY+ FA   ++    KM
Sbjct: 137 KQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  +  ENP +    +F +  R  + +A  LE+ Y 
Sbjct: 197 KNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVDDYQFVENIRQSIIDAVELELNYL 256

Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                   + G++    E+YM++IA+RR  ++G +P F   +NP  ++ +  D+KK  NF
Sbjct: 257 KTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315

Query: 336 FETRVTEYQ 344
           FE   TEY 
Sbjct: 316 FEVSSTEYT 324


>gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 336

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 126/324 (38%), Gaps = 24/324 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++S
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS +
Sbjct: 66  ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   S     +  G    D   
Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L    +   V E + FY  FA   +      M G A+  ++I RDE LH
Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242

Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L    +++N I    ++P +    +E +Q++  +   A   E  +A      G  +GLN 
Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313
               +Y+++I N R   +GL   F
Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPF 326


>gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
          Length = 319

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +  EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLDYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6]
 gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 376L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6]
          Length = 360

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 31/349 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P  Y   + K+     +HW+P+EVPM DD+  WK  N L D++R  +     FF 
Sbjct: 7   RNYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWK--NRLNDNQRDFLTNIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +  VA+            PE    +   A  E VH   + Y++ +LG+ E   +  + 
Sbjct: 65  QGDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEA-TYKEFL 123

Query: 151 EVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
               +  K ++  +++ +  +        T +  +     + +F    EGM  ++ FA +
Sbjct: 124 MYEEMKDKQDYIKKFSDSRHILGKGEENLTTEDKEHIAAGIALFSGFTEGMQLFSTFAML 183

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTM 264
           L       M G+ +   + + DE+ H    I++      EN            Q+    +
Sbjct: 184 LIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVYKI 243

Query: 265 LHEATLLEIAYAHETM------------------PKGFVGLNAPSCEQYMQFIANRRCHQ 306
             E   LE A+                        K F GL     + Y+++IA+RR + 
Sbjct: 244 AKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRLNL 303

Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-QGAELKW 351
           +G + +F    Y  NP P +  +I+     NFFE R T+Y     +  W
Sbjct: 304 MGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDYANVSTKGTW 352


>gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-272]
 gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-227]
          Length = 319

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMLDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ +  N+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 23/307 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+ DD   W +   L+ +E+ + ++ L      +++  +  +  +
Sbjct: 24  FWDQNVRQFWVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLL 80

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
            +H+ + + +  +      E +H+ ++  I ++L   E   ELF+  R  P +  K  + 
Sbjct: 81  SQHIESLQAKAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEPVLQEKQTFV 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +                 D++ L       V+ E   FY+GF   L L    +M    E
Sbjct: 141 HRRY-----------LGVQDEQSLYLGLAASVLLESFLFYSGFFYPLLLAGQGRMTSSGE 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++    P    K  ++   +ML     LE  Y+   M  
Sbjct: 190 IINLIIRDESIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSR--MLY 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             +GL   +   + ++ A++    +GLEP F  +    NP   ++ +    K  +FF T+
Sbjct: 248 TPLGLT-EAVVTFSRYNADKALMNLGLEPYFGVSAEAVNPVV-LAGLSTHTKNHDFFSTK 305

Query: 340 VTEYQQG 346
              Y + 
Sbjct: 306 GNGYVKA 312


>gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
 gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
          Length = 381

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 30/314 (9%)

Query: 41  WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
             +EK +    +  W P E+ +  D   +     L   E+ +   NL +    +S+   +
Sbjct: 35  EVFEKLIEKQLSFFWRPEEIDVSRDRIDF---MNLPSHEQHIFISNLKYQTLLDSIQGRS 91

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +A+   +S PE   ++   +F E +HS ++ +I+ +L  D  E+F        I  +A
Sbjct: 92  PNMALLPIVSLPELETWIETWSFSETIHSRSYTHILRNLFTDPSEVFEDIVTNVEIQKRA 151

Query: 160 NWALQYTQTLS---------------------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           +   QY   L                        +    T    ++ L          E 
Sbjct: 152 SDIAQYYDALIHAVQFMQLHGLEQSKIEYLDLDGNPEKLTLRVIKKKLYLCMCSINALEA 211

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + FY  FA   +    + + G A+  + I RDE+LHLN    ++N            E  
Sbjct: 212 IRFYVSFACSFAFAERDLLEGNAKIIKLIARDEALHLNSTQQILNIWADGKDDPEMAEIA 271

Query: 259 QKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +     R +   A   E  +A      G  +GLN     QY+++I+N R   IG E  F
Sbjct: 272 IECHAKGRDIFLTAAAQEKEWAAYLFKDGSMIGLNEVILCQYVEYISNVRMQAIGYEAPF 331

Query: 314 KYTENPFPWMSEVI 327
           +   NP PW++  +
Sbjct: 332 EIKNNPIPWINHWL 345


>gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
 gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 331

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 119/344 (34%), Gaps = 50/344 (14%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   +    W+       N W+P +VP+ +D+  W +   L D E+    R  
Sbjct: 19  GSVNWNEVPDDRDLEVWD---RLTANFWLPEKVPVSNDIQSWAT---LNDAEKNATMRVF 72

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++    +       L   AF E+VH+ ++  I  +L       +
Sbjct: 73  TGLTMLDTIQGTVGAVSLIPEATTMHEEAVLTNIAFMESVHAKSYSQIFMTLASTREIND 132

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E  ++  K    LQY                  +      +  V+ E   FY+G
Sbjct: 133 AFRWSEENENLQRKGEIILQYY---------------KGDDPLKRKIASVLLESFLFYSG 177

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDES+H  +      +          +E +      
Sbjct: 178 FYLPMRWSSMGKLTNTADIIRLIIRDESVHGYYIGYKYQRALENESPERQEELKGFVVEQ 237

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE------- 317
           L +    E+ Y      +  +G      ++++++ AN+  + +G + LF   E       
Sbjct: 238 LLDLYDNEVEYTESIYDE--IGWT-EDVKRFLRYNANKAMNNLGYDGLFPVEETRVSAAI 294

Query: 318 ----NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
               NP           +  +FF    + Y  G      +  WD
Sbjct: 295 LAALNP--------GGDENHDFFSGSGSSYVIGKAETTTDDDWD 330


>gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
 gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
          Length = 318

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 21/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     L+D +R +  + LG     +++     +  I
Sbjct: 19  FWNQNIMQFWTDEEIPLSDDKMSW---IELSDAQRELYMKVLGGLTLLDTIQGGVGIPKI 75

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      E +H+ ++  I T+L   E    +F   +  P +  KA W 
Sbjct: 76  VEHVDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWI 135

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y   +++P           + L       V+ E   FY+GF   L L    KM    E
Sbjct: 136 SVYYNNITTP-----------KSLYLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGE 184

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++  +       E   + R ++      E  Y  E    
Sbjct: 185 IIDLILRDESIHGLYVGVLAQEVYRDLTPEERGEADTELRELIDRLHANEEVYTKELYSG 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +   A     Y+++  N+    +GL+P+F   E NP  + + +    K+ +FF  +  
Sbjct: 245 VGL---ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGN 300

Query: 342 EYQQ 345
            Y +
Sbjct: 301 GYVR 304


>gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 395

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 139/363 (38%), Gaps = 29/363 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +                    V +    KY    +         W P EV +Q D A ++
Sbjct: 22  VFNKNIVDTTKQHMFFGPPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 81

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L  +++ +   NL +    +S+      +A   + S PE    +      E VHS 
Sbjct: 82  Q---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSR 138

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------------SS 171
           ++ +II ++  D   +F+       I  +A                             S
Sbjct: 139 SYTHIIKNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAAHMYDTGNMWKEDWKDS 198

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           P+     KD  ++  + +   Y + EG+ FY  FA   + G    M G A+    I RDE
Sbjct: 199 PTAKWELKDLKRKLYRAVANVY-ILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDE 257

Query: 232 SLHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGL 287
           S H+    +++N+ K  ++P +    +E ++    M ++    E+ +A      G  +GL
Sbjct: 258 SQHMTITQNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEEVIWADYLFRDGSMIGL 317

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQ 344
           NA   ++Y+++ ANRR   IGL+P F    + NP PW    +  +  +    ET V  Y 
Sbjct: 318 NAKLLQKYVEWTANRRMKSIGLKPTFDAPLSNNPLPWTEHWLSSRGLQVAPQETEVESYV 377

Query: 345 QGA 347
            G 
Sbjct: 378 IGG 380


>gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 319

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKMPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +   G      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis]
          Length = 214

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L A ++   LLP+KY   +E Y  A  ++W   EV +  D+  W+    LTDDER 
Sbjct: 1   KEPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWR---KLTDDERH 57

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+     + +  PE R +   Q+  EAVHS  +  ++     
Sbjct: 58  FVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIR 117

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E    F+    +P +  KA WA+++ ++                   +  V Y   E
Sbjct: 118 DPDERDLLFHAVDTIPCVQKKAQWAMKWIES--------------SSCFAERLVAYACVE 163

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           G+ F   F  I  L +   M G+    + I RDE LH +F   +   ++ 
Sbjct: 164 GIHFSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFACHLYELLQN 213


>gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 322

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +DL  W++   L   ++ +  R     
Sbjct: 13  NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 67  TLLDTIQNVIGAPGLMEDALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L++ +                + L+      V  E   FY+GF  
Sbjct: 127 WSEENEALQNKAKIVLEHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E QQ +  +L  
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALENVDDARREELQQFAIELLLA 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y         VG  A   + ++ + AN+    +G E LF     T NP    +
Sbjct: 232 LYENEVVYTEALYAD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 289 LSPNADENHDFFSGSGSSYVMGKAVE 314


>gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus
           brevis NBRC 100599]
 gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus
           brevis NBRC 100599]
          Length = 316

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 117/304 (38%), Gaps = 21/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     L+  ER   K+ LG     +++     +  I
Sbjct: 17  FWNQNIMQFWTDDEIPLSDDKMAW---MELSATERDTYKKVLGGLTLLDTVQGGVGMPKI 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      E +H+ ++  I T+L   E    +F+     P +  KA   
Sbjct: 74  MEHVDGLQRKAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALI 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +  Q +  P           + L    V  V  E   FY+GF   L L    KM    E
Sbjct: 134 SKRYQEIEKP-----------KDLYMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++      +      ++   +LHE    E AY      +
Sbjct: 183 IIDLIVRDESIHGLYVGVLAQEVYQGLSVVEQTAAIEELYALLHELQENEEAYTTSLYTE 242

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +   A     Y+++ AN+    +GL+PLF   E NP   ++ +    K+ +FF  +  
Sbjct: 243 IGL---ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPIV-LNGIRTQTKQHDFFSKKGN 298

Query: 342 EYQQ 345
            Y +
Sbjct: 299 GYVR 302


>gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like
           protein [Dickeya dadantii 3937]
 gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Dickeya dadantii 3937]
          Length = 330

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 115/319 (36%), Gaps = 31/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++ + +D+  W     L+D ER +  R        ++L       A
Sbjct: 32  EVWNRLTTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPA 88

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161
           +      P     L    F EAVH+ ++  I ++L L  +  + ++       +  KA  
Sbjct: 89  LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTSEVDDAYSWSERNQPLQNKAAL 148

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L + Q                +      +  V  E   FY+GF   +      ++   A
Sbjct: 149 ILSHYQ---------------HDDPLKKKIASVFLESFLFYSGFYLPMYWASRGQLTNTA 193

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      Q          ++ Q  +  +L      E+ Y HE   
Sbjct: 194 DLIRLIIRDEAVHGYYIGYKYQQGLKRVGTQQQRDLQAFAYDLLQTLYDNEVDYTHELYD 253

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
              VG +    + ++ + AN+    +G E LF       NP    +     ++  +FF  
Sbjct: 254 D--VGWSDDVVK-FLHYNANKALMNLGYEALFPAGMTDVNPAILAALSPGAEENHDFFSG 310

Query: 339 RVTEYQQGAEL-----KWD 352
             + Y  G  +      WD
Sbjct: 311 AGSSYVIGKAVETEDEDWD 329


>gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas
           ingrahamii 37]
 gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychromonas ingrahamii 37]
          Length = 381

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 29/306 (9%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
              +  W P E+ +  D   +     L D E+ +   NL +    +S+   +  +A+   
Sbjct: 43  KQLSFFWRPEEIDVSRDRIDF---LNLPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPI 99

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
           +S PE   ++   +F E +HS ++ +I+ +L  +  E+F        I  +A     Y  
Sbjct: 100 VSLPELETWIETWSFSETIHSRSYTHILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYD 159

Query: 168 TLSSPSFTTGTKDADQ---------------------EFLQDLFVFYVVFEGMWFYTGFA 206
            L   +        +Q                     + L          E + FY  FA
Sbjct: 160 ALIHATQFMQLHGLEQTDIDYINLENQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFA 219

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSR 262
              +    + + G A+  + I RDE+LHLN    ++N      ++P +     E   + R
Sbjct: 220 CSFAFAERDLLEGNAKIIKLIARDEALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGR 279

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            +  +A   E  +A      G  +GLN     QY+++IAN R   IG  P F+   NP P
Sbjct: 280 EIFLQAAQQEKDWAKYLFKDGSMIGLNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIP 339

Query: 322 WMSEVI 327
           W++  +
Sbjct: 340 WINNWL 345


>gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate
           division TM7 single-cell isolate TM7c]
          Length = 277

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 3/265 (1%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D  QL P++Y WA+  Y  A  N W P EV +  DLA +K    LT+DE+  +K  + + 
Sbjct: 16  DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---KLTEDEKNALKTVISYL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
             +E L+  ++   IY  ++  EC  YL +Q +EEA H  TF+YII +   +  E++   
Sbjct: 73  NPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAG 132

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S+  KA +  +Y   +        T +  ++F+++L  + +V EG+WFY+GF   +
Sbjct: 133 WGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGM 192

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           S  R N +  +     ++ RDE+LHL FGI+++  I  ENP L   EF  + R ++ +A 
Sbjct: 193 SFRRRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAV 252

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQ 294
            LE AY  + +P G +GLNA    Q
Sbjct: 253 ELEEAYNRDMLPNGILGLNADYVNQ 277


>gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
 gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
          Length = 320

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 114/312 (36%), Gaps = 26/312 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++ + +D+  W     LTD ER +  R        ++L       A
Sbjct: 22  EVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQLTLRVFTGLTLLDTLQNTQGAPA 78

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +      P     L    F EAVH+ ++  I ++L L       ++       + +KA  
Sbjct: 79  LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTNEVDCAYHWSEHNKPLQSKAAL 138

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L   +              DQ   + +    V  E   FY+GF   +      ++   A
Sbjct: 139 ILSLYRH-------------DQPLKKKI--ASVFLESFLFYSGFYLPMYWASRGRLTNTA 183

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      Q          ++ Q  +  +L      E+ Y HE   
Sbjct: 184 DLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPEQRDLQLFAYELLQTLYDNEVDYTHELY- 242

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
              VG +    + ++ + AN+    +G E LF       NP    +     ++  +FF  
Sbjct: 243 -DSVGWSGDVIK-FLHYNANKALMNLGYEALFPADMTDVNPAILAALSPGAEENHDFFSG 300

Query: 339 RVTEYQQGAELK 350
             + Y  G  ++
Sbjct: 301 AGSSYVIGKAVE 312


>gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecium DO]
 gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
 gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
          Length = 321

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 126/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W++ + L   E+  +    G  
Sbjct: 10  NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSQL---EKDTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ + + +  + + +  P     L    F E+VH+ ++  I ++L    +  E+F+
Sbjct: 64  TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA           +  +  GT    +       +  V  E   FY+GF  
Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKHGTPLEKK-------IASVFLETFLFYSGFYT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    +  +     +L+E
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETLKDWMYNLLYE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+
Sbjct: 229 LYENEERYTEELY--DPIGWT-EEVKTFLRYNANKALMNLGMDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTGTSNHDFFSQVGNGY 303


>gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 329

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    LT  ER    + L      ++   N  + AI
Sbjct: 26  FYDQNVKQFWLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAI 82

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E    +F   +E   +  KA  
Sbjct: 83  MAHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPSETITAVFEWVKENRYLQRKAKL 142

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                + +         K  D   L    V  V  E   FY+GF   L      +M+   
Sbjct: 143 ITDLYRDI---------KAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSG 193

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I          +  + S  +L E    E+AY  +   
Sbjct: 194 EIINLIIRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVYG 253

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340
              +   A   + ++++ AN+    +G +  F     NP   ++ +    K  +FF  + 
Sbjct: 254 AVGL---AHDVKAFVRYNANKALMNLGFDAHFPDELVNPIV-INGLSTKTKAHDFFSMQG 309

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 310 NGYKKATV 317


>gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
 gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
          Length = 327

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W   + L+ +ER + K+ LG     ++  ANN + ++
Sbjct: 25  FWDQNVKQFWLPEEISVSKDVKVW---SELSPEERNLYKKVLGGLTLLDTKQANNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+L    +  E+F      P++  KA   
Sbjct: 82  MSLTDNLQRKAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +              D+  L       V  E   FY+GF   L L    KM+   E
Sbjct: 142 LAQYEN-----------TDDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I  +      KE++ K   +       EI Y +     
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTNTIYEG 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +   A     ++++ ANR    +G +   +    NP   ++ +    K  +FF T+  
Sbjct: 251 TGL---ADEVINFLKYNANRAMENLGYDNRLEVDPVNPIV-LNGLSTETKTHDFFSTKGN 306

Query: 342 EYQQG 346
            YQ+G
Sbjct: 307 GYQKG 311


>gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 316

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 117/324 (36%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N++   K    W       +N W+P ++P+ +D+  W++   L++ E+    R     
Sbjct: 7   DWNRIEDDKDLEVWN---RLTSNFWLPEKIPLSNDVQSWRT---LSEVEQATTMRVFAGL 60

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +      + R    P          F E+VH+ ++  I  +L       + F 
Sbjct: 61  TYLDTIQSAIGAPVLARDAVTPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFR 120

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  K +  + + +                +         V+ E   FY+GF  
Sbjct: 121 WVEEDPNMIYKRDRVISFYE---------------GDDPLRRKAASVILETFLFYSGFYL 165

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     +K+   A+  + I+RDE +H  +                 +  + +   +L +
Sbjct: 166 PLKWASHSKLTNTADIIRLIIRDEVVHGYYIGYKYQVGMAGWSSAEQQAIKDEVFDLLLD 225

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               E AY      +  +G      ++++++ AN+  + +G E +F   E    P    S
Sbjct: 226 LYDNECAYTETLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGVFPQDECRVSPAILAS 282

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y  G  
Sbjct: 283 LDPGANENHDFFSGSGSAYTIGTA 306


>gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii
           KSM-K16]
 gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii
           KSM-K16]
          Length = 334

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 121/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P EV +  DL  WK    LT  E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEVALNGDLLTWKY---LTPAEKDTYMKVLAGLTLLDTEQGNTGMPLV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   +LF   +  P +  KAN 
Sbjct: 78  AEHVQGHQRKAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANT 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         K  D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSIYKDI---------KRGDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE  Q +  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +P F+  + NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEDEDINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
          Length = 296

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 115/295 (38%), Gaps = 29/295 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L    +  + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   LQ  +              D+   + +     + E   FY+GF  
Sbjct: 129 WSEENRNLQRKAEIVLQSYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
               E+ Y  +   +  +       ++++++ AN+    +G E LF   E   NP
Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNP 285


>gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont]
          Length = 319

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 117/326 (35%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       NN W+P +VP+ +DL  W+S   L   ++ +  R     
Sbjct: 10  NWNRIQDEKDLEVWN---RLTNNFWLPEKVPLSNDLPAWQS---LAPQQQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTIQNVIGAPGLMEDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYL 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L++ +                + L+      V  E   FY+GF  
Sbjct: 124 WSEENAALQNKAKIVLEHYRA--------------SDPLKKKI-ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E QQ +  +L  
Sbjct: 169 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALETVDDARRAELQQFAIELLLA 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y         VG      + ++ + AN+    +G E L        NP    +
Sbjct: 229 LYENEVVYTEALYAD--VGWT-EEVKTFLHYNANKALMNLGYEALSPAELTAVNPAILSA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 328

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        W+      +N W+P +VP+ +D+  WK    + + E+    +     
Sbjct: 19  NWNEITDQVDKDVWD---RLTSNFWLPEKVPVSNDIPTWK---IMDEAEQWATMQVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      L+I    + P         AF E+VH+ ++  I  +L         FN
Sbjct: 73  TMLDTMQGTVGALSILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFN 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             R+   +  KA+  L + +  +SP                      + E   FY+GF  
Sbjct: 133 WGRQSERLQYKAHRVLDFYKRGNSPMRK---------------AASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L +   +K+   A+  + I+RDE++H  +      Q           E Q K   +L +
Sbjct: 178 PLRMAAHSKLTNTADIIRLIIRDEAVHGYYIGYKYQQQVKHLDQAQQAELQSKVIDLLLD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      +G        ++++ AN+  + +G + ++       NP    S
Sbjct: 238 LMDNEEHYTRDLY--DPLGWT-EDVLAFLRYNANKALNNLGYDGIYPQDMCRFNPGVMTS 294

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y  G  
Sbjct: 295 LNPGADENHDFFSGSGSSYVIGTA 318


>gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 322

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 128/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G  
Sbjct: 10  NWNAIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + +  + + +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 64  TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIDEIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA           +  +  GT    +       +  V  E   FY+GF  
Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKNGTPLEKK-------IASVFLETFLFYSGFYT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    +  +     +L+E
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQQRLKDWMYDLLYE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E      +G      + ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEERYTEELY--DAIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G    +K D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGTVEAMKDD 314


>gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
          Length = 321

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W++ + L   E+  +    G  
Sbjct: 10  NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSPL---EKTTVGYVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + +  + + +  P     L    F E+VH+ ++  I ++L    +  ++F 
Sbjct: 64  TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIADIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA           +  +  GT    +       +  V  E   FY+GF  
Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKNGTPLEKK-------IASVFLETFLFYSGFYT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ +     +L+E
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQQKLKDWMYDLLYE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E   +  +G      + ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEERYTEELYDE--IGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +K D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314


>gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           boydii Sb227]
 gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 3594-74]
          Length = 304

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 119/314 (37%), Gaps = 29/314 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++  +   P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +              D    + +    V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y+ E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYSDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFET 338
              +  +  +FF  
Sbjct: 286 LSPNADENHDFFSG 299


>gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 376

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 138/341 (40%), Gaps = 24/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            + +K   + +        ++ +    KY    +      +  W P E+ +  D   +  
Sbjct: 6   FSKKKNNQLKEPMFFGQSVNIARYDQQKYNIFEKLIEKQLSFFWRPEEIDLSKDRIDF-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + L  +E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS +
Sbjct: 64  -DNLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEF 185
           + +II ++  +   +F+      +I  +A     Y   L   +        G    +++ 
Sbjct: 123 YTHIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRITAYWHLLGEGNHKINEKK 182

Query: 186 LQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           ++              +   V E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VEINLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N +  E  +   K    E ++++  +   A+  E  +A      G  +GLN 
Sbjct: 243 LTGTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQEKKWAKYLFQDGSMLGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
               QY+++I N R H IG +  F+ T NP PW++  ++  
Sbjct: 303 DILCQYIEYITNIRMHAIGFKMPFEKTSNPIPWINSWLNSD 343


>gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC 49946]
 gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora CFBP1430]
          Length = 319

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W   N L+ DE+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   + AKA   LQ+                  + L+      V  E   FY+GF   + 
Sbjct: 127 DNAPLQAKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTDALYSG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318


>gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 241

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 26/226 (11%)

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           +  +  +I     D  E    F     +P +  KA+WAL++  +               +
Sbjct: 23  AEMYSLLIDQYVKDPAEKSHLFRAIETIPCVKKKADWALKWIDS--------------SD 68

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   +   
Sbjct: 69  SFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYQM 128

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                  L  K  ++  R ++ EA  +E  +  +++P   VG+NA     Y++++A+   
Sbjct: 129 -------LNNKPDEEVVRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLF 181

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G+   +  T NPF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 182 TSLGMPKEYN-TANPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 225


>gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-66c26]
 gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CIP 107932]
 gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-76w55]
 gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-97b34]
 gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-37x79]
 gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile CD196]
 gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile R20291]
 gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CD196]
 gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile R20291]
          Length = 323

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +              +QE L    V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  K  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +         ++++ ANR    +G E L+     NP   ++ +    K  +FF T+  
Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306

Query: 342 EYQQG 346
            YQ+G
Sbjct: 307 GYQKG 311


>gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus
           SAFR-032]
 gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus
           SAFR-032]
 gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 326

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 123/314 (39%), Gaps = 22/314 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L + ER    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEISLNGDLLTWKY---LGEKERDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +++            D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSLYRSIQKD---------DPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE    S  +L+E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G  P F+  E NP   ++ +    K  +FF  + 
Sbjct: 249 QVNLS---HDVKKFIRYNANKALMNLGFAPYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE--LKWD 352
             Y++     LK D
Sbjct: 305 NGYKKATVEPLKDD 318


>gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile 630]
 gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-63q42]
 gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile ATCC 43255]
 gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Clostridium difficile]
          Length = 323

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +              +QE L    V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  +  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +         ++++ ANR    +G E L+     NP   ++ +    K  +FF T+  
Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306

Query: 342 EYQQG 346
            YQ+G
Sbjct: 307 GYQKG 311


>gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-23m63]
 gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
 gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
          Length = 323

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W   N L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L  +    ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +              +QE L    V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  +  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +         ++++ ANR    +G E L+     NP   ++ +    K  +FF T+  
Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306

Query: 342 EYQQG 346
            YQ+G
Sbjct: 307 GYQKG 311


>gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus
           nasoniae]
          Length = 321

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 125/326 (38%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W K      N W+P ++P+ +D+  W   N LT +E+ +  R     
Sbjct: 12  NWNRIEDDKDLEVWNKL---TTNFWLPEKIPLSNDIPTW---NTLTKEEKKLTIRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++  N    A+      P     +   +F EAVH+ ++  I ++L L  D  + + 
Sbjct: 66  TLLDTIQNNVGAPALMTDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQ 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L++                         +  V  E   FY+GF  
Sbjct: 126 WSEENSALQKKAHLILEHYCN---------------THPLKKKIASVFLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +  I+       E +  +  +L  
Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLIKYSDKEKDEIKDFAYLLLLN 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               EI Y+     +  VG      ++++ + AN+    +G E LF  T    +P    +
Sbjct: 231 LYENEIKYSESLYDE--VGWT-EDVKKFLHYNANKALMNLGYESLFPETMTDVSPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  + 
Sbjct: 288 LSPNANENHDFFSGSGSSYIIGKTIT 313


>gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 319

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W   N ++ DE+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   + AKA   LQ+                  + L+      V  E   FY+GF   + 
Sbjct: 127 DNAPLQAKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTDALYSG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318


>gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 328

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 129/347 (37%), Gaps = 35/347 (10%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            VN  +        + N +        W+       N W+P ++P+ +D+  W++   +T
Sbjct: 6   PVNAINNDAPLEGINWNDIGDSIDNDIWD---RLTTNFWLPEKIPVSNDVQSWRN---MT 59

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+    +        ++L      +++  H   P+        AF E+VH+ ++  I 
Sbjct: 60  AQEQDATLKVFTGLTVLDTLQGTVGAVSLIPHAVTPQEEAVYTNIAFMESVHAKSYSNIF 119

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            +L       E F   RE   +  KA   L    +                  + +FV  
Sbjct: 120 MTLASTPEIDEAFRWARENEHMQYKARKILSEYAS---------------GEPEKMFVAS 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ E   FY+GF   L +    K+   A+  + I+RDE++H  + I    Q  ++N    
Sbjct: 165 VMLESFLFYSGFYLPLRMASTGKITNAADIIRLIIRDEAIHG-YYIGYKYQNYLKNDKAR 223

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               Q +   +L +    E  +      +  +G      + ++++ AN+  + +G E +F
Sbjct: 224 HAANQDEIVDLLLDLYDNESHFTEAVYDQ--IGWT-EDVKAFLRYNANKAMNNLGYEAIF 280

Query: 314 KYTENPFP--WMSEV-IDLKKEKNFFETRVTEYQQG-----AELKWD 352
              E  F    M+ +     +  +FF    + Y  G      +  WD
Sbjct: 281 PQEECKFNAGVMTSLDPSANENHDFFSGSGSSYVIGKAEETTDDDWD 327


>gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E    F+    VP +  KA WAL++               
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E   +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++        K  +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRK-------KLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens
           YS-314]
 gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 339

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 120/319 (37%), Gaps = 30/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           + +     N W+P ++P+ +D+  W   N +++ E L   R        +++      ++
Sbjct: 40  DIWNRLTTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVS 96

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +    +       L   +F E+VH+ ++  I  +L       E F   R    +  KA  
Sbjct: 97  MIPDATTHHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKR 156

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L Y Q  S+P+                 +  V+ E + FY+GF   L +    K+   A
Sbjct: 157 ILDYYQQDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTA 202

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      +               ++  +L +    E+ Y      
Sbjct: 203 DVIRLIIRDEAIHGYYIGYKYQKHIATLSPEKQATNHDEAVELLLDLYDNELEYTRHVYD 262

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEV-IDLKKEKNFFET 338
              +G +      ++++ AN+    +G E +F   +  F    M+ +     +  +FF  
Sbjct: 263 D--LGWS-EDVSAFLRYNANKAMQNLGYESIFPVDQCKFDPGVMTSLDPSSNENHDFFSG 319

Query: 339 RVTEYQQG-----AELKWD 352
             + Y  G     ++  WD
Sbjct: 320 SGSSYVIGDVEATSDEDWD 338


>gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580]
 gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 325

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 119/308 (38%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPLV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYEKI---------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      +E    S  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G E  F+  E NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFEAYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E    F+    VP +  KA WAL++               
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E   +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++ +          ++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRKKLGE-------ERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp.
           Ejp617]
          Length = 319

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W   N L  +++ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA   LQ+                  + L+      V  E   FY+GF   + 
Sbjct: 127 DNAPLQGKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +   L  +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTEALYAG--VGWQ-KDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318


>gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W++   LT DE+  I   L FF +S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E    F+    VP +  KA WAL++               
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E   +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++        K  +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRK-------KLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 319

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSQSGVEAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA    +                       +  V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAEIINEIY---------------LNGNALEKKVASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
 gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
          Length = 374

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 134/320 (41%), Gaps = 20/320 (6%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P  Y WA E      N HW   E+ + DD+  WK    L D E+  I + L  F   + 
Sbjct: 72  KPFHYPWAVELRSLHENMHWTEKEISLADDVTDWK-IGKLLDVEKKFITQILRLFTQLDV 130

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V             N E R  L   A  E  H   +  +  +LGL E + ++ + +   
Sbjct: 131 SVGQLYHNTFIPIFKNNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKYKQ 189

Query: 155 ITAKANWALQY-TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           +T K ++     T T+ + +F+               V  V  EG+  +  F  +L+  R
Sbjct: 190 MTDKTDFMSDMRTDTIGNVAFS--------------LVKAVYNEGVSLFAAFVMLLNFQR 235

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M G+ +  ++ +RDE++H+     +   I  E P + TK+F +   T+  E   LE 
Sbjct: 236 FGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKAVETLQQEVLKLET 295

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+      +  +  L       Y+++I  RR  Q+GL       +NP  W+S +I  +  
Sbjct: 296 AFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTDL-QNPILWVSWLISGRDV 354

Query: 333 KNFFETRVTEYQQGA-ELKW 351
            NFFE RVTEY  G  E  W
Sbjct: 355 TNFFENRVTEYDVGGLEGDW 374


>gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
 gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
          Length = 374

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 132/342 (38%), Gaps = 22/342 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             I    K  ++     L    ++++   +K+G   +      +  W P EV +  D   
Sbjct: 3   KTIFNKNKVDHLGQPLFLGEDPNISRFETVKHGVFEQLTEKQLSFFWRPEEVDLTLDSQE 62

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +   + + +  + +  +NL + +  +S+      +A     S+     ++    F E +H
Sbjct: 63  F---DRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLENWITTWDFSETIH 119

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--------------SPS 173
           S ++ +I+ +L  +   +F+      SI A+A    ++   L                 +
Sbjct: 120 SRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAETQKLNQLKTMNLDEA 179

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                + A +E L          E + FY  FA   +      M G A+  + I RDE L
Sbjct: 180 HILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIMEGNAKVMKLIARDEQL 239

Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKGFVG-LN 288
           HL     +I+  +         E     Q ++  +  +    E  +AH    +G V  LN
Sbjct: 240 HLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKEWAHSLFSQGTVPGLN 299

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           A    +Y++++A+ R   +GL   +   ++P PW+ + ++  
Sbjct: 300 AQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWIRKWLNSD 341


>gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
 gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
          Length = 328

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  ADHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   Q++         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYQSI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  + P     E ++ S  +L +    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +  F+  E NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDSYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
 gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
          Length = 321

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++    G  
Sbjct: 10  NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSEPEKQLVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L + + +  + +    P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 64  TLLDTLQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P + AKA           +  +  GT    +       +  V  E   FY+GF  
Sbjct: 124 WTNTNPYLQAKAEKI--------NEIYKHGTPLQKK-------IASVFLETFLFYSGFYT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +            P     E +     +L E
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFQALPEAEQAELKDWMYGLLFE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E    G +G  A   + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 229 LYENEENYTDELY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTGTSNHDFFSQVGNGY 303


>gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small
           chain [Hydra magnipapillata]
          Length = 363

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 150/353 (42%), Gaps = 37/353 (10%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPM 61
           +  L    A +++    ++ +LN       + P+  K+   W+ Y    + +W   E+  
Sbjct: 21  SRLLLEYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDF 80

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D   +   +    + +  IKR L FFA ++S+V  NI   + + ++  E       Q 
Sbjct: 81  SNDRHDFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQ 136

Query: 122 FEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E  HS  +  ++  +  D     EL N ++ V SI     WA ++  +     ++   
Sbjct: 137 MMEDTHSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS--- 193

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHL 235
                       V + +FEG+ F   FA I  L +    + M G+ +    I +DE +H 
Sbjct: 194 -----------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHT 242

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
            FG  +   I         +   ++   ++ EA  +  ++  + +    +G+N      Y
Sbjct: 243 IFGCVIYTFIIY-------RLSFEEICELMKEAVEICKSFTKDAICVDMIGMNVELMYNY 295

Query: 296 MQFIANRRCHQIGLEPLFKYTENP--FPWMSEVIDLKKEKNFFETRVTEYQQG 346
           ++++A+R    +G E +F  T+ P  F +M  +  L K+ NFFE R TEYQ+ 
Sbjct: 296 IEYVADRLMVYLGYEKIF-MTKIPDQFQFMDTIGFLNKD-NFFERRATEYQKA 346


>gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila
           melanogaster]
          Length = 214

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 25/236 (10%)

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156
           +V    + +   E R +   Q   E VHS  +  +I +   D  +    FN    +P++ 
Sbjct: 1   LVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVK 60

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            KA+WAL +               +      +  + +   EG++F   FA I  L +   
Sbjct: 61  RKADWALSWI-------------SSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGL 107

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F + +         HL  +  +++   ++ +A  +E  + 
Sbjct: 108 MPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVAIEQEFL 160

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L  +
Sbjct: 161 TDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLDGK 214


>gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 329

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 123/314 (39%), Gaps = 22/314 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +            D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E +  +  +L+E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +P F+  + NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE--LKWD 352
             Y++     LK D
Sbjct: 305 NGYKKATVEPLKDD 318


>gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
 gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
          Length = 309

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 26/289 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNLIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSWAT---LTAKEQQLTLRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       A+      P         +F EAVH+ ++  I ++L    D  + + 
Sbjct: 68  TLLDTIQNTVGAPALMADALTPHEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             +E  ++  KAN  L +               AD   L  +    V  E   FY+GF  
Sbjct: 128 WSQENHALQKKANLILTHYH-------------ADDPLLMKV--ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A   + I+R E++H  +      +       +  ++ +  +  +LH+
Sbjct: 173 PMYWSSRAKLTNTAHLIRLIIRYEAVHGYYIGYKFQKGLERVDVIRRQQVKNVAFDLLHD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
               E+ Y  +      VG      + ++ + AN+    +G E LF   
Sbjct: 233 LYDNEVCYTQDLYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPR 278


>gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM02]
 gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM03]
 gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-HPM05]
          Length = 348

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 142/359 (39%), Gaps = 30/359 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           L PI       +   +R+     +++  L  +KY WA   +     N W+P    +  D+
Sbjct: 5   LPPIFNPSGDDSPQKRRLFGGNPTNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDI 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             + +   +  + R      L +    +SL    + L +   ++ PE    +  Q  +E 
Sbjct: 65  NNYVT---MPPNMRRAFDGMLSYLTFLDSLQTRVLPL-LMPVITAPEVSICMGEQLSQEQ 120

Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           VHS ++ YII ++        ++ ++RE P +  +  +                  +   
Sbjct: 121 VHSQSYAYIIETVIPTDKRDYIYELWREDPVLLKRCEYIQNLYDRYI--------HEMTM 172

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      V   + EG++F+ GF    ++     M   A+  + I RDE  HL    ++I 
Sbjct: 173 ENYTISMVSDFLLEGIYFFPGFRLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIR 232

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
               E   +W      +   +  +A   EI +       G  G+NA + EQY +++ N R
Sbjct: 233 TGLAEGTLMWD---TDEIIDLFRKAAEYEIEWGLHI-GLGVNGINATTIEQYAKYLCNIR 288

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKKE-----KNFFETRVTEYQQGAEL--KWD 352
              IGL  +F+   Y+ NP+  +        E      NFFE+ V  Y+  A++   WD
Sbjct: 289 ARAIGLPTVFEGRQYSRNPYAHLERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346


>gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 330

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 22/314 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L D E+    + L      ++   N  +  I
Sbjct: 24  FYEQNVKQFWLPEEISLNGDLLTWK---HLGDKEKDTYMKVLAGLTLLDTEQGNTGMPTI 80

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   ELF   +    +  KA  
Sbjct: 81  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEWVKTNRYLQRKAAI 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                  +         +  D   L    V  V  E   FY+GF   L      K++   
Sbjct: 141 IGGLYNAI---------EAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +         +  + +++ E    EIAY  E   
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++  N+    +G  P F+  E NP   ++ +    K  +FF  + 
Sbjct: 252 QVGL---THDVKKFIRYNGNKALSNLGFNPYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 307

Query: 341 TEYQQGAE--LKWD 352
             Y++     LK D
Sbjct: 308 NGYKKATVEPLKDD 321


>gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
 gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
          Length = 296

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 111/290 (38%), Gaps = 26/290 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 19  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                AF E+VH+ ++  I  +L       E F 
Sbjct: 73  TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                D    + +     + E   FY+GF  
Sbjct: 133 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 178 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               EI Y  +      +G      ++++++ AN+  + +G E LF   E
Sbjct: 238 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDE 284


>gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2]
 gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate
           reductase subunit beta; AltName: Full=Ribonucleotide
           reductase small subunit
 gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta]
 gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 329

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 123/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +T+         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE    +  +L E    E+ Y  +   
Sbjct: 189 EIINLIIRDEAIHGVYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +   AP  ++++++ AN+  + +G +  F+  + NP   ++ +    K  +FF T+ 
Sbjct: 249 QVGL---APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV-INGLNTKTKSHDFFSTKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK49]
          Length = 332

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 22  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 76  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 136 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 181 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 241 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 296

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 297 GISTGTSNHDFFSQVGNGY 315


>gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-208]
          Length = 284

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 15/284 (5%)

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
             K    L++ E+      +G  A+ +S     I   I  ++++P         A +E +
Sbjct: 1   DAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVI 59

Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y++ S+    ++  +F + R  P+I  +    +       +        +   E
Sbjct: 60  HNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGE 111

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +   + EG+ FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  
Sbjct: 112 TLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRA 171

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I  ENP L T E  + +      A  LE  ++ E + +G  G++      Y+++ AN+  
Sbjct: 172 ILGENPELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKML 230

Query: 305 HQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
             +G+  L+  +++N   W+    D   + + +FFE R + Y++
Sbjct: 231 GMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274


>gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae]
          Length = 213

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 27/237 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++   WE Y     + W   E+ +  D   W+S   LT  E+  IK  L FFA+S+ +V 
Sbjct: 1   QHADLWEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVL 57

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPS 154
            N+       +  PE R +   Q   E +HS T+  +I     +  E     N    +P+
Sbjct: 58  ENLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPA 117

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA WA+Q+ Q               +    +  V +   EG+ F   F  I  L + 
Sbjct: 118 VAEKAKWAVQWMQR--------------ENSFTERLVAFAAVEGILFSGSFCAIYWLKKR 163

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
             M G+    + I RDE LH +F   +  +++   P            +++  A  +
Sbjct: 164 GLMPGLTFSNELISRDEGLHADFACLIYRKLQNHLPE-------DVVHSIMRGAVEV 213


>gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
 gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct]
 gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
          Length = 329

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 124/314 (39%), Gaps = 22/314 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +            D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +P F+  + NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE--LKWD 352
             Y++     LK D
Sbjct: 305 NGYKKATVEPLKDD 318


>gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1057]
          Length = 319

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNVIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F+
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
 gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
          Length = 319

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
 gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 329

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 122/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHT 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +P F+  + NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens FZB42]
 gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42]
          Length = 329

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 121/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +            D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
           +  +       ++++++ AN+    +G +P F+  + NP   ++ +    K  +FF  + 
Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 305 NGYKKATV 312


>gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
 gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
          Length = 320

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVNALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTDTNPYLQKKAQ--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ +     +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKDWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis V583]
 gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus
           faecalis V583]
 gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterococcus sp. 7L76]
 gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2137]
 gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4000]
 gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0017]
 gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0027]
 gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2141]
 gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4244]
 gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0043]
 gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0312]
 gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0645]
 gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1302]
 gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1341]
 gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1342]
 gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1346]
 gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309B]
 gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0630]
 gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309A]
 gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis OG1RF]
          Length = 321

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P     + +     +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+ +
Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +K D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313


>gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0012]
          Length = 321

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++ + L   E+  +    G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSNL---EKTTVGYVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P     + +     +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+ +
Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +K D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313


>gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
 gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
          Length = 321

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G F
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGF 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P     + +     +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+ +
Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +K D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313


>gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
 gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
          Length = 319

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSQSGVEAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA    +                       +  V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAEIINEIY---------------LNGNALEKKVASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G + LF  T    NP   M+
Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDSLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
 gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
          Length = 321

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 11  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 65  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 125 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 286 GISTGTSNHDFFSQVGNGY 304


>gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 319

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W   N L  +++ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++       A+            +   +F EAVH+ ++  I ++L    D    +    
Sbjct: 67  DTIQNTLGAPALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA   LQ+                  + L+      V  E   FY+GF   + 
Sbjct: 127 DNAPLQGKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +   L  +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTEALYAG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318


>gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 337

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 116/304 (38%), Gaps = 19/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P EVP+  D+  W     LT+ ER++ KR L      ++   N+ + ++
Sbjct: 36  FWDQNVKQFWLPEEVPISKDIPSWA---ELTESERILYKRVLAGLTLLDTKQGNDGIPSM 92

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+L    +  +LF    E P +  KA   
Sbjct: 93  MDLTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKHEIDDLFLWIEEEPLLQNKAKIV 152

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+  + +  P           + L       V  E   FY+GF   L L    KM+   E
Sbjct: 153 LRQYKNVEDP-----------KSLYMSMATSVFLESFLFYSGFFFPLYLAGQGKMIASGE 201

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +   E  +    E +     +L E    E  Y       
Sbjct: 202 IISLILRDESLHGKYIGLLAQEKLREFSYDDRNELKDAVYRLLKELMENEEKYTRMLYEG 261

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +         ++++ AN     +G E  +K        ++ +    K  +FF T+   
Sbjct: 262 LGLE---DQVINFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 318

Query: 343 YQQG 346
           YQ+G
Sbjct: 319 YQKG 322


>gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
 gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
          Length = 319

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 31/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P        Q F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVYNIQ-FMESVHAKSYSSIFSTLNTKSEIEEIFE 121

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 122 WTNTNPYLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 166

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ +     +L+ 
Sbjct: 167 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKDWMYDLLYT 226

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 227 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 282

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 283 GISTGTSNHDFFSQVGNGY 301


>gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
          Length = 321

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 11  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 65  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 125 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 286 GISTGTSNHDFFSQVGNGY 304


>gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
 gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
          Length = 320

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1058]
          Length = 319

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
 gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
          Length = 320

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0031]
          Length = 321

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TFLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P     + +     +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+ +
Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +K D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313


>gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
 gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
          Length = 320

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVNALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTDTNPYLQKKAQ--------IINEIYQNGTPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ +     +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPQDEQEKLKDWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
 gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
          Length = 346

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 31/344 (9%)

Query: 22  KRMLNARSDVNQL----LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            R+ ++ S + Q+     P  Y   ++      + HW+  E  + DD+  W++++  +DD
Sbjct: 1   MRVADSESKLFQVSSTYKPFLYQEFYDLMTKHEDAHWVKQEAELGDDVNDWRNRS--SDD 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L  F   + +VA+N          N E   +L+  A  E +H   +     +
Sbjct: 59  ERSFIKEILTVFTQGDVVVADNYKSIFIPAFKNNEVSNWLVGVAAREVIHQDAYAMANET 118

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            GL    +F  +RE   +  + +                    +  E L    V     E
Sbjct: 119 FGL-PDSMFGRFREYQEMRERNDLMATQYD------------PSMVEGLAMGLVHTTFNE 165

Query: 198 GMWFYTGFAQILSLGR---------ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           G+     FA +L   R           +  G+ +  ++ +RDE +H+     +  ++  E
Sbjct: 166 GVCLMGAFANLLQFNRFDVPGFNGYRGRYKGLTKINKWSLRDEGIHVEGSSLLYRKVMGE 225

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +P L T E +++   +       E  +      K  + +     + Y++++ NRR  Q+G
Sbjct: 226 HPWLMTDEHKKQVYDLARAVVAAEDLFLDLAFKKYQLTMTKDESKAYVRYMMNRRLLQLG 285

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK---NFFETRVTEYQQGAEL 349
            + +F+    P PW+ E++     K   NFFETRV  YQ    L
Sbjct: 286 HKAIFEVQGIPCPWIEEILGGAGGKRDSNFFETRVDNYQASGAL 329


>gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 342

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 145/341 (42%), Gaps = 19/341 (5%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  ++ +    S +     ++    ++ Y     NHW+P+E+PM  D + +     L  +
Sbjct: 13  NKSNRIIEGESSGILNWDDIRLPQMYKLYRVLIGNHWIPSEIPMNVDKSDF---PMLPTN 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
            +   KR +G  A  +S+     V  +  +L++            +E +H+ ++ Y+++S
Sbjct: 70  TQNTFKRIIGLLAVLDSMQTM-FVGDVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSS 128

Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    ++ E+F  ++  P +  +              ++    +    E      V  +V
Sbjct: 129 LVSYTEQLEIFEYWKNDPILLKR--------NLFIRDAYQAFRESPSPETFFKALVADMV 180

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY  FA   +L R  KM+  ++   YI RDE+ H  F  ++  Q+ I+ P L T+
Sbjct: 181 LEGIFFYAAFAFFYNLARDQKMLATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTE 240

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           + +      + EA   E  +A   +  G  G++      Y++ IAN R   +GL   ++ 
Sbjct: 241 QNKTFVYNFMDEAVRHETEWAEYVL-DGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEG 299

Query: 316 TENPFPWMSEVID---LKKEKNFFETRVTEYQQGAEL-KWD 352
             N  PW+    D        + FE +   Y + ++   WD
Sbjct: 300 VSNTMPWIRPFSDEALNDTLTDQFEAKPRTYTKASQDNDWD 340


>gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1087]
          Length = 319

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F+
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis 62]
          Length = 321

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P     + +     +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E      +G      + ++++ AN+    +G++PLF  T    NP   M+ +
Sbjct: 230 ENEEHYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +K D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313


>gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK150]
          Length = 319

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F+
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
 gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
          Length = 321

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 10  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 64  TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA           +  +  G+    +       V  V  E   FY+GF  
Sbjct: 124 WTNTNPYLQKKAEIV--------NEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 229 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTGTSNHDFFSQVGNGY 303


>gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
 gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
          Length = 321

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 11  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 65  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 125 WTNTNPFLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 286 GISTGTSNHDFFSQVGNGY 304


>gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis]
          Length = 197

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 20/204 (9%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V ++ +L    D   + P+KY   WE Y  A  + W   EV +  D   W+    LT DE
Sbjct: 8   VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWE---ALTADE 64

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S 
Sbjct: 65  RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    F+    +P +  KA WAL++                  +      V +  
Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRWIDG--------------GKSFAQRVVAFAC 170

Query: 196 FEGMWFYTGFAQILSLGRANKMVG 219
            EG++F      I  L +   M G
Sbjct: 171 VEGIFFSGVSCSIFWLKKRGLMPG 194


>gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
 gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
          Length = 319

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 318

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +DL  W     +  +E+    R     
Sbjct: 9   NWNAVPDKKDAEIWD---RLTGNFWLPEKIPVSNDLPKW---GLMNAEEQWATMRVFAGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
            + ++L      +++      P     L   AF EAVH+ ++  I  +L         F 
Sbjct: 63  TALDTLQGAVGAISLMPDAVTPHEEAVLCNIAFMEAVHAKSYSNIFMTLSSTPEINRAFR 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  K+    ++              + D   ++       + E   FY+GF  
Sbjct: 123 WAEESETLRYKSTRVREFY-------------EGDNSLMRKA--ASTLLESFLFYSGFYL 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RDE++H  +      Q   +      +  +     ++ +
Sbjct: 168 PLRFASRGYLTNTADVIRLIIRDEAVHGYYIGYKYQQAVKQLNPAQQQGLKDSVFDLVFD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E    P    S
Sbjct: 228 LYDNEITYTEKIY--DALGWT-EDVKRFLRYNANKALNNLGYEGLFPSDECRVDPAILSS 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              D  +  +FF    + Y  G         WD
Sbjct: 285 LAPDANETHDFFSGSGSSYVIGKAEETQDDDWD 317


>gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta
           [Melissococcus plutonius ATCC 35311]
 gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 323

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 120/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  L     WEK        W+ T +P+ +DL  W++   L++ E+       G  
Sbjct: 9   NWNSIEDLIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ + + +  + +    P     L    F E+VH+ ++  I ++L    +  E+FN
Sbjct: 63  TLLDTVQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA           +  +  G     +       V  V  E   FY+GF  
Sbjct: 123 WIDTNQQLQYKAKRV--------NEIYKHGKPLQKK-------VANVFLETFLFYSGFYT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +      +           E +     +L+E
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKNWMYDLLYE 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  E      +G      + ++++ AN+    +G+ PLF  T    NP   M+
Sbjct: 228 LYENEEKYTEELY--DPLGWT-EDVKIFLRYNANKALMNLGMNPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK405]
 gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK678]
 gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK160]
 gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1]
 gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK408]
          Length = 319

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 319

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
 gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
          Length = 320

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
 gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
          Length = 322

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK36]
 gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative
           [Streptococcus sanguinis SK36]
 gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK72]
 gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK115]
 gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK355]
          Length = 319

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis
           str. Illinois]
 gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis
           str. Illinois]
          Length = 330

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 22/311 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+  D  +W+    LT+ E+ +  + L      ++      +  I
Sbjct: 28  FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
              + +   +  L   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  
Sbjct: 86  CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           + Y + +            DQE L    V  V  E   FY+GF  +L L     M+   E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +    
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSP 254

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             +        Q++++ AN+    + LE  +  TE   NP  + + +    K  +FF T+
Sbjct: 255 INL---VGEVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFSTK 310

Query: 340 VTEYQQGAELK 350
              Y +   ++
Sbjct: 311 GNGYIKTTHVE 321


>gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis
           KI3806]
 gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis]
          Length = 330

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 22/311 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+  D  +W+    LT+ E+ +  + L      ++      +  I
Sbjct: 28  FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
              + +   +  L   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  
Sbjct: 86  CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           + Y + +            DQE L    V  V  E   FY+GF  +L L     M+   E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +    
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSP 254

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             +        Q++++ AN+    + LE  +  TE   NP  + + +    K  +FF T+
Sbjct: 255 INL---VGEVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFSTK 310

Query: 340 VTEYQQGAELK 350
              Y +   ++
Sbjct: 311 GNGYIKTTHVE 321


>gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
 gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
          Length = 320

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK353]
          Length = 319

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLSFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 319

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDLEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  +                       V     E   FY+GF  
Sbjct: 123 WTNNNKFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEDYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
 gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
          Length = 320

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 319

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  +                       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEDYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
 gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
          Length = 319

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 9   NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S     N  LQ    + +  +  GT    +       V     E   FY+GF   L
Sbjct: 122 EWTNS-----NEYLQTKAKIINDIYENGTPLQKK-------VASTFLETFLFYSGFFTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E P    + F++    +L+E  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYELY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+ +
Sbjct: 230 ENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 286 STGTSNHDFFSQVGNGY 302


>gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
 gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
          Length = 320

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNVEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK330]
          Length = 319

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P     + ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQNKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 351

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 133/332 (40%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   ++ Y       W   E+    D+  W   + +T DE+ 
Sbjct: 25  DESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWND-DKITKDEKE 83

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              R L  FAS++ +   N+   +      PE + +   Q   + +H   +  +I SL  
Sbjct: 84  YFIRLLALFASND-MDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVK 142

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ +   +F   +++ +I  K  +A  + +            + D  F + L     V  
Sbjct: 143 DDEKRTSMFEEIKDLTNIKEKIEYAKSWFE------------NEDNLFGEKLIAEAAVL- 189

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++  + +  +LS  +   + G       ++RD  LH++F   +         HL  +  
Sbjct: 190 GIFSLSAYVSVLSFQKGGLIPGFVTGVDNMLRDRGLHVDFCCLMY-------AHLKNQID 242

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +  + ++ +A  +E     + +P   V L      Q+++++A+      G E  +  T 
Sbjct: 243 SEIVQKIIVDAVEIEKKSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT- 301

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NP+ +M  V+ L    N     + + Q+ +E 
Sbjct: 302 NPYEFMENVV-LPGNTNSLAKTIADAQKASEF 332


>gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 375

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 25/356 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           + +      + +        ++++    KY           +  W P E+ +  D   ++
Sbjct: 4   VFSKISNDPLKEPMFFGNHVNISRFDQQKYSIFETLTEKQLSFFWRPEEIDISKDRIDYQ 63

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           S   L   E+ +  RNL +    +S+ + +   A    +S PE   ++   +F E +HS 
Sbjct: 64  S---LKLYEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEVENWIETWSFSETIHSR 120

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD-- 182
           ++ YII ++  D   +F+       I  +A     Y   L        +F  G       
Sbjct: 121 SYTYIIRNIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLIRLYQTFGEGIHKIHEK 180

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    ++ L    +     E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 181 KVTVSLRELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELMEGNAKIIKLIARDEAL 240

Query: 234 HLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           H+     +IN ++   E+  +    KE     + +    +  E  +A      G  +GLN
Sbjct: 241 HVTGTQHMINIMQSSKEDKEMIEISKECLMICQKIFLNVSDQEKRWADYLFSNGNLIGLN 300

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
               ++Y+ +I   R   IGL+       NP PW++  +     ++   ET V+ Y
Sbjct: 301 KKILKEYIDYITEVRMRAIGLKKDLIKKINPIPWINAWLSSDNIQSAPQETEVSSY 356


>gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 319

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  +                       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEENYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
 gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
          Length = 319

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 305

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 121/309 (39%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L   E+    + L      ++   N  +  +
Sbjct: 2   FYNQNVKQFWLPEEIALNGDLLTWKY---LGTKEQDTYMKVLAGLTLLDTEQGNTGMPIV 58

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 59  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHT 118

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 119 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSG 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280
           E    I+RDE+LH  +   +  +I  +   +  KE  + +  +L +    E+ Y  +   
Sbjct: 170 EIVNLIIRDEALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLYD 229

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETR 339
           P G         ++++++ AN+  + +G +  F   E NP   ++ +    K  +FF  +
Sbjct: 230 PVGLTH----DVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQK 284

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 285 GNSYRKATA 293


>gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
 gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
          Length = 320

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P     + ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQGKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           fermentum IFO 3956]
 gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 333

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 127/324 (39%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+  +     WEK        W+ T +P+ +DL  W+    L DD +  +    G  
Sbjct: 10  NWNQVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDDDHKWTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 64  TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + +KA                    DA ++ L+      V  E   FY+GF  
Sbjct: 124 WSDSEEYLQSKAVKIGNLY------------LDAQEDPLKKKV-ANVFLETFLFYSGFYT 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ ++     L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310


>gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17570]
          Length = 320

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
 gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 319

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 122/330 (36%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  +                       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 380

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 133/352 (37%), Gaps = 38/352 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           AN+    P+  G   VNV       +R D+      KY    +      +  W P EV +
Sbjct: 10  ANDATKEPMFLGNS-VNV-------SRYDIQ-----KYREFEKLIEKQLSFFWRPEEVDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L D ER +   NL +    +S+   +  + +    S PE   ++   A
Sbjct: 57  SQDRIDYMT--KLADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPELETWIETWA 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS---------- 171
           F E +HS ++ +II  +  D  E+F+       I ++A+        L            
Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMVCAREHLGE 174

Query: 172 -------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                   S   G     Q  L    V     E + FY  FA   + G    + G A+  
Sbjct: 175 DEFERLYASEFDGKPYPMQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNAKIM 234

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEATLLEIAYAHETM 280
           + I RDE+LH      ++  ++     L  K+  ++        + +    E+ +A    
Sbjct: 235 RLIARDEALHCEGTERMLRNMRNGREGLLWKQIAEEEEPFVYQTMLDVAEQEMRWADYLF 294

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330
             G  +GLNA   +QY+++  N    ++ L PLF     +P PWM+  +   
Sbjct: 295 KDGSMIGLNAKILKQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMNSWLFTD 346


>gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 333

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 126/324 (38%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+  +     WEK        W+ T +P+ +DL  W+    L DD +  +    G  
Sbjct: 10  NWNQVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDDDHKWTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 64  TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    DA ++ L+      V  E   FY+GF  
Sbjct: 124 WSDSEEYLQNKAVKIGNLY------------LDAQEDPLKKKV-ANVFLETFLFYSGFYT 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ ++     L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310


>gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 328

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 120/304 (39%), Gaps = 19/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P EVP+  D+  W   + L++ ER++ KR L      ++   N+ + ++
Sbjct: 30  FWDENVKQFWLPEEVPISKDIPSW---SQLSESERVLYKRVLAGLTLLDTKQGNDGIPSM 86

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+L   +   +LF    E P +  KA   
Sbjct: 87  MELTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKQEINDLFVWIEEEPLLQNKAKLV 146

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+  +   +P           + L       V  E   FY+GF   L L    KM+   E
Sbjct: 147 LRQYKNTHTP-----------KGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMISSGE 195

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +   E  +    E ++K  ++L E    E  Y       
Sbjct: 196 IISLILRDESLHGKYIGLLAQEKFNEFHYDDKNELKEKVYSLLKELMENEEKYTKLLYEG 255

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +         ++++ AN     +G E  +K        ++ +    K  +FF T+   
Sbjct: 256 SGLE---EQVINFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 312

Query: 343 YQQG 346
           YQ+G
Sbjct: 313 YQKG 316


>gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Streptococcus pneumoniae GA04375]
          Length = 320

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
          Length = 320

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1056]
 gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1059]
          Length = 319

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  GT    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNSYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae TIGR4]
 gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae
           TIGR4]
 gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 320

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 343

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 124/309 (40%), Gaps = 16/309 (5%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y       W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  + 
Sbjct: 30  YNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVS 86

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
            H+ +P+ +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+   
Sbjct: 87  LHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIIT 146

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            + + L  P       D D + L    V  V  E   FY+GF   L L    ++    E 
Sbjct: 147 GHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEI 199

Query: 224 YQYIMRDESLHL-NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
              I+RDE++H    GI      + +      +E  +++  +L      E+ Y ++    
Sbjct: 200 IALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVY-A 258

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVT 341
                      +++++ AN+    +G +  F     NP    + +    K+ +FF  +  
Sbjct: 259 PLGKDMIEEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVKGN 317

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 318 GYVKAINVE 326


>gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36]
 gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36]
          Length = 352

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 18/308 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            ++   +   N W P E+ M++D  +W   + LT  E+    R     A  +SL    I+
Sbjct: 47  WYDISQTLEANFWRPVEIKMKEDEKMW---DSLTPIEQDTFLRVGTALACLDSLQVKAIL 103

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKA 159
             I R  +N          A +EA H+ ++ YI +SL     + + FN   + P +  + 
Sbjct: 104 EVI-RFTTNSALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRN 162

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L   +  +        ++   + L  + V  +  EG++FY+GFA    L    KM+ 
Sbjct: 163 KLVLDVYEDFA--------ENPSLQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMK 214

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
            +    YI RDE  H  F   +I ++  ENP L T+E  Q     L EA   E  +A E 
Sbjct: 215 SSTMISYIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEI 274

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK---EKNFF 336
           +     GL+    + Y++++AN+R  Q+G++ +++   NP PW+    D      + + F
Sbjct: 275 L-ADIEGLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWIQVFSDEMMEHTKTDQF 333

Query: 337 ETRVTEYQ 344
           E +  +Y 
Sbjct: 334 ENKSRDYS 341


>gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
 gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
          Length = 321

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------IASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
 gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
          Length = 320

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 127/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 10  NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +   +F 
Sbjct: 64  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA         + +  +  G     +       +     E   FY+GF  
Sbjct: 124 WTNKNEFLQKKA--------KIINDIYENGDALQKK-------IASTFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       E +     +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEENYTKSLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +K D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314


>gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05ZYH33]
 gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 98HAH33]
 gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           SC84]
 gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           P1/7]
 gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           BM407]
 gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
 gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33]
 gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33]
 gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis SC84]
 gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis BM407]
 gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis P1/7]
 gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           suis GZ1]
 gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis JS14]
 gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
          Length = 319

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    LT +E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L +   V A+   +  P          F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S     N  LQ    + +  + TGT    +       V  V  E   FY+GF   L
Sbjct: 122 EWTNS-----NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E       + +     +L++  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+ +
Sbjct: 230 ENEEGYTRSLY--DAVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGI 285

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 286 STGTSNHDFFSQVGNGY 302


>gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae R6]
 gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae D39]
 gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae G54]
 gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae JJA]
 gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae P1031]
 gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 70585]
 gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae
           AP200]
 gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 670-6B]
 gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I,
           function unknown [Streptococcus pneumoniae R6]
 gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae D39]
 gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pneumoniae G54]
 gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 70585]
 gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae JJA]
 gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae P1031]
 gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV104]
 gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae OXC141]
 gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV200]
 gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae
           AP200]
 gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 670-6B]
 gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41301]
 gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17545]
 gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41317]
 gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47368]
 gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47901]
          Length = 320

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA    +                 +   L+      V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAEIVNEIY--------------LNGSPLEKKV-ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri DSM 20016]
 gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri JCM 1112]
 gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
 gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
          Length = 339

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +D+  W+    L DD +  +    G  
Sbjct: 16  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   E+F 
Sbjct: 70  TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    D  Q+ L+      V  E   FY+GF  
Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ +      L+E
Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H  +    VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316


>gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae ATCC 700669]
          Length = 320

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 320

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V A+   +  P          F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA    +                 +   L+      V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAEIVNEIY--------------LNGSPLEKKV-ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 342

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 124/309 (40%), Gaps = 16/309 (5%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y       W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  + 
Sbjct: 29  YNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVS 85

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
            H+ +P+ +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+   
Sbjct: 86  LHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIIT 145

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            + + L  P       D D + L    V  V  E   FY+GF   L L    ++    E 
Sbjct: 146 GHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEI 198

Query: 224 YQYIMRDESLHL-NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
              I+RDE++H    GI      + +      +E  +++  +L      E+ Y ++    
Sbjct: 199 IALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVY-A 257

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVT 341
                      +++++ AN+    +G +  F     NP    + +    K+ +FF  +  
Sbjct: 258 PLGKDMIEEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVKGN 316

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 317 GYVKAINVE 325


>gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 251

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 20/230 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN    +PSI  KA WA ++               A         V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK 238


>gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05HAS68]
          Length = 320

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    LT +E+ ++ +  G  
Sbjct: 10  NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L +   V A+   +  P          F E+VH+ ++  I ++L   + E+ +++
Sbjct: 64  TLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 122

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S     N  LQ    + +  + TGT    +       V  V  E   FY+GF   L
Sbjct: 123 EWTNS-----NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPL 170

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E       + +     +L++  
Sbjct: 171 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLY 230

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+ +
Sbjct: 231 ENEEGYTRSLY--DAVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGI 286

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 287 STGTSNHDFFSQVGNGY 303


>gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           uberis 0140J]
 gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus uberis 0140J]
          Length = 319

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 120/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                     A+ + LQ         E   FY+GF  
Sbjct: 123 WTNNNEFLQKKAKIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEEYTKTLY--DPVGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
 gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
          Length = 339

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +D+  W+    L DD +  +    G  
Sbjct: 16  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   E+F 
Sbjct: 70  TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    D  Q+ L+      V  E   FY+GF  
Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ +      L+E
Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H  +    VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316


>gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
 gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
          Length = 339

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +D+  W+    L DD +  +    G  
Sbjct: 16  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   E+F 
Sbjct: 70  TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    D  Q+ L+      V  E   FY+GF  
Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ +      L+E
Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H  +    VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316


>gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes M1 GAS]
 gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit
           [Streptococcus pyogenes SSI-1]
 gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
 gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 319

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                     A+ + LQ         E   FY+GF  
Sbjct: 123 WTNNNEFLQEKARIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
 gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
          Length = 376

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 131/344 (38%), Gaps = 24/344 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S +       + +         +V +   +K    ++      +  W PTE+ M  D   
Sbjct: 3   STVFNTNIVDHTNQHMFFGEEPNVQRFDTMKTRVFYDLMDRQLSFFWRPTEIDMSKDSIQ 62

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE-AV 126
           +     L+D  + +  +NL   +  +S+      L +  H+S+     ++      E  +
Sbjct: 63  FHQ---LSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTLENFITAWTMVEGTI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--------------SP 172
           HS ++ +++ ++  +  E+F+     P I  +A    +Y   +                 
Sbjct: 120 HSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLESDKLSAMKFLNLDE 179

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
           S         +E L          E + FY  F    S       M G A+  ++I RDE
Sbjct: 180 SVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTMEGSAKIMKFIARDE 239

Query: 232 SLHLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG- 286
           +LHL     +I++ +   ++P +    K  + K+ ++  E    E  +A   M    +  
Sbjct: 240 NLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEKEWAEYLMGDKSLNG 299

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LN      Y++++A+ R    GL   +   +NP PW+++ ++  
Sbjct: 300 LNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTKWLNSD 343


>gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
 gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
          Length = 319

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 9   NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  GT    +       V     E   FY+GF  
Sbjct: 123 WTNSNEYLQTKA--------KIINDIYENGTPLQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
          Length = 320

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 10  NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 64  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                     A+ + LQ         E   FY+GF  
Sbjct: 124 WTNNNEFLQEKARIINNIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 314


>gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni
           PSU-1]
 gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
 gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Oenococcus oeni PSU-1]
 gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
          Length = 337

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 27/328 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           DK+      D      +        +       W+ T +P+ +D+  W+S   L   E  
Sbjct: 3   DKKNQFTHYDAINWNKVIDPIDKATWEKLTEQFWLDTRIPISNDMKDWRS---LGPVEHK 59

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +     G     ++L + + + ++      P  R  L    F E+VH+ ++  I  +L  
Sbjct: 60  LYDHVFGGLTMLDTLQSQDGMASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDT 119

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                E+F+   +   +  KAN                     D + L+      V  E 
Sbjct: 120 PAEIDEIFDWASKNEQLQYKANKINSVYH--------------DPDPLKRKI-ASVFLET 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
             FY+GF   L     NKM  +AE  + I+RDES+H  +          E      K+  
Sbjct: 165 FLFYSGFYTPLYFVGHNKMANVAEIIKLIIRDESVHGTYIGYKFQLAYKELTEQEQKDLN 224

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KY 315
             +  +L++    E  Y H+   +  +         ++++  N+    +GLEP+F     
Sbjct: 225 SWAYDLLYDLYDNEEKYTHQLYDE--IDW-FDDVMIFLRYNGNKALMNLGLEPMFADGAE 281

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEY 343
             NP   M+ +       +FF      Y
Sbjct: 282 DVNPVV-MNGISTSTANHDFFSQVGNGY 308


>gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 363

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W+    L+  E+ M+ +  G  
Sbjct: 10  NWNDIEDVIDKLTWEKL---TEQFWLDTRIPVSNDLDDWR---RLSKAEQDMVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +    + +         R  L    F E+VH+ ++  I  +L  +     +F 
Sbjct: 64  TLLDTVQSEQGAIVLLPDARTSHERSVLSNIHFMESVHAKSYSTIFITLNTNAEIDAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  I  K++   +  Q        TGT    +          V+ E   FY+GF  
Sbjct: 124 WTDTHELIQFKSDKINRIYQ--------TGTPLQKK-------AASVLLESFLFYSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +                 +E +Q    +  E
Sbjct: 169 PLWYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYSNEEKYTSYIYDE--LGWT-EEVNTFVRYNANKALQNLGFDPLFADTAEDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTGTSNHDFFSQVGNGY 303


>gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 319

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQEKA--------RIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 320

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 10  NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +   +F 
Sbjct: 64  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 124 WTNSNDCLQKKA--------KIINDIYENGDALQKK-------VASTFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E        F++    +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   ++ D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes MGAS8232]
 gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
 gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
 gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
 gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 319

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                     A+ + LQ         E   FY+GF  
Sbjct: 123 WTNNNEFLQEKARIINNIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +  D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 319

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 122/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSEAEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V AI   +        L    F E+VH+ ++  I ++L    +  E+F+
Sbjct: 63  TLLDTMQSQTGVEAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 123 WTNNNEYLQKKAE--------IINEIYLHGGALQKK-------VASTFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 168 PLYYLGNNKLSNVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEELYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 327

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     W+K        W+ T VP+ +D+  W     L+D E+ +I +  G  
Sbjct: 11  NWNKIDDVIDQATWKKL---TEQFWLDTRVPVGNDVNDWA---KLSDMEQDLINKVFGGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + V ++   +        L   AF EAVH+ ++  I ++      E+ N++
Sbjct: 65  TLLDTVQSESGVHSLLDDVRTQHEEAVLNNIAFMEAVHAKSYSTIFSTF-NTPTEIDNIF 123

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             V       N  LQY   + +  +  GT    +          V+ E   FY+GF   L
Sbjct: 124 EWVA-----TNKRLQYKANIINDIYRNGTPLQKK-------SASVLLESFLFYSGFYTPL 171

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 KMV  AE  + I+RDES+H  +          + P    KE +Q    +  +  
Sbjct: 172 RYLGEAKMVNTAEIIKLIIRDESVHGTYIGYKYQLGFNQLPETEQKEMEQWVIDLAFKLW 231

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y  E   +  +G        ++++  N+    +G+ PLF  T    NP   M+ +
Sbjct: 232 ENETQYTAELYSE--IGWT-KDVNTFLEYNLNKALANLGMNPLFPTTSADVNPIV-MNGI 287

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 288 STTTSNHDFFSQVGNGY 304


>gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
 gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
          Length = 320

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 122/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  GT    +       V     E   FY+GF  
Sbjct: 123 WTNSNKYLQTKA--------KIINDIYENGTPLQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMG 18311]
 gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus CNRZ1066]
 gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMD-9]
 gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus ND03]
          Length = 320

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 9   NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  GT    +       V     E   FY+GF  
Sbjct: 123 WTNSNKYLQTKA--------KIINDIYENGTALQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEKEQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  +    NP   M+
Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mutans UA159]
 gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
 gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus
           mutans UA159]
 gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
          Length = 319

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 118/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAAEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +   +F 
Sbjct: 63  TLLDTMQSQSGVEAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEGIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  +  ++                         E   FY+GF  
Sbjct: 123 WTNNNEYLQKKAKIINEIYENGNALQKKV---------------ASTFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEELYTQTLY--DPVGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05
           cluster bacterium]
          Length = 319

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 23/297 (7%)

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L  +E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS 
Sbjct: 2   DFAKLLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSR 61

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182
           ++ +II ++  + G +F+   +   I  +A    ++   L   +        G    D  
Sbjct: 62  SYTHIIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGK 121

Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +  L    +   + E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 122 NADVDLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 181

Query: 234 HLNFGIDVINQIKIE----NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++      +     KE + +   M  EA   E  +A      G  +GLN
Sbjct: 182 HLTGTQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLN 241

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
           A   +QY+++I N R + +GL+P+F ++  NP PW++  +D    +    ET +T Y
Sbjct: 242 ADILKQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLDSDNVQVAPQETEITSY 298


>gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 318

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 115/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I ++L   E   E+F+       +  KA    
Sbjct: 79  KDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKALKIR 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +    P                  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENNPDP--------------LKKKIASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P    ++ +     +L++    E  Y H  +   
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGFNQLPKTKQEDLKNWLYDLLYKLYANEEKYTH--LLYD 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
             G        ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 243 QTGWT-DDVLVFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
          Length = 319

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +   + AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSETGIEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQEKA--------RIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    + F+     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 337

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 27/328 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           DK+      D      +        +       W+ T +P+ +D+  W+S   +   E  
Sbjct: 3   DKKNQFTHYDAINWNKVIDPIDKATWEKLTEQFWLDTRIPISNDMKDWRSLGLV---EHK 59

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +     G     ++L + + + ++      P  R  L    F E+VH+ ++  I  +L  
Sbjct: 60  LYDHVFGGLTMLDTLQSQDGMASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDT 119

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                E+F+   +   +  KAN                     D + L+      V  E 
Sbjct: 120 PAEIDEIFDWASKNEQLQYKANKINSVYH--------------DPDPLKRKI-ASVFLET 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
             FY+GF   L     NKM  +AE  + I+RDES+H  +          E      KE  
Sbjct: 165 FLFYSGFYTPLYFVGHNKMANVAEIIKLIIRDESVHGTYIGYKFQLAYKELTEQEQKELN 224

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KY 315
             +  +L++    E  Y H+   +  +         ++++  N+    +GLEP+F     
Sbjct: 225 SWAYDLLYDLYDNEEKYTHQLYDE--IDW-FDDVMIFLRYNGNKALMNLGLEPMFADGAE 281

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEY 343
             NP   M+ +       +FF      Y
Sbjct: 282 DVNPVV-MNGISTSTANHDFFSQVGNGY 308


>gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
 gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
          Length = 255

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 23/215 (10%)

Query: 2   ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
              +   P +  +K +        D+ +L    +   L PLKY   W+ Y  A  + W  
Sbjct: 54  TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS T+  +I +   +  +    F+    +P I  KA+WA+++ +      
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
                 D D  F Q L  F  V EG++F   FA I
Sbjct: 226 ------DKDSTFAQRLVAFAAV-EGIFFSGSFASI 253


>gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 319

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 129/330 (39%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  ++F 
Sbjct: 63  TLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 123 WTNNNEFLQKKA--------KIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E +Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEESYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   ++ D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313


>gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
 gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
          Length = 376

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 117/316 (37%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +      +  W P EV +  D   +   N L++ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPAIDKLTEKQLSFFWRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L +D   +F+       I 
Sbjct: 88  GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIM 147

Query: 157 AKANWALQYTQTLSS--------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
           A+A    QY   L                P          +E L          E + FY
Sbjct: 148 ARATSVTQYYDNLIKELKTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFY 207

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258
             FA   S G    M G A+  + I RDE LHL     +I   +         E     +
Sbjct: 208 VSFACTFSFGERGIMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLE 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
            K+  +  E    E  +A + +    +  L+  S   Y+ ++   R    GL    +   
Sbjct: 268 HKAVQIFLEVAEQEKEWARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNI 327

Query: 317 --ENPFPWMSEVIDLK 330
             ++P PW+ + ++  
Sbjct: 328 GMKHPLPWIRKWLNSD 343


>gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
 gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
          Length = 324

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 131/320 (40%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +E+    D   + S   L+ +E+  IKR+L   A
Sbjct: 7   RINYKPFEYPEVLDFTNAINKSFWVHSEIDFTADTQDFHS--HLSTNEKESIKRSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V  +    +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVNV-KSFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVI 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P I  +  +         S +      D  + +++ L +F ++ E +  ++ FA ILS
Sbjct: 122 EIPVIKKRIAYL--------SNALKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE LH N GI +IN+IK E P    +  +Q+   ++ E+ 
Sbjct: 174 FTRFQGVMKNVSNIIAWTSIDEQLHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESI 233

Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E          G +  +N      +M++  +    QIG + L+  +E   +P  W  E
Sbjct: 234 NIEDEILGWIFENGDLEHINRRDLLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I      +FF  R  EY +
Sbjct: 294 EIFANSLDDFFAKRPVEYTK 313


>gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus Lc 705]
 gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 326

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN         S+                      V  E   FY+GF  
Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ Q     +L++
Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y ++   K            ++++ AN+    +G E  F  T    NP   M+
Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y+ G    ++ D
Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313


>gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus GG]
 gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus GG]
 gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG]
          Length = 326

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN         S+                      V  E   FY+GF  
Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ Q     +L++
Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y ++   K            ++++ AN+    +G E  F  T    NP   M+
Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y+ G    ++ D
Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313


>gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
 gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
          Length = 320

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK +      W  T +P+ +DL  W     L   E+ M+ +  G  
Sbjct: 9   NWNNIEDMIDKLTWEKLVE---QFWTDTRIPVSNDLDDWA---RLPKAEKDMVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+   +             F E++H+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSQDGVQALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKVEIDEIFQ 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                       N  LQ   +  +  +  GT+   +       V  V+ E   FY+GF  
Sbjct: 123 WTNT--------NDLLQIKASTINDIYQNGTELQRK-------VASVMLESFLFYSGFFA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          + P    +E +  +  +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAYNQLPDNEKEEMKNWTYELLFK 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ YA     +  +G      + ++++ AN+    +G +PLF  T N      M+ 
Sbjct: 228 LYQNEVKYAEYLYDE--IGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 139/338 (41%), Gaps = 18/338 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R     KR  N       L P +Y   ++   +  +++W+ TE     D+  +K++  +T
Sbjct: 93  RDEQAQKRKTNIFEKRINLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKTR--IT 150

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D ER  IK  +   +  E  V       IY  +  PE        A  E  H+  + +++
Sbjct: 151 DVERSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEVGAVGATFAESEVRHADAYSHLL 209

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL++   F + ++ P +  +  +           +      + ++E+ + + +F + 
Sbjct: 210 EILGLNKE--FKLLKKKPVMMKRVQYL--------ETALKNAKSEDNKEYSESILLFSLF 259

Query: 196 FEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I++  +   M  GI+   +   ++E +H +FGID+I  IK ENP  + 
Sbjct: 260 IEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAENPEWFD 319

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLF 313
            E     + M  EA   E          G +         ++++   N+    IG+EP+F
Sbjct: 320 AEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVNEFIKDRFNKSLTSIGIEPVF 379

Query: 314 KYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  E       W  + I   K  +FF  R   Y + A+
Sbjct: 380 EVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQ 417


>gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 305

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 26/292 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +                  E L+      V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            EI Y      +   G      + ++ + AN+    +G E LF       NP
Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 280


>gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
 gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
          Length = 402

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 128/354 (36%), Gaps = 36/354 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L+ +       ++D        + V +    K+           +  W P EV +  D  
Sbjct: 13  LTVMNTNPDHNHLDQPMFFGEDTGVARYESQKHKVFESLTQKQLSFFWRPEEVDLSTDRM 72

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L + E+++   NL +    +++      LA     S+     ++   AF E +
Sbjct: 73  QYA---KLPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 129

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF- 185
           HS ++ +I  +L +D    F+      +I  ++    +Y  TL        T    QE  
Sbjct: 130 HSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDECHKLKTIMMLQEQV 189

Query: 186 ---------------------------LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                                      L          E + FY  F+   +     KM 
Sbjct: 190 SGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSFSFTFNFAEQGKME 249

Query: 219 GIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIA 274
           G A+  + I RDE+LH       I   Q+  ++P +    +  ++++  +  E    E  
Sbjct: 250 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMVEISRRLKKEATAIFLEVYEQEKE 309

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +A      G V  ++  S   Y++ + ++R   +GL+  F    NP+PWM++ +
Sbjct: 310 WAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTPIPNPYPWMNKWL 363


>gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis]
 gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
 gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis biovar Microtus str. 91001]
 gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis]
 gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
          Length = 380

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 131/349 (37%), Gaps = 38/349 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           AN+    P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIEKQLSFFWRPEEVDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L + ER +   NL +    +S+   +    +   +S PE   ++   +
Sbjct: 57  TTDRIDFNT--KLQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------- 173
           F E +HS ++ +II  +  D   +F+       I ++A         L   +        
Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGE 174

Query: 174 ---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                       G     Q  L    V     E + FY  FA   + G    + G  +  
Sbjct: 175 DEFERLYVSEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIM 234

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETM 280
           ++I RDE+LH      +I  ++     L  K    E +      + +    E+ +A    
Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLF 294

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVI 327
             G  +GLNA   + Y+++  N    ++GL PLF    ++P  WM++ +
Sbjct: 295 KDGSMIGLNADILKSYVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNKWL 343


>gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 320

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 121/318 (38%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK +      W  T +P+ +DL  W     L  +E+ M+ +  G  
Sbjct: 9   NWNNIEDMIDKLTWEKLVE---QFWTDTRIPLSNDLDDWA---RLPKNEKDMVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L + + V ++ + +             F E++H+ ++  I ++L   L+  E+F 
Sbjct: 63  TLLDTLQSQDGVQSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQ 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA+         +                       V+ E   FY+GF  
Sbjct: 123 WTNTDELLQLKASTINDIYHNGTDLQRKV---------------ASVMLESFLFYSGFFA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          + P    +E +  +  +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLPDDEKEEIKNWTYELLFK 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ YA     +  +G      + ++++ AN+    +G +PLF  T N      M+ 
Sbjct: 228 LYQNEVKYAEYLYDE--IGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302


>gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
 gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
          Length = 386

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 35/329 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P E+ +  D   +     + D E+     NL +    +S+  
Sbjct: 31  RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A    +S+P    +L    F E +HS ++ +I+ +  +D    F+   + P+I  
Sbjct: 88  RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147

Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190
           +A    QY   +                            +  F   TK      +    
Sbjct: 148 RAESIGQYYDDVLYWIRKYENAKEDLRYWEERDDHTALDDARRFFEDTKRDLMASIYLCA 207

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247
                 E + FY  FA   S      + G A+  ++I RDE LHL     +I Q +    
Sbjct: 208 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGAD 267

Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305
            +      +E + ++  +  +    E  +       G +  L+    + Y++++A+ R  
Sbjct: 268 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 327

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
             GL+  F    +P PWM + ++  + +N
Sbjct: 328 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356


>gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 395

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 67/379 (17%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            +   P +Y   + K+     +HW+P EVPM DD+  W   N L D+++  +     FF 
Sbjct: 7   RSYYKPFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDWN--NRLDDNQKKFLTNIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
             +  VA         +    PE   ++   A  EAVH   + ++I +LG+ E   +  +
Sbjct: 65  QGDVDVAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPES-TYREF 123

Query: 150 REVPSITAKANWALQY----TQTLSSPSFTTG---------------------------- 177
            E   +  K ++  ++      +L   SF T                             
Sbjct: 124 LEYHEMKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLL 183

Query: 178 --------------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                          +   +     + +F    EGM  ++ F  +LS      M G+ + 
Sbjct: 184 PAVMLASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQI 243

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPH-----------LWTKEFQQKSRTMLHEATLLE 272
             + + DE+ H +  I +      EN             +     +   + +  E   LE
Sbjct: 244 VSWSIVDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLE 303

Query: 273 IAYA-----HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEV 326
             +           + F+ ++    +QY++FIAN+R   +  +  F   ++NP P    +
Sbjct: 304 DEFINLAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIM 363

Query: 327 IDLKKEKNFFETRVTEYQQ 345
           I+     NFFE R T+Y +
Sbjct: 364 INAPINTNFFENRSTDYAR 382


>gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
 gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
          Length = 320

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 10  NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +   +F 
Sbjct: 64  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 124 WTNSNDYLQKKA--------KIINDIYENGNALQKK-------VASTFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E        F++    +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   ++ D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 145/337 (43%), Gaps = 22/337 (6%)

Query: 21  DKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +KR    ++D+ +    L P +Y   +E   +  +++W+ TE     D+  +K++  L +
Sbjct: 93  NKRTQERKTDIFERRISLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR--LNE 150

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  IK  +   +  E  V  +    ++  +  PE        A  E  H+  + +++ 
Sbjct: 151 VERSAIKNTMLAISQIEVAV-KSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSHLLE 209

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            LGL++   F   ++ P I  +  +           +      D ++E+ + + +F +  
Sbjct: 210 ILGLNKE--FKALKKKPVIMKRVQYL--------ESALRNSKSDDNEEYAEAVLLFSLFI 259

Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           E +  ++ F  I++  +   M  G++   +   ++E +H +FGID+I  +K E+P  +T 
Sbjct: 260 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEWFTP 319

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFK 314
           E+ +  + +  +A   E+        +G +     +   ++++   N+    IG+E +F 
Sbjct: 320 EYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEKVFD 379

Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             E       W  + I   K  +FF  R   Y +  +
Sbjct: 380 VDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSKRTQ 416


>gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 320

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+ +E+ ++ +  G  
Sbjct: 10  NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +   +F 
Sbjct: 64  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 124 WTNSNDYLQKKA--------KIINDIYENGDALQKK-------VASTFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E        F++    +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   ++ D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
 gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
          Length = 388

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 120/329 (36%), Gaps = 35/329 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P E+ +  D   +     + D E+     NL +    +S+  
Sbjct: 33  RHQVFEELIEKSLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A    +S+P    +L    F E +HS ++ +I+ +  +D    F+   + P+I  
Sbjct: 90  RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 149

Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190
           +A    +Y   +                            +  F   TK      +    
Sbjct: 150 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRFFEDTKRDLMASIYLCA 209

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247
                 E + FY  FA   S      + G A+  ++I RDE LHL     +I Q +    
Sbjct: 210 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGVD 269

Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305
            +      +E + ++  +  +    E  +       G +  L+    + Y++++A+ R  
Sbjct: 270 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 329

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
             GL+  F    +P PWM + ++  + +N
Sbjct: 330 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 358


>gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 323

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 120/318 (37%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+  E+ MI +  G  
Sbjct: 13  NWNDIEDMIDKLTWEKL---TEQFWLDTRIPLSNDLDTWRT---LSAREQDMIGKVFGGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++   +             F E+VH+ ++  I ++L   +   ++F 
Sbjct: 67  TLLDTLQSEDGMESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTLNTPKEIDKIFA 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             RE   I  KAN      Q  +                       V  E   FY+GF  
Sbjct: 127 WTRENEFIQYKANRINGIYQNGTDLQRKV---------------ASVFLESFLFYSGFYA 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      K+  +AE  + I+RDES+H  +          +      ++ Q  + ++L E
Sbjct: 172 PLWYLGNGKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLSKEEQEDMQNWAFSLLFE 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E  Y+        +G      + ++++ AN+    +G +PLF  T +      M+ 
Sbjct: 232 LYENEAKYSEYIYDD--LGWT-EDVKIFLRYNANKALQNLGFDPLFPDTADDVDPIVMNG 288

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 289 ISTGTSNHDFFSQVGNGY 306


>gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 319

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 127/330 (38%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  ++F 
Sbjct: 63  TLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                     A+ + LQ         E   FY+GF  
Sbjct: 123 WTNNNEFLQKKAKIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      + F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEENYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   ++ D
Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313


>gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
 gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
          Length = 326

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN         S+                      V  E   FY+GF  
Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ Q     +L++
Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPAAEQQQLQDWMYDLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y ++   K            ++++ AN+    +G E  F  T    NP   M+
Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y+ G    ++ D
Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313


>gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 347

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 129/336 (38%), Gaps = 15/336 (4%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +RM +  S +     +     +E         W+P EV M  D   W +   + + E+ +
Sbjct: 20  ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
               +G  A  +S+      +A Y ++ +   +  +   A  E +H+ ++ YI++S+   
Sbjct: 78  FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSS- 135

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
                           K N  +     L    F    ++   E      V     EG+ F
Sbjct: 136 -----KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             GF       R  KM G     QYI RDE  H  F   ++  I  + P L T+EF +  
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
                E   LE  +  E + K    ++    ++Y+ + AN     +GL+ +F   +NP P
Sbjct: 251 YDFFTELVQLEREF-CEDLYKNTPDIDIEEVKEYIGYRANLILDNLGLDQIFSAKKNPMP 309

Query: 322 WMSEV---IDLKKEKNFFETRVTEYQQGAEL--KWD 352
           W++          +++FFE +   Y +  E    WD
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKNDWD 345


>gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
 gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
          Length = 386

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 119/329 (36%), Gaps = 35/329 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P E+ +  D   +     + D E+     NL +    +S+  
Sbjct: 31  RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A    +S+P    +L    F E +HS ++ +I+ +  +D    F+   + P+I  
Sbjct: 88  RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147

Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190
           +A    +Y   +                            +  F   TK      +    
Sbjct: 148 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRFFEDTKRDLMASIYLCA 207

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247
                 E + FY  FA   S      + G A+  ++I RDE LHL     +I Q +    
Sbjct: 208 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGVD 267

Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305
            +      +E + ++  +  +    E  +       G +  L+    + Y++++A+ R  
Sbjct: 268 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 327

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
             GL+  F    +P PWM + ++  + +N
Sbjct: 328 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356


>gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
 gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
          Length = 347

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 13/334 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +RM +  S +     +     +E         W+P EV M  D   W +   + + E+ +
Sbjct: 20  ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
               +G  A  +S+      +A Y ++ +   +  +   A  E +H+ ++ YI++S+   
Sbjct: 78  FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSS- 135

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
                           K N  +     L    F    ++   E      V     EG+ F
Sbjct: 136 -----KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             GF       R  KM G     QYI RDE  H  F   ++  I  + P L T+EF +  
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
                E   LE  +  E + K    ++    ++Y+ + AN     +GL+ +F   +NP P
Sbjct: 251 YDFFTELVQLEREF-CEDLYKNTPDIDIEEVKEYIGYRANLILDNLGLDQIFAAKKNPMP 309

Query: 322 WMSEV---IDLKKEKNFFETRVTEYQQGAELKWD 352
           W++          +++FFE +   Y +  E K D
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKND 343


>gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 320

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                  L +  N W+ T++P+ DDL        L   ER   +    F ++++ LV  N
Sbjct: 27  PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +   +    +  +   Y + Q   E  HS  +  I   L  ++      Y          
Sbjct: 84  L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  + + Q           K  + + + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H N    + N         + K    +   +  EA  +E  +    
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGG----FEKPAPTRIYALFSEAVNIECEFLLSH 248

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            PK    L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R
Sbjct: 249 APKSSHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308

Query: 340 VTEYQ 344
            T Y 
Sbjct: 309 STAYS 313


>gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4]
 gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4]
          Length = 320

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                  L +  N W+ T++P+ DDL        L   ER   +    F ++++ LV  N
Sbjct: 27  PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +   +    +  +   Y + Q   E  HS  +  I   L  ++      Y          
Sbjct: 84  L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  + + Q           K  + + + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H N    + N         + K    +   +  EA  +E  +    
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGG----FEKPAPTRIYALFSEAVNIECEFLLSH 248

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            PK    L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R
Sbjct: 249 APKSTHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308

Query: 340 VTEYQ 344
            T Y 
Sbjct: 309 STAYS 313


>gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
 gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
          Length = 286

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 18/294 (6%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M DD+  W  K   T  E+ ++ +   FF  ++  V +  +         PE    L   
Sbjct: 1   MADDVQDWHHKICST--EKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           A  E +H   + +++ ++G+ E E +  + +   +  K  +                  D
Sbjct: 59  ANMETIHIAAYAHLLDTVGMPETE-YLAFTKYRQMKEKCEYL------------KAFKMD 105

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +  E  + L V+    EG+  +  FA +L+  R NKM G+ +   Y +RDE+LH N    
Sbjct: 106 SPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSITK 165

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFI 299
           +     +EN     K  + + R +       E A+       G V  L A   ++Y+++I
Sbjct: 166 LFRTFLLENDIDKLK-LEAEIREICDAMVHHEDAFIDLAFEMGDVEGLKASEVKEYIRYI 224

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           AN R  Q+G   +++   NP  W+  V++  +  NFFE + TEY + A +  WD
Sbjct: 225 ANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278


>gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 226

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 28/235 (11%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +L  D+ E    FN    +PSI  KA WA ++      
Sbjct: 1   MFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI----- 55

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                    A         V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 56  ---------ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 106

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +   I  +               ++ EA  +E  +  E++P   +G+N   
Sbjct: 107 GLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKL 157

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
             QY++F+A+R    +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 158 MCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210


>gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 318

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+        WEK        W+ T +P+ +DL  W+S   L D+E+ ++    G  
Sbjct: 9   NWNQVEDQIDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++  ++  P     L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTPNEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN      Q  S                       V  E   FY+GF  
Sbjct: 123 WTNTNEYLQYKANKINSIYQNGSPLQQKI---------------ASVFLETFLFYSGFYT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      +E Q     +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELAKAEQEELQNWMYDLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y HE       G        Y+++ AN+    +G   LF  T    NP   ++
Sbjct: 228 LYANEEKYTHEVYDG--TGWT-EEVLTYLRYNANKALMNLGQGALFPDTAEDVNPVV-LN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GMSTSTANHDFFSQVGNGY 302


>gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 319

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 121/317 (38%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +       
Sbjct: 63  TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E        N  LQ    + +  +  G+    +       V     E   FY+GF   L
Sbjct: 117 IEDIFEWTNNNLFLQNKAKIINDIYKNGSALQKK-------VASTYLETFLFYSGFFTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E      +  +     +L++  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDLLYQLY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+ +
Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 286 STGTSNHDFFSQVGNGY 302


>gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
 gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
          Length = 376

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +      +  W P EV +  D+  +   + LT+ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPVIDKLTEKQLSFFWRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L ++  E+F+       I 
Sbjct: 88  GRAPNLTFLPMVSDIALETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIM 147

Query: 157 AKANWALQYTQTLSSPSFT--------------TGTKDADQEFLQDLFVFYVVFEGMWFY 202
            +A    QY   L     T                     +E L          E + FY
Sbjct: 148 KRATAVTQYYDDLIREKRTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVNALEAIRFY 207

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQ 258
             FA   S      M G A+  + I RDE LHL      I   +   ++P +    K  +
Sbjct: 208 VSFACTFSFAERGLMEGNAKIMKLIARDEQLHLKGTQYQIRTWQNGEDDPEMVDIAKRLE 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGL---EPLFK 314
            K+  +  +A   E  +A + + +     L+  S   Y+ ++   R    GL   E L  
Sbjct: 268 SKAVQIFLDAAEQEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELNV 327

Query: 315 YTENPFPWMSEVIDLK 330
            +++P PW+ + ++ +
Sbjct: 328 PSKHPLPWIRKWLNSE 343


>gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 319

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 121/317 (38%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +       
Sbjct: 63  TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E        N  LQ    + +  +  G+    +       V     E   FY+GF   L
Sbjct: 117 IEDIFEWTNNNLFLQNKAKIINDIYENGSALQKK-------VASTYLETFLFYSGFFTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E      +  +     +L++  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+ +
Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 286 STGTSNHDFFSQVGNGY 302


>gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1]
 gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus
           1]
 gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus
           1]
          Length = 355

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 117/309 (37%), Gaps = 27/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL        L++DE+   +    F ++++ LV  N
Sbjct: 63  PDIGNLRSLSIMNRWTETEFVIADDLED---VGKLSEDEKNFYRFLFTFLSAADDLVNLN 119

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSI 155
           I  ++    +  +   Y   Q   EAVHS  +  I   L  ++      Y       P+I
Sbjct: 120 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 178

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K  W  +              + A+   + + ++  ++ EG++F   FA I  L   N
Sbjct: 179 LSKLEWLER--------------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNN 224

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +             K    +  T+  EA  LE  +
Sbjct: 225 LFVVTCQINNLISRDEAIHVEASCCIFKNYLAGP-----KPTTARIHTLFKEAVRLECEF 279

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    +N  +   Y+++ A+R    + + P++   + P  +   ++      NF
Sbjct: 280 LRTAAPRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNF 339

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 340 FERRNTAYS 348


>gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29]
          Length = 376

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +    + +  W P EV +  D   +   + L++ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPAIDKLTERSLSFFWRPEEVDLSKDAIDY---SRLSEQEQYVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L +D   +F+       I 
Sbjct: 88  GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIM 147

Query: 157 AKANWALQYTQTLS--------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
           A+A    QY   L               SP          +E +          E M FY
Sbjct: 148 ARATSVTQYYDDLISELKTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFY 207

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQ 258
             FA   S G    M G A+  + I RDE LHL     +I   +  +         +  +
Sbjct: 208 VSFACTFSFGERGLMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDIARRLE 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
            K+ ++  E    E  +A + +    +  L+      Y+ ++   R   +GL    +   
Sbjct: 268 SKAVSIFIEVAEQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNV 327

Query: 317 --ENPFPWMSEVIDLK 330
             ++P PW+ + ++  
Sbjct: 328 PIKHPLPWIRKWLNSD 343


>gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. equi 4047]
 gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. equi 4047]
          Length = 319

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 124/328 (37%), Gaps = 28/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---RLSAVEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +       
Sbjct: 63  TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E        N  LQ    + +  +  G+    +       V     E   FY+GF   L
Sbjct: 117 IEDIFEWTNNNVFLQNKAKIINDIYENGSALQKK-------VASTYLETFLFYSGFFTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NK+  +AE  + I+RDES+H  +          E      +  +     +L++  
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLY 229

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+ +
Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
                  +FF      Y  G    +  D
Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMTDD 313


>gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 321

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L   E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLPAKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++ +   V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F+
Sbjct: 63  TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  +  G     +       V     E   FY+GF  
Sbjct: 123 WTNSNEFLQNKA--------KIINDIYENGDALQKK-------VASTYLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      ++F++    +L++
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y      +  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEENYTKSLYDQ--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 282

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 20/293 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLP-LKYGWAWEKYLSACNNHW-----MPTEVPM 61
             I        ++D+++           P  KY WA    L    + W      P EV  
Sbjct: 4   KKIYNPSSNETLNDRKVFGGNPHGILTSPKAKYTWA----LKLLGSLWKQIPGFPKEVDT 59

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            DD+  +     LT  ++ M         S +S   NN+   I  +++ PE    L RQA
Sbjct: 60  TDDVRDYAC--NLTTAKKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQA 117

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           +EEA HS ++  ++ ++  +   ++ M +    +  K ++     + L+         + 
Sbjct: 118 YEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAG--------EV 169

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
             E L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++
Sbjct: 170 TDEKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNM 229

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
           IN ++ E P L+T E + K   M  +A  LEI +         +G      E+
Sbjct: 230 INSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEE 282


>gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2]
 gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2]
 gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid
           herpesvirus 2]
 gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2]
 gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2]
 gi|194346388|gb|ACF49570.1| UL40 [synthetic construct]
 gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2]
 gi|237626230|gb|ACR02753.1| UL40 [synthetic construct]
 gi|237626404|gb|ACR02926.1| UL40 [synthetic construct]
          Length = 343

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 117/309 (37%), Gaps = 27/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL      + LT++ER   +    F ++++ LV  N
Sbjct: 51  PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
           I   +    S  +   Y   Q   EAVHS  +      +  +  L   E        P+I
Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K +W                 +  +   + + ++  ++ EG++F   FA I  L   N
Sbjct: 167 QSKLDWL--------------NKRVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +          +  K    + + +  EA  +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFKNYL-----MGPKPSIGRVQELFKEAVQIECAF 267

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    L+  +   Y+++ A+R   ++ + P++   +    +   ++      NF
Sbjct: 268 LRTAAPRNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 328 FERRNTAYS 336


>gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 329

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 136/322 (42%), Gaps = 19/322 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +   ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +  
Sbjct: 11  TPRFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLA 68

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            +  E  V       +Y +   PE           E  H   + +++  LGL+  E+F  
Sbjct: 69  ISQIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFRN 125

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
            R+  +I A+  +           +F      + Q+F+  L +F +  E +  ++ F  +
Sbjct: 126 VRQYKAIMARIEYM---------EAFMRKKDVSQQDFVLSLVMFSLFVEHISLFSQFVIM 176

Query: 209 LSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +S  +  N   GI+   +   ++E +H  FGI + + ++ E P L+T EF  + + +  +
Sbjct: 177 MSFNKHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQ 236

Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E A        G +   +  + E Y+    N     +GLEP++  +        W 
Sbjct: 237 AFNAEKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWF 296

Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345
              I   KE +FF  R T+Y +
Sbjct: 297 DIEILSTKETDFFNKRSTDYSK 318


>gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
 gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
          Length = 283

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 24/293 (8%)

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +EA+H+ 
Sbjct: 3   EYGHLTDEERYAYDGILSYLTFLDSVQTCNI-PHLKGSVTAPEISLCMAEQISQEAMHNQ 61

Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           ++QY+I ++   E  GE+++ +R    +  +  +     Q       T        E   
Sbjct: 62  SYQYLIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYIDKQTT--------ESYF 113

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   + E ++FY GF    +L     M G A+ ++ I RDE  H+     +I +   
Sbjct: 114 IALVADYLLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMA 173

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              H       ++   M   A   E  + +  +    +G+   S EQY +++AN R   I
Sbjct: 174 TFSHSV-----EQIYEMFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAI 228

Query: 308 GLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           GLEPL+   KY ++P+  +    D KK    + NFFE  VT Y   + L  WD
Sbjct: 229 GLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281


>gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           LF82]
 gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520]
          Length = 380

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 134/352 (38%), Gaps = 38/352 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           AN+    P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIERQLSFFWRPEEVDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L D ER +   NL +    +S+   +    +   +S PE   ++   +
Sbjct: 57  SSDRIDFNT--KLRDHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---FTTGT 178
           F E +HS ++ +II  +  D   +F+       I  +A         L   +    + G 
Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMTCERQSLGE 174

Query: 179 KDADQ--------------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           K+ ++                L    V     E + FY  FA   + G    + G  +  
Sbjct: 175 KEFERLYVNEYGWEPYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGERKLLEGNTKIM 234

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEF----QQKSRTMLHEATLLEIAYAHETM 280
           ++I RDE+LH      +I  ++     L  KE     +      +      E+ +A    
Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAEQEMNWADYLF 294

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
             G  +GLNA   + Y+++  N   +++GL+ LF   T +P  WM++ +   
Sbjct: 295 KDGSMIGLNADILKTYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNKWLLTD 346


>gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 324

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 18/316 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y    +   +   + W+ +EV    D+  ++S   L   E+  +K  L   A  E 
Sbjct: 11  KPFEYPEIMQFVEAINKSFWVHSEVDFTADVQDFQS--QLEPHEKNAVKNALLAIAQIEV 68

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V       +Y HL  PE        A  E  HS  +  ++  LG ++   FN   E+P+
Sbjct: 69  SV-KTFWGNLYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYNDA--FNHVVEIPA 125

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR- 213
           I  + ++         S           +E++  L +F ++ E +  ++ FA ILS  R 
Sbjct: 126 IKKRIDFL--------SNVLKHANSTTPKEYVSSLLLFSILIENVSLFSQFAIILSFTRF 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M  ++    +   DE +H N GI +IN+I+ E P L T    +   T++  +  LE 
Sbjct: 178 KGYMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSIELEA 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDL 329
                    G    ++  +   +M++  +    +IG++  +  + +   P  W  E +  
Sbjct: 238 EILDWIFEMGEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEEEVFA 297

Query: 330 KKEKNFFETRVTEYQQ 345
               +FF  R  +Y +
Sbjct: 298 NSMDDFFAKRPVDYTK 313


>gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 343

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 27/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL      + LT++ER   +    F ++++ LV  N
Sbjct: 51  PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
           I   +    S  +   Y   Q   EAVHS  +      +  +  L   E        P+I
Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K +W                 +  +   + + ++  ++ EG++F   FA I  L   N
Sbjct: 167 QSKLDWL--------------NKRVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +          +  K    + + +  EA  +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFKNYL-----MGPKPSIGRVQELFKEAVQIECAF 267

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P     L+  +   Y+++ A+R   ++ + P++   +    +   ++      NF
Sbjct: 268 LRTAAPHNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 328 FERRNTAYS 336


>gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 357

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 18/326 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D     P +Y WA+E +    N HW+ TE+ MQ D+  W     LTD E+ +I   L  F
Sbjct: 6   DRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDWNK--NLTDQEKNVIGDILKGF 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A +E+ V N     I +    PE +         E +H+  + Y+   LGLD    F+ +
Sbjct: 64  AQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAAAYSYLNDILGLD---NFHAF 120

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E   I  K    +    +          K   +E  + + +F    EG+  ++ FA +L
Sbjct: 121 LEDDVIMNKLKSLMDVRNSDHG-------KYNKEEIARSVALFSAAAEGVQLFSSFAVLL 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           S  ++N++ G+ +Q  + +RDESLH   G  +      EN  L  +  ++     +  A 
Sbjct: 174 SFRKSNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKGL-KEIVERSVYHGVDLAL 232

Query: 270 LLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
             E  +  +    +    +     + +M+  AN +  ++G    +       +   W   
Sbjct: 233 KNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFYI 292

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351
            I  +++ +FF+ R T Y +  E  W
Sbjct: 293 TISGEQQTDFFDNRETGYSKPNE-DW 317


>gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 380

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 38/349 (10%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           AN+    P+  G+  VNV       AR D       KY    +      +  W P EV +
Sbjct: 10  ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIEKQLSFFWRPEEVDI 56

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   + +   L + ER +   NL +    +S+   +    +   +S PE   ++   +
Sbjct: 57  TTDRIDFNT--KLQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------- 173
           F E +HS ++ +II  +  D   +F+       I ++A         L   +        
Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGE 174

Query: 174 ---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                       G     Q  L    V     E + FY  FA   + G    + G  +  
Sbjct: 175 DEFERLYISEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIM 234

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETM 280
           ++I RDE+LH      +I  ++     L  K    E +      + +    E+ +A    
Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLF 294

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVI 327
             G  +GLNA   + Y+++  N    ++GL  LF    ++P  WM++ +
Sbjct: 295 KDGSMIGLNADILKSYVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNKWL 343


>gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
 gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
          Length = 317

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + + A+ 
Sbjct: 21  WEKLTEQFWLDTRIPISNDLSDWR---ELDEDHQWVVGHVFGGLTLLDTLQSQDGMAALR 77

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I  +L       E+F        +  K  +  
Sbjct: 78  KDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIFEWSDSEEFLQNKTKFIY 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                             D   L+      V  E   FY+GF   L     NK+  +AE 
Sbjct: 138 DLYHD-------------DGHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +      +E +      L++    E  Y H+   + 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDLYANEEKYVHKVYDQ- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG        + ++ AN+    +G +PLF  TE   NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 320

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WK       + +   K+  G     +++  N  +  I
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
            ++  + + +  L      EA+H+ ++ YI T+L  +    E+F   ++   +  KAN  
Sbjct: 77  AKYTPDFQEKAVLTVFGSFEAIHAKSYSYIFTTLCTNTEIDEVFEWVQKNEFLQYKANRI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +           T  K+ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 GEVY---------TAIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          I         +E        L +    E+ Y  +   +
Sbjct: 188 VISLILRDESIHGVAVGFFAQNIFKTFTEEKQQELTLWGYEYLLDLYQNEMKYTDDLYAE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +    P  ++Y+++ AN+    +GL+ +F   E NP   M+ + +     +FF  + +
Sbjct: 248 TGLS---PEVKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGS 303

Query: 342 EYQQG 346
            Y   
Sbjct: 304 TYAVA 308


>gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
 gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
          Length = 322

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 77  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 ADIYNSI---------EEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +  Q     +L +    E+ Y  +   +
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQESLQLWGYELLLDLYQNEMKYTEDIYAE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +    P  + Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 248 TGLS---PEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303

Query: 342 EYQQG 346
            Y + 
Sbjct: 304 TYAKA 308


>gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 327

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 22/311 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+  D  +W     LT++E+ + K+ L      ++   +  +  I
Sbjct: 25  FWNQNVRQFWIDEEIPLSGDKLIWA--AELTENEKDVYKKVLVGLTLLDTHQGSLGMTNI 82

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
              + NP     L      E +H+ ++  I ++L   +   ELF    + P +  K    
Sbjct: 83  AMSIDNPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEIEELFKWSEQNPELQKKMEII 142

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + + +            D E L    V  V  E   FY+GF  +L L     M+   E
Sbjct: 143 SHHYENI-----------QDDESLYMAMVASVFLESFLFYSGFYYMLLLAGKGMMINSGE 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDE++H  +   +  +I         KE ++K   +L E    EI Y      K
Sbjct: 192 IINLIIRDEAIHGLYIGVLSMEIFKTFNEEKQKEMKEKVICLLRELMANEIKYTELIYSK 251

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             +        +++++ AN+    +G E  +  T+   NP  + + +    K  +FF T+
Sbjct: 252 IGL---VEDVNRFLEYNANKALQNLGFENEYSTTDKDINPIVF-NGLKTTTKSHDFFSTK 307

Query: 340 VTEYQQGAELK 350
              Y +  +++
Sbjct: 308 GNGYIKTTKVE 318


>gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
 gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
          Length = 318

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 18  FWDQQWKQIWFPEEIAVSKDIQQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 73  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 132

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 133 ADIYNSI---------EEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +  Q     +L +    E+ Y  +   +
Sbjct: 184 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQEALQLWGYELLLDLYQNEMKYTEDIYAE 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +    P  + Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 244 TGLS---PEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 299

Query: 342 EYQQG 346
            Y + 
Sbjct: 300 TYAKA 304


>gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
          Length = 336

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 122/329 (37%), Gaps = 30/329 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D NQ+  +     WEK        W+ T +P+ +DL  W++   L+  E+ ++ +  G  
Sbjct: 26  DWNQVEDMIDKMTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L +      +  ++             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 80  TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHTKAEIEEIFE 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  Q+                    + V   + E   FY+GF  
Sbjct: 140 WTNNNEFLQYKAQKINEIYQS---------------RDALKMKVASTMLETFLFYSGFFT 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +      Q   E P    +  +     +  E
Sbjct: 185 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELPLEEQETLKMWVYQLCLE 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ Y      +  VG      + ++++ AN+    +G +PLF  T        M+ 
Sbjct: 245 LYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 301

Query: 326 VIDLKKEKNFFETRVTEYQQGA--ELKWD 352
           +       +FF      Y  G    ++ D
Sbjct: 302 ISTGTSNHDFFSQVGNGYLLGTVEAMEDD 330


>gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum WCFS1]
 gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 336

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 25/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +D+A W+    L DD R ++    G     ++L + + + A+ 
Sbjct: 34  WEKLTEQFWLDTRIPVSNDMADWR---ELDDDHRWVVGHVFGGLTLLDTLQSQDGLQALR 90

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           R++        L    F E+VH+ ++  I  +L   +   E+F+       + AKA W  
Sbjct: 91  RNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKAQWIY 150

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +    +                     V  V  E   FY+GF   L     N++  +AE 
Sbjct: 151 KLYDNIDEDPLKQK-------------VANVFLETFLFYSGFYTPLYYLGHNQLPNVAEI 197

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       EF+      L++    E  Y H  +   
Sbjct: 198 IKLILRDESVHGTYIGYKFQLGFKDRSEKQQAEFKDWMFDFLYKLYENEENYIH--LVYD 255

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            +G +      + ++ AN+    +G + LF  T    NP   M+ +       +FF    
Sbjct: 256 QIGWS-DEVLTFSRYNANKALMNLGQDALFPDTAEDVNPVV-MNGISTGTSNHDFFSQVG 313

Query: 341 TEY 343
             Y
Sbjct: 314 NGY 316


>gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5]
 gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5]
          Length = 315

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 122/319 (38%), Gaps = 35/319 (10%)

Query: 38  KYGWAWE--------KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           KY + +E            +  N W+ TE P+ DD         L+  E    +    F 
Sbjct: 13  KYKYFYEAECPDIDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +    +  +   Y + Q   E VHS  +  I   L  ++      Y
Sbjct: 70  SAADDLVNVNL-GNLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGY 128

Query: 150 REV----PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            E     P++  K +W  +              + A  E + + +V  ++ EG++F + F
Sbjct: 129 VEDALSDPAVRRKVDWLER--------------RVAAAESVAEKYVLMILIEGIFFSSSF 174

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N  V   +    I RDE++H      + N           +    + R + 
Sbjct: 175 AAIAYLRTHNLFVVTCQTNDLISRDEAVHTTASCCIFNNYLGGE-----RPPPDRVRKLF 229

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  +E  +     P+G   L+  +   Y+++ A+R    I L PLF        +   
Sbjct: 230 REAVEIEREFIWSRAPRGSHILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLA 289

Query: 326 VIDLKKEKNFFETRVTEYQ 344
           ++  +K  NFFE R T Y 
Sbjct: 290 LMTAEKHTNFFERRSTTYT 308


>gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           cibaria KACC 11862]
          Length = 320

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 115/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK        W+ T +P+ +DL  W+    +T++E  ++    G  
Sbjct: 9   NWNEVEDAIDKATWEKL---TEQFWLDTRIPLSNDLDDWR---KMTEEEHYLVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ R +        L    F E+VH+ ++  I  +L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLKRSVRTQHEEAVLNNIEFMESVHAKSYSSIFETLNTPAEIDEIFS 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    Q  QT                         V  E   FY+GF  
Sbjct: 123 WTNTNDFLQYKAQRINQIYQTGDDLQKKV---------------ASVFLETFLFYSGFYT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       E +     +L +
Sbjct: 168 PLWYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQLGFNELTEDQQSEMKMWMYDLLLD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y         +G    S   ++++ AN+    +G +PLF       NP   M+
Sbjct: 228 LYNNEEQYTKHLYDG--IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTTTSNHDFFSQVGNGY 302


>gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 225

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
             L   +  E +H   + Y++ ++G+ E E +  + +  ++  K  + L+         F
Sbjct: 1   MMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLE---------F 50

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               K   +   + L VF    EG+  +  FA +L+  R  KM G+ +   +  RDE+LH
Sbjct: 51  EESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLH 110

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCE 293
            N  I + N    EN  +W  EF+++  +       LE  +       G V  L+A    
Sbjct: 111 TNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVR 170

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  NFFE RVTEY + A
Sbjct: 171 NYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224


>gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9]
 gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 321

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DDL        LT  ER   +    F ++++ LV  N
Sbjct: 28  PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +   +    +  +   Y + Q   E  HS  +  I   L  ++           +  A+ 
Sbjct: 85  L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDA----------AARARY 133

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
             ++     +         K  +   + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 134 VASIIGDAAIKRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVV 193

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H      + N         + K   ++   +  EA  +E  +    
Sbjct: 194 TCQSNDLISRDEAIHTRASCCIYNNYLGG----FEKPEPKRIYELFSEAVNIECEFLLSH 249

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+    L+      Y+++ A+R   +IGL PLF   +    +    + ++K  NFFE R
Sbjct: 250 APQNSHLLDIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMTVEKHTNFFERR 309

Query: 340 VTEYQ 344
            T Y 
Sbjct: 310 STAYS 314


>gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus
           1]
          Length = 378

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 122/314 (38%), Gaps = 18/314 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA E      N HW   E+ + DD++ WK+   LT  E+  I + L  F   
Sbjct: 71  VFKPFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQL 129

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +           N E R  L   A  E  H   +  +  +LGL E E        
Sbjct: 130 DVSVGHIYHNIFIPIFKNNELRNMLCSFACREGTHQQAYALLNDTLGLPETEYST----- 184

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                     L Y +  +   +    K  +   +    +  V  EG+  +  FA +L+  
Sbjct: 185 ---------FLNYKEMTNKTIYMNDMKTDNLSEIALSLIKAVYNEGVVLFASFAMLLNFQ 235

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R   M G+ +  ++ +RDE++H+     +      E   + T+EF    R +  E   LE
Sbjct: 236 RFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQLE 295

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIG-LEPLFKYTENPFPWMSEVIDL 329
             +            GL       Y+++I  RR  Q+G LE       NP  W+S +I  
Sbjct: 296 TDFIILLFTNITEIKGLTKLCMINYVKYILQRRTEQLGLLESTEVLLTNPIDWISWLIAG 355

Query: 330 KKEKNFFETRVTEY 343
           +   NFFE RVTEY
Sbjct: 356 RNITNFFENRVTEY 369


>gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
 gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
          Length = 324

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+    ++D ER  +    G  
Sbjct: 13  NWNNIEDELDKATWEKL---TQQFWLDTRIPISNDLRTWR--GNMSDQERQTLNLVFGGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            + ++L + + + ++   + N +    L    F E+VH+ ++  I  +L  ++ E+  ++
Sbjct: 68  TTLDTLQSQDGMASLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEKSEIEAIF 126

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S     N  LQY     +  + TGT    +       +  V  E   FY+GF   L
Sbjct: 127 DWADS-----NEFLQYKANRINDIYQTGTPLEKK-------IASVFLETFLFYSGFYTPL 174

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NKM+ +AE  + I+RDES+H  +          + P   +   Q     +L+E  
Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKLPESESTALQSWMYDLLYELY 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
             E  Y HE      +G        ++++ AN+    +G EP+F       NP   M+ +
Sbjct: 235 ENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 290

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 291 STSTANHDFFSGVGNGY 307


>gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
 gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU028]
 gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU045]
          Length = 322

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTD E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIVENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L+E    E++Y H       +   A     Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
 gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
          Length = 319

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 129/311 (41%), Gaps = 24/311 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y     +HW+P EV    D   W+    L+ +E+   K  L FFA  + LV  N+V   
Sbjct: 20  YYQKLKKSHWIPEEVDTSKDAQDWQ---LLSKEEKSFAKLILAFFAQFDGLVVENLVRHF 76

Query: 105 YRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160
            + +S    E   + + QA  E +H+ T+  +I  L       +  +      SI   A+
Sbjct: 77  QQEVSSFAKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIAD 136

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W  ++                    L +  + +   EG+ F   FA +     +N++ G+
Sbjct: 137 WVEKWMN--------------PAVPLPERIIAFAALEGVIFTGAFAAVYYFTISNRLKGL 182

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               ++I RDE+LH  F   + N +  E   ++ +  Q++   +L  A      +   ++
Sbjct: 183 RTANEWISRDEALHKKFAEVLYNFLVDEL-KVFERVSQERCHEILTSAIEAVTDFIKYSL 241

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
               V ++A     YM+   +     +  E ++   EN   +M  +I L+ + NFFE  +
Sbjct: 242 RLDNVNIDADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVI 299

Query: 341 TEYQQGAELKW 351
           T+Y +G ++  
Sbjct: 300 TDYSKGMDMGD 310


>gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis FRI909]
          Length = 322

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTD E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIVENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L+E    E++Y H       +   A     Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---ADDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU121]
          Length = 324

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L++ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEKNTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIENYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      +   Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQRADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L E    E++Y H       +   A     Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLKELYDNEVSYTHLLYDDIGL---AEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311


>gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
 gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
          Length = 367

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 16/321 (4%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
                   + +   + + +  + Y    +  W P EV +  D A + +   L+  E+ + 
Sbjct: 20  PFFGDPVSIQRYDKVAWPFVQKWYEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIY 76

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
             NL      +S+       A     S PE +  +L    +EA+HS ++ +I+ +   D 
Sbjct: 77  FSNLKRQTMLDSIQGAAPFEAFGPWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDP 136

Query: 143 GELFNMYREVPSITAKANWALQYTQT--------LSSPSFTTGTKDADQEFLQDLFVFYV 194
           G +F+   +V  I   A     Y           ++  +FT       +           
Sbjct: 137 GIVFDHVLDVQEIVDCAGQISVYYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAAN 196

Query: 195 VFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH-- 251
             EG+ FY  FA   +  +  NKM G A+  + I RDE  HL      +N++ + +P   
Sbjct: 197 SLEGVRFYVSFACSWAFMQFLNKMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFG 256

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +  +E + +   M  +    E  +A+     G  +GLNA    Q + ++A  R   IG  
Sbjct: 257 IIREELRGEMTQMYVDVVNQEKEWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHP 316

Query: 311 -PLFKYTENPFPWMSEVIDLK 330
            P     +NP PW++E +D K
Sbjct: 317 YPGQARKDNPVPWINEWLDNK 337


>gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1]
 gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1]
 gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small
          Length = 303

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 122/305 (40%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DD         L++ E    +    F ++++ LV  N
Sbjct: 10  PDMDHLRSLSVANRWLETDLPLGDDAKD---VAALSEPELEFYRFLFAFLSAADDLVNVN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +  ++    +  +   Y + Q   E VHS  +  I   L          +R   +   + 
Sbjct: 67  L-GSLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLML----------FRGDAAARERY 115

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
             A    + +        ++ A+   + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 116 VRAALRDEAIRRKVEWLDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVV 175

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +   +I RDE++H +    + N    + P    +  + +   +  EA  +E  +    
Sbjct: 176 TCQSNDFISRDEAIHTSASCCIYNNYLGDAP----RPDEARIHQLFAEAVEIECEFLRAR 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+  + L+ P+   Y+++ A+R    IG  PLF        +   ++  +K  NFFE R
Sbjct: 232 APRDSLLLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNFFERR 291

Query: 340 VTEYQ 344
            T Y 
Sbjct: 292 STNYT 296


>gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
 gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
          Length = 339

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 30/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L  D +  +    G  
Sbjct: 16  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDTDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+ + +        L    F E+VH+ ++  I ++L   E   E+F+
Sbjct: 70  TLLDTVQSEAGLTALKQDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPEEINEIFD 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                   ++ +++ L+      V  E   FY+GF  
Sbjct: 130 WSDSEEYLQNKAVQIANIY------------RNPEEDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ +      L+E
Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMHDRTEKQQQDMKDWMYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H  +    VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-EDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y+ GA   +  D
Sbjct: 293 GISTSTANHDFFSQVGNGYRLGAVEAMNDD 322


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 22/337 (6%)

Query: 21  DKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           D++  N ++++      L P +Y    +   +  +++W+ +E     D+  +K++  LT 
Sbjct: 98  DEQARNRKTNIFEKRINLKPYEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTR--LTV 155

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+  IK  +   +  E  V  +    IY  +  PE        A  E  H   + +++ 
Sbjct: 156 VEQNAIKNTMLAISQIEVAV-KSFWGEIYNKMPKPEIGAVGATFAESEVRHHDAYSHLLE 214

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            LGL+    F   ++ P I  + ++           +      + ++E+ + + +F +  
Sbjct: 215 ILGLNNE--FKHLKKKPVIMKRVHYL--------ETALKNAKSEDNKEYAESILLFSLFI 264

Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           E +  ++ F  I++  +   M  G++   +   ++E++H +FGID+I  IK ENP  +  
Sbjct: 265 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAENPTWFDA 324

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFK 314
           E  +  R +  EA   E          G +         ++++   N     IG+E +F 
Sbjct: 325 EHNEIVRELCREAFASESELVDWIFEAGELEFLPKDVINEFLKNRFNNSLESIGIEKVFD 384

Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             E       W  + I   K  +FF  R   Y +  +
Sbjct: 385 VDETLLTQTEWFDDEIIGTKHGDFFVKRSINYSKRTK 421


>gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 339

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 28/319 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +D+  W++   L +D +  +    G  
Sbjct: 16  NWNEISDMIDKATWEKL---TEQFWLDTRIPVSNDMDDWRN---LDEDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+   +        L    F E+VH+ ++  I ++L   +   E+FN
Sbjct: 70  TLLDTVQSEAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIDEIFN 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    +  ++ L+      V  E   FY+GF  
Sbjct: 130 WSDTEEYLQNKATKIANMY------------LNPAEDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     N++  +AE  + I+RDES+H  +          E      ++ +      L+E
Sbjct: 177 PLYYLGHNELNNVAEIIKLILRDESVHGTYIGYKFQVGLHERTEKQQQDMKDWLYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    K  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTAADVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 293 GISTSTSNHDFFSQVGNGY 311


>gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
 gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
          Length = 322

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTD E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKETFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L+E    E++Y H       +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---TEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
 gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
          Length = 322

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L+D ER   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSDSERETFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L+E    E++Y H       +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---TEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str.
           Zhang]
 gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str.
           Zhang]
          Length = 326

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L  DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN         S+                      V  E   FY+GF  
Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    +  +     +L +
Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y ++   K            ++++ AN+    +G E  F  T    NP   M+
Sbjct: 228 LYENEEKYTNDLYAK--TNWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTSTANHDFFSQVGNGY 302


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 18/338 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R      R  N       L P +Y    E   +  +++W+ TE     D+  +K    L+
Sbjct: 92  RNEHSKDRKHNIFEKRINLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFK--VRLS 149

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER +IKR +   +  E  V       IY  +  PE        A  E  H   + +++
Sbjct: 150 HPEREVIKRTMLAISQIEVSV-KTFWGNIYTKMPKPEIGSVGATFAESEVRHHDAYSHLL 208

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL++   F+   E P I  +  +           +      + ++E+ + + +F + 
Sbjct: 209 EILGLNDE--FSKLEENPDIMTRVRYL--------ESALKHANSEDNKEYSESILLFSLF 258

Query: 196 FEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I+S  +  N + GI+   +   ++E LH NFGID+I  IK ENP  + 
Sbjct: 259 IEHVSLFSQFLIIMSFNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQENPSWFN 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLF 313
           +E+QQ  RT+  +A   E         +G +        +++++   N+    I +E +F
Sbjct: 319 EEYQQSVRTLCLQAFKSESKIIDWIYAEGELDFIPKAQVKEFIKNRFNQSLQSIDIEKVF 378

Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  E       W  + I   K  +FF  R   Y + ++
Sbjct: 379 EIDEKLLEKTEWFDDEIIGTKHGDFFVKRSINYNKRSK 416


>gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 346

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 119/318 (37%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D NQ+  +     WEK        W+ T +P+ +DL  W++   L+  E+ ++ +  G  
Sbjct: 36  DWNQVEDMIDKLTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 89

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L +      +  ++             F E+VH+ ++  I ++L    +  ++F 
Sbjct: 90  TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHTKAEIEDIFE 149

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  Q+               +    + V   + E   FY+GF  
Sbjct: 150 WTNNNEYLQFKAKKINEIYQS---------------KDALKMKVASTMLETFLFYSGFFT 194

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +      Q   E      +E +     +  E
Sbjct: 195 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELSEQEQEEMKMWVYNLCLE 254

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ Y      +  VG      + ++++ AN+    +G +PLF  T        M+ 
Sbjct: 255 LYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 311

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 312 ISTGTSNHDFFSQVGNGY 329


>gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei ATCC 334]
 gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei BL23]
 gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus casei ATCC 334]
 gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           casei BL23]
 gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W]
 gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II]
          Length = 326

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L  DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KAN         S+                      V  E   FY+GF  
Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    +  +     +L +
Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y ++   K            ++++ AN+    +G E  F  T    NP   M+
Sbjct: 228 LYENEEKYTNDLYAK--TNWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTSTANHDFFSQVGNGY 302


>gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1]
 gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1]
          Length = 321

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DDL        LT  ER   +    F ++++ LV  N
Sbjct: 28  PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +   +    +  +   Y + Q   E  HS  +  I   L  ++           +  A+ 
Sbjct: 85  L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDA----------AARARY 133

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
             ++     +         K  +   + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 134 VASIIGDAAIGRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVV 193

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H      + N         + K   ++   +  EA  +E  +    
Sbjct: 194 TCQSNDLISRDEAIHTRASCCIYNNYLGG----FEKPEPKRIYELFSEAVNIECEFLLSH 249

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+    L+  +   Y+++ A+R   +IGL PLF   +    +    + ++K  NFFE R
Sbjct: 250 APQYSHLLDIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMTVEKHTNFFERR 309

Query: 340 VTEYQ 344
            T Y 
Sbjct: 310 STAYS 314


>gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
 gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
          Length = 326

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 29/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L        WEK        W+ T +P+ +DL+ W+  N   +D++ ++ +  G  
Sbjct: 9   NWNALEDEIDKATWEKL---TEQFWLDTRIPLSNDLSDWREFN---EDDKDIVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L + + + ++ + +        +    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 63  TLLDTLQSQDGMSSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                       N  LQY     +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNS--------NEILQYKANRINEIYQNGSPLQKK-------VASVFLETFLFYSGFYT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      +EF      +L+E
Sbjct: 168 PLYWLGHNKLANVAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYE 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFP-WMS 324
               E  Y H    K  VG        ++++ AN+    +G++PLF   Y +N  P  M+
Sbjct: 228 LYENEEKYTHLLYDK--VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVVMN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTSTSNHDFFSQVGNGY 303


>gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius UCC118]
 gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius UCC118]
 gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius CECT 5713]
 gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 326

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 29/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L        WEK        W+ T +P+ +DL+ W+  N   +D++ ++ +  G  
Sbjct: 9   NWNALEDEIDKATWEKL---TEQFWLDTRIPLSNDLSDWREFN---EDDKDVVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L + + + ++ + +        +    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 63  TLLDTLQSQDGMSSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                       N  LQY     +  +  G+    +       V  V  E   FY+GF  
Sbjct: 123 WTNS--------NEILQYKANRINEIYQNGSPLQKK-------VASVFLETFLFYSGFYT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E      +EF      +L+E
Sbjct: 168 PLYWLGHNKLANVAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYE 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFP-WMS 324
               E  Y H    K  VG        ++++ AN+    +G++PLF   Y +N  P  M+
Sbjct: 228 LYENEEKYTHLLYDK--VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVVMN 284

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 285 GISTSTSNHDFFSQVGNGY 303


>gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 339

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 120/319 (37%), Gaps = 28/319 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W++   L +D +  +    G  
Sbjct: 16  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWRN---LDEDHQWTVGHVFGGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ +   + A+   +        L    F E+VH+ ++  I ++L   +   E+FN
Sbjct: 70  TLLDTVQSEAGMTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNSPDEIDEIFN 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    +  ++ L+      V  E   FY+GF  
Sbjct: 130 WSDTEEYLQNKATKIANMY------------LNPAEDPLKKKV-ANVFLETFLFYSGFYT 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     N++  +AE  + I+RDES+H  +          E      ++ +      L+E
Sbjct: 177 PLYYLGHNELNNVAEIIKLILRDESVHGTYVGYKFQVGLHERTEKQQQDMKDWMYNFLYE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    K  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 237 LYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTATDVNPVV-MN 292

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 293 GISTSTSNHDFFSQVGNGY 311


>gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 318

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 112/303 (36%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +        L    F E+VH+ ++  I ++L   +   E+F+       +  KA    
Sbjct: 79  KDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKALKIR 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                   P                  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYANEPDP--------------LKKKVASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P    ++ +      L++    E  Y H  +   
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGYNQLPKEKQEDMKNWIYDFLYKLYGNEEKYTH--ILYD 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
             G        ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 243 QTGWT-EDVLTFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 140/337 (41%), Gaps = 22/337 (6%)

Query: 21  DKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +KR L  ++++      L P +Y    E   +  +++W+ TE     D+  +K+  GL++
Sbjct: 96  NKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT--GLSE 153

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  IK  +   +  E  V       ++  L  PE        A  E  H   + +++ 
Sbjct: 154 VERSAIKNTMLAISQIEVAV-KTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLE 212

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            LGL+  E F   ++ P I  + ++           S      D D+E+ + + +F +  
Sbjct: 213 ILGLN--EEFKELKKKPVIMKRVHYL--------ETSLKHAKSDDDREYTESILLFALFI 262

Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           E +  ++ F  I++  +   M  GI+   +   ++E +H +FG+D+IN IK ENP  + +
Sbjct: 263 EHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFDE 322

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFK 314
           E     + M   +   E         KG +         ++++   N+    IGLE LF 
Sbjct: 323 EHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEKLFD 382

Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             E       W  + I   K  +FF  R   Y +  +
Sbjct: 383 IDEALLQETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 419


>gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 325

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N +      + WEK     +  W+ T VP+ +DL  W+    L   ER    +     
Sbjct: 17  DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L + +    +      P+         F E+VH+ ++  I ++L    +  ELFN
Sbjct: 71  TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  + +GT    +       V  V  E   FY+GF  
Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTPLQKK-------VASVFLETCLFYSGFYT 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NKM+  AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 176 PLRYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQ 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+H    K  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 236 LYENEEKYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 292 GISTSSSNHDFFSQVGNSY 310


>gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
 gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
          Length = 322

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 117/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 77  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEFLQYKANKI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ + E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 ADIYNSI---------EEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +E       +L +    E+ Y  +   +
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLFKQFSKEKQEELHLWGYELLLDLYQNEMKYTDDIYAE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +    P    Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 248 TGLS---PEVRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303

Query: 342 EYQQG 346
            Y + 
Sbjct: 304 TYAKA 308


>gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
 gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
          Length = 367

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 121/304 (39%), Gaps = 16/304 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
            +  + Y    +  W P EV +  D A + +   LT  E+ + + NL      +S+    
Sbjct: 37  PFVQKWYEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAA 93

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
              A     S PE +  +L    +EA+HS ++ +I+ +   D G +F+   +V  I   A
Sbjct: 94  PFEAFGPWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCA 153

Query: 160 NWALQYTQT--------LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +    +           ++  +FT       +             EG+ FY  FA   + 
Sbjct: 154 HQISTHYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANTLEGIRFYVSFACSWAF 213

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP--HLWTKEFQQKSRTMLHEA 268
            +   KM G A+  + I RDE  HL     ++N++   +P   +  +E + +   M  + 
Sbjct: 214 TQFQKKMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFLDV 273

Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEV 326
              E  +A      G  +GLNA      + ++   R   IG   P     E P PW++E 
Sbjct: 274 GNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWINEW 333

Query: 327 IDLK 330
           ++ K
Sbjct: 334 LNNK 337


>gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
 gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
          Length = 336

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 18/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    E   +  N++W+ TE     D+  +K     T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E          IY  +   E     +  A  E  H   + +++  LG+ E   F  
Sbjct: 75  IAQIEV-QVKTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             +VP+I  + ++  +Y              D  QE++  L +F    E +  ++ F  +
Sbjct: 132 VTDVPAIEERIDYLDEY--------LEKSESDDTQEYVMSLLLFSTFVEHVSLFSQFLIM 183

Query: 209 LSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            S  +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +    +
Sbjct: 184 TSFDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQ 243

Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +        + +++   N+    +G+EP+F+  E+      W 
Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
            E I + K+ +FF  R T Y + A+
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328


>gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 322

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTD E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDPEKEAFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDKWVIEEPHLKYKSDKIINNYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E       +  Q+ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGMDAQSLRNELSESEKLQADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L +    E+AY H       +   A     Y+++  N+    +G +P F+  E NP 
Sbjct: 226 YKLLDDLYKNEVAYTHSLYDDIGL---AEDVLNYVRYNGNKALSNLGFDPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311


>gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 317

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + + A+ 
Sbjct: 21  WEKLTEQFWLDTRIPISNDLSDWR---ELDEDHKWVVGHVFGGLTLLDTLQSQDGMAALR 77

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I  +L       E+F        +  K     
Sbjct: 78  KDIRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPSEIDEIFAWSDSEEFLQNKTKRIY 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +                 D+  L+      V  E   FY+GF   L     N++  +AE 
Sbjct: 138 ELYHD-------------DEHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNQLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      +E +      L++    E  Y H    + 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHTLYDQ- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG        + ++ AN+    +G +PLF  TE   NP   M+ +       +FF    
Sbjct: 243 -VGWT-DEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis Il1403]
 gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis CV56]
          Length = 325

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N +      + WEK     +  W+ T VP+ +DL  W+    L   ER    +     
Sbjct: 17  DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L + +    +      P+         F E+VH+ ++  I ++L    +  ELFN
Sbjct: 71  TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  + +GT    +       V  V  E   FY+GF  
Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTPLQKK-------VASVFLETCLFYSGFYT 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NKM+  AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 176 PLRYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQ 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+H    K  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 236 LYENEEKYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 292 GISTSSSNHDFFSQVGNSY 310


>gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 327

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 128/309 (41%), Gaps = 19/309 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+ +WK    LT + +   K+ LG     ++L ++  +  I
Sbjct: 20  FWEQNIRQFWIDTEYIPSKDIDVWK---KLTPEMQETYKKALGGLTLLDTLQSHTGMPKI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      EA+H+ ++  I T++       ELF   ++   +  KA   
Sbjct: 77  LDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQFKAATI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY ++L         K    E L       V+ E   FY+GF   L L    +MV  A+
Sbjct: 137 DQYYRSLDK-------KKVSNEELYMSLAASVLLESFLFYSGFFIPLWLAGQGQMVASAD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +   I  +      +E ++K   +L      E+ Y  E    
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDIFRKLS--NQEEVKKKVVDLLMLLYENELKYTEEIYTD 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +       ++Y+++ AN+    +G E LF+  E NP   ++ +     + +FF  + T
Sbjct: 248 VGLTA---EVKEYVRYNANKALMNLGFEELFEVKEVNPIV-LNGLNLETTQHDFFSKKST 303

Query: 342 EYQQGAELK 350
            Y++  ++ 
Sbjct: 304 NYEKATQIS 312


>gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 333

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 120/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L  D +  +    G  
Sbjct: 10  NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDTDHQWTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L +   + A+   +        L    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 64  TLLDTLQSQAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIREIFD 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                    D   + L+      V  E   FY+GF  
Sbjct: 124 WSDSEEYLQNKAVKIGNIY------------LDESVDPLKKKV-ANVFLETFLFYSGFYT 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ +      L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H  +    +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 231 LYDNEGNYTH--LLYDQIGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310


>gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 324

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +D+  WK    L+ +E+ +  R     
Sbjct: 15  NWNRIEDEKDLEVWNH---VTTNFWLPEKIPLSNDIQSWK---MLSKEEKKLTIRIFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       +I         +  +    F EAVH+ ++  I ++L    +    + 
Sbjct: 69  TLLDTLQNIIGAPSIMMDAKTMHEKAVISNIGFMEAVHARSYSSIFSTLCSTTEVDSAYF 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  K N   +                 ++  L+      V  E   FY+GF  
Sbjct: 129 WSEKNKFLQNKVNIISKIY--------------LEKNSLKKKI-ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   ++  + I+RDE++H  +      +  I       K  +  +  +L++
Sbjct: 174 PMFYSSRGKLTNTSDLIRLIIRDEAVHGYYIGYKFQKDLISLNEKEKKNIKDFAFNLLYK 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y++          N      ++ + AN+    +G E  F   E   NP    +
Sbjct: 234 LYENEINYSYSLYKDIIPIKN---IISFLNYNANKSLMNLGYEQYFPDDESLVNPDILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 291 LTPNSNENHDFFSGSGSSYVMG 312


>gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3]
 gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3]
          Length = 353

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 27/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + +DL        L+++E+   +    F ++++ LV  N
Sbjct: 61  PDIGHLRALSIMNRWTETEFVVAEDLGD---VAKLSEEEKNFYRFLFTFLSAADDLVNLN 117

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155
           I   +       +   Y   Q   EAVHS  +  I   L  ++      Y     E P I
Sbjct: 118 I-DNLLGLFEQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSSARAKYVQSALESPVI 176

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K  W  +                 +   + + ++  ++ EG++F   FA+I  L   N
Sbjct: 177 QSKLEWLDRRI--------------LECTSIPEKYILMILTEGIFFSASFARIAYLRTNN 222

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +       N     K    + + +  EA  LE A+
Sbjct: 223 LFVVTCQINNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAF 277

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    L+  S   Y+++ A+R    + + P++        +   ++      NF
Sbjct: 278 LRAAAPRDSRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNF 337

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 338 FERRSTAYS 346


>gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL F2-515]
          Length = 267

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 15/266 (5%)

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142
            +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++
Sbjct: 2   IIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQ 60

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             +F + R  P+I  +    +       +        +   E L    +   + EG+ FY
Sbjct: 61  NRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFY 112

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + + 
Sbjct: 113 SGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTH 172

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321
                A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   
Sbjct: 173 EAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMT 231

Query: 322 WMSEVID--LKKEKNFFETRVTEYQQ 345
           W+    D   + + +FFE R + Y++
Sbjct: 232 WIKAYADNFTETKTDFFEMRNSSYKK 257


>gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis ATCC 367]
 gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus brevis ATCC 367]
          Length = 331

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 111/302 (36%), Gaps = 24/302 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L  D + ++    G     ++L + + + A+ 
Sbjct: 24  WEKLTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGMAALR 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           R +  P     L    F E+VH+ ++  I ++L   +   E+F        +  K     
Sbjct: 81  RDIRTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFQWSDSEEFLQNKTKRIY 140

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                             D+  L+      V  E   FY+GF   L     NK+  +AE 
Sbjct: 141 DLYHD-------------DEHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      ++ +      L++    E  Y H    + 
Sbjct: 187 IKLILRDESVHGTYIGYKFQLGMKELTDAEQQQMKDWMYDFLYQLYDNEEKYTHTLYDQ- 245

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFFETRVT 341
            +G        ++++ AN+    +G +PLF  T        M+ +       +FF     
Sbjct: 246 -IGWT-EKVLTFIRYNANKALMNLGQDPLFPDTAEDVDPVVMNGISTSTANHDFFSQVGN 303

Query: 342 EY 343
            Y
Sbjct: 304 GY 305


>gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
 gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
          Length = 335

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 17/308 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W   N L    +L     LG     ++L ++  +  I
Sbjct: 22  FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN  
Sbjct: 79  IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   +
Sbjct: 139 DTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E    
Sbjct: 192 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIYGD 251

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVT 341
             +  N    ++Y+++ AN+    +G E  F+  +N  P +   ++++  + +FF  + T
Sbjct: 252 LGLTGN---VKEYIRYNANKALMNLGFEEEFEV-KNVNPIVLNGLNVETTQHDFFSKKST 307

Query: 342 EYQQGAEL 349
            Y++  E+
Sbjct: 308 NYEKALEV 315


>gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
 gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
          Length = 324

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 125/320 (39%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q  P +Y    +   +   + W+  EV    D   + S   L   ER  ++ +L   A
Sbjct: 7   RLQYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHS--HLNPAERTAVRNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V  +    +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVAV-KSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGYN--SQFEKLV 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP I  +  +         S + +       +E+   L +F ++ E +  ++ FA ILS
Sbjct: 122 EVPVIRQRIEYL--------SDALSNAKSTDTREYTISLILFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P ++ +    +   ++ E+ 
Sbjct: 174 FTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATITRVSNLVKESI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            +E         +G    ++      +M++ A+    +I L  LF  +     P  W  E
Sbjct: 234 EVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTEDNKPMLWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
          Length = 329

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +   +
Sbjct: 13  RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLAIS 70

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +   PE           E  H   + +++  LGL+  E+F   R
Sbjct: 71  QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFLNVR 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +  +I A+  +           +F      + Q+F+  L +F +  E +  ++ F  ++S
Sbjct: 128 QYKAIMARIEYM---------EAFMRRKDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMS 178

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI + + ++ E P L+T  F  + + +  +A 
Sbjct: 179 FNKHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAF 238

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E    +     G +   +  + E Y+    N     +GLEP +           W   
Sbjct: 239 TAEKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEPAYNINPEQLKETEWFDI 298

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318


>gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
 gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
          Length = 322

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTDDER   KR
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  KA+  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKADKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L +    E++Y H       +         Y+++  N+    +G +P F+  + NP 
Sbjct: 226 YVLLEDLYSNEVSYTHMLYDDIGL---TEDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311


>gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
 gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
          Length = 335

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 17/308 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W   N L    +L     LG     ++L ++  +  I
Sbjct: 23  FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 79

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN  
Sbjct: 80  IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 139

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   +
Sbjct: 140 DAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 192

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E    
Sbjct: 193 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIYGD 252

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVT 341
             +       ++Y+++ AN+    +G E  F+  +N  P +   ++++  + +FF  + T
Sbjct: 253 LGL---TGDVKEYIRYNANKALMNLGFEEEFEV-KNVNPIVLNGLNVETTQHDFFSKKST 308

Query: 342 EYQQGAEL 349
            Y++  E+
Sbjct: 309 NYEKALEV 316


>gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
          Length = 322

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LTDDER   KR
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYAFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  KA+  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKADKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L +    E++Y H       +         Y+++  N+    +G +P F+  + NP 
Sbjct: 226 YVLLEDLYSNEVSYTHMLYDDIGL---TEDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311


>gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
 gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
          Length = 331

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 26/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DD+        L++ E    +    F ++++ LV  N
Sbjct: 38  PDINMLRSLSIANRWLETDLPIGDDIKD---VTTLSESELDFYRFLFTFLSAADDLVNLN 94

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155
           +   +    +  +   Y + Q   E VHS  +  I   L   + E    Y       P +
Sbjct: 95  L-GNLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W                T+  + E + + ++  ++ EG++F   FA I  L   N
Sbjct: 154 ARKVEWL--------------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHN 199

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             +   +    I RDE++H      + N           K   ++  ++  EA  LE  +
Sbjct: 200 IFIVTCQTNDLISRDEAIHTTASCCIYNNYLPAQI----KPSTERIHSLFREAVELECEF 255

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    LN      Y+++ A+R    I + P+F        +    + ++K  NF
Sbjct: 256 ISTCAPRCSNLLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMVIEKHTNF 315

Query: 336 FETRVTEYQ 344
           FE   T Y 
Sbjct: 316 FERHSTTYS 324


>gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
 gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
          Length = 321

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 24/317 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y +  + YL      W+P E+P+ +D ++W +   L ++ +L  +R LG     ++  + 
Sbjct: 15  YQFYDDLYLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDTEQST 71

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSIT 156
             +  I     N   +  L   A  E++H+ ++  I  +L   E   ELFN   E   + 
Sbjct: 72  -GIQKIAEKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQ 130

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            K +  ++    +           AD+E L    V  +  EG+ FY+GF   L L    K
Sbjct: 131 EKVDQIMRSYYGV-----------ADKESLFMSMVGCLCLEGICFYSGFYLPLWLAGQGK 179

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           MV   E    I+RDE LH         Q+  E       + +Q++  M+ E   +E+ Y+
Sbjct: 180 MVNSGEIINLILRDEKLHTVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYS 239

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333
                   +         Y+Q+  N     + L PLF   E   NP   ++ +    K  
Sbjct: 240 KVLYENLDMI---DDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNH 295

Query: 334 NFFETRVTEYQQGAELK 350
           +FF T+   Y +  +++
Sbjct: 296 DFFSTKGNGYIKTTKVE 312


>gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
 gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
          Length = 324

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  + S   LT  E+ ++K++L   A
Sbjct: 7   RLNYKPFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHS--HLTTGEKDVVKKSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V  +    +Y+HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVAV-KSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVV 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP+I  +  +  +        +      +  ++++  L +F ++ E +  ++ FA +LS
Sbjct: 122 EVPAIKKRIAYLTE--------ALEHTKAEDPKDYVSSLILFSILIENVSLFSQFAIVLS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +INQI+ E P  + +E  +K   ++  + 
Sbjct: 174 FNRFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSI 233

Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E          G +  +N  +   +M+F  +     IGL   +  T     P  W  E
Sbjct: 234 EVEEEILDWIFENGQLENINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFARRPVDYTK 313


>gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 322

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LT+DE+   KR
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  ++    L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L +    E++Y H       +         Y+Q+  N+    +G EP F+  E NP 
Sbjct: 226 YKLLEDLYANEVSYTHMLYDDIGLS---EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311


>gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 332

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 123/354 (34%), Gaps = 34/354 (9%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +   E       K     R        ++     E +     N W+P +VP+ +DL  W 
Sbjct: 1   MTIAESVTPPKAKYNPRVRIRPINWNKVQDDKDLEVWQRLTANFWLPEKVPLSNDLKDW- 59

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             NGL+D ER +  R        +++ A    ++  +              AF ++VH+ 
Sbjct: 60  --NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTEHEEAVYTNIAFMQSVHAR 117

Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           ++  + ++L         +        +  +    L++                  E   
Sbjct: 118 SYSSVFSTLANTPSINAAYEWAVNNDVLQQRCRSVLEHY---------------FGEDPL 162

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   +   +  Y GF   L       +   A+  + I+RD+++H  +      +  +
Sbjct: 163 KRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLILRDKAVHGYYSGYKFQR-GL 221

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQ 306
           EN    T E  + +  +L +   LE+ Y+ E   P G +        +++++ AN+    
Sbjct: 222 ENHPERTAELSEFTHALLEKLFELEVLYSAELYEPLGLMP----DVVKFVKYNANKALMN 277

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +G  P F   E   +P    +      +  +FF    + Y  G     A+  WD
Sbjct: 278 LGYHPHFAAEETDVSPEILSALTPGADENHDFFSGSGSSYIMGKAEETADTDWD 331


>gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
 gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
          Length = 323

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 110/306 (35%), Gaps = 20/306 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+ DD   W +   L  +ER   ++ L      ++L     +  +
Sbjct: 17  FWDQNVRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLL 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
            + + + + +  L      E +H+ ++  I ++L        LF      P + AK    
Sbjct: 74  VQTMESAQVKAVLSFMGAMEQMHAKSYSLIFSTLSPLPRIETLFRWAEGHPLLQAKVARV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
               + + +              L       V+ E   FY+GF   L L    ++V   E
Sbjct: 134 EGRYRGVFAGDAG----------LYLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGE 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDE++H  +   +  Q+    P       +   R  L + + LE AY  E    
Sbjct: 184 IISLILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYA- 242

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDL-KKEKNFFETRV 340
                      ++ ++ A++    +G  P F    E   P +   I L  K  +FF T+ 
Sbjct: 243 --PIGRVEEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPVVLAGISLRTKNHDFFSTKG 300

Query: 341 TEYQQG 346
             Y + 
Sbjct: 301 NGYVKA 306


>gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 326

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF ++ +T+  +A 
Sbjct: 176 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAF 235

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +  + E Y++   N     +GLEP +           W   
Sbjct: 236 EAECGILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
 gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
          Length = 326

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   +TD ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T  F ++ +T+ ++A 
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLANQAF 235

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +  +   Y++   N     +GLEP             W   
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHNINPELLKETAWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris SK11]
 gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 325

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N +      + WEK     +  W+ T VP+ +DL  W+    L   ER    +     
Sbjct: 17  DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L + +    +      P+         F E+VH+ ++  I ++L    +  ELFN
Sbjct: 71  TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         + +  + +GT    +       V  V  E   FY+GF  
Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTALQKK-------VASVFLETCLFYSGFYT 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NKM+  AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 176 PLLYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQSEFRDWMYELLYK 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y+H    K  VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 236 LYENEENYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 292 GISTSSSNHDFFSQVGNSY 310


>gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
 gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
          Length = 322

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LT+DE+   KR
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +         E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIISNYHKLWG-------KEASIFDQYMARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L E    E++Y H       +         Y+Q+  N+    +G EP F+  E NP 
Sbjct: 226 YKLLEELYKNEVSYTHMLYDDIGL---TEDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1]
          Length = 331

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 26/309 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DD+        L++ E    +    F ++++ LV  N
Sbjct: 38  PDINMLRSLSIANRWLETDLPIGDDIKD---ITTLSESELDFYRFLFTFLSAADDLVNLN 94

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155
           +   +    +  +   Y + Q   E VHS  +  I   L   + E    Y       P +
Sbjct: 95  L-GNLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W                T+  + E + + ++  ++ EG++F   FA I  L   N
Sbjct: 154 ARKVEWL--------------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHN 199

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             +   +    I RDE++H      + N           K   ++  ++  EA  LE  +
Sbjct: 200 IFIVTCQTNDLISRDEAIHTTASCCIYNNYLPAQI----KPSTERIHSLFREAVELECEF 255

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    LN      Y+++ A+R    I + P+F        +    + ++K  NF
Sbjct: 256 ISTCAPRCSNLLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMVIEKHTNF 315

Query: 336 FETRVTEYQ 344
           FE   T Y 
Sbjct: 316 FEKHSTTYS 324


>gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 247

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 29/233 (12%)

Query: 109 SNPECRQYLLRQAFEEAVHSHT-FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
           ++ E + Y       EA+++             ++  +F     +PS+  KA WAL +  
Sbjct: 19  TSTETKHY------REALYATAEHSNTFIEDAQEKERIFEAIETIPSVQHKAEWALAWIN 72

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                         D     +  V Y   EG+ F   F  +  L +   M G+    + I
Sbjct: 73  --------------DDNCFAERLVAYACVEGILFSGSFCALFWLKKRGLMPGLTFSNELI 118

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE LH +FG  + N +K      +T+  +++   ++  A  +E  +  + +P G +G+
Sbjct: 119 SRDEGLHTDFGCLLYNMLK------FTRLPEERVEDIVRSAVNVEREFITDALPVGLIGM 172

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           NA    +Y++F+A+R    +G   ++  + NPF WM+ +I L+ + NFFE RV
Sbjct: 173 NAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT-MISLQGKTNFFEKRV 223


>gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
 gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
          Length = 334

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 127/308 (41%), Gaps = 17/308 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L  + +L   + LG     ++L ++  +  I
Sbjct: 22  FWEQNLKQFWIDTEYIPSKDIDSWHS---LEPEMKLAYLQVLGGLTLLDTLQSHTGMPKI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + +CR  L      E +H+ ++  I T++       E FN  +E   +  KAN  
Sbjct: 79  IDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANKI 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P        A +  +       V  E   FY+GF   L L    +MV   +
Sbjct: 139 DYYYQKMNNP-------KATKREIYMALCASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  +I         +  +++ + ++H+    E  Y  E    
Sbjct: 192 IIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVYGD 251

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +       ++Y+++ AN+    +G E  F+  + NP   ++ +     + +FF  + T
Sbjct: 252 VGLTA---DVKEYIRYNANKALMNLGFEEEFEVKDVNPIV-LNGLNVETTQHDFFSKKST 307

Query: 342 EYQQGAEL 349
            Y++  E+
Sbjct: 308 NYEKALEV 315


>gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 325

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+   
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +      + E Y++   N     +GLEP             W   
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae L20]
 gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 325

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 124 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAF 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +    E Y++   N     +GLEP +           W   
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 322

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LT+DE+   KR
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H ++   +         E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIISNYHKLWG-------KEASIFDQYMARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L E    E++Y H       +         Y+Q+  N+    +G EP F+  E NP 
Sbjct: 226 YKLLEELYKNEVSYTHMLYDDIGL---TEDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
 gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
          Length = 326

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   +TD ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T  F ++ +T+  +A 
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLASQAF 235

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +  +   Y++   N     +GLEP             W   
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHDINPELLKETAWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 325

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 124 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAF 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +    E Y++   N     +GLEP +           W   
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 336

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 134/325 (41%), Gaps = 18/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    +   +  N++W+ TE     D+  +K     T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E          IY  +   E     +  A  E  H   + +++  LG+     F  
Sbjct: 75  IAQIEV-QVKTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGITGD--FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             EVP++  +  +               G  D  + ++  + +F +  E +  ++ F  +
Sbjct: 132 VTEVPAVKDRIEYL--------DECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIM 183

Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            S  +   K  GIA   +   ++E +H  FG+++++ I+ ENP L+  EF+ + R     
Sbjct: 184 TSFDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRR 243

Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +         ++++   N+    +G+ P+F+  ++      W 
Sbjct: 244 AYEAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
            E I + K+ +FF  R T Y +  +
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHTQ 328


>gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 324

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   LT +E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTPEEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  I  H  +   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTKDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L +       K+A         V  V  E   F
Sbjct: 113 NYLLDTWVLEEPHLKFKSDKIVGNYHKLWA-------KEASVYDQYIARVSSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    +M    E  + I+ DES+H  F       ++ E      +   Q  
Sbjct: 166 YSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSENEKQRADQHM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L E    E++Y H+      +   A     Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLEELYKNEVSYTHKLYDDIGL---AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311


>gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           fallax KCTC 3537]
          Length = 326

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 26/317 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T VP+ +DL  W+     + +E+ ++    G  
Sbjct: 13  NWNNIEDELDKATWEKL---TQQFWLDTRVPISNDLRNWRDT---SAEEKKVLNLVFGGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            + ++L + + +  + +   N +    L    F E+VH+ ++  I  +L  D+ E+  ++
Sbjct: 67  TTLDTLQSQDGMAELKKDAVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NDKAEIEAVF 125

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                  A  +  LQY     +  +  GT    +       V  V  E   FY+GF   L
Sbjct: 126 E-----WADNDEYLQYKAQRINDIYHNGTPLQKK-------VASVFLETFLFYSGFYTPL 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NKM+ +AE  + I+RDES+H  +          +       E Q     +L E  
Sbjct: 174 YFVGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQSELQSWMYDLLFELY 233

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
             E  + HE   +  +G    S   ++++ AN+    +G EP+F       NP   M+ +
Sbjct: 234 ENEEKFTHELYDE--IGWT-DSVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 289

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 290 STSTANHDFFSGVGNGY 306


>gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 328

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 19/313 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
            +A   +       W+ TE     D+  WK   GL+ D +   K+ LG     ++L ++ 
Sbjct: 16  DYALMFWEQNIKQFWIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHT 72

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITA 157
            +  I  H+ + + +  L      EA+H+ ++  I T++       ++F    +   +  
Sbjct: 73  GMPKIIDHIDSLQNKAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQF 132

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA    +Y +++          D   E L       V+ E   FY+GF   L L    +M
Sbjct: 133 KAQTIDKYYRSIDKE-------DPTDEELFMALGASVLLESFLFYSGFFLPLWLCGQGQM 185

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           V  A+  + I+ DES+H  F   +   I    P    +E + +  T+L+E    E+ Y  
Sbjct: 186 VASADIIKKIIADESIHGVFVGLIAQDIFRRIP--NKEEVKARFLTLLNELYENELKYTE 243

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFF 336
           E      +       ++Y+++  N+    +G +P+F+  + NP   ++ +     + +FF
Sbjct: 244 EIYTVVGLTA---EVKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFF 299

Query: 337 ETRVTEYQQGAEL 349
             + T Y++  E+
Sbjct: 300 SKKSTNYEKATEI 312


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 140/338 (41%), Gaps = 18/338 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R     KR  N       L P +Y   +E   +  +++W+ +E     D+  +K++  LT
Sbjct: 92  RNEQSQKRKSNIFEKRINLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKTR--LT 149

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D E+  IK  +   +  E  V       IY  +  PE        A  E  H+  + +++
Sbjct: 150 DTEQSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEIGSVGATFAESEVRHADAYSHLL 208

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL+    F   ++ P+I  +  +           +      + ++++ + + +F + 
Sbjct: 209 EILGLNNE--FKNLKKKPAIMKRVQYL--------ETALKNAKSEDNKDYAESILLFSLF 258

Query: 196 FEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I++  +   M  G++   +   ++E +H +FGID+I  IK ENP  + 
Sbjct: 259 IEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKENPDWFD 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLF 313
            ++ +  + M  +A + E +       KG +         ++++   N     IG+E +F
Sbjct: 319 ADYHKTIQQMCKDAFIAESSVVDWIFEKGELDFLPKDVVNEFIKNRFNNSLESIGIEKIF 378

Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  E       W  + I   K  +FF  R   Y +  +
Sbjct: 379 EVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 416


>gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
 gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
          Length = 391

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 129/354 (36%), Gaps = 36/354 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L+ +       +++        + V +    K+           +  W P E+ +  D  
Sbjct: 2   LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFENLTEKQLSFFWRPEEIDLSIDRM 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     + + E+++   NL +    +++      LA     S+     ++   AF E +
Sbjct: 62  QYA---KMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-------------- 172
           HS ++ +I  +L +D  + F+      +I  ++    +Y   L +               
Sbjct: 119 HSRSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEML 178

Query: 173 -----------SFTTGTKDADQEF---LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                       +    K+  ++    L          E + FY  F    +     KM 
Sbjct: 179 TSHGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKME 238

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIA 274
           G A+  + I RDE+LH       I   ++        E    +++++  +  E    E  
Sbjct: 239 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEATQIFLEVYEQEKE 298

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +A      G V  ++  S   Y++ + ++R   +GL+  FK + NP+PWM++ +
Sbjct: 299 WAEHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWL 352


>gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 325

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+    ++D ER  +    G  
Sbjct: 13  NWNTIEDELDKATWEKL---TQQFWLDTRIPISNDLKNWR--GNMSDQERQTMNLVFGGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            + ++L + + +  +   + N +    L    F E+VH+ ++  I  +L  ++ E+    
Sbjct: 68  TTLDTLQSQDGMAQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEKSEI---- 122

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E     A  N  LQY     +  + TGT    +       +  V  E   FY+GF   L
Sbjct: 123 -EAIFDWADTNEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPL 174

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NKM+ +AE  + I+RDES+H  +          + P    +  Q     +L+E  
Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKLPLAEQESLQSWMYDLLYELY 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
             E  Y HE      +G +      ++++ AN+    +G EP+F       NP   M+ +
Sbjct: 235 ENEEKYTHELYDD--LGWS-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 290

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 291 STSTANHDFFSGVGNGY 307


>gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 371

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 122/316 (38%), Gaps = 18/316 (5%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P +Y    +   +   + W+ +EV    D+  + S   L   E+  +K  L   A  E 
Sbjct: 58  KPFEYPEVLQFVEAINKSFWVHSEVDFTADVQDFHS--QLEPHEKHAVKNALLAIAQIEV 115

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
            V       +Y HL  PE        A  E  HS  +  ++  LG ++   F    E+P+
Sbjct: 116 SV-KTFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FLNVIEIPA 172

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR- 213
           +  +  +           +         +E++  L +F ++ E +  ++ FA ILS  R 
Sbjct: 173 VKGRIEFL--------GNALKHANSATPKEYVSALLLFSILVENVSLFSQFAIILSFTRF 224

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              M  ++    +   DE +H N GI +IN+I+ E P L T    +   T++ E+   E 
Sbjct: 225 KGFMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESIAREG 284

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDL 329
                    G    ++      +M++  +    +I ++  +  T     P  W  E +  
Sbjct: 285 DILSWIFELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEEEVFA 344

Query: 330 KKEKNFFETRVTEYQQ 345
               +FF  R  +Y +
Sbjct: 345 NSLDDFFAKRPVDYTK 360


>gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 325

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 121/317 (38%), Gaps = 25/317 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+    ++D ER  +    G  
Sbjct: 13  NWNTIEDELDKATWEKL---TQQFWLDTRIPISNDLKTWR--GNMSDQERQTMNLVFGGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            + ++L + + +  +   + N +    L    F E+VH+ ++  I  +L           
Sbjct: 68  TTLDTLQSQDGMAQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKTE------ 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E     A  N  LQY     +  + TG+    +       +  V  E   FY+GF   L
Sbjct: 122 IEAIFDWADTNEFLQYKANRINGIYQTGSPLQKK-------IASVFLETFLFYSGFYTPL 174

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                NKM+ +AE  + I+RDES+H  +          + P     E Q     +L+E  
Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLPAEEKSELQSWMYDLLYELY 234

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
             E  Y H+      +G        ++++ AN+    +G EP+F       NP   M+ +
Sbjct: 235 ENEEKYTHQLYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGADDVNPVV-MNGI 290

Query: 327 IDLKKEKNFFETRVTEY 343
                  +FF      Y
Sbjct: 291 STSTANHDFFSGVGNGY 307


>gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus COL]
 gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus RF122]
 gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus]
 gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus]
 gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus COL]
 gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus
           aureus RF122]
 gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus aureus 04-02981]
 gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O11]
 gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O46]
 gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 323

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L++ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  +  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           ++GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L++  L E +Y         +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311


>gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
 gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
          Length = 391

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 128/354 (36%), Gaps = 36/354 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L+ +       +++        + V +    K+           +  W P EV +  D  
Sbjct: 2   LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFETLTEKQLSFFWRPEEVDLSIDRM 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     + + E+++   NL +    +++      LA     S+     ++   AF E +
Sbjct: 62  QYA---KMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-------------- 172
           HS ++ +I  +L +D  + F+      +I  ++    +Y   L +               
Sbjct: 119 HSRSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMM 178

Query: 173 -----------SFTTGTKDADQEF---LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                       +    K+  ++    L          E + FY  F    +     KM 
Sbjct: 179 TSHGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKME 238

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIA 274
           G A+  + I RDE+LH       I   ++        E    +++++  +  E    E  
Sbjct: 239 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEATQIFLEVYEQEKE 298

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +A      G V  +   S   Y++ + ++R   +GL+  FK + NP+PWM++ +
Sbjct: 299 WAEHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWL 352


>gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 336

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 18/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           S+  QL P +Y    +   +  N++W+ TE     D+  +++    T  E+ +IKR +  
Sbjct: 17  SERTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLA 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  E          IY  +   E     +  A  E  H   + +++  LG+ E   F  
Sbjct: 75  IAQIEV-QVKTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
             +VP+I  +  +  +Y              D  QE++  + +F    E +  ++ F  +
Sbjct: 132 VTDVPAIEDRIEYLDKY--------LEKSESDDKQEYVMSILLFSTFVEHVSLFSQFLIM 183

Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +S  +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +     
Sbjct: 184 MSFDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQR 243

Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323
           A   E+        +G +        + +++   N+    +G+EP+F+  +       W 
Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWF 303

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
            E I + K+ +FF  R T Y + A+
Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328


>gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
 gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
          Length = 323

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L++ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  +  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           ++GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L++  L E +Y         +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311


>gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           parasuis SH0165]
 gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parasuis SH0165]
          Length = 325

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q+ P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +   PE        A  E  H   + +++  LGL+  ++F    
Sbjct: 67  QVEVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--DMFTQIT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +            F         +F+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMKRIRYM---------EDFMREKDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   +  E+  L+T EF ++ +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAF 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +   +  + E Y+    N     +GLEP +           W   
Sbjct: 235 EAERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EIISTKETDFFNKRSTDYSK 314


>gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 354

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 28/309 (9%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL        L  +E+   +    F ++++ LV  N
Sbjct: 63  PDIGNLRSLSIMNRWTETEFVIADDLED---VGKL-KNEKNFYRFLFTFLSAADDLVNLN 118

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSI 155
           I  ++    +  +   Y   Q   EAVHS  +  I   L  ++      Y       P+I
Sbjct: 119 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 177

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K  W  +              + A+   + + ++  ++ EG++F   FA I  L   N
Sbjct: 178 LSKLEWLER--------------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNN 223

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +             K    +  T+  EA  +E  +
Sbjct: 224 LFVVTCQINNLISRDEAIHVEASCCIFKNYLAGP-----KPTTARIHTLFKEAVTVECEF 278

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    +N  +   Y+++ A+R    + + P++   + P  +   ++      NF
Sbjct: 279 LRTAAPRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNF 338

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 339 FERRNTAYS 347


>gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
 gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
          Length = 323

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L++ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  +  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDVWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           ++GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L++  L E +Y         +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311


>gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 369

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L DDER 
Sbjct: 1   EEPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERF 57

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   
Sbjct: 58  FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 117

Query: 141 DEGEL---FNMYREVPSITAKANWALQYT 166
           +  E    FN    +P +  KA+WAL + 
Sbjct: 118 EPSEREYLFNAIETLPCVKKKADWALNWI 146



 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ENPF +M E I L+ + NFFE RV EYQ+   +
Sbjct: 323 AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 355


>gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 325

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+   
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +           SF         EF+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +      + E Y++   N     +GLEP             W   
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 325

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 123/324 (37%), Gaps = 22/324 (6%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            + N          ++       +       W+ T +P+ +DL  W+    +++ ER  +
Sbjct: 3   HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 60

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
               G   + ++L + + +  +    +N +    L    F E+VH+ ++  I  +L  ++
Sbjct: 61  NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEK 119

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E+  ++    S     N  LQY     +  +  G+    +       +  V  E   FY
Sbjct: 120 VEIEKIFEWADS-----NEFLQYKANRINDIYHNGSALQKK-------IASVFLETFLFY 167

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   L     NKM+ +AE  + I+RDES+H  +          +       E Q    
Sbjct: 168 SGFYTPLYFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMY 227

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            +L+E    E  Y HE      +G        ++++ AN+    +G EP+F       NP
Sbjct: 228 DLLYELYENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNP 284

Query: 320 FPWMSEVIDLKKEKNFFETRVTEY 343
              M+ +       +FF      Y
Sbjct: 285 VV-MNGISTSTANHDFFSGVGNGY 307


>gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1
           AAJ-2005]
          Length = 358

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 139/347 (40%), Gaps = 20/347 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S     E++ + D +  +   +    L P +Y    +   +  N++W+  E     D+ 
Sbjct: 19  MSEANKPERKDDTDSQSDIF--TARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGDIQ 76

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++     T  E+  IKR +   A  E          IY  +   E     +  A  E  
Sbjct: 77  DYRVNT--TPAEQTTIKRTMLAIAQIEV-QVKTFWSDIYEDMPKAEVGNVGMTFAESEVR 133

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + +++  LG+++   F    EVP++  +  +  +Y           G+ +  QE +
Sbjct: 134 HMDAYSHLLDVLGIEDE--FEQITEVPAVQQRIEYLDEY--------LEMGSSENKQESV 183

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             + +F    E +  ++ F  + S  +   K  GIA   +   ++E +H  FG +++  I
Sbjct: 184 MGILMFSTFVEHVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVETI 243

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRC 304
           + ENP L+  +F  + +    +A   E       +  G +        + +++   N+  
Sbjct: 244 REENPDLFDDDFTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQSL 303

Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348
              G++P+F   E+      W  E I + KE +FF  R T Y +  +
Sbjct: 304 DNAGVDPVFDPDEDVVDETRWFDEDIMMTKENDFFSKRSTTYNKHTQ 350


>gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 323

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ TE  +  D+A WK+   L++ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSETEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L      ++  A++ +  +  H ++   +      A  E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112

Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            +       E P +  K++  +     L         K+A         V  V  E   F
Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           ++GF   L L    KM    E  + I+ DES+H  F       ++ E      ++  Q+ 
Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L++  L E +Y         +         Y+++  N+    +G EP F+  E NP 
Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282

Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350
             +   +D   K  +FF  +   Y     ++
Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311


>gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
 gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
          Length = 336

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 114/318 (35%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N++  +     WEK        W+ T +P+ +DL  W++   L+  ER ++ +  G  
Sbjct: 26  DWNKVEDMIDKLTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L +      +   +             F E+VH+ ++  I ++L    +  E+F 
Sbjct: 80  TLLDTLQSEEGAALMKDFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLNTKAEIEEIFE 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +  Q+                    +     + E   FY+GF  
Sbjct: 140 WTNTNEQLQYKAKKINEIYQSGHG---------------LKIKAASTMLETFLFYSGFFT 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P     E +     +  +
Sbjct: 185 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMD 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E  Y      +  VG      + ++++ AN+    +G +PLF  T        M+ 
Sbjct: 245 LYQNEAKYTQSLYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 301

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 302 ISTGTSNHDFFSQVGNGY 319


>gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 327

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 123/324 (37%), Gaps = 22/324 (6%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            + N          ++       +       W+ T +P+ +DL  W+    +++ ER  +
Sbjct: 5   HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 62

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
               G   + ++L + + +  +    +N +    L    F E+VH+ ++  I  +L  ++
Sbjct: 63  NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEK 121

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E+  ++    S     N  LQY     +  +  G+    +       +  V  E   FY
Sbjct: 122 VEIEKIFEWADS-----NEFLQYKANRINDIYHNGSALQKK-------IASVFLETFLFY 169

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   L     NKM+ +AE  + I+RDES+H  +          +       E Q    
Sbjct: 170 SGFYTPLYFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMY 229

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            +L+E    E  Y HE      +G        ++++ AN+    +G EP+F       NP
Sbjct: 230 DLLYELYENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNP 286

Query: 320 FPWMSEVIDLKKEKNFFETRVTEY 343
              M+ +       +FF      Y
Sbjct: 287 VV-MNGISTSTANHDFFSGVGNGY 309


>gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain
           [Arabidopsis thaliana]
          Length = 243

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 23/196 (11%)

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +T KA WA+++                  +   +  V +   EG++F   F  I  L + 
Sbjct: 51  VTKKAEWAMKWING--------------SQSFAERIVAFACVEGIFFSGSFCSIFWLKKR 96

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             M G+    + I RDE LH +F   + + ++       TK  + + + ++ +A  +E  
Sbjct: 97  GLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKFDEDRLKAIVCDAVEIERE 149

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +  + +    VG+N     QY++F+A+R    +G   ++  T NPF WM E+I L+ + N
Sbjct: 150 FVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTN 207

Query: 335 FFETRVTEYQQGAELK 350
           FFE RV EYQ+ + + 
Sbjct: 208 FFEKRVGEYQKASVMS 223


>gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 320

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 28/330 (8%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +       W+ TE  +  D+A WKS   LT+ E+   K+
Sbjct: 6   WNTQEDMTNMF----------WRQNIAQMWVETEFKVSKDIASWKS---LTEAEQDTFKK 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE 142
            L      ++  A++ +  I  H  +   +         E +H+ ++ +I T+L    + 
Sbjct: 53  ALAGLTGLDTHQADDGMPLIMLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSKET 112

Query: 143 GELFN-MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
            EL +    E P +  K+   +     L         K+A         V  V  E   F
Sbjct: 113 DELLDVWVLEEPHLKYKSEKIVGTYHKLWG-------KEASIYDQYMARVASVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           ++GF   L L    +M    E  + I+ DES+H  F       ++ E      ++  ++ 
Sbjct: 166 FSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             +L +    E +Y         +         Y+++  N+    +G EP F+  E   P
Sbjct: 226 YQLLEDLYANEASYTRSLYDPIGL---TDDVMNYVRYNGNKALSNLGFEPYFEEREFS-P 281

Query: 322 WMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
            +   +D   K  +FF  +   Y     ++
Sbjct: 282 IIENALDTSTKNHDFFSVKGDGYVLALNVE 311


>gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
          Length = 333

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 131/307 (42%), Gaps = 15/307 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L+ + R   K+ LG     ++L ++  +  I
Sbjct: 22  FWEQNLRQFWIDTEYIPSKDIDSWHS---LSPEMRETYKKVLGGLTLLDTLQSHTGMPKI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + +CR  L      E++H+ ++  I T++   E   E+F   ++   +  KAN  
Sbjct: 79  IDHIESLQCRSVLSYMCMMESIHAKSYSTIFTTVASTEEINEIFRWVQDNQYLQFKANKI 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y Q L++P       +A    +    V  V  E   FY+GF   L L    +MV  ++
Sbjct: 139 DEYYQCLNNP-------NATPREIYMALVASVFLESYLFYSGFFLPLWLSGHGQMVASSD 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  +I  E   +  +  +++   + +E    E+ +  E    
Sbjct: 192 IIKKIIADESIHGVFVGKLAQEIFEEMSFVEKESVKKEIMNLFYELYENELKFTDEIYSD 251

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +       ++Y+++  N+    +G +  F+  E     ++ +     + +FF  + T 
Sbjct: 252 VGL---TSEVKEYIRYNGNKALMNLGFKEEFEIKEVNAIVLNGLNVETTQHDFFSKKSTN 308

Query: 343 YQQGAEL 349
           Y++  E+
Sbjct: 309 YEKTLEV 315


>gi|227502192|ref|ZP_03932241.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|227077016|gb|EEI14979.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
          Length = 337

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 36/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D   W   + +   ER +  R     
Sbjct: 28  NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SCMDPAERDLTIRVFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++  +              AF +AVH+ ++  I ++L   E   + + 
Sbjct: 82  TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  +A   + +                  +      V   +   +  Y GF  
Sbjct: 142 WAVDNPVLQQRATSVMVHY---------------YGDDPLKRKVASTLLSSLLLYAGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      K+   A+  + I+RD+++H  +      +          +E ++ +  ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEARREEMREFTFDLVRK 246

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
              LE+ Y+ E   P G           ++++ AN+    +G   LF Y E   NP    
Sbjct: 247 LYDLEMRYSGELYEPYGL----MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILA 302

Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +      +  +FF    + Y  G     ++  WD
Sbjct: 303 ALTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336


>gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
 gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
          Length = 324

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 18/321 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   
Sbjct: 6   ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A  E  V       IY  L  PE     +  A  E  H   + +++  LGL++   F   
Sbjct: 64  AQVEVAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E+P++  +  +       L+S    TG++D ++ F   + +F +  E +  ++ F  +L
Sbjct: 121 EEIPALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIML 172

Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           S  +  K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA
Sbjct: 173 SFDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEA 232

Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324
              E          G +     P  + +++   N     + ++P+F+          W  
Sbjct: 233 YDAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFY 292

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
           E I L K  +FF  R T Y +
Sbjct: 293 EEILLTKGNDFFSKRSTSYSK 313


>gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
 gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
          Length = 317

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L        WEK        W+ T +P+ +DL  WK    + ++E  ++++  G  
Sbjct: 9   NWNVLDDALDKAVWEKL---TEQFWLDTRIPLSNDLNDWK---KMKEEEHALVEKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L + + + A+ +          L    F E+VH+ ++  I ++L       E+F 
Sbjct: 63  TLLDTLQSVDGMSALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTLNTPAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA       +                +         V  E   FY+GF  
Sbjct: 123 WTEKNEYLQYKAEKICAIYR---------------GDDALMKKAASVFLESFLFYSGFYA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     N++  +AE  + I+RDES+H  +                 ++ + +   +L++
Sbjct: 168 PLYFLGHNRLNNVAEIIKLILRDESVHGTYIGYKFQIRYRALAEEEQEKLKFEIVNLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y HE   +  +G        ++++ AN+    +G EPLF+ T    NP   M+
Sbjct: 228 LYQNEEKYTHELYDE--LGWT-EDVGIFLRYNANKALMNLGFEPLFEETATDVNPVV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTSTSNHDFFSQVGNGY 302


>gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM]
 gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella
           anatipestifer RA-GD]
          Length = 324

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 122/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  + S   L   E+  +K  L   A
Sbjct: 7   RINYKPFEYPEVMQYIEAINKSFWVHSEVDFTADIQDFHS--QLEPHEKNAVKNALLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVSV-KTFWGNLYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FLNVI 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P+I  + ++                     +E++  L +F ++ E +  ++ FA ILS
Sbjct: 122 ENPAIRKRIDFLT--------DVLRNSNSSTPKEYVSSLLLFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+IK E P L  +E  +    ++  + 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSV 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            LE          G    L+      +M++  +    +IG+  +F  TE    P  W  E
Sbjct: 234 ELEAEILDWIFEMGDLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           argentinum KCTC 3773]
          Length = 325

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 117/301 (38%), Gaps = 22/301 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    ++  E+  +    G   + ++L + + +  + 
Sbjct: 27  WEKLTQQFWLDTRIPISNDLRHWR--GNMSPQEQKTMNLVFGGLTTLDTLQSQDGLAQLK 84

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
               N +    L    F E++H+ ++  I  +L  ++ E+     E     A  N  LQY
Sbjct: 85  FDSLNQKEEAVLNNIQFMESIHAKSYSSIFETL-NEKSEI-----EAIFDWADNNEFLQY 138

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                +  + TGT    +       +  V  E   FY+GF   L     N+M+ +AE  +
Sbjct: 139 KANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNRMLNVAEIIK 191

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+RDES+H  +          +       E Q     +L++    E  Y HE      +
Sbjct: 192 LIIRDESVHGTYIGYKFQIGFNQLSEDEQAELQAWMYDLLYDLYENEEKYTHELYDD--L 249

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTE 342
           G        ++++ AN+    +G EP+F       NP   M+ +       +FF      
Sbjct: 250 GW-YEQVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGLSTSTANHDFFSGVGNG 307

Query: 343 Y 343
           Y
Sbjct: 308 Y 308


>gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 245

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +++   LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA+HS ++QYII S+   +       R++     + +  L    +  +  +     
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+   
Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLF 229


>gi|306834752|ref|ZP_07467817.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
 gi|304569364|gb|EFM44864.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
          Length = 337

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 36/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D   W   + +   ER +  R     
Sbjct: 28  NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SRMDPAERDLTIRVFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++  +              AF +AVH+ ++  I ++L   E   + + 
Sbjct: 82  TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  +A   + +                  +      V   +   +  Y GF  
Sbjct: 142 WAVDNPVLQQRATSVMVHY---------------YGDDPLKRKVASTLLSSLLLYAGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      K+   A+  + I+RD+++H  +      +          +E ++ +  ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEDRREEMREFTFDLVRK 246

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
              LE+ Y+ E   P G           ++++ AN+    +G   LF Y E   NP    
Sbjct: 247 LYDLEMRYSGELYEPYGL----MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILA 302

Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +      +  +FF    + Y  G     ++  WD
Sbjct: 303 ALTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336


>gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
 gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
          Length = 324

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 123/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +     W+ +EV    D   + S   L   ER  IK +L   A
Sbjct: 7   RINYKPFEYPEILTFTEAINKAFWVHSEVDFTADTQDFHSHLNL--AERTAIKHSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       IY H   PE        A  E  HS  +  ++  LG ++   F    
Sbjct: 65  QIEVAV-KTFWGDIYDHFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++P I  + ++         S +         + ++  L +F ++ E +  ++ FA ILS
Sbjct: 122 DIPVIKGRVDYL--------SNALKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI ++N+IK E P  +++E  Q+ + ++  + 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSI 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            +E         +G +  +       +M++  +    +IG   ++  T     P  W  E
Sbjct: 234 EVESQILDWIFEQGEIETIKKKDLLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 325

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 125/321 (38%), Gaps = 19/321 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
              Q+ P +Y    E   +  +++W+ TE     D+  +K+   +T  ER  + R +   
Sbjct: 8   RRIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAI 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           +  E  V       +YR+   PE        A  E  H   + +++  LG++  E+F+  
Sbjct: 66  SQVEVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMN--EMFSQI 122

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E P++  +  +            F        + F+  L +F +  E +  +  F  I+
Sbjct: 123 TEYPALMRRIEYM---------EDFMRDKDIGRERFVLSLVMFSLFVEHISLFGQFLIIM 173

Query: 210 SLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           S  +  N   GI+   +   ++E +H  FGI +   I+ E+P L+T +F  + + + + A
Sbjct: 174 SFNKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHA 233

Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324
              E          G +      + E Y+    N     +G+   +           W  
Sbjct: 234 LEAERGILRWIFEDGDLDFITLDTVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFD 293

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
             I   KE +FF  R T+Y +
Sbjct: 294 IEILSGKEGDFFYKRSTDYSK 314


>gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
 gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
          Length = 324

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 137/321 (42%), Gaps = 18/321 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   
Sbjct: 6   ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A  E  V       IY  L  PE     +  A  E  H   + +++  LGL++   F   
Sbjct: 64  AQVEVAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E+P++  +  +       L+S    TG++D ++ F   + +F +  E +  ++ F  +L
Sbjct: 121 EEIPALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIML 172

Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           S  +  K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA
Sbjct: 173 SFDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEA 232

Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324
              E          G +     P  + +++   N     + ++P+F+          W  
Sbjct: 233 YDAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFY 292

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
           E + L K  +FF  R T Y +
Sbjct: 293 EEVLLTKGNDFFSKRSTSYSK 313


>gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 322

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 30/331 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N + D+  +           +    +  W+ +E  +  D+A WK    LTDDE+     
Sbjct: 6   WNTQEDMTNMF----------WRQNISQMWVESEFKVSKDIASWK---ELTDDEKFTFNH 52

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---D 141
            L      ++  A++ +  I  H  +   +         E +H+ ++ +I T+L      
Sbjct: 53  ALAGLTGLDTHQADDGMPLIGLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSAET 112

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              L N     P +  K+   +     L         K+A         V  V  E   F
Sbjct: 113 NDLLDNWVVNEPHLKFKSEKIVSRYHKLWG-------KEATIYDQYMARVASVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    +M    E  + I+ DES+H  F       ++ E          ++ 
Sbjct: 166 YSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQSLRNEMTEDEKIRADKEM 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L E    E +Y      +  +         Y+Q+  N+    +G EP F+    NP 
Sbjct: 226 YDLLKELYANEESYTKMLYDRVGL---TEDVLNYVQYNGNKALANLGFEPYFEEKGFNPI 282

Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350
             +   ++   K  +FF  +   Y     ++
Sbjct: 283 --IENALNTSTKNHDFFSVKGDGYVIALNVE 311


>gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
 gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
          Length = 327

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 17/307 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  WKS   L+ + + + KR LG     ++L ++  +  +
Sbjct: 20  FWEQNLRQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHTGMPKL 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      EA+H+ ++  I T++       ELF+       +  KA+  
Sbjct: 77  LDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQFKASTI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P           E L       V+ E   FY+GF   L L    +MV  A+
Sbjct: 137 DKYYRALDVP-------KVSNEVLFMGLAASVLLESFLFYSGFFMPLWLAGQGQMVASAD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +   +  + P    ++ + K   +L E    E+ Y  E   +
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDVYKKLP--NPEKCKAKLEALLMELYENELKYTDELYTE 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +       ++Y+++ AN+    +G E LF+        ++ +     + +FF  + T 
Sbjct: 248 VGLTA---EVKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHDFFSKKSTN 304

Query: 343 YQQGAEL 349
           Y++  E+
Sbjct: 305 YEKSMEV 311


>gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 334

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 115/341 (33%), Gaps = 31/341 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           ++   AR        ++     E +     N W+P +VP+ +DLA W+    LTD ER +
Sbjct: 14  RKDPAARLRPINWNRVQDDKDLEVWNRLTANFWLPEKVPLSNDLADWR---RLTDLEREL 70

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             +        +++ A+   ++  +              AF +AVH+ ++  + ++L   
Sbjct: 71  TMKVFTGLTMLDTVQASVGEISQIQDARTEHEEAVYTNIAFMQAVHAKSYSSVFSTLSNT 130

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
                 +        + A++   L++                  +          +    
Sbjct: 131 PDIDAAYQWAVTNDILQARSKAVLKHY---------------YGDVPLKRKAAATLLSSF 175

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             Y GF   L       +   A+  + I+RD+++H  +      +          ++ + 
Sbjct: 176 SLYAGFYLPLHFASRGILTNTADMVRLILRDKAVHGYYSGYKFQRGVETYDTATQRQMKA 235

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
               +L E   LE+ Y+        +         ++++ AN+    +G    F + E  
Sbjct: 236 FVFELLDELYQLELRYSEALYQPLGLY---DDVANFIRYNANKALMNLGYPQRFNHDETA 292

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
             P    +      +  +FF    + Y  G     A+  WD
Sbjct: 293 FKPEILAALTPGSDENHDFFSGSGSAYVIGKAEDTADEDWD 333


>gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus]
          Length = 219

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 22/204 (10%)

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           FN    +P +  KA+WAL +               + Q    +  V +   EG++F   F
Sbjct: 24  FNAIDNLPCVKKKADWALNWI-------------SSKQANFGERVVAFAAVEGIFFSGSF 70

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L +   M G+    + I RDE LH +F   +          L  K  Q++   ++
Sbjct: 71  ASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFKY-------LVQKPSQERVIEII 123

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA L+E  +  + +P   +G+N     QY++F+A+R   ++G++ ++  T+NPF +M E
Sbjct: 124 REAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM-E 181

Query: 326 VIDLKKEKNFFETRVTEYQQGAEL 349
            I L+ + NFFE +V EYQ+   +
Sbjct: 182 FISLEGKTNFFEKKVGEYQKWGVM 205


>gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 322

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 109/311 (35%), Gaps = 19/311 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H  +   +         E +H+ ++  I TSL   +   +         P +  KA  
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQFKAKL 133

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y   L  P   T         L    V  V  E   FY+GF   L L    K+    
Sbjct: 134 IEDYYMKLFKPEVPT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +F      ++         +  +++   +L +    E+ Y  +   
Sbjct: 187 EIIRKILLDETIHGSFTGFDAQELFKTLTPEEQERAEKEMYKLLLDLYENELKYTKDIYD 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339
           +  +       + Y+++ ANR    +G    F+  E NP   +   ++   K  +FF  +
Sbjct: 247 EIGLY---EDVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVK 301

Query: 340 VTEYQQGAELK 350
              Y     ++
Sbjct: 302 GDGYVVSMNVE 312


>gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
 gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
          Length = 389

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 140/353 (39%), Gaps = 26/353 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N   +S +        + +     +   + +    ++    E      +  W P EV 
Sbjct: 5   LTNENNMSTVFNTTPVDVLVEPMFFGSGLGIARYDIQRHKVFEELCEKQLSFFWRPEEVN 64

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D A +   N L   ++ +   NL + +  +S+       A+   +S+P    ++   
Sbjct: 65  LMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATW 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------- 173
            F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       
Sbjct: 122 TFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKTRLYQNAL 181

Query: 174 -----FTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQY 224
                F+ G K A  E ++ L++        E + FY  FA   +  +    M G A+  
Sbjct: 182 EEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIM 241

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETM 280
           ++I RDE LHL     +I Q+++           +E +Q++  +  E    E  +A    
Sbjct: 242 KFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWATHLF 301

Query: 281 PKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             G    LN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++  
Sbjct: 302 KDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 354


>gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
 gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
          Length = 364

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 55  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++  A    L    H      +      AF +++H+ ++  I ++L   E E+   Y
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 167

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R          WA+         +      +++    + +     +   +  Y GF   L
Sbjct: 168 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 215

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 KM+  A+  + I+RD+++H  +      +          K  ++ +  +L    
Sbjct: 216 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 275

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328
            LE+ Y+ +         +      ++++ AN+    +G    +   E +  P +   + 
Sbjct: 276 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 332

Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352
               +  +FF    + Y  G  ++ D
Sbjct: 333 PAADENHDFFSGSGSSYIMGKSVETD 358


>gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 9   PIQAG--EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           P+ A    K VN DDKR++N  +DVNQL P KY WAWE +L+A  NHW P ++ M  D+ 
Sbjct: 38  PVAAPLDTKPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVH 97

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   + LT +ER + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+
Sbjct: 98  DYH--HKLTLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAL 155

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+ T+Q+ I ++GLD+ E++N YR VP I  K   A +   ++         +D  + FL
Sbjct: 156 HTWTYQHCIETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFL 215

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSL 211
                F  +FEG+WFY GF+ I +L
Sbjct: 216 MAYLFFAGIFEGVWFYNGFSPIFAL 240


>gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
 gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
          Length = 364

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 55  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++  A    L    H      +      AF +++H+ ++  I ++L   E E+   Y
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 167

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R          WA+         +      +++    + +     +   +  Y GF   L
Sbjct: 168 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 215

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 KM+  A+  + I+RD+++H  +      +          K  ++ +  +L    
Sbjct: 216 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 275

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328
            LE+ Y+ +         +      ++++ AN+    +G    +   E +  P +   + 
Sbjct: 276 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 332

Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352
               +  +FF    + Y  G  ++ D
Sbjct: 333 PAADENHDFFSGSGSSYIMGKSVETD 358


>gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
 gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
          Length = 324

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 119/320 (37%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +    +W+ +EV    D   + S   L+  ER  +K +L   A
Sbjct: 7   RINYKPFEYPEILTFTSAINKAYWVHSEVDFTADTQDFHS--HLSPAERSAVKNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y H   PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVAV-KTFWGNLYDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P I  +  +                  +  ++++  L +F ++ E +  ++ FA ILS
Sbjct: 122 EIPVIKQRVEYL--------GGVLKDTRSEDRKKYVISLILFTILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI ++N I+ E P  +  E   +    + E+ 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESI 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E         +G +  +       +M+F  +    +IG  PLF  +     P  W  E
Sbjct: 234 EVEERILDWIFSEGEIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
 gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
          Length = 359

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 50  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 103

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++  A    L    H      +      AF +++H+ ++  I ++L   E E+   Y
Sbjct: 104 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 162

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R          WA+         +      +++    + +     +   +  Y GF   L
Sbjct: 163 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 210

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 KM+  A+  + I+RD+++H  +      +          K  ++ +  +L    
Sbjct: 211 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 270

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328
            LE+ Y+ +         +      ++++ AN+    +G    +   E +  P +   + 
Sbjct: 271 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 327

Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352
               +  +FF    + Y  G  ++ D
Sbjct: 328 PAADENHDFFSGSGSSYIMGKSVETD 353


>gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 500

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 19/210 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ +   WE Y  A    W   EV +  D++ W+    LT DER  
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E    FN       I AKA+W L++    ++P               +        EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------------FSERLAAVAAVEG 470

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
           ++F + FA I  L +   + G+    + I 
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELIS 500


>gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
 gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
          Length = 379

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 129/316 (40%), Gaps = 26/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A+   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148

Query: 158 KANWALQYTQTLSSPS------------FTTGTKDADQEFLQDLFVFY---VVFEGMWFY 202
           +A    +Y   +   +            F  G K A  E ++ L++        E + FY
Sbjct: 149 RAESIGRYYDDVIEKTRLYQNALEEYHEFGEGVKQAKYELMRSLYLCLHVINALEAIRFY 208

Query: 203 TGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEF 257
             FA   +  +    M G A+  ++I RDE LHL     +I Q+++           +E 
Sbjct: 209 VSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQEC 268

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY 315
           +Q++  +  E    E  +A      G    LN  +   ++ ++   R  Q GL  P+   
Sbjct: 269 EQEAVDIFMEVNRQEKEWAAHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDA 328

Query: 316 -TENPFPWMSEVIDLK 330
            T +P+PW+ E ++  
Sbjct: 329 PTRHPYPWIREYLNSD 344


>gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 338

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 111/306 (36%), Gaps = 26/306 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T +P+ +D   W+    LT +ER ++ +      + ++L +      + 
Sbjct: 42  WEKLTSQFWLDTRIPVSNDRDDWR---ILTKEERDVVNKAFAGLTALDTLQSEEGANVMR 98

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +        L    F E+VH+ ++  I  SL       E+F+         A  N  L
Sbjct: 99  DAVRTQHEEAVLNNILFMESVHAKSYSTIFISLNTTREIDEIFDW--------ANNNEYL 150

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           QY     +  +  GT    +       V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 151 QYKARRINEIYQNGTGLQQK-------VASVFLETYLFYSGFYAPLWYLGNNKLENVAEI 203

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E +     +L +    E  Y  E   + 
Sbjct: 204 IKLIIRDESVHGTYLGYKFQLGYNQLSIDEQNELKDWMYALLFDLMENEEKYTEEIYTQ- 262

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDLK-KEKNFFETRV 340
            VG        ++ + AN+    +G EP +     EN  P +   I       +FF    
Sbjct: 263 -VGWTKE-VNTFVHYNANKALQNLGFEPFYPDGTAENVNPIVMNGISTDSSNHDFFSQVG 320

Query: 341 TEYQQG 346
             Y  G
Sbjct: 321 NSYLMG 326


>gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1]
 gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1]
 gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1]
 gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1]
 gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type
           1.1]
          Length = 314

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 122/320 (38%), Gaps = 38/320 (11%)

Query: 38  KYGWAWE--------KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           KY + +E            +  N W+ TE P+ DD         L+  E    +    F 
Sbjct: 13  KYKYFYETECPDLDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +    +  +   Y + Q   E VHS  +  I   L  ++      Y
Sbjct: 70  SAADDLVNVNL-GDLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGY 128

Query: 150 RE----VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            E     P++  K +W  +              + A  E + + +V  ++ EG++F + F
Sbjct: 129 VEGALGDPAVRRKVDWLER--------------RVAAAESVAEKYVLMILIEGIFFSSSF 174

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTM 264
           A I  L   N  V   +    I RDE++H      +  N +  E P         +   +
Sbjct: 175 AAIAYLRTHNLFVVTCQTNDLISRDEAVHTAASCCIFDNYLGGERP------PPARIYEL 228

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             EA  L  A      P+G   L+  +   Y+++ A+R    I L PLF        +  
Sbjct: 229 FREAWKL-SASLFGCAPRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPL 287

Query: 325 EVIDLKKEKNFFETRVTEYQ 344
            ++  +K  NFFE R T Y 
Sbjct: 288 ALMTAEKHTNFFERRSTNYT 307


>gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 296

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 23/256 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   + +   L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   +   I A
Sbjct: 90  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149

Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L   +        GT +             ++ L    +   V E + F
Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGVDDPEMAEIAVEL 269

Query: 258 QQKSRTMLHEATLLEI 273
           Q +   +  +A   E 
Sbjct: 270 QDECFKLFKKAAEQEK 285


>gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
 gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
          Length = 379

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 130/316 (41%), Gaps = 26/316 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A+   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148

Query: 158 KANWALQYTQTLSSPS------------FTTGTKDADQEFLQDLFVFY---VVFEGMWFY 202
           +A    +Y   +   +            F+ G K A  E ++ L++        E + FY
Sbjct: 149 RAESIGRYYDDVIEKTRLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFY 208

Query: 203 TGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEF 257
             FA   +  +    M G A+  ++I RDE LHL     +I Q+++           +E 
Sbjct: 209 VSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQEC 268

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY 315
           +Q++  +  E    E  +A      G    LN  +   ++ ++   R  Q GL  P+   
Sbjct: 269 EQEAVDIFMEVNRQEKEWAGHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDA 328

Query: 316 -TENPFPWMSEVIDLK 330
            T +P+PW+ E ++  
Sbjct: 329 PTRHPYPWIREYLNSD 344


>gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
 gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
          Length = 331

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 115/328 (35%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 22  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    L    H      +      AF +++H+ ++  I ++L   E   E + 
Sbjct: 76  TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    L   ++               E      +   +   +  Y GF  
Sbjct: 136 WAVGNDVLQQRVTTVLCEYES---------------EDPLKRKIAATMLSSLLLYAGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      KM+  A+  + I+RD+++H  +      +          K  ++ +  +L  
Sbjct: 181 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326
              LE+ Y+ +         +      ++++ AN+    +G    +   E +  P +   
Sbjct: 241 LYDLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAA 297

Query: 327 ID--LKKEKNFFETRVTEYQQGAELKWD 352
           +     +  +FF    + Y  G  ++ D
Sbjct: 298 LSPAADENHDFFSGSGSSYIMGKSVETD 325


>gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 318

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 131/325 (40%), Gaps = 31/325 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++      + W+K   A +  W+ T VP+ +DLA W+    L+  E+ +IK+ +G  
Sbjct: 9   NWNKIEDELDDYVWDK---ATSQFWLDTRVPISNDLADWR---ELSSVEQEVIKKVVGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147
           A  ++L +   V A+   +   +    L    F E++H+ ++  I+TSL       E+++
Sbjct: 63  ALLDTLQSEKGVNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSLNSIKSINEIYD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                       +  +QY     +  + TG     +       +  +  EG+ +Y+ F  
Sbjct: 123 WMNN--------DERMQYKAKRINDIYKTGNALQKK-------IASIFLEGILYYSNFFA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L    +NK+  +AE  + I+RDES+H  +          E P     +       +L +
Sbjct: 168 PLWYRGSNKLANLAELIKLIIRDESVHGTYLGYKFQLTYNELPEEEQNKLLDWMYPLLED 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWM 323
               E+AY  E      +   A   + ++++ AN+    +G    +   +    NP   M
Sbjct: 228 LMENELAYTEEIYSHIGI---AEDVKTFVRYNANKSLQNMGFPAYYDNADLADVNPIV-M 283

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348
           + +       +FF      Y  G  
Sbjct: 284 NGISIETSNHDFFSQVGAGYLMGDA 308


>gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1]
 gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus
           1]
 gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 338

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 129/350 (36%), Gaps = 36/350 (10%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKY------GWAWEKYLSACNNHWMPTEVPM 61
           +P  A     +++ +    A + V    P +Y               +  N W+ +E+  
Sbjct: 5   APTDAAVPGGSLERREPAGAAAAVTP-DPERYFYTTQCPDINHLRSLSILNRWLESELVF 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D       +GLTDDE    +    F ++++ LV  N+   +       +   Y + Q 
Sbjct: 64  AGDEED---VHGLTDDELNFYRFLFTFLSAADDLVTENL-GGLSGLFPQKDILHYYVEQE 119

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTG 177
             E VHS  +  I   L  +  +    Y       P+I  K  W     Q          
Sbjct: 120 AIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQAC-------- 171

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                 E + + F+  ++ EG++F   FA I  L   N +    +    I RDE++H   
Sbjct: 172 ------ESVPEKFILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLISRDEAVHTTA 225

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQ 294
              + N     +     K   ++   +  EA  +EI +     P     L+A    + E 
Sbjct: 226 SCYIYNNYLGGH----RKPTAERVYRLFREAVDIEIGFIRSQAPANSRVLDAAALDAIEN 281

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           Y++F A+R    I ++PLF        +   ++  +K  NFFE R T Y 
Sbjct: 282 YVRFSADRLLVLIKMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAYA 331


>gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
 gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
          Length = 331

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 125/308 (40%), Gaps = 17/308 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W   N L  + R   K+ LG     ++L ++  +  +
Sbjct: 20  FWEQNLKQFWIDTEYIPSKDIDSW---NSLEQEMREAYKKALGGLTLLDTLQSHTGMPKV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + +  L      E +H+ ++  I T++       E+FN  +E   +  KA   
Sbjct: 77  IDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKARTI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L         KDA  E +       V+ E   FY+GF   L L    +M    +
Sbjct: 137 DSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGASCD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  +   +      +  ++  + +++     E+ Y  E   +
Sbjct: 190 IIKKIIADESIHGVFVGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYTDEVYTE 249

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +       ++Y+++ AN+    +G +  F+  E NP   ++ +     + +FF  + T
Sbjct: 250 IGLS---GDVKEYIRYNANKALMNLGFDEEFEVKEVNPIV-LNGLNVETTQHDFFSKKST 305

Query: 342 EYQQGAEL 349
            Y++  E+
Sbjct: 306 NYEKALEI 313


>gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424]
 gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424]
          Length = 322

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 107/315 (33%), Gaps = 27/315 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H  +   +         E +H+ ++  I TSL   +   +           +  KA  
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKAQL 133

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y              +     L    V  V  E   FY+GF   L L    K+    
Sbjct: 134 IESYY-------LKLFKPEVPTYDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSG 186

Query: 222 EQYQYIMRDESLHLNF----GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           E  + I+ DE++H +F      ++   +  E      KE      T+L +    E+ Y  
Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTPEEQEKANKEM----YTLLLDLYENELKYTK 242

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNF 335
           +   +  +       + Y+++ ANR    +G    F+  E NP   +   ++   K  +F
Sbjct: 243 DIYGEIGL---FEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTSTKNHDF 297

Query: 336 FETRVTEYQQGAELK 350
           F  +   Y     ++
Sbjct: 298 FSVKGDGYVVSMNVE 312


>gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus]
          Length = 192

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 25/214 (11%)

Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   D  E    FN    +P +  KA+WALQ+              D +  F + 
Sbjct: 1   SLLINTYIRDLKERDYLFNAIETLPYVKRKADWALQWI------------SDTNSTFAER 48

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH NF   + +Q++  
Sbjct: 49  LVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQK- 106

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 K    + + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 107 ------KPSADRVKDIITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLG 160

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           +  +++  ENPF +M E I L+ + NFFE RV E
Sbjct: 161 IPKVYE-AENPFDFM-EFISLEGKTNFFEKRVAE 192


>gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
          Length = 322

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 109/311 (35%), Gaps = 19/311 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H  +   +         E +H+ ++  I TSL   +   +         P +  KA  
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQYKAKL 133

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y   L  P   T         L    V  V  E   FY+GF   L L    K+    
Sbjct: 134 IEDYYMKLFKPEVPT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +F      ++         +  +++   +L +    E+ Y  +   
Sbjct: 187 EVIRKILLDETIHGSFTGFDAQEVFKTLTAEEQERAEKEMYKLLLDLYENELVYTKDIYS 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339
           +  +       + Y+++ ANR    +G    F+  E NP   +   ++   K  +FF  +
Sbjct: 247 EIGLY---EEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVK 301

Query: 340 VTEYQQGAELK 350
              Y     ++
Sbjct: 302 GDGYVVSMNVE 312


>gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + +++ ++G+ E E ++ + +   +  K ++                  ++ ++  
Sbjct: 1   HVAAYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYM------------QGFNVNSKEDIA 47

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + + VF    EG+  +  FA +L+  R NKM G+ +   + +RDE+LH N  I +  +  
Sbjct: 48  KTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFI 107

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
            ENP +WT   +++           E A+       G   GL A   + Y++FIANRR  
Sbjct: 108 KENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIANRRLI 167

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           Q+GLEP++   +NP  W+  +++  +  NFFE R TEY + +
Sbjct: 168 QLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKAS 209


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 133/323 (41%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P  Y    E   +  +++W+ TE     D+  +K+   L++ E+  IK  +   +
Sbjct: 107 RLNLKPYDYPALTEYVDAIRHSYWIHTEFNYTSDIQDFKAY--LSETEKSAIKNTMLAIS 164

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       IY+ +  PE        A  E  H   + +++  LGL+    F   +
Sbjct: 165 QIEVAV-KTFWGDIYKKMPKPEIGAVGSTFAESEVRHHDAYSHLLEILGLNNE--FENLK 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + P +  + N+           +      + ++EF + + +F +  E +  ++ F  I++
Sbjct: 222 KNPVMMRRVNYL--------EGALKNVKSEDNKEFSESIILFSLFIEHVSLFSQFLIIMA 273

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N + GI+   +   ++E +H +FGID+I  IK ENP  + ++     + M  EA 
Sbjct: 274 FNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKEENPDWFDEDHSLMVQEMCEEAF 333

Query: 270 LLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
           + E         KG +     +  +++++   N+    IG+  +F+          W  +
Sbjct: 334 ISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGSIGIAKIFEIDATLLAQTDWFDD 393

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I   K  +FF  R   Y +  +
Sbjct: 394 EIIGTKHGDFFVKRSINYSKRTK 416


>gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 210

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 22/211 (10%)

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LFN    +P +  KANWAL +                +     +  V +   EG++F
Sbjct: 7   RDFLFNAIETLPCVRKKANWALNWINH-------------ESATFPERVVAFAAVEGIFF 53

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  L +   M G+    + I RDE LH +F   +         H+  K   ++ 
Sbjct: 54  SGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFK-------HIVQKPSFERV 106

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           ++++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G E ++  +ENPF 
Sbjct: 107 KSIVMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFS 165

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +M   I +  + NFFE +V EY++   ++ D
Sbjct: 166 FMD-FISMMGKTNFFEKKVGEYKKFGVMEED 195


>gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 296

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 24/281 (8%)

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +S+      +A   + S PE    +L   F E +HS ++ YII ++  D  E+F+   
Sbjct: 1   MLDSVQGRGPGMAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTIL 60

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGT-----------------KDADQEFLQDLFVFY 193
           E   I  +A+   +      + +    T                 +   +  L       
Sbjct: 61  EDEKILDRASSVTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDRRELKRKLYRAVANV 120

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NP 250
            + EG+ FYT FA   + G    M G A+    I RDES HL    +++N+ +       
Sbjct: 121 NILEGIRFYTSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEM 180

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
            +  KE Q    +M   A   E  +A      G  +GLN      Y+++IANRR   I +
Sbjct: 181 DIIAKEEQSWVMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICI 240

Query: 310 EPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347
           +P+F      NP PW    ++ K ++N   ET +  Y  G 
Sbjct: 241 KPMFDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVIGG 281


>gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
 gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
          Length = 318

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 114/314 (36%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    +T+ E  ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KMTEQEHYLVGHVFGGLTLLDTLQSQDGMASLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +          L    F E+VH+ ++  I  +L       E+F+       +  KAN   
Sbjct: 79  QATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDWTNSNEFLQYKANRIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           Q  Q  S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 QVYQNGSQLQRKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       E +     +L +    E  Y      + 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSTDEQNELKTWLYDLLLDLYGNEEKYTKLLYDE- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G    S   ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y+ G    ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313


>gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
 gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
          Length = 348

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 22/305 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y    +  W P E+P+ +D  +WKS   L++ ER           + ++L     + A+
Sbjct: 24  FYEKYTSQLWFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALDTLQGEVGMPAL 80

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWA 162
              +     +  +  Q   E +H+ ++  +  +     +E E+F   R  P +  K    
Sbjct: 81  RHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTSEEREVFEWVRTQPQLQNKIAMI 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +               D     L    V   + E   FY+GF   L L    +MV   E
Sbjct: 141 REIYDN----------PDVSNLGLWKKMVVSCMLETALFYSGFFYPLYLAGQGRMVSAGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I+ DE++H  +   +  +   E                L +    E+AY       
Sbjct: 191 IFNLIIMDEAVHGVYVALLAQEKFAEMNEAEQAYALAWYEETLMKLYRNELAYTEMLYAD 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
             +       ++++++  N     +G+E  F+  E NP   +   I  K    +FF  + 
Sbjct: 251 VGL---VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI--VRNGIKAKGTTHDFFSAKG 305

Query: 341 TEYQQ 345
             Y +
Sbjct: 306 NSYAK 310


>gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1]
 gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1]
          Length = 313

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 24/309 (7%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT+DE    K    F A+++ LV  N
Sbjct: 18  PDMRELRDLSIANNWNEFELCYARDEKD---VDCLTEDECDFYKFVFCFLAAADDLVNVN 74

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155
           +   +       + + Y   Q   E VHS T+  +      ++    + Y     +  +I
Sbjct: 75  L-DNLVTLFPQKDIQHYYAEQIRIETVHSRTYSAVQLVFFRNDAIARDRYVLEAVKDGAI 133

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +W  +               + D+  L + ++  ++ EG++F + FA I  L R +
Sbjct: 134 RRKIDWLSRIQN------------EGDELTLPEKYILMILIEGIFFVSSFAAISYLRRHS 181

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
                 +    I RDE++H      + N     +P    K   ++   +  EA  +E  +
Sbjct: 182 IFQVTCQSNDLISRDETIHTTASCCIYNNWLKGHP----KPSVKRIHQLFKEAVEIECDF 237

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                PK    ++  + + +++F ANR    IG+  ++        +   ++ L+K  NF
Sbjct: 238 LVARAPKAARLIDIDAIQSFVRFTANRWLSMIGVPTIYDDPAPDPTFPLALMSLEKNVNF 297

Query: 336 FETRVTEYQ 344
           FE R T Y 
Sbjct: 298 FEHRSTAYS 306


>gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
 gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
          Length = 389

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 124/326 (38%), Gaps = 36/326 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148

Query: 158 KANWALQYTQTLSSPSFT-------------------------TGTKDADQEFLQDLFVF 192
           +A    +Y   +   +                             TK A  + L      
Sbjct: 149 RAESIGRYYDDVLVKTREYQNAVEDYEGILSEGFRKEELGKVVECTKRALMKSLYLCLHV 208

Query: 193 YVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
               E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q+++    
Sbjct: 209 INALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDG 268

Query: 252 LW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQ 306
                  +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R  Q
Sbjct: 269 DEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQ 328

Query: 307 IGLE-PLFKY-TENPFPWMSEVIDLK 330
            GL  P+     ++P+PW+ E ++  
Sbjct: 329 CGLPCPITDAPVKHPYPWIREYLNSD 354


>gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           geothermalis DSM 11300]
 gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM
           11300]
          Length = 319

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 105/305 (34%), Gaps = 25/305 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y+      W   E+P+  D A W+    L+  ER    R      + ++L     +  +
Sbjct: 19  FYIQQQAQLWFSEEIPIASDAADWR---ALSPAERTCYTRVSAGLNAMDTLQGEVGMPLL 75

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                + + +  L   AF E VH+ ++     +     +E E F      P +  K    
Sbjct: 76  AAGEDDHQRKATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPHLQRK---- 131

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                       T   +  ++       +   + E   FY+GF   L L    KM  + E
Sbjct: 132 -----------ITVFRRLYEEGDALTRMLASCLLETALFYSGFFYPLYLAGQGKMSHMGE 180

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I  DE+LH ++   +  +     P       + +   +  E    E AY  E   +
Sbjct: 181 VFTLICADEALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVYAE 240

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV- 340
             +   A   + ++++  N  C  +GLE LF   E NP              +FF  +  
Sbjct: 241 VGL---ASEVKTFVRYNFNICCDNLGLERLFPEEEVNPLVLNGIRATGGTTHDFFSIKGA 297

Query: 341 TEYQQ 345
             Y +
Sbjct: 298 GGYAK 302


>gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 22/197 (11%)

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P    KA+WAL +                 +    +  V +   EG++F   FA I  L 
Sbjct: 10  PHRWKKADWALNWIGNQ-------------KASYGERVVAFAAVEGIFFSGSFAAIFWLK 56

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +   M G+    + I RDE LH +F   +         HL  K   Q    ++  A  +E
Sbjct: 57  KRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIE 109

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +  E +P   +G+N    ++Y++F+A+R   ++G   ++   ENPF +M E I L+ +
Sbjct: 110 QEFLTEALPVKLIGMNCQLMKRYIEFVADRLLLELGFAKIY-RAENPFDFM-ENISLEGK 167

Query: 333 KNFFETRVTEYQQGAEL 349
            NFFE RV EYQ+   +
Sbjct: 168 TNFFEKRVGEYQRMGVM 184


>gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans]
 gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans]
          Length = 668

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 25/230 (10%)

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFT 175
                E +HS  +  ++ +   D+ E    FN       I AKA+W L++    ++P   
Sbjct: 443 TIIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWISDHNAP--- 499

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                       +    +   EG++F + FA I  L +   + G+    + I     LH 
Sbjct: 500 ----------FSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHP 548

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           N      N  +        K  + +   +++E+ L+E  +  E++P   +G+N     +Y
Sbjct: 549 NCFFSTFNLQRR------RKPAESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKY 602

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           ++F+A+    ++G    +  T+NPF +M E I ++ + NFFE RV+EYQ+
Sbjct: 603 VEFVADLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650


>gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 335

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 117/331 (35%), Gaps = 30/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+      +N W+P ++P+ +DL  W+    L+DDER +  R     
Sbjct: 26  NWNRIEDAKDLEVWQ---RLTSNFWLPEKMPLSNDLPDWR---ALSDDERTLTARVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ A    ++          +      AF +AVH+ ++  + +++           
Sbjct: 80  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCS--------- 130

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                I     WA+   +     +        D    + +     +   +  Y GF   L
Sbjct: 131 --SAEIEDAYTWAIDNRRLQPRATAVMAHYAGDDPLKRKV--ASTLLSSLLLYAGFYLPL 186

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  M+  A+  + I+RD+++H  +      +    +P     E +  +     E  
Sbjct: 187 WYSSRGVMMNTADMIRLILRDKAVHGYYSGYKYQRGLDAHPERV-AEMEDFTYRFTAELL 245

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
            LE  Y+ +    G +       + ++ + A++    +G  P ++       P    +  
Sbjct: 246 ALENEYSRDLYSLGSLDYAG--VDAFVHYNADKALMNLGYGPQYEDAAAGVEPEIIAALT 303

Query: 327 IDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            D  +  +FF    + Y  G      E  WD
Sbjct: 304 PDSSETHDFFSGSGSSYVMGRAEVTEEDDWD 334


>gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum]
          Length = 230

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 19/205 (9%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            +  ++ + +L        L P++Y   W  Y  A  + W   EV +  D   W+S   L
Sbjct: 33  SKDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---L 89

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
              ER  I   L FFA+S+ +V  N++    + +  PE R +   Q   E +HS  +  +
Sbjct: 90  KVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLL 149

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E    FN    +  +  KA WAL +                 +    +  V
Sbjct: 150 IDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI-------------GDSKSTFAERLV 196

Query: 192 FYVVFEGMWFYTGFAQILSLGRANK 216
            +   EG++F   FA I  L   + 
Sbjct: 197 AFAAVEGVFFSGSFAAIFWLKSEDL 221


>gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 322

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 19/311 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H  +   +         E +H+ ++  I TSL   +   +           +  KAN 
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANL 133

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y   L  P   T         L    V  V  E   FY+GF   L L    K+    
Sbjct: 134 IESYYMKLFKPEVKT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +F      +I         ++ +++   +L +    E+ Y  +   
Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLLDLYENELKYTQDIYG 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339
           +  +       + Y+++ ANR    +G    F+  + NP   +   ++   K  +FF  +
Sbjct: 247 EIGLY---DEVKDYVEYNANRALANLGYPGYFEDKDINPI--IENAMNTSTKNHDFFSVK 301

Query: 340 VTEYQQGAELK 350
              Y     ++
Sbjct: 302 GDGYVVSMNVE 312


>gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 316

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 28/307 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK    L+D E+ ++K+ +G  A  ++L +   + AI 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEGLYAIK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163
           ++    +         F E++H+ T+  I+ SL    D   +++     P +  KA    
Sbjct: 77  KNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFKAQRVN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            Y Q  S                  + V  +  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 DYYQNGSPLQ---------------VMVASIFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E       +FQ+     L E    E AY  E     
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEEVYSDI 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
            +       + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 242 GLE---DDIKTFVKYNANKSLQNMGFGIYFENATANDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQG 346
              Y  G
Sbjct: 298 GAGYLMG 304


>gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus
           hirsutus]
          Length = 249

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 24/233 (10%)

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151
           +V +N+V    + +  PE R +   Q     +HS  +  +I SL  D  E    FN    
Sbjct: 1   IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           VP +  K +W L+                 D+       V +   EG++F  G A I  L
Sbjct: 61  VPCVKKKKDWVLRRIAD-------------DRVTFPLKVVAFATVEGIFFAGGAAAIFWL 107

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    + I + ESL+ +F   +  +       L  +   ++   ++ EA ++
Sbjct: 108 QEKGVMPGLTLSNELIRKGESLYTDFACLLFKR-------LVQRPSVEEITEIIREAVII 160

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           E  ++ + +P   +G++      Y++F+A+R    +    +F    NPF +M 
Sbjct: 161 EQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFGV-PNPFGFME 212


>gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 317

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 28/309 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK    L+  E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLEWK---KLSTMEKEIVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163
           +H    + R  L    F E++H+ T+  I+ SL    D  E+++     P +  KA    
Sbjct: 77  KHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFKAEKI- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                  +  +  GT    +       V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 136 -------NNIYQNGTPIQVK-------VASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E      + F Q   + L E    E A+  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEELYTEI 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETR 339
            +   A   + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 242 GL---AEDIKTFVKYNANKSLQNMGFGIYFENALAKDVNPIV-MNGISIETSNHDFFSQV 297

Query: 340 VTEYQQGAE 348
              Y  G  
Sbjct: 298 GAGYLMGNA 306


>gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Protein B2; AltName: Full=Ribonucleotide
           reductase
 gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4]
 gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T]
          Length = 388

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 130/350 (37%), Gaps = 36/350 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKN 72
              V+V ++ M            ++    +E+ +    +  W P EV +  D A +   N
Sbjct: 7   TNPVDVLNEPMFFGSGLGLARYDIQRHRVFEELIERQISFFWRPEEVNLMMDAAQF---N 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   ++ +   NL + +  +S+        +   +S+P    ++    F E +HS ++ 
Sbjct: 64  KLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT------------------------ 168
           +I+ +L  D  ++F+      +I  +A    +Y                           
Sbjct: 124 HIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKDMVEYYKDQGLI 183

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYI 227
           L+        K    + L          E + FY  FA   +  +    M G A+  ++I
Sbjct: 184 LADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 243

Query: 228 MRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            RDE LHL     +I Q++            +E +Q++  +  E    E  +A      G
Sbjct: 244 ARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDG 303

Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
            V  LN  S   ++ ++   R  Q GL  P+     ++P+PW+ E ++  
Sbjct: 304 DVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSD 353


>gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 211

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 28/220 (12%)

Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +L  D+ E    FN    +PSI  KA WA ++               A     
Sbjct: 1   MYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSF 46

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   I 
Sbjct: 47  DTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYIN 106

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            +               ++ EA  +E  +  E++P   +G+N     QY++F+A+R    
Sbjct: 107 NKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFA 157

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 158 LGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195


>gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
 gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
          Length = 392

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 124/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q+++ 
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268

Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     KE +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDEWVKIAKECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H]
          Length = 392

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 125/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQD----------------------------L 189
           +A    +Y   +   +       AD E+ ++                             
Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYKKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q+++ 
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268

Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     KE +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDEWVKIAKECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa]
          Length = 391

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEELIEKSLSFFWRPEEVNLMLDSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   LS+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMALLSDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF---------------------------LQDLF 190
           +A    +Y   +   +        + E                            L    
Sbjct: 149 RAESIGKYYDDVLVKTRHWENAKENYECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCL 208

Query: 191 VFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                 E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++   
Sbjct: 209 HVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGT 268

Query: 250 PHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304
                    KE +Q++  +  E    E  +A      G    +N  S   ++ ++   R 
Sbjct: 269 DGDEWVQIAKECEQEAVDIFMEVNSQEKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRM 328

Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330
            Q GL  P+    T++P+PW+ E ++  
Sbjct: 329 KQCGLPCPITDAPTKHPYPWIREYLNSD 356


>gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           radiodurans R1]
 gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus
           radiodurans R1]
          Length = 354

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 106/305 (34%), Gaps = 22/305 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y    +  W P E+P+ +D   WK+   L+D+ER           + ++L     +  +
Sbjct: 43  FYAKYTSQLWFPEEIPLTNDALAWKT---LSDEERWTYIHASAGLNALDTLQGEVGMPRL 99

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
              +     +  L  Q   E +H+ ++  +  +     +E E+F   R  P +  K    
Sbjct: 100 RDLVDGHIRKATLQFQGMMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHKIAVI 159

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
               +            D     +    V   + E   FY+GF   L L    +MV   E
Sbjct: 160 QGVYRD----------PDVSDLGVWKKLVVSCMLETALFYSGFFYPLYLAGQGQMVSAGE 209

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I+ DE+LH  +   +  +           + Q      L      E+AY  +    
Sbjct: 210 IFNLIILDEALHGVYVALLAQEKFATMNAAEQADAQAWFDDTLQALYSNELAYTEQLYAN 269

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
             +       +++++F  N     + L   F   + NP   +   I  +    +FF  + 
Sbjct: 270 VGL---TGEVKKFIRFNFNVLADNLALPRPFGDEDINPI--VQNGIQARGTTHDFFSAKG 324

Query: 341 TEYQQ 345
           + Y +
Sbjct: 325 SSYSK 329


>gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus CNRZ32]
 gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 340

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage K]
 gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K]
 gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage 812]
 gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W]
          Length = 349

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 18/311 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W P E  +  DL+ W   N LT+ E+   K+ L      ++      +  +
Sbjct: 32  YWEQGISQFWTPEEFDVSRDLSSW---NSLTESEKNTYKKVLAGLTGLDTKQGGEGMNLV 88

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H   P+ +         E +H+ ++ +I T+L  ++   +       E   +  KA +
Sbjct: 89  SYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQF 148

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y   L  P+ T   +           V     E   FY+GF   L L    +M    
Sbjct: 149 IGYYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSG 201

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
                I +DE+ H +                  K+  +++  +L      E+AY H    
Sbjct: 202 AIIYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYD 261

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
              +         Y+Q+  NR    +G E  F     NP       +D  +  +FF  + 
Sbjct: 262 PLELS---EDVINYVQYNFNRALQNLGREDYFNPEPYNPIVENQTNVDRLRNVDFFSGK- 317

Query: 341 TEYQQGAELKW 351
            +Y++   +K 
Sbjct: 318 ADYEKSTNIKD 328


>gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus MTCC 5463]
          Length = 335

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus DPC 4571]
 gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 340

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
 gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
          Length = 335

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
 gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
          Length = 335

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 334


>gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 335

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 340

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 337

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
          Length = 335

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDTPFTAEETYISPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 319

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 117/320 (36%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +         W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLVEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVAV-KTFWGDLYDVFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    +     +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNTILKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  +A    +   DE +H N GI ++  I  ENP   TK  ++++   + E  
Sbjct: 170 FTRFKGYMKNVANIIAWTSVDEQVHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYI 228

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
           LLE         +G +   +      YM++  +    Q+ L   F  T     P  W  E
Sbjct: 229 LLEDKMLDWIFEEGELEFFSKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            + + +  +FF  R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308


>gi|195977665|ref|YP_002122909.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974370|gb|ACG61896.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 337

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 319

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    E   +   + W+ +EV    D+  +KS   LT  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--ELTPVEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    ++N   +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPVFKERSNVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    +  +A    +   DE LH N GI ++ +I  ENP +  K  ++ + T +    
Sbjct: 170 FTRFKGFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYI 228

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
            LE         +G +   +      YM++  +    Q+GL   F  +     P  W  E
Sbjct: 229 TLEDKMLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   +  +FF  R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308


>gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 352

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 36  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 93  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 197

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 258 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 314

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 315 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 351


>gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CP220]
          Length = 369

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 131/308 (42%), Gaps = 16/308 (5%)

Query: 37  LKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           +KY   +E          W   EV    D A +   N L +  +    R L      +S+
Sbjct: 31  IKYP-IFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSI 86

Query: 96  VANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
               ++  I   ++NPE    +   Q FE + HS ++ +I+ S+  +  ++F+   E+P 
Sbjct: 87  QGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPE 146

Query: 155 ITAKANWALQ-YTQTLSSPS-FTTGTKDADQEFLQ--DLFVFYVVFEGMWFYTGFAQILS 210
           +   A+   + Y +   + + +  G  D ++  ++  ++ V   + EG+ FY+GFA I S
Sbjct: 147 LLELADSISKPYEEAFEAVTKYHLGLIDTEEVKVKVLNMLVEINILEGVRFYSGFATIWS 206

Query: 211 LG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLH 266
           +      M    +  Q I RDE+LHL    ++I  +       +       +        
Sbjct: 207 MHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSRSPEEGFINAWNSIKDNITDRYL 266

Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMS 324
           EA   E  +      KG F+G+     + Y++++ N+R   IG + +F    +NP PW+ 
Sbjct: 267 EAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVE 326

Query: 325 EVIDLKKE 332
             I+  K 
Sbjct: 327 TYINYDKN 334


>gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
 gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32]
 gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
          Length = 392

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189
           +A    +Y   +   +                                 K A  + L   
Sbjct: 149 RAESIGRYYDDVLVKTREWENAKEFVELAKESPDADFRLNRAIKQEAEAKCALMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268

Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|225869986|ref|YP_002745933.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. equi 4047]
 gi|225699390|emb|CAW92836.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. equi 4047]
          Length = 337

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 111/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I RN    
Sbjct: 28  NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQTEMKTFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 247 LIDLEKAYLKELYDG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula]
          Length = 206

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 7   LSPIQAGEK---RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +  ++ G     R    ++ +L  ++    + P++Y   WE Y  A  + W   EV +  
Sbjct: 1   MGSLENGTPKKIREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSY 60

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+  W +   L+D E+  I   L FFA+S+ +V  N+       +  PE R +   Q   
Sbjct: 61  DVQHWAT---LSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAI 117

Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E    FN    +P +  KA WAL +  +            
Sbjct: 118 ENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINS------------ 165

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
                  +  V +   EG++F         L   
Sbjct: 166 --STSFAERLVGFACVEGIFFSEASVPYFGLKER 197


>gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus H10]
          Length = 340

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFN 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE                +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 325

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q+ P +Y    E   +  +++W+ TE     D+  +K+   ++D ER  + R++   +
Sbjct: 9   RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +    E        A  E  H   + +++  LG++  ELF    
Sbjct: 67  QIEVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMN--ELFTQIT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++ A+  +           +F       +QE +  L +F +  E +  +  F  ++S
Sbjct: 124 HIPALMARIEYM---------EAFMRNKDKNNQELVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI + + IK E+P L+T  F    +T+  +A 
Sbjct: 175 FNKYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQAL 234

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E    +     G +      + E Y+    N     +G+E  +   E       W   
Sbjct: 235 AAERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSGKENDFFYKRSTDYSK 314


>gi|255325476|ref|ZP_05366578.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297414|gb|EET76729.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 362

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +N+  L+ I         D    + A  + N++   K    W        N W+P +VP+
Sbjct: 26  SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTANFWLPEKVPL 81

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +DL  W+    +T +ER +  R      + +++ A    +   +              A
Sbjct: 82  SNDLPAWQ---KMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 138

Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           F ++VH+ ++  + ++L    +  E +        + A+A   L +              
Sbjct: 139 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 188

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D  +  +    +  ++      Y GF   L       +   A+  + I+RD+++H  +  
Sbjct: 189 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 243

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
               +       L  KE    + ++L E   LE+ Y+ E      +         ++++ 
Sbjct: 244 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 300

Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351
           AN+    +G    F   E   NP    +      +  +FF    + Y  G     ++  W
Sbjct: 301 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 360

Query: 352 D 352
           D
Sbjct: 361 D 361


>gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CPt10]
          Length = 369

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 16/308 (5%)

Query: 37  LKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           +KY   +E          W   EV    D A +   N L +  +    R L      +S+
Sbjct: 31  IKYP-IFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSI 86

Query: 96  VANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
               ++  I   ++NPE    +   Q FE + HS ++ +I+ S+  +  ++F+   E+P 
Sbjct: 87  QGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPV 146

Query: 155 ITAKANWA----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   A+       +  + ++         +  +  + ++ +   + EG+ FY+GFA I S
Sbjct: 147 LLELADSISKPYEEAFEAVTKYHLGLIDIEDVKVKVLNMLIEINILEGVRFYSGFATIWS 206

Query: 211 LG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLH 266
           +      M    +  Q I RDE+LHL    ++I  +       +       +        
Sbjct: 207 MHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSRSPEEGFINAWNSIKDNITDRYL 266

Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMS 324
           EA   E  +      KG F+G+     + Y++++ N+R   IG + +F    +NP PW+ 
Sbjct: 267 EAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVE 326

Query: 325 EVIDLKKE 332
             I+  K 
Sbjct: 327 TYINYDKN 334


>gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           AR1]
          Length = 392

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268

Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           urealyticum DSM 7109]
 gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 334

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 32/323 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W   L    N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 26  NWNRVQDEKDLEVW---LRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +              AF +AVH+ ++  + ++L       + ++
Sbjct: 80  TLLDTMQATVGEISQIQDALTEHEEAVYTNIAFMQAVHARSYSSVFSTLSSTPAINDAYD 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  +    L +                  E      V   +   +  Y GF  
Sbjct: 140 WAVKNEVLQTRCRKVLVHY---------------FGEDPLKRKVSATLLSSVLLYAGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +    +P     E    +  +L E
Sbjct: 185 PLHFSTRGVLSNTADMIRLILRDKAVHGYYSGYKFQRGIERHPE-RAAELSDFTHELLEE 243

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
              LE+ Y+ E   P G         E+++++ AN+    +G  P++  +E   +P    
Sbjct: 244 LYQLELEYSTELYEPFGL----MADVERFVKYNANKALMNLGYTPIYPGSETSVSPEILS 299

Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
           +      +  +FF    + Y  G
Sbjct: 300 ALTPGADENHDFFSGSGSSYIIG 322


>gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
 gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 339

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 115/326 (35%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL+ W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  +A   + Y          TGT     +    L        G   Y GF  
Sbjct: 144 WVVKTETLQKRAKALIPYY---------TGTDPLKSKVAAALMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   + P     E ++    +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E      +        ++  + A +    +G +  F   E    P  +  
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
                 +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27]
          Length = 392

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268

Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 337

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 110/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMSNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQAEMKTFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 247 LIDLEKAYLKELYDG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
          Length = 311

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 2   NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 55

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 56  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 115

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 116 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 160

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 161 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 220

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 221 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 277

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 278 LSARADENHDFFSGNGSSYVMG 299


>gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 316

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 134/338 (39%), Gaps = 34/338 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           MLN   +   +      + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K
Sbjct: 1   MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141
           + +G  A  ++L +   + A+ ++    + R  L    F E++H+ T+  I+ SL    D
Sbjct: 55  KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E++N       +  KA           +  +  GT          + V  V  EG+ +
Sbjct: 115 IEEIYNWMNNDRRMQFKARKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+ F   L     NK+  +AE  + ++RDES+H  +      Q   E      + F    
Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELAITEQENFTNWM 219

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317
            + L E    E AY  E   +  +       + ++++ AN+    +G +  FK       
Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352
           NP   M+ +       +FF      Y  G     L  D
Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313


>gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
 gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
          Length = 324

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 123/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +    +W+ TEV    D   +     L+  E+  +K +L   A
Sbjct: 7   RVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFH--AHLSLAEKTAVKNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V  +    IY H   PE        A  E  HS  +  ++  LG ++   F    
Sbjct: 65  QIEVAV-KSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +VP I  + ++         S          +++++  L +F ++ E +  ++ FA +LS
Sbjct: 122 DVPVIRRRVDYL--------SNVLKDTKSQDNRKYMVSLILFSILIENVSLFSQFAILLS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P  + +E     R  + ++ 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSI 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
            +E         +G +  +       +M+F  +    QI +  +F      +    W  E
Sbjct: 234 AVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  EY +
Sbjct: 294 EVFANSLDDFFAKRPVEYTK 313


>gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 337

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
 gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
          Length = 392

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 124/329 (37%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268

Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
                     +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R
Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328

Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
             Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357


>gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3]
 gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3]
 gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3]
 gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
          Length = 306

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 123/309 (39%), Gaps = 29/309 (9%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    + +N W+ ++  ++DD   ++  + LT+DE +  +    F ++++ LV  N
Sbjct: 16  PDINNLRALSISNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVN 72

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155
           +  ++ +  S  +   Y + Q   E VH+  +  I   L   +     +  N+    PSI
Sbjct: 73  L-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSI 131

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W  +              K  D   + + ++  ++ EG++F + FA I  L    
Sbjct: 132 QQKVQWLEE--------------KVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNG 177

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H +    + N    E P +       +   +  EA  +E A+
Sbjct: 178 LFVVTCQFNDLISRDEAIHTSASCCIYNNYVPEKPAIT------RIHQLFSEAVEIECAF 231

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                PK  + +N  +  QY++F A+R    I +  LF        +    +   K  NF
Sbjct: 232 LKSHAPKTRL-VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFMIADKNTNF 290

Query: 336 FETRVTEYQ 344
           FE   T Y 
Sbjct: 291 FERHSTSYA 299


>gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 319

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 116/320 (36%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +         W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLIEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVAV-KTFWGDLYDIFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    +     +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNGVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  +A    +   DE +H N GI ++  I  ENP   TK  ++++   + E  
Sbjct: 170 FTRFKGYMKNVANIIAWTSIDEQVHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYI 228

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
           LLE         +G +          YM++  +    Q+ L   F  T     P  W  E
Sbjct: 229 LLEDKMLDWIFEEGELDFFTKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            + + +  +FF  R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308


>gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS]
 gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
 gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
          Length = 337

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5]
          Length = 391

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQE---------------------------FLQDLF 190
           +A    +Y   +   +        + E                            L    
Sbjct: 149 RAESIGRYYDDVLVKTREWENAKENYESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCL 208

Query: 191 VFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                 E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q++   
Sbjct: 209 HVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGT 268

Query: 250 PHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304
                    +E +Q++  +  E    E  +A      G V  LN  S   ++ ++   R 
Sbjct: 269 DGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRM 328

Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330
            Q GL  P+     ++P+PW+ E ++  
Sbjct: 329 KQCGLPCPITDAPVKHPYPWIREYLNSD 356


>gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 339

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 115/326 (35%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL+ W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  +A   + Y          TGT     +    L        G   Y GF  
Sbjct: 144 WVVKTETLQKRAKALIPYY---------TGTDPLKSKVAAALMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   + P     E ++    +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E      +        ++  + A +    +G +  F   E    P  +  
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
                 +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS315]
 gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1]
 gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
          Length = 337

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|304373441|ref|YP_003856650.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           hyorhinis HUB-1]
 gi|304309632|gb|ADM22112.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           hyorhinis HUB-1]
 gi|330723642|gb|AEC46012.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyorhinis MCLD]
          Length = 344

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W + +    N W+P ++P+ +DL  W++   L+   + +I R     
Sbjct: 35  NWNVINDNKDLEVWNRVVQ---NFWLPEKIPVSNDLETWRT---LSPTWKRVITRTFTGL 88

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   +      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 89  TLLDTIQATIGDVAQIPYSQTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+ A+A   + Y          TG      +    +        G   Y GF  
Sbjct: 149 WVINTKSLQARAQALIPYY---------TGKDPLKSKVAAAMMP------GFLLYGGFYL 193

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   + P    +E ++    +L+E
Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLPLKKQEEMKKFVFDLLYE 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y +E   +  +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 254 LIDLEKTYLNELYSEVGL---AEEAIKFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFNQ 310

Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 311 LSARADENHDFFSGNGSSYVMGVSEETEDEDWD 343


>gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 277

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 25/265 (9%)

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
              ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   
Sbjct: 6   LETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEM 65

Query: 173 S-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
           +        GT   +           ++ L    +     E + FY  FA   +      
Sbjct: 66  TSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAEREL 125

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E
Sbjct: 126 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 185

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +    
Sbjct: 186 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDN 245

Query: 332 EKNF-FETRVTEY---QQGAELKWD 352
            +    E  V+ Y   Q  +E+  D
Sbjct: 246 VQVAPQEVEVSSYLVGQIDSEVDTD 270


>gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
          Length = 337

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G E  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|227833718|ref|YP_002835425.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454734|gb|ACP33487.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 341

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +N+  L+ I         D    + A  + N++   K    W        N W+P +VP+
Sbjct: 5   SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTANFWLPEKVPL 60

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +DL  W+    +T +ER +  R      + +++ A    +   +              A
Sbjct: 61  SNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 117

Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           F ++VH+ ++  + ++L    +  E +        + A+A   L +              
Sbjct: 118 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 167

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D  +  +    +  ++      Y GF   L       +   A+  + I+RD+++H  +  
Sbjct: 168 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 222

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
               +       L  KE    + ++L E   LE+ Y+ E      +         ++++ 
Sbjct: 223 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 279

Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351
           AN+    +G    F   E   NP    +      +  +FF    + Y  G     ++  W
Sbjct: 280 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 339

Query: 352 D 352
           D
Sbjct: 340 D 340


>gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
 gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
          Length = 316

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 34/338 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           MLN   +   +      + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K
Sbjct: 1   MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141
           + +G  A  ++L +   + A+ ++    + R  L    F E++H+ T+  I+ SL    D
Sbjct: 55  KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E++        +  KA           +  +  GT          + V  V  EG+ +
Sbjct: 115 IEEIYTWMNNDRRMQFKAKKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+ F   L     NK+  +AE  + ++RDES+H  +      Q   E      + F    
Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELSITEQENFTNWM 219

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317
            + L E    E AY  E   +  +       + ++++ AN+    +G +  FK       
Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352
           NP   M+ +       +FF      Y  G     L  D
Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313


>gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 337

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|38234491|ref|NP_940258.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200754|emb|CAE50457.1| ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           diphtheriae]
          Length = 341

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 121/338 (35%), Gaps = 37/338 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+    K    W+       N W+P +VP+ +DL  W++   +T   R ++ R     
Sbjct: 25  NWNRTQDAKDNEVWQ---RLTANFWLPEKVPLSNDLPTWRT---MTPVYRELVTRTFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L A+   ++          +      AF +AVH+ ++  + +++    +  + + 
Sbjct: 79  TLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSTEIDDAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  +A   +++                         V   +   +  Y GF  
Sbjct: 139 WAISNPLLQRRATRVIEHY---------------YGSDPLKRKVASTLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    K++  A+  + I+RD+++H  +      +     P     E  + + ++  E
Sbjct: 184 PLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERAN-EMAEFTYSLCDE 242

Query: 268 ATLLEIAYAHETM-----PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
              +E AY  +            GL       ++ + A++    +G EP ++      +P
Sbjct: 243 LLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHVSP 302

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
               +   +  +  +FF    + Y  G      E  WD
Sbjct: 303 EIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWD 340


>gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae]
          Length = 321

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 128/334 (38%), Gaps = 26/334 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
             M     + N+L     G+    +       W+  E+P+ DD  +W   N L  DER +
Sbjct: 1   MNMNREAINWNRLNN---GYTKMFWDQNIRQFWVDEEIPISDDKLVW---NSLDIDERDV 54

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            ++ LG     ++   +  +  I   + N   +  L      E +H+ ++  I +SL   
Sbjct: 55  YEKVLGGLTLLDTEQGSVGMPRIALAIDNLAYKPVLGFMGAMEHMHAKSYSSIFSSLSNI 114

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           E    +F+  +   +   K +  L     +            D+  L       V  E  
Sbjct: 115 ERIDYIFDWVKTYRNFQDKLDLILGKYNNIH-----------DRMSLYKALCTSVFLETF 163

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   L L    KM+   E    I+RDES+H  F   +  +   +      +   +
Sbjct: 164 LFYSGFFYPLYLAGQGKMINSGEIINLILRDESVHGVFVGLLAQEEFNKMTSREQEFAYK 223

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
           ++  +L     LE AY  +      +     + + ++++ A++    +G EP F   +  
Sbjct: 224 EAMFILDRLYDLEKAYTKDLYSSIGLE---SAVDVFVRYNADKALMNLGFEPTFNIQDID 280

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NP   ++ +    K  +FF T+   Y +  +++
Sbjct: 281 VNPLV-LNGLRTDTKTHDFFSTKGNGYIKPMKIE 313


>gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
          Length = 316

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 34/338 (10%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           MLN   +   +      + W+K   A    W+ T VP+ +DL  W+    L+D E+ ++K
Sbjct: 1   MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141
           + +G  A  ++L +   + A+ ++    + R  L    F E++H+ T+  I+ SL    D
Sbjct: 55  KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E++        +  KA           +  +  GT          + V  V  EG+ +
Sbjct: 115 IEEIYTWMNNDRRMQFKAKKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+ F   L     NK+  +AE  + ++RDES+H  +      Q   E      + +    
Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELSITEQENYTNWM 219

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317
            + L E    E AY  E   +  +       + ++++ AN+    +G +  FK       
Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352
           NP   M+ +       +FF      Y  G     L  D
Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313


>gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii]
          Length = 321

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 126/330 (38%), Gaps = 26/330 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               + N+L        W+         W+  E+P+ DD  +W + +G   +ER + ++ 
Sbjct: 5   REAINWNRLNNSYTKMFWD---QNIRQFWVDEEIPISDDKLVWNTLDG---EERDVYEKV 58

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
           LG     ++   +  +  I   + N + +  L      E +H+ ++  I +SL       
Sbjct: 59  LGGLTLLDTEQGSVGMPRIALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F   +   +   K +  L    ++            D+  L       V  E   FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSIH-----------DRMSLYKALCTSVFLETFLFYS 167

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L L    KMV   E    I+RDES+H  F   +  +   +         Q+++  
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
           +L     LE AY  +      +     + + ++++ A++    +G +  F   +   NP 
Sbjct: 228 ILERLYYLESAYTKDLYSSIGLE---GAVDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++ +    K  +FF T+   Y +  +++
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIKPMKVE 313


>gi|294155961|ref|YP_003560345.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           crocodyli MP145]
 gi|291600208|gb|ADE19704.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           crocodyli MP145]
          Length = 340

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 109/331 (32%), Gaps = 26/331 (7%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++   N +        +      E +     N W+P ++P+ +D+  W++   L+D+ + 
Sbjct: 19  ERNGFNGKMRAVNWNIINDDKDLEVWNRVTQNFWLPEKIPVSNDIPSWRT---LSDEWQT 75

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I R        +++ A    +A   +      +      AF  AVH+ ++  I ++L  
Sbjct: 76  LITRTFTGLTMLDTIQATVCDIAQIPNALTDHEQVIYANFAFMVAVHARSYGTIFSTLCS 135

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            +   E          +  +A   + Y                  E      V   +  G
Sbjct: 136 SDQIEEAHEWVIANEELQERARILIPYYH---------------CEDPLKSKVAAALMPG 180

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
              Y GF     L   +K+   ++  + I+RD+ +H  +      +   +       E +
Sbjct: 181 FLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSDKRKAELK 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317
           +    +L+     E  +  +          A    ++  + A +    +G +  F   E 
Sbjct: 241 EFVFELLYRLIDAEKKFLTKLYEG---FDLAEDAIRFSVYNAGKFLQNLGYDSPFTDEET 297

Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              P  +        +  +FF    + Y  G
Sbjct: 298 RIEPEIFAQLSARADENHDFFSGNGSSYVMG 328


>gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo
           sapiens]
          Length = 172

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + 
Sbjct: 1   EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 60

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
                   HL  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R
Sbjct: 61  K-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 113

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 114 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 159


>gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
 gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
          Length = 319

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    + N   +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNNILKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    +  +A    +   DE LH N GI ++ +I  E P + T   + ++   +    
Sbjct: 170 FTRFKGYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYI 228

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
           LLE         +G +   +      YM++  +    Q+GL+  F  +     P  W  E
Sbjct: 229 LLEDKMLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   +  +FF  R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308


>gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 136

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/136 (64%), Positives = 108/136 (79%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA
Sbjct: 1   MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            +TMP+G +G+NA   E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFF
Sbjct: 61  RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120

Query: 337 ETRVTEYQQGAELKWD 352
           ETRV EYQ G  L WD
Sbjct: 121 ETRVIEYQTGGALSWD 136


>gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9]
 gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus
           9]
          Length = 311

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    + +N W+ T+  ++DD   ++    LT++E    K    F ++++ LV  N
Sbjct: 18  PDINELRSLSISNRWLETDFTLEDD---YQYIKCLTEEELSFYKFIFTFLSAADDLVNVN 74

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           I  ++       +   Y L Q   E VHS  +  I   L L EG++F   R   +    A
Sbjct: 75  I-GSLITLFKQKDIHHYYLEQECIEVVHSRIYSQI--QLMLFEGDIFERLRYTEATIQDA 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                    + +              + + ++  ++ EG++F + FA I         V 
Sbjct: 132 --------YIKAKVDWLEYNVQMNPLIGEKYILMIIIEGIFFTSSFAAISYFRNNGLFVV 183

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + +    I RDE++H +    + N           K    +   +  EA  +E  +    
Sbjct: 184 MCQLNDLISRDEAVHTSASCCIYNNYISYK----EKPAIPRIHQLFMEAVNIECNFISAY 239

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            PK    +N  +  QY+++ A+R    I +  LF        +    +  +K  NFFE  
Sbjct: 240 APKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMTAEKHTNFFERH 299

Query: 340 VTEYQ 344
            T Y 
Sbjct: 300 STAYT 304


>gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH]
          Length = 321

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 123/325 (37%), Gaps = 26/325 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               + N+L        W+         W+  E+P+ DD  +W + +G   +ER + ++ 
Sbjct: 5   REAINWNRLNNSYTKMFWD---QNIRQFWVDEEIPISDDKLVWNTLDG---EERDVYEKV 58

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
           LG     ++   +  +  +   + N + +  L      E +H+ ++  I +SL       
Sbjct: 59  LGGLTLLDTEQGSVGMPRLALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F   +   +   K +  L    ++            D+  L       V  E   FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSIH-----------DRMSLYKALCTSVFLETFLFYS 167

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L L    KMV   E    I+RDES+H  F   +  +   +         Q+++  
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
           +L     LE AY  +      +     + + ++++ A++    +G +  F   +   NP 
Sbjct: 228 ILERLYYLESAYTKDLYSSIGLE---GAVDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
             ++ +    K  +FF T+   Y +
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIK 308


>gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
          Length = 340

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 18/307 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +       W   E     DL++WK+   L+ DE+    + L      ++      +
Sbjct: 19  ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +  H      R      +  E +H  ++ +I TSL   +   + +   VP+      +
Sbjct: 76  PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA----NKY 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             + T+ +++  +     +     +       +  E   F++GF   L L    KMV   
Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +        I  +      ++ +++   +  +    E+ YA     
Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFDKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL----KKEKNFFE 337
           K  +        +Y+Q+  NR    +G E +F    NP P+   V +         +FF 
Sbjct: 252 KLGL---TEDVIRYIQYNGNRALMNLGWETVF----NPEPFNPIVENGLRTDTTNHDFFS 304

Query: 338 TRVTEYQ 344
            +   Y 
Sbjct: 305 VKGDGYT 311


>gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
 gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
          Length = 324

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 119/321 (37%), Gaps = 19/321 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
             + L P +Y        +  +++W+ TE  + +D+  ++   G+ + ER ++ R L   
Sbjct: 5   RRSTLRPAEYPEFLAYRDAIRHSYWLHTEYNLTEDVNDYR--VGVREAERQVLTRALLAI 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A  E  V       +YR    PE        A  E  H   + +++  LGL +   F   
Sbjct: 63  AQVEVAV-KTFWGDLYRKFPKPEVGAVGYTFAESEVRHQDAYAHLLELLGLTDA--FARL 119

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E P++  +              +     +   ++    + +F    E +  +  F  + 
Sbjct: 120 HEAPALGER---------LAVLDAHLVPVRQDGRDDAFSVALFSAFVEHVSLFGQFLILK 170

Query: 210 SLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           +  +   +  G+A   +   ++E +H  FG  ++  ++ E P  +   F  + R    +A
Sbjct: 171 AFNQATGRFKGVANIVEATSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLRAACVDA 230

Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              E A        G +        E +MQ   N     +G  PL++       P  W  
Sbjct: 231 ERAERAILRWICEAGALPFLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLAPTRWFE 290

Query: 325 EVIDLKKEKNFFETRVTEYQQ 345
           E +   K+ +FF  R T Y +
Sbjct: 291 EELLSSKQVDFFHKRPTAYAK 311


>gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 340

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 18/307 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +       W   E     DL++WK+   L+ DE+    + L      ++      +
Sbjct: 19  ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +  H      R      +  E +H  ++ +I TSL   +   + +   VP+      +
Sbjct: 76  PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA----NKY 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             + T+ +++  +     +     +       +  E   F++GF   L L    KMV   
Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +        I  +      ++ +++   +  +    E+ YA     
Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFEKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL----KKEKNFFE 337
           K  +        +Y+Q+  NR    +G E +F    NP P+   V +         +FF 
Sbjct: 252 KLGL---TEDVIRYIQYNGNRALMNLGWETVF----NPEPFNPIVENGLRTDTTNHDFFS 304

Query: 338 TRVTEYQ 344
            +   Y 
Sbjct: 305 VKGDGYT 311


>gi|83319806|ref|YP_424093.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283692|gb|ABC01624.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 339

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 113/326 (34%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+  +A   + Y           GT     +    L        G   Y GF  
Sbjct: 144 WVVKTESLQKRAKALIPYYA---------GTDPLKSKVAAALMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +       E ++    +L+E
Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E      +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 249 LIDLETAYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
                 +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
 gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
          Length = 252

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W  Y  A  + W   EV +  DL  W   N L D+ER 
Sbjct: 89  EEPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N++      + +PE + +   Q   E +HS  +  +I +   
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVK 206

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQT 168
           D  E    FN    +P IT KA WA+++ Q 
Sbjct: 207 DPQEADFLFNAIENIPCITKKAEWAIKWIQD 237


>gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 316

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 117/309 (37%), Gaps = 28/309 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +D   W++   LTD E+ +I + +G  A  ++L +   V  + 
Sbjct: 20  WDKATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEGVNVMR 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWAL 163
                 +    +      E++H+ ++  I+++L       + F+     P +  K     
Sbjct: 77  EDARTRKEVGVINDFLMMESIHAKSYGTILSTLNDQKTIDDTFHWMNNDPRMQYKVRRIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  ++                +  V  V  EG+ +Y+ F   L     NK+  ++E 
Sbjct: 137 EIYQNGNN---------------LEKKVASVFLEGILYYSNFFTPLWYRGNNKLANLSEV 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E        F+     +L +    E A+        
Sbjct: 182 IKLVIRDESVHGTYLGYKFQQAFAELTPDEQTRFRAWMDDLLADLLENEFAFTEVVYAPI 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
            +       +Q++++ AN+  + +G   +F +      NP   M+ +       +FF   
Sbjct: 242 QM---VEDVKQFVRYNANKAMNNMGFAAIFNHAAIEDINPIV-MNGISTETANHDFFSQV 297

Query: 340 VTEYQQGAE 348
              Y  G  
Sbjct: 298 GAGYLMGNA 306


>gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners AB-1]
 gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 337

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +DL  W   N L+ D + +I R     
Sbjct: 28  NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A+   +A  ++      +      AF  AVH+ ++  I ++L   +   E  N
Sbjct: 82  TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVINNEALQARAKALIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   NK+   A+  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 187 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E +  P +   
Sbjct: 247 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|311741268|ref|ZP_07715092.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303438|gb|EFQ79517.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 341

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +N+  L+ I         D    + A  + N++   K    W        N W+P +VP+
Sbjct: 5   SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTTNFWLPEKVPL 60

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +DL  W+    +T +ER +  R      + +++ A    +   +              A
Sbjct: 61  SNDLPAWQ---KMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 117

Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           F ++VH+ ++  + ++L    +  E +        + A+A   L +              
Sbjct: 118 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 167

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D  +  +    +  ++      Y GF   L       +   A+  + I+RD+++H  +  
Sbjct: 168 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 222

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
               +       L  KE    + ++L E   LE+ Y+ E      +         ++++ 
Sbjct: 223 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 279

Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351
           AN+    +G    F   E   NP    +      +  +FF    + Y  G     ++  W
Sbjct: 280 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 339

Query: 352 D 352
           D
Sbjct: 340 D 340


>gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
          Length = 310

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 116/308 (37%), Gaps = 25/308 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT +E    K    F A+++ L+  +
Sbjct: 16  DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKFVFAFLAAADDLINLD 72

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155
           I   +     + + + Y   Q   E VHS T+  +   L   +    + Y       P+I
Sbjct: 73  I-GNLMTLFPHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +W                 +      L + ++  ++ EG++F   FA I  L R N
Sbjct: 132 KKKIDWL-------------NRVQVETDLTLPEKYILMILLEGIFFVASFAAIAFLRRRN 178

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V + +    I RDE++H      + N    ++     K   ++   +  EA  +E  +
Sbjct: 179 IFVVMCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNF 234

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    ++  + + ++++  +R    IG+  +F        +   ++ + K  NF
Sbjct: 235 LASRAPQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDPSFPLTLMSIDKNVNF 294

Query: 336 FETRVTEY 343
           FE R T Y
Sbjct: 295 FEHRSTAY 302


>gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
          Length = 337

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  ++   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRSRVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS8232]
          Length = 337

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  ++   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRSRVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 337

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y          TG      +    +        G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           + +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAKMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 339

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +DL  W   N L+ D + +I R     
Sbjct: 30  NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A+   +A  ++      +      AF  AVH+ ++  I ++L   +   E  N
Sbjct: 84  TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y          TG      +    +        G   Y GF  
Sbjct: 144 WVINNEALQARAKALIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   NK+   A+  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 189 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E +  P +   
Sbjct: 249 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327


>gi|313665031|ref|YP_004046902.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           leachii PG50]
 gi|312949985|gb|ADR24581.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           leachii PG50]
          Length = 339

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+  +A   + Y           GT     +    L        G   Y GF  
Sbjct: 144 WVVKTESLQKRAKALIPYYA---------GTDPLKSKVAAALMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +       E ++    +L+E
Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y  E      +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 249 LIDLETDYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
                 +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|13508061|ref|NP_110010.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           pneumoniae M129]
 gi|2500211|sp|P75461|RIR2_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1674208|gb|AAB96162.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           pneumoniae M129]
 gi|301633274|gb|ADK86828.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           pneumoniae FH]
          Length = 339

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 122/357 (34%), Gaps = 39/357 (10%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            +SP++  +K+   + + +     + N +   K    W        N W+P ++P+ +D+
Sbjct: 11  SVSPLEYAQKKFQGNLRSV-----NWNLVDDEKDLEVWN---RITQNFWLPEKIPVSNDI 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             WK    L+ + + +I +        +++ A    +    +      +      AF   
Sbjct: 63  PSWKQ---LSKEWQDLITKTFTGLTLLDTIQATIGDIKQIDYALTDHEQVIYANFAFMVG 119

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           VH+ ++  I ++L   E   E      +  S+  +A   + Y          TG      
Sbjct: 120 VHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKALIPYY---------TGKDPLKS 170

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L        G   Y GF     L    ++   ++  + I+RD+ +H  +      
Sbjct: 171 KVAAALMP------GFLLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKFQ 224

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +   +       E ++    +++E   LE AY  E      +        ++  + A + 
Sbjct: 225 RKVEKMSKEKQAEMKRFVFDLMYELIELEKAYLKELYEGFGI---VEDAIKFSIYNAGKF 281

Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
              +G +  F   E    P  +        +  +FF    + Y  G      +  WD
Sbjct: 282 LQNLGYDSPFTEEETRIKPEIFAQLSARADENHDFFSGNGSSYVMGISEETEDKDWD 338


>gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316]
          Length = 336

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P ++P+ +DL  W++   L  D + +I R     
Sbjct: 27  NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +S+ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E   
Sbjct: 81  TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+ A++   + +          TG      +    +        G   Y GF  
Sbjct: 141 WVVDTESLQARSRILIPFY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 185

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY +E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 246 LIDLEKAYLYELYDG---FDLAEDAIRFSNYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324


>gi|50365347|ref|YP_053772.1| ribonucleotide-diphosphate reductase subunit beta [Mesoplasma
           florum L1]
 gi|50363903|gb|AAT75888.1| ribonucleoside-diphosphate reductase beta chain [Mesoplasma florum
           L1]
          Length = 340

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   LT + + +I R     
Sbjct: 31  NWNVVNDEKDLEVWN---RITQNFWLPEKIPVSNDLTSWRT---LTPEWQELITRTFTGL 84

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   +      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 85  TLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSYGSIFSTLCSSEQIEEAHE 144

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++  +A   + Y                + + L+       +  G   Y GF  
Sbjct: 145 WVINTETLQERAKALIPYY--------------VNDDPLKSKV-AAALMPGFLLYGGFYL 189

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +       E ++    +L+E
Sbjct: 190 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYE 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY  E      +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 250 LIDLEKAYLKELYEDFGL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFTQ 306

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
                 +  +FF    + Y  G   E + D
Sbjct: 307 LSARADENHDFFSGNGSSYIMGVSEETEDD 336


>gi|260904664|ref|ZP_05912986.1| ribonucleoside-diphosphate reductase beta chain [Brevibacterium
           linens BL2]
          Length = 341

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 36/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W+    LT  ER +  R     
Sbjct: 32  NWNRVGDEKDLEVWN---RLTANFWLPEKVPLSNDIPAWQ---RLTQVERTLTMRVFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ A    +   +              AF ++VH+ ++  + ++L    +  + + 
Sbjct: 86  TMLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSTTVEIDDAYR 145

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    LQ+            +       L               Y GF  
Sbjct: 146 WAVGNDLLQQRCKKVLQHYYGDDPLKRKVSSTLLSSLLL---------------YAGFYL 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +          +E ++ +  +L +
Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGIENQTSARQEEMREFTYELLED 250

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
              LE+AY+ E   P G           ++++ AN+    +G    F   E   NP    
Sbjct: 251 LYELELAYSGELYEPLGL----MDDVAVFVRYNANKALMNLGYPARFNSDETQVNPEILA 306

Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +      +  +FF    + Y  G     ++  WD
Sbjct: 307 ALAPGADENHDFFSGSGSSYVIGKGEDTSDDDWD 340


>gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 319

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  IKR L   A
Sbjct: 7   RESYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    +     +Y                 +  ++ +  F ++ E    ++ FA +LS
Sbjct: 122 EVPVFKERNTVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATVLS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    +  +A    +   DE LH N GI ++ +I  E P +  K  +  +   +    
Sbjct: 170 FARFKGYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYI 228

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
           +LE         +G +          YM++  +    Q+GL   F  + +   P  W  E
Sbjct: 229 VLEDKMLDWIFEQGELDFFGKKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   +  +FF  R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308


>gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 336

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P ++P+ +DL  W++   L  D + +I R     
Sbjct: 27  NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +S+ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E   
Sbjct: 81  TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+ A++   + +          TG      +    +        G   Y GF  
Sbjct: 141 WVVDTESLQARSRILIPFY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 185

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE AY +E          A    ++  + A +    +G +  F   E   +P  +  
Sbjct: 246 LIDLEKAYLYELYDG---FDLAEDAIRFSIYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324


>gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
 gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
          Length = 321

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 123/329 (37%), Gaps = 26/329 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
            R      + N+L     G+    +       W+  E+P+ DD  +W +   L+ DER +
Sbjct: 1   MRKNREAINWNRLNN---GYTKMFWDQNIRQFWVDEEIPISDDKLVWNT---LSVDERDV 54

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--G 139
            ++ LG     ++   +  +  I   + N + +  L      E +H+ ++  I +SL   
Sbjct: 55  YEKVLGGLTLLDTEQGSVGMPRIALAIDNLDYKPILGFMGAMEHMHAKSYSSIFSSLSNI 114

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
                +F+  +   +   K    L     +            D+  L       V  E  
Sbjct: 115 DRIDYIFDWVKTYRNYQEKLELILGKYNNIH-----------DRMSLYQALCTSVFLETF 163

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   L L    KMV   E    I+RDES+H  F   +  +   +      +   +
Sbjct: 164 LFYSGFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFDKMTMKEQELAYK 223

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
           +   +L +   LE  Y  E      +     + + ++++ A++    +G +  F   +  
Sbjct: 224 EMLLILEKLYSLEREYTKELYSCVGLE---SAVDVFVRYNADKALMNLGFDTKFNIKDTD 280

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            NP   ++ +    K  +FF T+   Y +
Sbjct: 281 VNPLV-LNGLRTDTKTHDFFSTKGNGYIK 308


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN
Sbjct: 2   RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE
Sbjct: 62  APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 121

Query: 349 LKWD 352
           LKWD
Sbjct: 122 LKWD 125


>gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
 gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1]
          Length = 310

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 116/308 (37%), Gaps = 25/308 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT +E    K    F A+++ L+  +
Sbjct: 16  DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKLVFAFLAAADDLINLD 72

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155
           I   +     + + + Y   Q   E VHS T+  +   L   +    + Y       P+I
Sbjct: 73  I-GNLMTLFLHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +W                 +      L + ++  ++ EG++F   FA I  L R N
Sbjct: 132 KKKIDWL-------------NRVQVETDLTLPEKYILMILLEGIFFVASFAAIAFLRRRN 178

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V + +    I RDE++H      + N    ++     K   ++   +  EA  +E  +
Sbjct: 179 IFVVMCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNF 234

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    ++  + + ++++  +R    IG+  +F        +   ++ + K  NF
Sbjct: 235 LASRAPQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDPSFPLTLMSIDKNVNF 294

Query: 336 FETRVTEY 343
           FE R T Y
Sbjct: 295 FEHRSTAY 302


>gi|12045084|ref|NP_072895.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           genitalium G37]
 gi|255660230|ref|ZP_05405639.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           genitalium G37]
 gi|1350602|sp|P47471|RIR2_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3844832|gb|AAC71450.1| ribonucleoside-diphosphate reductase, beta chain [Mycoplasma
           genitalium G37]
 gi|166078981|gb|ABY79599.1| ribonucleoside-diphosphate reductase, beta chain [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 340

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 104/332 (31%), Gaps = 26/332 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           K              +      E +     N W+P ++P+ +D+  WK    L+ D + +
Sbjct: 20  KNNFQGNLRSVNWNLVDDEKDLEVWNRIVQNFWLPEKIPVSNDIPSWK---KLSKDWQDL 76

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I +        +++ A    +    H      +      AF   VH+ ++  I ++L   
Sbjct: 77  ITKTFTGLTLLDTIQATIGDICQIDHALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTS 136

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           E             S+  +A   + Y          TG      +    L        G 
Sbjct: 137 EQINAAHEWVVNTESLQKRAKALIPYY---------TGNDPLKSKVAAALMP------GF 181

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             Y GF     L    ++   ++  + I+RD+ +H  +      +   + P    KE + 
Sbjct: 182 LLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKA 241

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
               +++    LE  Y  E      +        ++  + A +    +G +  F   E  
Sbjct: 242 FVFELMYRLIELEKDYLKELYEGFGI---VDDAIKFSVYNAGKFLQNLGYDSPFTAAETR 298

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             P  +        +  +FF    + Y  G  
Sbjct: 299 IKPEIFAQLSARADENHDFFSGNGSSYVMGVS 330


>gi|31544249|ref|NP_852827.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(low)]
 gi|26398734|sp|Q9XC20|RIR2_MYCGA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|5565932|gb|AAD45275.1|AF152114_3 ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           gallisepticum]
 gi|31541093|gb|AAP56395.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930288|gb|ADC30227.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(high)]
          Length = 339

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + ++ +    + N +   K    W        N W+P ++P+ +DL  W   N LT + 
Sbjct: 19  ANGQKGVMRSINWNVINDPKDLEVW---TRVTQNFWLPEKIPVSNDLKSW---NELTPEW 72

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + ++ R        +++      +A   +      +      +F   VH+ ++  I ++L
Sbjct: 73  KQLVTRTFTGLTLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTL 132

Query: 139 GLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
              +   E          + A+A + + Y                  + L+       + 
Sbjct: 133 NTSDEIEEAHEWVINNEKLQARAKFLVPYY--------------TSDDPLKSKI-AAALM 177

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            G   Y GF     L    K+   ++  + I+RD+ +H  +          + P    +E
Sbjct: 178 PGFLLYGGFYLPFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEE 237

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +++    +L++   LE  +  E      +   A     +  + A +     G E  F   
Sbjct: 238 YKKFVFEILYKLIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPE 294

Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           E   +P  +        +  +FF    + Y  G
Sbjct: 295 ETKISPEVFAQLSARADENHDFFSGNGSSYIMG 327


>gi|262184725|ref|ZP_06044146.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 306

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 115/319 (36%), Gaps = 31/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +DL  W+    +T +ER +  R      + +++ A    + 
Sbjct: 8   EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 64

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161
             +              AF ++VH+ ++  + ++L    +  E +        + A+A  
Sbjct: 65  QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +              D  +  +    +  ++      Y GF   L       +   A
Sbjct: 125 VLAHY----------FGPDPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTA 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +       L  KE    + ++L E   LE+ Y+ E   
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYE 229

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              +         ++++ AN+    +G    F   E   NP    +      +  +FF  
Sbjct: 230 PLGL---MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSG 286

Query: 339 RVTEYQQG-----AELKWD 352
             + Y  G     ++  WD
Sbjct: 287 SGSSYVIGTAEETSDDDWD 305


>gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 205

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           FN    +PSI  KA WA ++               A         V +   EG++F   F
Sbjct: 14  FNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEGIFFSGSF 59

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L +   M G+    + I RDE LH +F   +   I  +               ++
Sbjct: 60  AAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT---------VIEDIV 110

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E
Sbjct: 111 REAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-E 168

Query: 326 VIDLKKEKNFFETRVTEYQQG 346
            I L+ + NFFE R   YQ+G
Sbjct: 169 NISLQGKTNFFERREANYQKG 189


>gi|284931055|gb|ADC30993.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. F]
          Length = 339

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 112/333 (33%), Gaps = 29/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + ++ +    + N +   K    W        N W+P ++P+ +DL  W   N LT + 
Sbjct: 19  ANGQKGVMRSINWNVINDPKDLEVW---TRVTQNFWLPEKIPVSNDLKSW---NELTPEW 72

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + ++ R        +++      +A   +      +      +F   VH+ ++  I ++L
Sbjct: 73  KQLVTRTFTGLTLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTL 132

Query: 139 GLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
              +   E          + A+A + + Y                  + L+       + 
Sbjct: 133 NTSDEIEEAHEWVINNEKLQARAKFLVPYY--------------TSDDPLKSKI-AAALM 177

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            G   Y GF     L    K+   ++  + I+RD+ +H  +          + P    +E
Sbjct: 178 PGFLLYGGFYLPFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEE 237

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +++    +L +   LE  +  E      +   A     +  + A +     G E  F   
Sbjct: 238 YKKFVFEILDKLIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPE 294

Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           E   +P  +        +  +FF    + Y  G
Sbjct: 295 ETKISPEVFAQLSARADENHDFFSGNGSSYIMG 327


>gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 338

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 123/335 (36%), Gaps = 34/335 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+      +N W+P +VP+ +DL  W   N LTD ER +  +     
Sbjct: 25  NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++          +      AF +AVH+ ++  + +++   E     + 
Sbjct: 79  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P++  +A   +Q+                  +      V   +   +  Y GF  
Sbjct: 139 WAIGNPALQRRATAVMQHY---------------YGDDPLKRKVAATLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P   + E ++ + T++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFTLVEE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPW 322
              LE  Y+ +   +      +       ++ + A++    +G  P ++       P   
Sbjct: 243 LLELEKEYSGDLYGETLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEPEII 302

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +   D  +  +FF    + Y  G      E  WD
Sbjct: 303 AALAPDSNETHDFFSGSGSSYVIGRAESTEEDDWD 337


>gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 841

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                 +  + +   EG++F   F  I  L +   M G+    + I R E LH +F   +
Sbjct: 666 SSTLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLL 725

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + ++ + P        QK   ++HEA  +E  +  E +P   +G+ A     Y++F+ +
Sbjct: 726 YSLLQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVD 778

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           R    +G E  +   ENPF WM E I L+   NFF+ R+ +YQ+ + + 
Sbjct: 779 RLLVALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 825


>gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 338

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 121/335 (36%), Gaps = 34/335 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+      +N W+P +VP+ +DL  W   N LTD ER +  +     
Sbjct: 25  NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++          +      AF +AVH+ ++  + +++   E     + 
Sbjct: 79  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P++  +A   +Q+                  +      V   +   +  Y GF  
Sbjct: 139 WAIGNPALQRRATAVMQHY---------------YGDDPLKRKVAATLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P   + E ++ +  ++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFALVEE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPW 322
              LE  Y+ +          +       ++ + A++    +G  P ++       P   
Sbjct: 243 LLELEKEYSGDLYGGTLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEPEII 302

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +   D  +  +FF    + Y  G      E  WD
Sbjct: 303 AALAPDSNETHDFFSGSGSSYVIGRAESTEEDDWD 337


>gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
 gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
          Length = 338

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P  +PM +D+  W +   L+DD + ++ R     
Sbjct: 29  NWNVMNDDKDLEVWN---RVTQNFWLPENIPMSNDIPSWNT---LSDDWKQLVTRTFTGL 82

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A+   +A  ++      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 83  TLLDTVQASIGDIAQIKNSVTDHEQVIYANFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 142

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y          TG      +    L        G   Y GF  
Sbjct: 143 WVVNNDALQARAKLLIPYY---------TGDDPLRSKVAAALMP------GFLLYGGFYL 187

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q   +       E ++    ++ E
Sbjct: 188 PFYLASRAKLPNTSDMIRLILRDKVIHNYYSGYKYQQKIAKENDARKAEMKKFVFDLMEE 247

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
              LE  Y  +      +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 248 EIELEKIYLRDLYKGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETHIAPEVFAQ 304

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 305 LSARADENHDFFSGSGSSYVIGTTEETTDEDWD 337


>gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
          Length = 316

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 126/309 (40%), Gaps = 28/309 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK+   L+D E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163
           ++    + +  L    F E++H+ T+  I+ SL    D  E+++     P +  KA    
Sbjct: 77  KNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFKAEKI- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                  +  +  GT          + V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 136 -------NEVYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E       EF     T L+E    E AY  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEEVYSEI 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            +       + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 242 GL---VEDIKTFVKYNANKSLQNMGFGIYFEDALVNDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQGAE 348
              Y  G  
Sbjct: 298 GAGYLMGGA 306


>gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
 gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
          Length = 293

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 19/296 (6%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           + TE     D+  +++   + D ER ++ R +   +  E  V       +Y +   PE  
Sbjct: 1   LHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAISQVEVNV-KRFWGELYCYFPKPEMD 57

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
                 A  E  H   + +++  LGL+  E+F+   E+  +  +  +           SF
Sbjct: 58  DVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIHEIEPLMNRIRYM---------ESF 106

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESL 233
                    EF+  L +F +  E +  +  F  ++S  +  N   GI+   +   ++E +
Sbjct: 107 MKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEI 166

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSC 292
           H  FGI +   ++ E+  L+T EF +  +T+ ++A   E         +G +      + 
Sbjct: 167 HGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATV 226

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
           E Y++   N     +GLEP             W    I   KE +FF  R T+Y +
Sbjct: 227 ENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSK 282


>gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
 gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
          Length = 305

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 108/302 (35%), Gaps = 20/302 (6%)

Query: 47  LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYR 106
                N W P+++ +  D+A       L   +    K    F A +E LV  NI  A+  
Sbjct: 21  QETWQNRWFPSQISLTSDVA---CLQSLNPRDLEFYKFLFSFLAMAEKLVNFNI-QALVA 76

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
              + +   Y   Q   E +H   +  I+     +          V  +   A   +   
Sbjct: 77  DFHSHDLEHYYTEQEAMENIHGKVYANILNMFFKN---------NVGEMQKYAREIVGDE 127

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
              +   +  G     +   + + VF ++ EG++F + F  I +L     M G+     Y
Sbjct: 128 ALAAKLHWLHGRVSEAKTRAEKVLVF-LLIEGIFFISSFYSIATLRVRGLMNGVCMANDY 186

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE +H      + N +  +      K   +    +  EA  +E  +      +G   
Sbjct: 187 ISRDEWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFI-LAKGRGVSH 241

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +N     ++++  A+R    I + P++  T+ P           K  NFFE   ++Y   
Sbjct: 242 VNVADINRFLEATADRILKSINVGPVYG-TQPPPNCPLVYTGCLKNVNFFERESSDYTTA 300

Query: 347 AE 348
            +
Sbjct: 301 VD 302


>gi|293363858|ref|ZP_06610594.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           alligatoris A21JP2]
 gi|292552348|gb|EFF41122.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           alligatoris A21JP2]
          Length = 340

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +D+  W++   L+D+ + +I R     
Sbjct: 31  NWNIIDDDKDLEVWN---RITQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A   +      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 85  TMLDTIQATVCDIAQIPNSLTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSEQIEEAHE 144

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  +A   L Y                  E      V   +  G   Y GF  
Sbjct: 145 WVIDNEDLQERARLLLPYYHN---------------EDPLKSKVAAALMPGFLLYGGFYL 189

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +           E +     +L +
Sbjct: 190 PFWLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVARLSEARKAEMKTFVFELLDK 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
             + E  +  +          A    ++  + A +    +G +  F   E    P  +  
Sbjct: 250 LIVAEKKFLTKLYEG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFAQ 306

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328


>gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa]
          Length = 146

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/119 (68%), Positives = 99/119 (83%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 25  HKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNG 84

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           LT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 85  LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143


>gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
 gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 337

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 22/341 (6%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
             +    +D+K    + +        KY W    Y     N W P+EV    +    K+ 
Sbjct: 8   NPQGEEILDEKIYGGSPTGFVDFNRSKYRWDSNIYDLMNANTWFPSEVNTSTEK---KNF 64

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LTD+E+ + K      + ++S      +    R  +N   +  +  Q  +E  HS ++
Sbjct: 65  EALTDNEQSIYKMTFAQLSFNDSAQ-EEYLSDFRRLANNRLVKSVISLQIMQEVNHSKSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
             ++ + G  E E+FN+Y        K + AL       +  F         + +    +
Sbjct: 124 AVLLDACGNSE-EVFNLY--------KYDAALNKKNLQVAEQFAKYIDGGSADKMLLSAM 174

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENP 250
             V  EG++F  GF+ I  LG  +K+ G  +  ++I RDE   HL    ++   I+ EN 
Sbjct: 175 ASVNLEGIYFLLGFSYIYLLG--DKVPGARDMIKFIARDELNTHLPLFANIFKTIQKENN 232

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGL 309
                     +  M+ +A  +E+ Y H  + +   +G+     EQ +   AN R  +IGL
Sbjct: 233 --IATSTIDAAYKMIQDAVKIELEYGHYLLDQFPIMGVTHELMEQTVYNYANDRLKKIGL 290

Query: 310 EPLFKYTENPF--PWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           +P+F  +   +    +++ +++ + + NFFE+ V+ Y + +
Sbjct: 291 DPIFDESATTYLQKLVTKHLEMNEVKSNFFESNVSNYAKSS 331


>gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 341

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 116/333 (34%), Gaps = 29/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +++ R      + N++   K    W      C N W+P ++P+ +DL  W+S   L    
Sbjct: 21  LNNFRGKMRSVNWNKIDDEKDLEVWN---RVCQNFWLPEKIPVSNDLETWRS---LDPIW 74

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + +I R        +++ A    +A   H      +      AF  A+H+ ++  I ++L
Sbjct: 75  QKVITRTFTGLTLLDTIQATIGDIAQLPHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTL 134

Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
              E   E         S+  +A   + +          TG      +    L       
Sbjct: 135 CSTEQINEAHEWVINTKSLQDRAKILIPFY---------TGKDPLKSKVAAALMP----- 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            G   Y GF     L    K+   ++  + I+RD+ +H  +      +   +      KE
Sbjct: 181 -GFLLYGGFYLPFYLSSRMKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLSLEKQKE 239

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++    +L++   LE  Y +E   +  +   A    ++  + A +    +G +  F   
Sbjct: 240 MKEFVFDLLYKLIDLEKKYLYELYEEIGL---AEDAIKFSLYNAGKFLQNLGYDSPFTSE 296

Query: 317 ENPFP---WMSEVIDLKKEKNFFETRVTEYQQG 346
           E       +        +  +FF    + Y  G
Sbjct: 297 ETKIDAEIFSQLSARADENHDFFSGNGSSYVMG 329


>gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18]
 gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18]
          Length = 392

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 129/329 (39%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A +   N L + ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A+   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148

Query: 158 KANWALQYTQTLSSPSFTT-----------GTKDADQ-----------------EFLQDL 189
           +A     Y   + + +               T +AD+                 + L   
Sbjct: 149 RAESIGHYYDDVLNKTRQWQNQIAFVELAKETPEADERLERAIKQESIAKRALMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     ++ Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTG 268

Query: 249 -NPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
            +   W K   E + ++  +  E    E  +A      G +  L+     +++ ++   R
Sbjct: 269 VDGDEWVKIAHECEAEAAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSR 328

Query: 304 CHQIGL--EPLFKYTENPFPWMSEVIDLK 330
             Q GL  E + + T++P PW+ E ++  
Sbjct: 329 MKQCGLPCEIVLESTKHPIPWIREYLNSD 357


>gi|303232548|ref|ZP_07319234.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
           vaginae PB189-T1-4]
 gi|302481335|gb|EFL44409.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
           vaginae PB189-T1-4]
          Length = 351

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P  +P+ +DL  W +   L +  + +I R     
Sbjct: 42  NWNRIADDKDLEVWN---RVTQNFWLPENIPVSNDLPSWNT---LDERWQQLIIRTFTGL 95

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A+   +A  RH      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 96  TLLDTVQASVGDVAQIRHAITDIEQANYANFAFMVAVHARSYGTIFSTLCSSEQIDEAQA 155

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y                 Q+      V   +  G   Y GF  
Sbjct: 156 WVVHNDALQARAQALIPYY---------------TQDDALKSKVAAALMPGFLLYGGFYL 200

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q             ++    +L+ 
Sbjct: 201 PFYLSARGKLPNTSDMIRLILRDKVIHNYYSGYKYQQKLKRLAADEQAAMKEFVFDLLYH 260

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y  E          A     +  + A +    +G +  F   E    P  +  
Sbjct: 261 LIDLEKTYLRELYDG---FDLADDAIAFSLYNAGKFLQNLGYDSPFTAQETHIEPEVFAQ 317

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y  G  
Sbjct: 318 LSARADENHDFFSGSGSSYVIGTA 341


>gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 350

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 131/349 (37%), Gaps = 25/349 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +   + K      ++ N L   KY      Y    +  W P ++ +Q DLA W 
Sbjct: 1   MKTKNPQPQTNSKIHFQG-ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW- 55

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-V 126
             + LT +E+    RNL      ++   +  +  I R L   E   +  L      E  V
Sbjct: 56  --SELTIEEKTAYSRNLLVLTFLDTYQGDLGMPIIARSLEEHEHQKKATLNFMGAMENAV 113

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GT 178
           H+ ++  I  S   ++   +LF    +  S+       ++  + L    +          
Sbjct: 114 HAKSYSNIFMSYLTNKEINQLFLWGNQQKSLQTMMQVIVKVYEALEDQIYLKKQTSLQFI 173

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +   ++         V  E   FY+GF   L      K++   E    I+RDES+H  + 
Sbjct: 174 ELEFKKTQWKAMAVSVFLETWLFYSGFYYPLYFYGQGKLMQSGEIINLIIRDESIHGVY- 232

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQ 297
              + ++  E   L+ K  +Q  +T L +            +   +  LN      ++++
Sbjct: 233 ---VGRLATELYQLFDKPTKQTLKTWLDDLMQQLYQTKTSLVNAIYHKLNLEDDVNKFVR 289

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           + AN+    +G +  F  +EN  P +   ++ + +  + F  +   YQ+
Sbjct: 290 YNANKALMNLGFDAFFP-SENVNPVIINGLNTETKTMDNFSMKGNGYQK 337


>gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4]
 gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4]
          Length = 302

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 107/294 (36%), Gaps = 20/294 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W    + +  D    K    L + +    K    F A +E LV  NI   +     + 
Sbjct: 23  NRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESH 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y   Q   E VH  T+  I+  L   +    N Y E          A+     L +
Sbjct: 79  DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAE----------AIMADGALQA 128

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  K A    L +  + +++ EG++F + F  I  L     M G+     YI RDE
Sbjct: 129 KISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYISRDE 188

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH      + N +         +   Q  + +   A  +E A+  E    G   ++  +
Sbjct: 189 LLHTRAASLLYNSMTA----PADRPGAQWIQELFRTAVEVETAFI-EARGWGVTLVDVQA 243

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
             Q+++  A+R    IGL PL+  T  P       +   K+ NFFE    +Y  
Sbjct: 244 IRQFLEATADRILGDIGLPPLYG-TPPPRDCPLTYMTSIKQTNFFEQESADYTM 296


>gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 159

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 92/143 (64%), Positives = 113/143 (79%), Gaps = 2/143 (1%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS + 
Sbjct: 11  KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSIT 156
           I  SLGLDEGE+FN Y E  SI 
Sbjct: 130 ICESLGLDEGEVFNAYNERASIF 152


>gi|213023521|ref|ZP_03337968.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 256

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 23/266 (8%)

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++       ++      P     L   +F EAVH+ ++  I ++L    +    + 
Sbjct: 1   TLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYA 60

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L +                  E L+      V  E   FY+GF  
Sbjct: 61  WSEENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWL 105

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E
Sbjct: 106 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLME 165

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               EI Y      +   G      + ++ + AN+    +G E LF       NP    +
Sbjct: 166 LYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAA 222

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 223 LSPNADENHDFFSGSGSSYVMGKTVE 248


>gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 392

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 128/329 (38%), Gaps = 39/329 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A +   N L + ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                A+   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148

Query: 158 KANWALQYTQTLSSPSFTT-----------GTKDADQ-----------------EFLQDL 189
           +A     Y   + + +               T + DQ                 + L   
Sbjct: 149 RAESIGYYYDDVLNKTRQWQNQIAFVELAKETPEVDQRLERAIKQEAIAKRALMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     ++ Q++  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTG 268

Query: 249 -NPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303
            +   W K   E + ++  +  E    E  +A      G +  L+     +++ ++   R
Sbjct: 269 VDGDEWVKIAHECEAEAAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSR 328

Query: 304 CHQIGL--EPLFKYTENPFPWMSEVIDLK 330
             Q GL  E + + T++P PW+ E ++  
Sbjct: 329 MKQCGLPCEIVLESTKHPIPWIREYLNSD 357


>gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
 gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
          Length = 338

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 122/350 (34%), Gaps = 29/350 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A +T L P+ +       +D  +             +          +  N W+ TE+  
Sbjct: 4   AESTALFPVSSPCPEEVGNDYPVPTCPHPERYFYTSQCPDINHLRSLSILNRWLETELVF 63

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D         LT  E    +    F ++++ LV  N+   +       +   Y + Q 
Sbjct: 64  AGDEED---VAALTPGELGFYRFLFTFLSAADDLVTENL-GNLAALFPQKDILHYYVEQE 119

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTG 177
             EAVH+  +  +   L  +       Y       P+I  K  W                
Sbjct: 120 CIEAVHARVYGIVQLVLFANNEASRREYVAHTINHPAIRDKVEWLE-------------- 165

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            +  +   + + ++  ++ EG++F   FA I  L   N +    +    I RDE++H   
Sbjct: 166 ARVGECSSVAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQSNDLISRDEAIHTTA 225

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP---SCEQ 294
              + N      P    K    +   +  EA  +EI + H   P+    L+A      + 
Sbjct: 226 SCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRDSHILDAAALRQIDN 281

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           Y+ F A+R    I L PLF        +   ++  +K  NFFE+R T Y 
Sbjct: 282 YVHFCADRLLKMIKLPPLFDAPAPDCSFPLALMFTEKHTNFFESRSTAYA 331


>gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows
           phytoplasma OY-M]
 gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma
           OY-M]
          Length = 350

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 127/330 (38%), Gaps = 24/330 (7%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ N L   KY      Y    +  W P ++ +Q DLA W   + LT +E+    RNL  
Sbjct: 19  ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTLEEKTAYSRNLLV 72

Query: 89  FASSESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--G 143
               ++   +  +  I R L   E   +  L      E  VH+ ++  I  S   ++   
Sbjct: 73  LTFLDTYQGDLGMPVIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GTKDADQEFLQDLFVFYVVFE 197
           +LF    +  S+       ++  + L    +         ++   ++         V  E
Sbjct: 133 QLFLWGNQQTSLQTMMQVIVKVYEALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVFLE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   L      K++   E    I+RDES+H  +    + ++  E   L+ K  
Sbjct: 193 TWLFYSGFYYSLYFYGQGKLMQSGEIINLIIRDESIHGVY----VGRLATEIYQLFDKPT 248

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ  +T L +            +   +  LN      +++++ AN+    +G +  F  +
Sbjct: 249 QQTLKTWLDDLMQQLYQAQTSLVHAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           EN  P +   ++ + +  + F  +   YQ+
Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337


>gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 350

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 46/347 (13%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D++ W   N L DD R +  +     
Sbjct: 25  NWNRLQDPKDLEVWQ---RLTGNFWLPEKVPLSNDISSW---NSLPDDLRQLTVKIFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++          +      AF ++VH+ ++  + ++L       + + 
Sbjct: 79  TLLDTVQATVGEVSQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLCSTPEITDAYG 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  +A   +++             +D  +  +    +  ++      Y GF  
Sbjct: 139 WATQNTVLQRRATTVMKHYYA----------RDPLKRKVAATLLSSLLL-----YAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    K++  A+  + I+RD+++H  +      +    +P     E Q+ + +++ E
Sbjct: 184 PLWLSCRAKLMNTADMIRLILRDKAVHGYYSGYKFQRGLDAHPERKN-ELQEFTYSLVDE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPS--------------CEQYMQFIANRRCHQIGLEPLF 313
              LE  Y+ E         N+                   ++ + AN+    +G   L+
Sbjct: 243 LLNLEKIYSGELYGGITAPNNSHKSAESSFTSRPNFAGVMAFVYYNANKALMNLGYPALY 302

Query: 314 K---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
           +       P    +   +  +  +FF      Y  G      E  WD
Sbjct: 303 EDEAERTEPDILAALTPEASETHDFFSGSGASYVIGKTEATEESDWD 349


>gi|300859142|ref|YP_003784125.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686596|gb|ADK29518.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206836|gb|ADL11178.1| Ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis C231]
 gi|302331398|gb|ADL21592.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277088|gb|ADO26987.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           pseudotuberculosis I19]
          Length = 340

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 117/334 (35%), Gaps = 33/334 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
                +     E +    +N W+P +VP+ +D+  W+   G+ ++ R ++ R        
Sbjct: 25  NWNHTEDPKDMEVWQRLTSNFWLPEKVPLSNDIPTWR---GMGENYRTLVTRTFTGLTLL 81

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++ A    ++          +      AF +AVH+ ++  + ++L    +  E ++   
Sbjct: 82  DTVQATVGEISQIPDARTEHEQAVYTNIAFMQAVHARSYSSVFSTLCSSAEIDEAYSWAV 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
             P +  +A+  + +                  +      V   +   +  Y GF   L 
Sbjct: 142 SNPLLQQRASSVMSHY---------------YGDDPLKRKVASTLLSSLLLYAGFYLPLW 186

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L    +++  A+  + I+RD+++H  +      +     P     E +  + +   E   
Sbjct: 187 LSTRGQLMNTADMIRLILRDKAVHGYYSGYKYQRGLDAKPQ-RKDEMEDFTYSFCDELLA 245

Query: 271 LEIAYAHETMPKGFVGL----NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
           LE  Y+ +                    ++ + A++    +G  P ++      +P    
Sbjct: 246 LEKDYSADLYASVDTLEEPRPTIDGVMAFVYYNADKALMNLGYAPAYELQAAHVSPEIIA 305

Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +   +  +  +FF    + Y  G      E  WD
Sbjct: 306 ALTPESNETHDFFSGSGSSYIIGRAENTTESDWD 339


>gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2]
 gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2]
          Length = 339

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 128/355 (36%), Gaps = 44/355 (12%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKY------GWAWEKYLSACNNHWMP 56
               + P + G     V D  + +         P +Y               +  N W+ 
Sbjct: 9   PAAAIQPRERGAAAAAVHDHPVPD---------PERYFYTTQCPDINHLRSLSILNRWLE 59

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
           +E+    D        GLTD+E    +    F ++++ LV  N+   +       +   Y
Sbjct: 60  SELVFAGDEED---VAGLTDEELNFYRFLFTFLSAADDLVTENL-GGLSGLFPQKDILHY 115

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSP 172
            + Q   E VHS  +  I   L  ++ +    Y       P+I  K +W     Q     
Sbjct: 116 YVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQAC--- 172

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                      E + + F+  ++ EG++F   FA I  +   N +    +    I RDE+
Sbjct: 173 -----------ESVPEKFILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLISRDEA 221

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS- 291
           +H      + N     +     K   ++   +  EA  +EI +     P     L+A + 
Sbjct: 222 VHTTASCYIYNNYLAGH----RKPEPERVYRLFREAVEIEIGFIRSQAPADSRILDAAAL 277

Query: 292 --CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
              E Y++F A+R    I ++PLF        +   ++  +K  NFFE R T Y 
Sbjct: 278 AAIENYVRFSADRLLALIEMKPLFGAPAPAPSFPLNLMSTEKHTNFFERRSTAYA 332


>gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2]
 gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2]
 gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine
           herpesvirus 2]
          Length = 305

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 109/304 (35%), Gaps = 20/304 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            ++       N W P ++ +  D+   K    L++ E    K    F   +E+LV  NI 
Sbjct: 16  FFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLGMAETLVNFNID 72

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +       + + Y   Q   E VH   +  I+  L  +          +    A A  
Sbjct: 73  ELVAG-FEIHDVKHYYCEQMAMECVHGKVYFNILNMLFKN---------NIAETRAFAES 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L+         +  G     +   + + +FY++ EG++F + F  I  L     M G+ 
Sbjct: 123 VLEDEPLRKKLQWLEGKIKTAESAAEKVLIFYLI-EGIFFISSFYCIGLLRVKGVMPGVC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI RDE LH      + N +  +      K  +     +  EA  +E  +      
Sbjct: 182 MANDYISRDELLHTRAAALLYNTVIPQEG----KPSEAWIIDLFKEAVSIEDEFIR-AKS 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
                +N     ++++  A+R  + IGL   FK +E P           K  +FFE   T
Sbjct: 237 GEVGFVNVADIRRFLEATADRLLNSIGLPVHFK-SEPPKSCPLTYTGCIKNVSFFEREST 295

Query: 342 EYQQ 345
           EY  
Sbjct: 296 EYST 299


>gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
 gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
          Length = 379

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 38/328 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A ++    L   ++ +   NL + +  +S+  
Sbjct: 20  RHRTFEELIEKQLSFFWRPEEVNLMTDRAQFE---KLPVGQQNVFLDNLKYQSLLDSIQG 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    +     F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 77  RAPAAVLSALISDPSLDTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMK 136

Query: 158 KANWALQYTQTLSSPS------------------------FTTGTKDADQEFLQDLFVFY 193
           +A     Y   +   +                        +     DA +E ++ L++  
Sbjct: 137 RAETIGHYYDDVILKTRLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCL 196

Query: 194 VV---FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-- 247
            V    E + FY  FA   +  +    M G ++  ++I RDE LHL     +I Q+++  
Sbjct: 197 HVINGLEAIRFYVSFACTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGT 256

Query: 248 --ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304
             E      +E +Q++  +  E    E  +A      G V  L+      ++ ++   R 
Sbjct: 257 DGEEWVQIARECEQEAVDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRM 316

Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330
              GL  P+      +P PW+ E ++  
Sbjct: 317 RSCGLPCPITDAPVRHPIPWIREYLNSD 344


>gi|240047145|ref|YP_002960533.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           conjunctivae HRC/581]
 gi|239984717|emb|CAT04689.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           conjunctivae]
          Length = 344

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W + +    N W+P ++P+ +DL  W+S   L+   + +I R     
Sbjct: 35  NWNVINDPKDLEVWNRVVQ---NFWIPEKIPVSNDLDTWRS---LSPVWQRLITRTFTGL 88

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 89  TLLDTIQATIGDVAQIQHSLTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                  + L+      ++  G   Y GF  
Sbjct: 149 WVINNKKLQERAKALIPFY--------------VSDDPLKSKVAAAMMP-GFLLYGGFYL 193

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +      +E +     +L++
Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQRKVEKLSPEKQQEMKDFVFDLLYK 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y +E   +  +   A    ++  + A +    +G +  F   E    P  +  
Sbjct: 254 LIDLEKEYLYELYEEVDL---AEPAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 310

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                 +  +FF    + Y  G
Sbjct: 311 LSARADENHDFFSGNGSSYVMG 332


>gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1]
 gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain
 gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1]
          Length = 579

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 145/334 (43%), Gaps = 36/334 (10%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D  + +  + D   L P  Y    +      ++ W  TE+  + D+  W+    ++++ER
Sbjct: 60  DHHKDIVGKYDHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQ---ISENER 116

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             +++ L FFA  ++LV + I +        PEC+ ++  Q   E VH   +   + +L 
Sbjct: 117 DCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALV 175

Query: 140 LDE---GELFNMYR--EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
            D+    +L N Y+  E   I  K +W  +                 + +   ++ V  V
Sbjct: 176 KDKIYLADLVNAYKDPEFAPIKKKVDWLGKII-------------SVENDSRGEMVVGQV 222

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             E + F   FA +L   RA  M  +    ++I RDE+LH  F  +++  +         
Sbjct: 223 CTEAIMFAASFAILLKF-RAPYMRALVLGNEFIRRDETLHFRFYAELLRLMP-------D 274

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +   ++   +L EAT +E+ +A   +P+G   +      Q+++   N+ C  + + P++ 
Sbjct: 275 RPSDERIAELLTEATEIELEFAEYVVPEGVKYITKDRLIQHVKANTNQVCEMLDINPIYF 334

Query: 315 YTE-----NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +     +P  +M+ +   +K  NFFE + TEY
Sbjct: 335 DQKGNVLLSPLLYMNTLESEQKI-NFFEGKATEY 367


>gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
 gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
          Length = 339

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 19/319 (5%)

Query: 36  PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
           P  Y WA E   + A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 12  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+    
Sbjct: 72  FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 126

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           ++   S     +      +     S++             +    +  EG+  +  F  +
Sbjct: 127 WKAFASYKEMRDKLEVMGENRIDASWSE------PLQAACILAQLLTGEGVGLFGAFTVL 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q+ R ++ + 
Sbjct: 181 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQEIRYLIEDY 240

Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              E+ Y      KG    L      +Y+ ++   R  +  L    +  ENP PWM  +I
Sbjct: 241 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 300

Query: 328 DLKKEKNFFETRVTEYQQG 346
           +  +  NFFE +VT+Y   
Sbjct: 301 NAARHDNFFEKKVTDYSHS 319


>gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
 gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit;
           Contains: RecName: Full=Aae nrdB intein; AltName:
           Full=Aae RIR2 intein
 gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
          Length = 696

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 123/285 (43%), Gaps = 23/285 (8%)

Query: 10  IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   +       ++++    +++ +L  +KY WA++ Y      N W+P E+ M +D   
Sbjct: 14  IFNPQGDREASKRKIIKGNPTNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQ 73

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +++   L+D E+   +  L F  + +S   + +     R ++ PE    +  Q F+E+VH
Sbjct: 74  YETV--LSDYEKRAYELVLSFLIALDSFQVDML-KEFGRMITAPEVEMAITAQEFQESVH 130

Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           ++++Q+I+ S+       E++N +RE   +  +          + +  +    +  ++E 
Sbjct: 131 AYSYQFILESVVDPVKADEIYNYWREDERLLER--------NKVIAELYNEFIRKPNEEN 182

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                +   + E ++FY+GFA   +LGR  KM    +Q +YI RDE   +     +  + 
Sbjct: 183 FIKATIGNYILESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELCFIEGTEVLTKRG 242

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
            ++   L   +   +          +E      T P  +V  +  
Sbjct: 243 FVDFRELREDDLVAQ--------YDIETGEISWTKPYAYVERDYE 279



 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
            H+    ++IN ++ ENP L+T E ++        A   EI +         +G+N    
Sbjct: 576 CHVTLFRNIINTLRKENPELFTPEIEKWIVEYFKYAVNEEIKWGQYVTQNQILGINDVLI 635

Query: 293 EQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELK 350
           E+Y++++ N R  QIG +P++   TENP  W+ E   +   + +FF+ +   Y +  ELK
Sbjct: 636 ERYIKYLGNLRITQIGFDPIYPEVTENPLKWIDEFRKINNTKTDFFQAKPQTYSKANELK 695

Query: 351 W 351
           W
Sbjct: 696 W 696


>gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2]
 gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 325

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 118/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ +E+    D        GLTD+E    +    F 
Sbjct: 19  PERYFYTTQCPDINHLRSLSILNRWLESELVFAGDEED---VGGLTDEELNFYRFLFTFL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI----ITSLGLDEGEL 145
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I      + G    E 
Sbjct: 76  SAADDLVTENL-GGLSGLFPQKDILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREY 134

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I  K +W     Q                E + + F+  ++ EG++F   F
Sbjct: 135 VARTIHHPAIRVKVDWLEARVQAC--------------ESVPEKFILMILIEGIFFAASF 180

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K   ++   + 
Sbjct: 181 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLAGHH----KPEPERVYRLF 236

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            EA  +EI +     P     L+A +    E Y++F A+R    I ++PLF        +
Sbjct: 237 REAVEIEIGFIRSQAPADSRILDAAALAAIENYVRFSADRLLALIRMKPLFGAPAPAPSF 296

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++  +K  NFFE R T Y 
Sbjct: 297 PLSLMSTEKHTNFFECRSTAYA 318


>gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort]
 gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort]
          Length = 349

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 18/318 (5%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +   A   +  A  + W+P +  +  D++ W   N LTD E+   K+ L      ++  +
Sbjct: 26  EDEMANNFWELATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQS 82

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPS 154
              +  I  H       Q      F E++H+ ++ +I T+L L++   +       + P 
Sbjct: 83  VEGMSLIAHHEPRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPH 142

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA +   + + L  P+ +T  +           V     E   FY+GF   L L   
Sbjct: 143 LKKKAQYIGYFYEKLEQPNPSTFDR-------YMAKVASAFLESALFYSGFYYPLLLSGQ 195

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             MV        I +DE+ H             E       +       +L      E++
Sbjct: 196 GVMVQSGTTIYKITQDEAYHGVGVGYTAQLDYQELTEEEQSKADALMYELLEVLYENEVS 255

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK 333
           Y+H    K  +        +Y+Q+  NR    +G +  F     NP       +D     
Sbjct: 256 YSHMLYDKLGL---TEDVIRYVQYNFNRALANLGFDDYFNPEPFNPIVNNQTNVDKLSNA 312

Query: 334 NFFETRVTEYQQGAELKW 351
           +FF T+  +Y++    K 
Sbjct: 313 DFFSTKN-DYKRSMNTKD 329


>gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 344

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 19/319 (5%)

Query: 36  PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
           P  Y WA E   + A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 17  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+    
Sbjct: 77  FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           ++   S     +      +     S++             +    +  EG+  +  F  +
Sbjct: 132 WKAFASYKEMRDKLEVMGENRIDASWSE------PLQAACILAQLLTGEGVGLFGAFTVL 185

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q+ R ++ + 
Sbjct: 186 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQEIRYLIEDY 245

Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              E+ Y      KG    L      +Y+ ++   R  +  L    +  ENP PWM  +I
Sbjct: 246 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 305

Query: 328 DLKKEKNFFETRVTEYQQG 346
           +  +  NFFE +VT+Y   
Sbjct: 306 NAARHDNFFEKKVTDYSHS 324


>gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus]
          Length = 213

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  +L  W  
Sbjct: 64  ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW-- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE   +   Q   E VHS  
Sbjct: 122 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEM 180

Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKAN 160
           +  +I +   D  +    FN    +P +  KA+
Sbjct: 181 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKAD 213


>gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4]
 gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2]
 gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4]
 gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus
           4]
 gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4]
 gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4]
          Length = 302

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 110/294 (37%), Gaps = 20/294 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W    + +  D    K    L + +    K    F A +E LV  NI   +     + 
Sbjct: 23  NRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESH 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y   Q   E VH  T+  I+  L   +    N Y E          A+   + L +
Sbjct: 79  DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAE----------AIMADEALQA 128

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  K A    L +  + +++ EG++F + F  I  L     M GI     YI RDE
Sbjct: 129 KISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDE 188

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH      + N +  +      +      + +   A  +E A+  E   +G   ++  +
Sbjct: 189 LLHTRAASLLYNSMTAKA----DRPRATWIQELFRTAVEVETAFI-EARGEGVTLVDVRA 243

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
            +Q+++  A+R    IG  PL+  T  P       +   K+ NFFE   ++Y  
Sbjct: 244 IKQFLEATADRILGDIGQAPLYG-TPPPKDCPLTYMTSIKQTNFFEQESSDYTM 296


>gi|308178758|ref|YP_003918164.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|307746221|emb|CBT77193.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           arilaitensis Re117]
          Length = 341

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 30/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P +VP+ +DL  W+    LT +ER +  R     
Sbjct: 32  NWNRVVDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWE---KLTQEERTLTMRVFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ A    +   +              AF +AVH+ ++  + ++L     E+ + Y
Sbjct: 86  TMLDTVQATVGEICQIQDSQTEHEEAVYTNIAFMQAVHARSYSSVFSTLTSTP-EIDSAY 144

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R          WA+                  D    + +    +    +  Y GF   L
Sbjct: 145 R----------WAIANDMLQERCKKVLTHYYGDDPLKRKVSSTLLSS--LLLYAGFYLPL 192

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  +   A+  + I+RD+++H  +      +          +  ++ +  +L E  
Sbjct: 193 HFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLETQSPATQENMREFTYALLEELY 252

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
            LE+ Y+ E      +         ++++ AN+    +G    F   E   NP    +  
Sbjct: 253 ELELQYSGELYEPLGL---MDDVAVFVRYNANKALMNLGYPARFTPEETNVNPEILAALA 309

Query: 327 IDLKKEKNFFETRVTEYQQG-----AELKWD 352
               +  +FF    + Y  G     ++  WD
Sbjct: 310 PGADENHDFFSGSGSSYIIGKAEDTSDDDWD 340


>gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB]
          Length = 229

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER 
Sbjct: 75  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192

Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQT 168
           D  E    FN    +P I  KA WAL++ Q 
Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQD 223


>gi|144575330|gb|AAZ53597.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 7448]
          Length = 314

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 5   NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 58

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 59  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 118

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                  E      V   +  G   Y GF  
Sbjct: 119 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 163

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 164 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y ++   +  +   A S  ++  + A +    +G +  F   E    P  +  
Sbjct: 224 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 280

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y     
Sbjct: 281 LSARADENHDFFSGNGSSYVMALA 304


>gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
 gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
          Length = 382

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 120/333 (36%), Gaps = 19/333 (5%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +   N+D        + V +   +K+    E      +  W P EV +  D A +     
Sbjct: 7   QNEFNIDQPMFFGDDTGVARYEIVKHEKFEELTTKQLSFFWRPEEVNLTTDKAQFDKLWE 66

Query: 74  LTD-DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
                 + +   NLG+    +S+      + +    S+     +++   F E +HS ++ 
Sbjct: 67  TNRGHLQTIFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYT 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-----------TTGTKDA 181
           +II +L  D  ++F+       I A+A    +    L                T G    
Sbjct: 127 HIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVATPGQLRE 186

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGID 240
            ++ L          E + FY  F    +     K M G  +  Q+I RDE+LH      
Sbjct: 187 VKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLHHQGTRY 246

Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++ Q+         +E     ++++  M  E    E A+A      G   GL      ++
Sbjct: 247 ILQQMNKGIDGTEWREIALDCKEEAEAMFLEVRAQERAWATYVYRNGHPDGLTTDLVHEF 306

Query: 296 MQFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327
           + +        +GL  P+ +   +P PW+++ +
Sbjct: 307 IDYQLVPAMKNVGLNCPIERPKRHPLPWVNKYL 339


>gi|71893573|ref|YP_279019.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae J]
 gi|72080562|ref|YP_287620.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae 7448]
          Length = 339

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 30  NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 84  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                  E      V   +  G   Y GF  
Sbjct: 144 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 189 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y ++   +  +   A S  ++  + A +    +G +  F   E    P  +  
Sbjct: 249 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y     
Sbjct: 306 LSARADENHDFFSGNGSSYVMALA 329


>gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
 gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 23/338 (6%)

Query: 21  DKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D+++              +Y W+   Y     N W P+EV   ++   +   + LTD+E+
Sbjct: 16  DEKIYGGNPTGFVDFNRPRYKWSVNLYDLMNANTWFPSEVNTANEKKHF---DLLTDNEQ 72

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            + K      + ++S      +    R  +N   +  L  Q  +E  HS ++  ++ + G
Sbjct: 73  AIYKLTFAQLSFNDSAQ-EEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            +  E+F++Y        K + AL       +  F         E +    +  V  EG+
Sbjct: 132 -NSDEVFDLY--------KHDAALNRKNQRIANQFARYIDGNSAEEMLLSAMASVNLEGI 182

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQ 258
           +F  GF+ I  LG  +K+ G  +  ++I RDE + HL    ++   I  EN         
Sbjct: 183 YFLLGFSYIYVLG--DKVPGARDMIKFIARDEINTHLPLFANIFKTIYKENK--IPASIV 238

Query: 259 QKSRTMLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            K+  M+ EA  +E+ Y    +     +GL     E+ +   AN R ++IGLEP+F+ T 
Sbjct: 239 DKAYEMIQEAVDIELEYGKYLLENYPIMGLTDELMEKTVYNYANDRLNKIGLEPIFEETP 298

Query: 318 NPF--PWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +    + + + +     NFFE+ V  Y + +    D
Sbjct: 299 QTYLQKLVEKHLKMNDVRSNFFESNVANYAKNSLDLDD 336


>gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus]
 gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus]
          Length = 280

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 25/289 (8%)

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAF 122
           ++ W   + LT  E+  +K  L FFA  + +V  N+V    + +S    E   + + QA 
Sbjct: 1   MSDW---SKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAA 57

Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +H+ T+  +I +L     +     +     PSI   ANW  ++              
Sbjct: 58  NELIHNETYMNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWMDRRI--------- 108

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                 L +  + +   EG+ F   FA I      N++ G+ +  ++I +DE+LH  F  
Sbjct: 109 -----PLPERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFAE 163

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            V   I ++    + +  Q++ + +L  A      + H+ +    V ++A     YM+  
Sbjct: 164 AVYRYI-VDVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNA 222

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           A+     +G E  F    +   +M  +I +  + NFFE  V +Y +G E
Sbjct: 223 ADGLAFSLGYEKFFNSDSS-LDYML-LIGMDNKTNFFEEVVADYAKGLE 269


>gi|144227519|gb|AAZ44308.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae J]
          Length = 353

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 44  NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 98  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                  E      V   +  G   Y GF  
Sbjct: 158 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 202

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 203 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y ++   +  +   A S  ++  + A +    +G +  F   E    P  +  
Sbjct: 263 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y     
Sbjct: 320 LSARADENHDFFSGNGSSYVMALA 343


>gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 358

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 122/336 (36%), Gaps = 23/336 (6%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
            N   D       +  +    Y    +  W P ++ +Q DL LW S   L++D +L   R
Sbjct: 11  ANREYDGANWNEHEDNFTQTFYEQNLSQFWRPEDISLQPDLNLWAS---LSEDVKLAYGR 67

Query: 85  NLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLD 141
           NL      ++   +  +  + R +     + +  L   A  E  VH+ ++  I  +   +
Sbjct: 68  NLLVLTFLDTYQGDIGMPVVSRSIDHKYHQRKSVLNFMAAMENAVHAKSYSNIFMTYMKN 127

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF--------LQDLFV 191
           E   +L+    +  ++       + Y + L   ++     D  +               V
Sbjct: 128 EEIDDLYRWGEQNKNMQNILALIIGYYENLDRLTYRKQYADLGEPVDDFEFDVAQWKAMV 187

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             V  E   FY+GF   L      K++   E    I+RDES+H  +  ++  ++  +   
Sbjct: 188 ASVFLESCLFYSGFYYPLYFYGQGKLMQAGEIINLILRDESIHGLYIGNLAMELYRKFDA 247

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +   T L      E+           +       + ++++ AN+    +G + 
Sbjct: 248 ETQASLYEWLTTYLDAIYEEEVELIEAIYDPVELS---HDVKIFVRYNANKAMMNLGFDA 304

Query: 312 LFKYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
            ++Y E NP   +   ++ + +  + F  +   YQ+
Sbjct: 305 YYEYEEVNPV--VLNGLNTETKTMDNFSMKGNGYQK 338


>gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus]
          Length = 314

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 107/324 (33%), Gaps = 30/324 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              D   L    +            N W P+++ + +D         L+  +R   +   
Sbjct: 12  ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DE 142
            F   +ESLV  NI   + +  SN +   Y   Q   E +H   +  I+         D 
Sbjct: 68  TFLGMAESLVNFNI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                   E  ++  K +W                ++        +  + ++V EG++F 
Sbjct: 127 MTYAKKIVEDATLAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFI 172

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           + F  I        M G+     YI RDE LH      + N +   +             
Sbjct: 173 SSFYSIGLFRLRGVMRGVCLANDYISRDELLHTRAAGLLYNTMISRDES----PSVAYIH 228

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +  EA  +E  +   +  +G   +N    EQ++Q  A+R    I + PLF     P   
Sbjct: 229 GLFREAVEIETLFIR-SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARP-PNAC 286

Query: 323 MSEVIDLKKEKNFFETRVTEYQQG 346
                   K  NFFE   +EY   
Sbjct: 287 PLSYTSA-KSVNFFERDNSEYVTS 309


>gi|308233466|ref|ZP_07664203.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
 gi|328943412|ref|ZP_08240877.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
 gi|327491381|gb|EGF23155.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
          Length = 339

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 117/353 (33%), Gaps = 29/353 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M + + + P           DK       + N++   K    W        N W+P  +P
Sbjct: 1   MQSASNVQPTSQSPVDFAYADKGCNMRAVNWNRIQDEKDLEVWN---RVTQNFWLPENIP 57

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +DL  W   N L    + +I R        +++ A    +A  RH      +      
Sbjct: 58  VSNDLPSW---NELDSSWQQLIIRTFTGLTLLDTVQATVGDVAQIRHALTDIEQANYANF 114

Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF  AVH+ ++  + ++L   E   E         ++  +A   + Y          TG+
Sbjct: 115 AFMVAVHARSYGTVFSTLCSSEQIDEAQAWVVNNDALQKRAKALIPYY---------TGS 165

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                +    L        G   Y GF     L   +K+   ++  + I+RD+ +H  + 
Sbjct: 166 DPLKSKVAAALMP------GFLLYGGFYLPFYLSARSKLPNTSDMIRLILRDKVIHNYYS 219

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                Q   +      +  +     ++++   LE AY  +          A    ++  +
Sbjct: 220 GYKFQQKVRKLTSDEQQTVKDFVFDLMYQLIDLEKAYLQDLYKD---FDLADDAIRFSLY 276

Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            A +    +G +  F   E   +P  +        +  +FF    + Y  G  
Sbjct: 277 NAGKFLQNLGYDSPFSEQETYISPEVFAQLSARADENHDFFSGSGSSYVIGTS 329


>gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus]
 gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1]
 gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1]
 gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1]
          Length = 355

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 23/314 (7%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N W+ +E+   DD A     + LT  E    +    F ++++ LV  N
Sbjct: 62  QEMNELRSLSIVNRWLESELVFLDDAAD---VDKLTPSELDFYRFIFTFLSAADDLVNCN 118

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
           +   +       + + Y + Q   EAVHS  +  I   L  ++             TA+A
Sbjct: 119 L-GNLMGLFEEKDIQHYYVEQESIEAVHSRVYSIIQLILFKNDA------------TARA 165

Query: 160 NWALQYTQ--TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
            +  +  +  ++ S       +  + E + + ++  ++ EG++F   FA I  +   N  
Sbjct: 166 EYVKKAIRETSIRSKVKWISERVEECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIF 225

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
           V   +    I RDE++H      + N    ++   + K    +   +  EA  LE  +  
Sbjct: 226 VVTCQANTMISRDETIHTKASCVIYN----KHLQKYKKPSTCRIYKLFSEAVKLECEFLR 281

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337
              P     ++  +   Y++F A+R    IGL PLF        +    +   ++ NFFE
Sbjct: 282 ARAPSDSAIIDTEAICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMATSQQTNFFE 341

Query: 338 TRVTEYQQGAELKW 351
            R T Y  G+ L  
Sbjct: 342 RRNTTYA-GSVLND 354


>gi|54020059|ref|YP_115670.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae 232]
 gi|53987232|gb|AAV27433.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 232]
          Length = 353

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 44  NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 98  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                  E      V   +  G   Y GF  
Sbjct: 158 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 202

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 203 PFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  Y ++   +  +   A S  ++  + A +    +G +  F   E    P  +  
Sbjct: 263 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y     
Sbjct: 320 LSARADENHDFFSGNGSSYVMALA 343


>gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma australiense]
 gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma
           australiense]
          Length = 344

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 125/329 (37%), Gaps = 21/329 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ NQL   +Y      Y    +  W P ++ +Q DLA W   N L+D+E+    RNL  
Sbjct: 12  ANWNQLED-EYTHF--FYEQNLSQFWRPEDISLQGDLAAW---NHLSDEEKTTYTRNLLV 65

Query: 89  FASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG-- 143
               ++   +  +  I   +  +  + +  L      E  VH+ ++  I TS   +E   
Sbjct: 66  LTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDIN 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSF------TTGTKDADQEFLQDLFVFYVVFE 197
           +LF    +  ++        +  + L    +      +  ++   Q+         V  E
Sbjct: 126 QLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLE 185

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   L      K++   E    I+RDES+H  +   +  ++         KE 
Sbjct: 186 TWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDDTKKEL 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +      +      ++    E   K  +       ++++++ AN+    +G +  F   E
Sbjct: 246 KTWLDATMKTLYKEQMELVKEVYSK--LSYLEEDVQKFVRYNANKALMNLGFDAFFPE-E 302

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           N  P +   ++ + +  + F  +   YQ+
Sbjct: 303 NVNPVVLNGLNTETKTMDNFSMKGNGYQK 331


>gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
          Length = 333

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERNVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+                  E      V   +   +  Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
              LE+ Y+ E      +         ++++ AN+    +G    F   E         +
Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
                ++  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2]
          Length = 337

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 31  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFL 87

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 88  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 146

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I  K +W                 +  + + + + F+  ++ EG++F   F
Sbjct: 147 VARTINHPAIRVKVDWLE--------------ARVRECDSVPEKFILMILIEGVFFAASF 192

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N    ++     K    +   + 
Sbjct: 193 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGDH----AKPEAARVYRLF 248

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            EA  +EI +     P     L+  +    E Y++F A+R    I ++PL+        +
Sbjct: 249 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASF 308

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 309 PLSLMSTDKHTNFFECRSTSYA 330


>gi|330861133|emb|CBX71396.1| ribonucleoside-diphosphate reductase 2 subunit beta [Yersinia
           enterocolitica W22703]
          Length = 239

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 28/254 (11%)

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYT 166
           S P         +F EAVH+ ++  I ++L +  D  E +    E   +  KA+  LQ+ 
Sbjct: 3   SPPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHY 62

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                          + + L+      V  E   FY+GF   +      ++   A+  + 
Sbjct: 63  N--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMYWSSRARLTNTADLIRL 107

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I+RDE++H  +      +   +  +   +E +  +  +L +    EI Y         VG
Sbjct: 108 IIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYDNEIHYTESLYDG--VG 165

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343
                 ++++ + AN+    +G E LF  ++   NP    +   +  +  +FF    + Y
Sbjct: 166 WT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSY 224

Query: 344 QQGAEL-----KWD 352
             G  +      WD
Sbjct: 225 VIGKAVNTEDEDWD 238


>gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
 gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
          Length = 333

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+                  E      V   +   +  Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
              LE+ Y+ E      +         ++++ AN+    +G    F   E         +
Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
                ++  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
          Length = 333

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+                  E      V   +   +  Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPERV-AEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
              LE+ Y+ E      +         ++++ AN+    +G    F   E         +
Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
                ++  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
           ANKA]
 gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium
           berghei]
          Length = 158

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 9/153 (5%)

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P      
Sbjct: 1   EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE----- 55

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F ++
Sbjct: 56  --EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 113 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 144


>gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 314

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 104/312 (33%), Gaps = 29/312 (9%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +            N W P+++ + +D         L+  +R   +    F   +ESLV  
Sbjct: 23  HPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLFTFLGMAESLVNF 79

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DEGELFNMYREVPS 154
           NI   + +  SN +   Y   Q   E +H   +  I+         D         E  +
Sbjct: 80  NI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDAT 138

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K +W                ++        +  + ++V EG++F + F  I      
Sbjct: 139 LAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFISSFYSIGLFRLR 184

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             M G+     YI RDE LH      + N +   +              +  EA  +E  
Sbjct: 185 GIMRGVCLANDYISRDELLHTRAASLLYNTMISRDES----PSVAYIHGLFREAVEIETL 240

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +   +  +    +N    EQ++Q  A+R    I + PLF     P           K  N
Sbjct: 241 FIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARP-PNACPLSYTSA-KSVN 297

Query: 335 FFETRVTEYQQG 346
           FFE   +EY   
Sbjct: 298 FFERDNSEYVTS 309


>gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis]
          Length = 849

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 115/331 (34%), Gaps = 69/331 (20%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP-----------------------T 57
            K +L+   D   + PLK    W +Y  A  +   P                        
Sbjct: 556 PKPLLDENPDRYCMFPLKEDRVWSQYKKAEAS--RPSGQAPNDPLCMAHTTFWTTFWTAE 613

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           +V    D   W+ +  L   ER  +   L + A+S+ L+ +N+V      +   E R + 
Sbjct: 614 DVDFSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFY 671

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQTLSSPS 173
             Q F++ VH+     I+ +L   + E            P+  AKA W  ++    ++ +
Sbjct: 672 AFQLFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINRQATAA 731

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +  L                                        I RDE +
Sbjct: 732 AALPPLLLPRGLLPG-------------------------------TGHATDLISRDEGV 760

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H+     + + ++ +           +++ ++ EA   E A+    +P    GL A + E
Sbjct: 761 HVESAGVMYSLLRSKLTD-------SQAQGIVGEAVEAERAFVCGQLPLEATGLEAGAME 813

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           +Y+Q++ +R    +G  PL++   NP PW+ 
Sbjct: 814 EYLQYVGDRLLGALGHAPLYRVAANPLPWLE 844


>gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma mali]
 gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus
           Phytoplasma mali]
          Length = 348

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 116/326 (35%), Gaps = 21/326 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
                +  +    Y    +  W P ++ +Q DL  WK    L+  E+ +  +NL      
Sbjct: 12  NWNQFEDPYTHFFYEQNLSQFWRPEDISLQGDLQTWKD---LSKFEKNVYSKNLLILTFL 68

Query: 93  ESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-VHSHTFQYIITSL--GLDEGELFN 147
           ++   ++ +  I       E   +  L      E  VH+ ++  I  +L    +  +LF 
Sbjct: 69  DTYQGDSGMFIISSSFKKEEHQKKATLNFMGAMENAVHAKSYSNIFMTLLNSKEIDDLFV 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMWF 201
                  +       +   + L    F     D +      +++     V  V  E   F
Sbjct: 129 WGGNQKYLQNIIGKIIDVYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWLF 188

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L      K++   E    I+RDES+H  +   +   I      L   E  +  
Sbjct: 189 YSGFYYPLFFYSQGKLMQSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKWM 248

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L      +IA       + ++        +++++ AN+    +G  P F+  E NP 
Sbjct: 249 YDLLKYFYQEQIALVKSVYNEHYLI---NDVNKFVRYNANKALMNLGFNPYFEKEEVNPV 305

Query: 321 PWMSEVIDLKKEK-NFFETRVTEYQQ 345
             +   ++ + +  + F  +   YQ+
Sbjct: 306 --ILNGLNTETKTMDNFSMKGNGYQK 329


>gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2]
 gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2]
 gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
          Length = 337

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 31  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFL 87

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 88  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 146

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I  K +W                 +  + + + + F+  ++ EG++F   F
Sbjct: 147 VARTINHPAIRVKVDWLE--------------ARVRECDSIPEKFILMILIEGVFFAASF 192

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 193 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPEAARVYRLF 248

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            EA  +EI +     P     L+  +    E Y++F A+R    I ++PL+        +
Sbjct: 249 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASF 308

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 309 PLSLMSTDKHTNFFECRSTSYA 330


>gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2]
          Length = 313

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ +E+    D       + L+  E    +    F 
Sbjct: 7   PERYFYTSECPDINRLRSLSILNRWLESELVFAGDEED---VDRLSPGELDFYRFLFTFL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV   +   +       +   Y + Q   E VHS  +  I   L  ++     +Y
Sbjct: 64  SAADDLVTEEL-GRLSGLFYQKDILHYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIY 122

Query: 150 RE----VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  D   + + F+  ++ EG++F   F
Sbjct: 123 VARTVGHPAIHAKVDWLE--------------ARVRDCPSVPEKFILMILIEGIFFAASF 168

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L  +N +    +    I RDE++H      + N     +P    K    + R + 
Sbjct: 169 AAIAFLRTSNLLKVTCQSNDLISRDEAVHTTASCCIYNNYIGAHP----KPPPTRVRQLF 224

Query: 266 HEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            EA  +EIA+    MP+    L+     S E Y++F A+R    IG +PLF        +
Sbjct: 225 LEAVDIEIAFIRAKMPRDGQVLSESAVASIENYVRFSADRLLCLIGDQPLFNAPPPDANF 284

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 285 PLRLMSTDKHTNFFECRSTAYA 306


>gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                 +  + +   EG++F   F  I  L +   M G+    + I R E LH +F   +
Sbjct: 94  SSTLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLL 153

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + ++ + P        QK   ++HEA  +E  +  E +P   +G+ A     Y++F+ +
Sbjct: 154 YSLLQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVD 206

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           R    +G E  +   ENPF WM E I L+   NFF+ R+ +YQ+ + + 
Sbjct: 207 RLLVALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 253


>gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 304

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 104/312 (33%), Gaps = 29/312 (9%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +            N W P+++ + +D         L+  +R   +    F   +ESLV  
Sbjct: 13  HPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLFTFLGMAESLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DEGELFNMYREVPS 154
           NI   + +  SN +   Y   Q   E +H   +  I+         D         E  +
Sbjct: 70  NI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDAT 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K +W                ++        +  + ++V EG++F + F  I      
Sbjct: 129 LAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFISSFYSIGLFRLR 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             M G+     YI RDE LH      + N +   +              +  EA  +E  
Sbjct: 175 GIMRGVCLANDYISRDELLHTRAASLLYNTMISRDES----PSVAYIHGLFREAVEIETL 230

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +   +  +    +N    EQ++Q  A+R    I + PLF     P           K  N
Sbjct: 231 FIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARP-PNACPLSYTSA-KSVN 287

Query: 335 FFETRVTEYQQG 346
           FFE   +EY   
Sbjct: 288 FFERDNSEYVTS 299


>gi|311993498|ref|YP_004010363.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
 gi|295917455|gb|ADG60126.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
          Length = 379

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 123/332 (37%), Gaps = 21/332 (6%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           + + N+D        + V +   +K+    E      +  W P EV +  D + +   + 
Sbjct: 7   QAKFNIDQPMFFGPDTGVARYEIVKHQKFEELTTKQLSFFWRPEEVNLTTDKSQF---DK 63

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L    ++    NLG+    +S+      + +    S+     +++   F E +HS ++ +
Sbjct: 64  LWAPYQIQFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYTH 123

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--------SSPSFTTGTKDADQE- 184
           II +L  D  ++F+       I A+A    +    L        +       T +  +E 
Sbjct: 124 IIRNLFSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVATPEQLREV 183

Query: 185 --FLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDV 241
              L          E + FY  F    +     K M G  +  Q+I RDE+LH      +
Sbjct: 184 KKALYMCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLHHQGTRYI 243

Query: 242 INQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYM 296
           + Q+         +    E + ++  +  E    E A+A      G   GL       ++
Sbjct: 244 LQQMNKGIDGTEWREIALECKAEAEELFIEVRNQERAWASYVYRDGCPPGLTVELVHDFI 303

Query: 297 QFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327
            +      + +GL  P+ +   +P PW+++ +
Sbjct: 304 DYQLVPAMNNVGLTCPVQRPKRHPLPWVNKYL 335


>gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 34  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333


>gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 34  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333


>gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1]
 gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 34  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333


>gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
 gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit; Flags: Precursor
 gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1]
          Length = 340

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 34  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333


>gi|71894414|ref|YP_278522.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           synoviae 53]
 gi|71851202|gb|AAZ43811.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           synoviae 53]
          Length = 339

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 110/324 (33%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W   N +    + ++ R     
Sbjct: 30  NWNFVNDPKDLEVWN---RVTQNFWLPEKIPVSNDLKSW---NEMDKSWQELLVRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ A    +A   +      +      AF   VH+ ++  I ++L    D  +   
Sbjct: 84  TLLDTIQATLGDIAQIPNSLTDHEQVIYANFAFMVGVHARSYGTIFSTLSNSDDIEKAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A + + Y                 ++ L+       +  G   Y GF  
Sbjct: 144 WVINNEKLQARAKFLVPYY--------------TSKDPLKSKI-AAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ LH  +      Q   + P     E+++ +  +++E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVLHNYYSGYKYRQKVEKLPKEKQAEYKEFTFKIMYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  +  E      +   A     +  + A +     G E  F   E   +P  +  
Sbjct: 249 LIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
                 +  +FF    + Y  G  
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVS 329


>gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 361

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 122/309 (39%), Gaps = 22/309 (7%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E   +   + +L        L+P+K+   ++ Y       W   E+    D+  W  K  
Sbjct: 32  EVEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDIINWGKKA- 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            +D ++ +IK++L F  SS  L +  +   I   +  PE + +   +   E +H   +  
Sbjct: 91  -SDHDKSIIKKSLAFLCSS-VLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSL 148

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            I  L  +  E+  M+++V +    A +  +        SF     D +     +  V +
Sbjct: 149 AIDQLVHNTDEIKKMFKDVDN----AKFIER------KKSFAERWFDKESSLFAEKLVAF 198

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              E ++    F  I+SL + + + G+    + I++D  +H +F + + +++K       
Sbjct: 199 SSIEAIFSLVSFFSIMSLEKKDIIPGLISGIKLILKDHIVHCDFQMSIYSELKK------ 252

Query: 254 TKEFQQKSRTMLHEATLLEIA-YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
            +        ++ EA  +E+     +   K          +  ++++ +R     G +  
Sbjct: 253 -RLDPGIIERIVTEAVEIELETLEDDYFNKQLDKETKADIKNVIEYVGDRVLMGFGNQKH 311

Query: 313 FKYTENPFP 321
           F ++ NP+ 
Sbjct: 312 F-HSANPYD 319


>gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500]
          Length = 1292

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 26/227 (11%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W+    L D+ER +I   LGFF S   ++  NI+      +  PE R +   Q
Sbjct: 60  LLNDVRDWQC--KLDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117

Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E + S  +  +I +   D  E    FN    +P +  K  W L+             
Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMN---------- 167

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               + + L +  + +   E + +   F  IL   + + M  ++E Y +I+ +E  H  F
Sbjct: 168 ----NSKSLAERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           G  + ++       L  K   +   +++ +A   E            
Sbjct: 224 GRLLYSK-------LINKLDTEMIESIIRDAVDCEKQIMESETGDSI 263


>gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
 gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
          Length = 305

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 111/306 (36%), Gaps = 20/306 (6%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +   +E       N W P ++ +  D+   K  + +++ +    K    F   +E+LV  
Sbjct: 13  HPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLGMAETLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           NI   +       + + Y   Q   E VH   +  I+  L  +          + +    
Sbjct: 70  NI-DELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKN---------NLAATWEF 119

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A   L+         +        +   + + +FY + EG++F + F  I  L     M 
Sbjct: 120 AEAVLKDEALQKKLEWLESKIKMAKTKAEKVLIFY-LIEGVFFISSFYCIGLLRVKGVMP 178

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+     YI RDE LH      + N +  +      +   +   ++  EA  +E A+  E
Sbjct: 179 GVCMANDYISRDELLHTRAAALLYNTMIPKE----ERPSSEWVVSLFKEAVEIECAFI-E 233

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
              K    ++      +++  A+R  + I L   +K ++ P           K  +FFE 
Sbjct: 234 AKTKQVTFVSMDDIRAFLEATADRLLNSIELPRYYK-SDPPQSCPLTYTGCIKNVSFFER 292

Query: 339 RVTEYQ 344
             TEY 
Sbjct: 293 ESTEYS 298


>gi|26553540|ref|NP_757474.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           penetrans HF-2]
 gi|26453546|dbj|BAC43878.1| ribonucleotide diphosphate reductase subunit beta [Mycoplasma
           penetrans HF-2]
          Length = 339

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 110/328 (33%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++ + +DL  W   N L  + + ++ R     
Sbjct: 30  NWNFINDDKDLEVWN---RITQNFWLPEKIAISNDLPSW---NKLDSNWQELVVRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +S+ A    +A  ++      +      AF   VH+ ++  I ++    +      +
Sbjct: 84  TLLDSIQATIGDVAQVKNSLTDHEQVIYTNFAFMVGVHARSYGSIFSTFCSSDQINSAHD 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y           G      +    +        G   Y GF  
Sbjct: 144 WVVNCESLQKRAQVLIPYY---------IGDDPLKSKVAAAMMP------GFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              LG  N +    +  + I+RD+ +H  +      +   + P     E ++    +L++
Sbjct: 189 PFYLGAKNLLPNTLDIIRLILRDKVIHNYYSGYKYQKKVAKLPPEKQAEMKKFVFDLLYQ 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE  + +E      +   A    ++  + A +    +G +  F   E    P  ++ 
Sbjct: 249 VIDLEKEFLNELYAGFNIADQA---IKFSVYNAGKFLQNLGYDSPFTPEETEIKPEIFVQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
                 +  +FF    + Y  G   + D
Sbjct: 306 LSARADENHDFFSGSGSSYIMGNVEETD 333


>gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
 gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
          Length = 378

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 118/294 (40%), Gaps = 20/294 (6%)

Query: 38  KYGWAWEKYL-----SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +Y W     L           W P E+ M   +   KS   L +  +  IK NL F    
Sbjct: 27  RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLM 83

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +S     +   +   +++      L  QA+ E +HS ++ +II S+  +  ++F+ Y E 
Sbjct: 84  DSGQNRGLDNILIPLVTSSGLEGCLKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEYCEY 143

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL--- 209
           P I  + N  +   ++L          D ++  + +  +     EG+ FY  F       
Sbjct: 144 PEIKTRINDEIDTYESLEGSLEEN---DENKLKILEACLRIQFLEGVKFYVSFLTTYMIN 200

Query: 210 -SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTM 264
                 NK+  + +  + I  DE +HL     ++  ++ E      HL+     +K+R +
Sbjct: 201 KYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSEQHQGFSHLFDDSLSRKARKI 260

Query: 265 LHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
             +    E+ +A   +  G +  L   + + +++F  + R  + G +P++   +
Sbjct: 261 AKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDRLKKCGFQPIWNAPK 314


>gi|257069911|ref|YP_003156166.1| ribonucleotide-diphosphate reductase subunit beta [Brachybacterium
           faecium DSM 4810]
 gi|256560729|gb|ACU86576.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
          Length = 341

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 112/334 (33%), Gaps = 36/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +DL  W+    L + +R +  R     
Sbjct: 32  NWNRVQDEKDLEVWN---RLTANFWLPEKVPLSNDLQAWQ---RLPEQDRTLTMRVFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +   +              AF ++VH+ ++  + ++L         + 
Sbjct: 86  TMLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLTSTPEIDSAYR 145

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    LQ+            +       L               Y GF  
Sbjct: 146 WAVNNDLLQERCKKVLQHYYGADPLKRKVSSTLLSSLLL---------------YAGFYL 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +          +E ++ +  +L E
Sbjct: 191 PLHFSVRATLTNTADMIRLILRDKAVHGYYSGYKYQRGLAAATADKQEEMREFTVALLEE 250

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323
              LE+ Y+ E   P G           ++++ AN+    +G    F+  E   +P    
Sbjct: 251 LYALELEYSGELYEPLGL----MDDVAGFVRYNANKALMNLGYPARFEAHETVVSPEILA 306

Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
           +      +  +FF    + Y  G     ++  WD
Sbjct: 307 ALAPGSDENHDFFSGSGSSYVIGKAEHTSDDDWD 340


>gi|227504052|ref|ZP_03934101.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199382|gb|EEI79430.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 304

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 113/310 (36%), Gaps = 26/310 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +DL+ W+    +T  ER +  R      + +++ A    + 
Sbjct: 8   EVWNRLTANFWLPEKVPLSNDLSAWQ---KMTPSERNLTMRVFTGLTTLDTVQATVGEIC 64

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161
             +       +      AF ++VH+ ++  + ++L    +  E +        + A+A  
Sbjct: 65  QIQDARTEHEQAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +              D  +  +    +  ++      Y GF   L       +   A
Sbjct: 125 VLTHYY----------GPDPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTA 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +    +     +E +  + ++L E   LE+ Y+ E   
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESSSPQRQQEMKNFTISLLEELYSLELEYSGELYE 229

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              +         ++++ AN+    +G    F   E   NP    +      +  +FF  
Sbjct: 230 PLGL---MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSG 286

Query: 339 RVTEYQQGAE 348
             + Y  G  
Sbjct: 287 SGSSYVIGTA 296


>gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma
           laidlawii PG-8A]
 gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma
           laidlawii PG-8A]
          Length = 369

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 138/355 (38%), Gaps = 27/355 (7%)

Query: 7   LSPIQAGEKRVNVDD-KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           +      + ++ +D  KR+    ++ N+    +  +    Y    +  W P +V +Q DL
Sbjct: 1   MDKKATKQSKIKLDPIKRVKYEGANWNEP---EDDYTQHFYEQNLSQFWRPEDVSLQPDL 57

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP--ECRQYLLRQAFE 123
            +W   + L ++ +    +NL      ++   +  +  + R L +   + +  L      
Sbjct: 58  NVW---SVLPENIQDAYAKNLLVLTFLDTHQGDIGMPVVSRSLDDHFHQRKAVLNFMGAM 114

Query: 124 EA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E  VH+ ++  I  +   ++   ELF+   +  ++    +  + Y + L   ++    + 
Sbjct: 115 ENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNIMSLIVGYYKELDRYNYLKQFES 174

Query: 181 ADQEFLQ--------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
            D  + +           V  V  E   FY+GF   L      K++   E    I+RDES
Sbjct: 175 NDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLFFYGQGKLMQAGEIINLILRDES 234

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           +H  +   +  ++     +   ++  Q     L E    E     E++       +    
Sbjct: 235 IHGLYVGRLAQEVFETFSNELQEQLTQWVHDFLLELY-HEQNELVESIYDAVELSH--DV 291

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           + ++++ AN+    +G +P F+  + NP   +   ++ + +  + F  +   YQ+
Sbjct: 292 KIFVRYNANKALMNLGFDPYFEPEDVNPV--VLNGLNTETKTMDNFSMKGNGYQK 344


>gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1]
          Length = 340

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 34  PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E  HS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333


>gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K   ++   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1]
 gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K   ++   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3]
 gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3]
          Length = 302

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+   + +  D    +    L   +    K    F A +E LV  NI   +     + 
Sbjct: 23  NRWVAVHISLVRDC---EGVRELNPRDLEFYKFLFTFLAMAEKLVNFNI-DELLPQFCSH 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y   Q   E +H  T+  I+  L   + +    Y         A+  +      + 
Sbjct: 79  DIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVAQY---------ADEVIADKALQAK 129

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
             +  G  ++     + + +F ++ EG++F + F  I  L     M GI     YI RDE
Sbjct: 130 ICWLNGMVNSAVTKAEKILIF-LLIEGIFFISSFYSIAVLRTRGIMPGICLANNYISRDE 188

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH      + N +  ++     +   +    +   A  +E  +  E   +G   ++   
Sbjct: 189 LLHTTAATLLYNSMTSKS----ERPQSEWIEALFRRAVDVEYNFI-EARGRGVTNIDLKG 243

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              +++  A+R    +G+  ++     P       +   K  NFFE   +EY  
Sbjct: 244 IRDFLEATADRILGDLGMTAIYDTRPPP-DCPLTYMTSVKHTNFFEQENSEYTM 296


>gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1]
 gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
 gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
          Length = 377

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 118/312 (37%), Gaps = 22/312 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+       + A +  W P E+ +  D + +K    L   ++     NL + A  +++  
Sbjct: 32  KHPTIENLTVQALSFFWRPEEINLTTDSSQFK---KLHPRDQRTFTLNLLYQAIMDTVQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +     +    S+     ++    F E +HS ++ +II +L  +  E+F+       I A
Sbjct: 89  SAPSEILGPICSDIGLDTWIQTWTFFETIHSRSYTHIIRNLYNNPTEIFDSVVLDDQIMA 148

Query: 158 KANWALQYTQTLS--------SPSFTTGTKDA---DQEFLQDLFVFYVVFEGMWFYTGFA 206
           +A    +Y   L                T++     ++            E + F+  F 
Sbjct: 149 RAASICKYYDELEIKWTLYSADKIRGIATEEQLYELKKAFYLCLHTINALEAIRFFVSFI 208

Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKS 261
              +     K M G ++   +I RDE+LH      +I +++   E P      +E ++++
Sbjct: 209 NTFNFFETQKVMEGNSKIMTFIARDENLHHQGTRYMIKRLQSGEEGPEWIKIAEECREEA 268

Query: 262 RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE--PLFKYTEN 318
             +       E  +       G   GL+      Y+ +    R +++GL+   +     N
Sbjct: 269 TNIFLATNEQEKEWCKYVYQSGAPQGLSVGLVSDYIDYATVPRMNELGLDSSSIVAPKRN 328

Query: 319 PFPWMSEVIDLK 330
           PFPW+++ +   
Sbjct: 329 PFPWLTKFLKSN 340


>gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1]
 gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1]
 gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1]
 gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1]
 gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1]
 gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1]
 gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1]
 gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1]
 gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1]
 gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1]
 gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1]
 gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1]
 gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1]
 gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1]
 gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1]
 gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1]
 gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1]
 gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1]
 gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1]
 gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1]
 gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1]
 gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1]
 gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1]
 gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1]
 gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1]
 gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1]
 gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1]
 gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1]
 gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1]
 gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1]
 gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1]
 gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1]
 gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1]
 gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1]
 gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1]
 gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1]
 gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1]
 gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1]
 gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1]
 gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1]
 gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1]
 gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1]
 gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1]
 gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1]
 gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1]
 gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1]
 gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1]
 gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1]
 gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1]
 gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1]
 gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1]
 gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1]
 gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1]
 gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1]
 gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1]
 gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1]
 gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1]
 gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1]
 gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1]
 gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1]
 gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1]
 gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1]
 gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1]
 gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1]
 gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1]
 gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1]
 gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1]
 gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1]
 gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1]
 gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1]
 gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1]
 gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1]
 gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1]
 gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1]
 gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1]
 gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1]
 gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1]
 gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1]
 gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1]
 gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1]
 gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1]
 gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1]
 gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1]
 gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1]
 gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1]
 gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1]
 gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1]
 gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1]
 gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1]
 gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1]
 gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1]
 gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1]
 gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1]
 gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1]
 gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1]
 gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1]
 gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1]
 gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1]
 gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1]
 gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1]
 gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1]
 gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1]
 gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1]
 gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1]
 gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1]
 gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1]
 gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1]
 gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1]
 gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1]
 gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1]
 gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1]
 gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1]
 gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1]
 gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1]
 gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1]
 gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1]
 gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1]
 gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1]
 gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1]
 gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1]
 gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1]
 gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1]
 gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1]
 gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1]
 gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1]
 gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1]
 gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1]
 gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1]
 gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1]
 gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1]
 gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1]
 gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1]
 gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1]
 gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1]
 gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1]
 gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1]
 gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1]
 gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1]
 gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1]
 gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1]
 gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1]
 gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1]
 gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1]
 gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1]
 gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1]
 gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1]
 gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1]
 gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1]
 gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1]
 gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1]
 gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1]
 gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1]
 gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1]
 gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1]
 gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1]
 gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1]
 gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1]
 gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1]
 gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1]
 gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1]
 gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1]
 gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1]
 gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1]
 gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1]
 gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1]
 gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1]
 gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1]
 gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1]
 gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1]
 gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1]
 gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1]
 gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1]
 gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1]
 gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1]
 gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1]
 gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1]
 gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1]
 gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1]
 gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1]
 gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1]
 gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1]
 gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1]
 gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1]
 gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1]
 gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1]
 gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1]
 gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1]
 gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1]
 gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1]
 gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1]
 gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1]
 gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSIINRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +  ++ + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECAYVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1]
 gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1]
 gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1]
 gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1]
 gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLSGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4]
 gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4]
 gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4]
 gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4]
          Length = 305

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 111/311 (35%), Gaps = 28/311 (9%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +    E       N W P+++P+  D+A       L + +R   K    F   +E LV  
Sbjct: 13  HAGFLELTTETWKNMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPS 154
           NI   + +  +  +   Y   Q   E +H   +  I+      +     E        P+
Sbjct: 70  NI-EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPT 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK +W                T+  + +   +  + +++ EG++F + F  I      
Sbjct: 129 LKAKLDWL--------------HTRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVR 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             + GI     YI +DE LH      + N +         +      + +  EA  +E +
Sbjct: 175 GMLNGICLANDYISKDELLHTRAAAVLYNSLIP----AKERPDAAWIKRLFQEAVEVEYS 230

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +      K    +     ++++Q   +R    IG+EP++  +  P           K  N
Sbjct: 231 FIA-AKSKNVTLVVPGEIKKFLQATCDRILQSIGVEPIYG-SHAPVTCPLSYNGCIKSVN 288

Query: 335 FFETRVTEYQQ 345
           FFE   T+Y  
Sbjct: 289 FFEREGTDYST 299


>gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1]
 gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N +  +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTEN-MGGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 196

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 2   ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
             N  + P+ AG + +         N +++ +         L P++Y   W KY    + 
Sbjct: 39  TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 99  IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            R +   Q   E +HS T+  ++ +   D  E   +
Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRL 191


>gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +  I +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVICQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I  K +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRTKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE+    D       + L++ E    +    F 
Sbjct: 1   PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 58  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I AK +W                 +  +   + + F+  ++ EG++F   F
Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      +       +     K    +   + 
Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYTNYLGGH----AKPPPDRVYGLF 218

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            +A  +EI +     P     L+  +    E Y++F A+R    I ++PLF        +
Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278

Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344
              ++   K  NFFE R T Y 
Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300


>gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus]
          Length = 305

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 28/311 (9%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +    E       N W P+++P+  D+A       L   +R   K    F   +E LV  
Sbjct: 13  HAGFLELTTETWKNRWFPSQIPLSSDVA---GIAQLNATDREFYKFLFVFLGLAEKLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPS 154
           NI   + +  +  +   Y   Q   E +H   +  I+      +     E        P+
Sbjct: 70  NI-EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPT 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           + AK +W                T+  + +   +  + +++ EG++F + F  I      
Sbjct: 129 LKAKLDWL--------------HTRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVR 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             + GI     YI +DE LH      + N +         +      + +  EA  +E A
Sbjct: 175 GMLNGICLANDYISKDELLHTRAAAVLYNTLIP----AKERPDPAWIKRLFQEAVEVEYA 230

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +      K    +     ++++Q   +R    IG+  L+  +  P           K  N
Sbjct: 231 FIA-AKSKNVTLVVPGEIKRFLQATCDRILQSIGVGALYG-SHAPVTCPLSYNGCIKSVN 288

Query: 335 FFETRVTEYQQ 345
           FFE   T+Y  
Sbjct: 289 FFEREGTDYST 299


>gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 147

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/146 (45%), Positives = 99/146 (67%)

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            +L+LGR NK+ G+++Q +Y +RDESLH+NFG  +IN +K + P +WTK+F++++   + 
Sbjct: 1   MLLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIK 60

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  LEI YAH+ +P+G +GLNA     YM +I NRR   IGL+  F+   NPFPW+SEV
Sbjct: 61  KAVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEV 120

Query: 327 IDLKKEKNFFETRVTEYQQGAELKWD 352
           +D     NFFE +V +YQ    L+ D
Sbjct: 121 VDTGAMTNFFERKVKDYQNSGVLEDD 146


>gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8]
 gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M]
 gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8]
 gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8]
 gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8]
 gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8]
          Length = 305

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 107/307 (34%), Gaps = 20/307 (6%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +            N W P+++P+  D++     + L+D ++   +    F   +E LV  
Sbjct: 13  HDGFLALTRETWQNRWFPSQIPLHLDVSH---VHQLSDADKDFYRFLFTFLGMAERLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           NI   +  + ++ +   Y   Q   E +H   +  I+     +       Y         
Sbjct: 70  NI-EDLVTNFNSHDVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYA-------- 120

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A   L     L        ++           + +++ EG++F + F  I        M 
Sbjct: 121 AKIILD--PALCEKLEWLHSRVRKATTKAQKILMFLIVEGIYFISSFYSISLCRVRGIMP 178

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+     YI RDE LH      + N +      +  K    + + +  EA  +EI +   
Sbjct: 179 GVCLANDYISRDELLHTKAASMLYNTMV----EIQEKPSHAEVQALFREAVNIEIRFIQ- 233

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
               G   +N     ++++  A+R    I + P+F  T  P           K  NFFE 
Sbjct: 234 AKAAGVTLVNVVDIRRFLEATADRILRDIFVPPIFG-TPPPEACPLSYTGSFKAVNFFER 292

Query: 339 RVTEYQQ 345
             ++Y  
Sbjct: 293 DNSDYTT 299


>gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-064]
          Length = 229

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 14/214 (6%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+      
Sbjct: 28  GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143
           +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++ 
Sbjct: 85  IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F + R  P+I  +    +       +        +   E L    +   + EG+ FY+
Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
           GFA   +L R NKM G  +   +I RDE  H  F
Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKF 229


>gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain
           G]
          Length = 342

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 119/325 (36%), Gaps = 36/325 (11%)

Query: 36  PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           P +Y               +  N W+ TE  +       +  + L++ E    +    F 
Sbjct: 31  PERYFYTSQCPDINHLRSLSILNRWLETETELVFVGDEEEDVSKLSEGELGFYRFLFAFL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           ++++ LV  N+   +       +   Y + Q   E VHS  +  I   L  +  +    Y
Sbjct: 91  SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 149

Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                  P+I  K +W                 +  + + + + F+  ++ EG++F   F
Sbjct: 150 VARTITHPAIRVKVDWLE--------------ARVRECDSIPEKFILMILIEGVFFAASF 195

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  L   N +    +    I RDE++H      + N     +     K    +   + 
Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPEAARVYRLF 251

Query: 266 HEATLLEIAYAHETMPKGFVGLNAP---SCEQYMQFIANRRCHQIGLEPLFKYTENPFP- 321
            EA  +EI +     P     L+     + E Y++F A+R    I ++PL+  +  P P 
Sbjct: 252 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPD 310

Query: 322 --WMSEVIDLKKEKNFFETRVTEYQ 344
             +   ++   K  NFFE R T Y 
Sbjct: 311 ASFPLSLMSTDKHTNFFECRSTSYA 335


>gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 118/324 (36%), Gaps = 31/324 (9%)

Query: 32  NQLLPLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           N  +P +Y               +  N W+ +E+    D       + L+ +E    +  
Sbjct: 6   NNDIPERYFYTSECPDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFL 62

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
             F ++++ LV   +   +    S  +   Y + Q   E VHS  +  I   L   +   
Sbjct: 63  FTFLSAADDLVTEEL-GRLSSLFSQKDILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-- 119

Query: 146 FNMYREVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
                     TA+ N+      +  +         +  D   + + F+  ++ EG++F  
Sbjct: 120 ----------TARRNYVANTVHSSAIQPKVRWLEARVRDCPSVPEKFILMILIEGIFFAA 169

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA I  L   N +    +    I RDE++H      + N    +    + K   ++ + 
Sbjct: 170 SFAAIAFLRTHNILKVTCQSNDLISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQ 225

Query: 264 MLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
           +   A  +EIA+     P     L+     + E Y++F A+R    IG   LF       
Sbjct: 226 LFSNAVEIEIAFIKAKAPANSRILDGAAIAAIESYVRFSADRLLKLIGEPALFDEPPPND 285

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQ 344
            +   ++  +K  NFFE R T Y 
Sbjct: 286 GFPLRLMSTEKHTNFFECRSTAYA 309


>gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 118/324 (36%), Gaps = 31/324 (9%)

Query: 32  NQLLPLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           N  +P +Y               +  N W+ +E+    D       + L+ +E    +  
Sbjct: 6   NNDIPERYFYTSECPDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFL 62

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
             F ++++ LV   +   +    S  +   Y + Q   E VHS  +  I   L   +   
Sbjct: 63  FTFLSAADDLVTEEL-GRLSSLFSQKDILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-- 119

Query: 146 FNMYREVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
                     TA+ N+         + +       +  D   + + F+  ++ EG++F  
Sbjct: 120 ----------TARRNYVANTVHNSAIQAKVRWLEARVRDCPSVPEKFILMILIEGIFFAA 169

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA I  L   N +    +    I RDE++H      + N    +    + K   ++ + 
Sbjct: 170 SFAAIAFLRTHNILKVTCQSNDLISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQ 225

Query: 264 MLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
           +   A  +EIA+     P     L+     + E Y++F A+R    IG   LF       
Sbjct: 226 LFSNAVEIEIAFIKAKAPANSRILDGAAIAAIESYVRFSADRLLKLIGEPALFDEPPPND 285

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQ 344
            +   ++  +K  NFFE R T Y 
Sbjct: 286 GFPLRLMSTEKHTNFFECRSTAYA 309


>gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 337

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 111/331 (33%), Gaps = 30/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P  +P+ +DL  W   N L DD + +I R     
Sbjct: 28  NWNKIVDEKDLEVWN---RVTQNFWLPENIPVSNDLPSW---NELDDDWQQLITRTFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ ++   +A  ++    + +      AF   VH+ ++  I ++L           
Sbjct: 82  TLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLC---------- 131

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                I     W +      + P        AD      +     +  G   Y GF    
Sbjct: 132 -TSEQIEEAHEWVVDNEALQARPKALIPFYTADDPLKSKI--AAALMPGFLLYGGFYLPF 188

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L    K+   ++  + I+RD+ +H  +          +       E +Q    +L +  
Sbjct: 189 YLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDKMI 248

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEV 326
            LE  Y H+      +   A    ++  + A +    +G E  F   E    P  +    
Sbjct: 249 GLEKTYLHQLYDGFGL---ADEAIRFSLYNAGKFLQNLGYESPFTKEETRIAPEVFAQLS 305

Query: 327 IDLKKEKNFFETRVTEYQQGA-----ELKWD 352
               +  +FF    + Y  G      +  WD
Sbjct: 306 ARADENHDFFSGSGSSYIIGTSEETLDEDWD 336


>gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
          Length = 307

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 107/317 (33%), Gaps = 28/317 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L  + +            N W P ++P+  D         L++ ++   K    F   +E
Sbjct: 10  LYVVDHPGFLALTEETWKNRWFPYQIPLAVDAKD---VTKLSETDKEFYKFLFIFLGLAE 66

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152
            LV  NI   +   + + + + Y   Q   E +H   +  I+      +      Y    
Sbjct: 67  KLVNFNIDELLVG-IHSHDAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFV 125

Query: 153 ---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
              P + AK +W                 K  +   + +  + +++ EG++F + F  I 
Sbjct: 126 VGNPGLKAKLSWLHD--------------KVREATTIAEKVLVFLLIEGIFFVSSFYSIG 171

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L       G+     YI RDE LH      + N +         K        +  EA 
Sbjct: 172 LLRVRGICNGVCLANDYISRDELLHTRAAALLYNTLV----DPDRKPPVHWIHNLFREAV 227

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            +EI +  E   +G   +N      +++  A+R   QI L  L+     P          
Sbjct: 228 DVEIRFIRER-GRGVTAVNIEDIISFLKATADRMLTQIKLPILYGELA-PSGCPLAFNAC 285

Query: 330 KKEKNFFETRVTEYQQG 346
            K  NFFE   T+Y   
Sbjct: 286 VKNINFFEREGTDYSSS 302


>gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5]
 gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria
           phage T5]
          Length = 381

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 122/316 (38%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + +       L A +  W  TE+ ++ D   W     L  + + +   NL +   ++S +
Sbjct: 30  VAHPELERLALLARSQFWTETEISLEADKKQW---PNLPREIQEITLLNLAWQTQTDSFI 86

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           +     AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     
Sbjct: 87  SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146

Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198
           A+   +++    L                +    T   +  +E    L   Y      E 
Sbjct: 147 ARIADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           M FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E  
Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAV 266

Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314
            K+   L +    EI + H     +  +GLNA   E+Y+ F+       IG+E    L  
Sbjct: 267 AKAPAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPV 326

Query: 315 YTENPFPWMSEVIDLK 330
            T+NP PW+   +D  
Sbjct: 327 ITKNPIPWIMNWLDTT 342


>gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
 gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
          Length = 381

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + +       L   +  W  TE+ ++ D   W     L  D + +   NL +   ++S +
Sbjct: 30  VAHPELERLALLQRSQFWTETEISLEADKKQW---PNLPRDIQEITLLNLAWQTQTDSFI 86

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           +     AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     
Sbjct: 87  SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146

Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198
           A+   +++    L                +    T   +  +E    L   Y      E 
Sbjct: 147 ARIADSVELFDELYLLGQYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           M FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E  
Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAL 266

Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314
            K+ T L +    EI + H     +  +GLNA   E+Y+ F+       IG+E    L  
Sbjct: 267 AKAPTQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPV 326

Query: 315 YTENPFPWMSEVIDLK 330
            T+NP PW+   +D  
Sbjct: 327 ITKNPIPWIMNWLDTT 342


>gi|32453719|ref|NP_861928.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           RB69]
 gi|32350538|gb|AAP76137.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           RB69]
          Length = 390

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 129/352 (36%), Gaps = 38/352 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            ++V+V ++ M            ++    +E+ +   +  W P EV +  D A +   N 
Sbjct: 7   TQQVDVLNEPMFFGSGLGLARYDIQRHKVFEELIEILSFFWRPEEVNLMLDSAQF---NK 63

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L   ++ +   NL + +  +S+        +   +S+P    ++    F E +HS ++ +
Sbjct: 64  LPQFQQDICTNNLKYQSLLDSIQGRAPSAVLMALISDPSLDTWVATWTFSETIHSRSYTH 123

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT--------------- 178
           I+ +L  D  ++F+      +I  +A    +Y   +   +                    
Sbjct: 124 IMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRNWENAKEVYECSIGSCQQN 183

Query: 179 ------------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQ 225
                       K    + L          E + FY  FA   +  +    M G A+  +
Sbjct: 184 DIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMK 243

Query: 226 YIMRDESLHLN----FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +I RDE LHL       ++    +   +     K   +K  T L +  +    +A     
Sbjct: 244 FIARDEQLHLRVLSTLSVNFNLVLMAMSGFKLLKNVNKKQLTFLWKLIVKYKEWAAHLFK 303

Query: 282 KGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
            G    +N  S   ++ ++   R  Q GL  P+    T++P+PW+ E ++  
Sbjct: 304 DGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLNSD 355


>gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
 gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
          Length = 381

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + +       L   +  W  TE+ ++ D   W     L  + + +   NL +   ++S +
Sbjct: 30  VAHPELERLALLQRSQFWTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFI 86

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           +     AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     
Sbjct: 87  SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146

Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198
           A+   +++    L                +    T   +  +E    L   Y      E 
Sbjct: 147 ARIADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           M FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E  
Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAV 266

Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314
            K+   L +    EI + H     +  +GLNA   E+Y+ F+       IG++    L  
Sbjct: 267 AKAPAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPV 326

Query: 315 YTENPFPWMSEVIDLK 330
            T+NP PW+   +D  
Sbjct: 327 ITKNPIPWIMNWLDTT 342


>gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4]
 gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4]
          Length = 305

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 40/323 (12%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +    +       N W P++V +  D+   KS   L   +R   K    F   +ESLV  
Sbjct: 13  HQGFLKLLHETWQNRWFPSQVSLHGDVNHLKS---LNVQDREFYKFLFTFLGMAESLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFN---MYREVPS 154
           NI   I +   + +   Y   Q   E +H+  ++ I+      D  E++    M     +
Sbjct: 70  NI-EDIIKQFESHDMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRA 128

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  K +W     +++S+                +  + +++ EG++F + F  I  L   
Sbjct: 129 LIRKLDWLHSRIKSVSNK--------------AEKVLLFLLVEGIFFVSSFYSIGLLRVR 174

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLE 272
               G+     YI RDE LH      + N +    + PH+           +  EA  +E
Sbjct: 175 GMFNGVCLANDYISRDELLHTRAAALLYNTMVSGADKPHML------WVHNLFKEAVEVE 228

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDL 329
             +       G   +N      +++  A+R    I L          + P          
Sbjct: 229 HEFI-LVKSSGVSAVNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPLV----YTGC 283

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
            K  NFFE   ++Y   + +K D
Sbjct: 284 VKNVNFFERDNSDYT--SSIKDD 304


>gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
 gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
          Length = 365

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 130/324 (40%), Gaps = 13/324 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ Y       W   EV +++    +++       E  +   NL +   ++S V+ 
Sbjct: 36  YPELFDLYKQQKAQDWSEDEVNLENSRIDFQTAAK---SEIEVCIENLLWQWEADSRVSR 92

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           NI+  +   +SN E    + +Q   E +H+ T+  I+     D  E+     +  ++  +
Sbjct: 93  NIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMDNQAVLDR 152

Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213
           ++        L         G +  D+   Q L  F V     EG+ F   FA   +L +
Sbjct: 153 SSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFACTFALAQ 212

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLLE 272
               +G+A+  Q IM DE LH       ++ +  +     + +  +   + +L E    E
Sbjct: 213 RGLFMGVAQLVQKIMLDEILHSKMDFAALDILLKDPVWFQSYQNCKGDVQRILDEVMENE 272

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDL 329
             +A     +G   VGLN    ++++ + A      + L+  +    +NP P+M + +++
Sbjct: 273 SNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLDYNYPVVVKNPLPYMDKWMNI 332

Query: 330 KKEKNF-FETRVTEYQQGAELKWD 352
             ++N   E   ++Y     +  D
Sbjct: 333 DSQQNANQEQDNSQYLLNTMVNDD 356


>gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 224

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 24/231 (10%)

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
             E ++S  +  ++ +   D   +  F     +P +  K  +  ++              
Sbjct: 1   MMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI------------- 47

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D     +  V +   EG++    +A +  L     M G+A   + I RD   + +F  
Sbjct: 48  SNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSC 107

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +         HL TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+
Sbjct: 108 LLF-------AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFV 160

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+      G E  +    NPF +M +V    K   FFE +V++YQ+ +++ 
Sbjct: 161 ADGLLQGFGNEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 209


>gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2001_A]
 gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2004_A]
          Length = 450

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 134/302 (44%), Gaps = 13/302 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ +    +  W   E+ +  D   ++S +  T D   ++ + L +   ++SL + 
Sbjct: 37  YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +IV      ++N +  Q +LR +  EA+HS T+  II     +  ++F        +T +
Sbjct: 94  SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153

Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLG 212
           +    +    L      +T   +   ++ ++++ +  +V     E M F   FA   +L 
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLL 271
                +G+A   Q IM DE++H      +IN +  +   L T ++ +   + ++      
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273

Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVID 328
           E++++     +G   VGLN    ++++Q+ +     ++G+E  F+    NP PWM   +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333

Query: 329 LK 330
           + 
Sbjct: 334 ID 335


>gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_D]
 gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_C]
 gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_B]
 gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_A]
 gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2005_A]
          Length = 450

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 134/302 (44%), Gaps = 13/302 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ +    +  W   E+ +  D   ++S +  T D   ++ + L +   ++SL + 
Sbjct: 37  YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +IV      ++N +  Q +LR +  EA+HS T+  II     +  ++F        +T +
Sbjct: 94  SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153

Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLG 212
           +    +    L      +T   +   ++ ++++ +  +V     E M F   FA   +L 
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLL 271
                +G+A   Q IM DE++H      +IN +  +   L T ++ +   + ++      
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273

Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVID 328
           E++++     +G   VGLN    ++++Q+ +     ++G+E  F+    NP PWM   +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333

Query: 329 LK 330
           + 
Sbjct: 334 ID 335


>gi|213612729|ref|ZP_03370555.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 234

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 19/232 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182
           + +II ++  D   +F+       I  +A     Y   L   +        GT   +   
Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182

Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                   ++ L    +     E + FY  FA   +      M G A+  + 
Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRL 234


>gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
           scotoductus SA-01]
 gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
           scotoductus SA-01]
          Length = 323

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 119/315 (37%), Gaps = 18/315 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y        +  +++W+ TE     D+  +        + R +++R+L   +  E  
Sbjct: 11  PYEYPRLLAYRDAIRHSYWLHTEFSYAADVQDYALAG---PEVRSLVERSLLAISQVELS 67

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V        Y     PE  +  +  A  E  H++ + +++  L L++     + +E    
Sbjct: 68  V-KLFWARTYEVFPKPEVAEVGMTFAESEVRHANAYAHLLDLLALEDRFAQALEKET--- 123

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
                 AL+      +    +  +   +     L +F    E    ++ F  +++L +  
Sbjct: 124 ------ALRERHRHLTAVLGSAFRGDLRGHALALLLFSAFTEHASLFSQFYVLMALNKRL 177

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            +  GI+   +   ++E+LH  FG++++  ++ E P L+   F +++   +      E A
Sbjct: 178 GRFKGISNAIEATSKEENLHGLFGVELLRILREERPDLFGPSFTEEALDRVEAFFRTEEA 237

Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLK 330
                  +G    +      +++++  N+     GL   F   +       W    +   
Sbjct: 238 LLEWIFARGDTEAVRGEEVLEFLKWRYNQVLALHGLPAPFPVRKECLRDTEWFDLELLAD 297

Query: 331 KEKNFFETRVTEYQQ 345
           KE +FF  R   Y +
Sbjct: 298 KEVDFFNKRSVAYAR 312


>gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
 gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
          Length = 182

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +D+  W +   LT  E+ +  R     
Sbjct: 13  NWNRIEDEKDLEVWN---RLTMNFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++        +      P     L    F EAVH+ ++  I ++L L  D  E + 
Sbjct: 67  TLLDTIQNTVGAPTLMPDALTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+Y Q              D++ L+      V  E   FY+GF  
Sbjct: 127 WSEENPYLQKKAEIILRYYQ--------------DEDPLKKKI-ASVFLESFLFYSGFYL 171

Query: 208 ILSLGRANKM 217
            +      K+
Sbjct: 172 PMYWSSRGKI 181


>gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi]
 gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi]
          Length = 288

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 7/176 (3%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R   + + +L    +   + P+K+   W+ Y  A  + W   EV +  D   W++   L 
Sbjct: 40  RYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LN 96

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I
Sbjct: 97  DGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMI 156

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            +   D+ +    +R+           L   +  +S        DA QE+L +   
Sbjct: 157 DTYIRDQKQK--KFRKFCVTLCFLEINLSNYKKFTS--MFNACIDAKQEYLTEALP 208



 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 79/203 (38%), Gaps = 18/203 (8%)

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W +                D ++ F+  +  F+   +G+        +    +  ++   
Sbjct: 78  WTVDEVDLSKDYRDWENLNDGERHFISRVLAFFAASDGIVNEN---LVNRFSQEVQVPEA 134

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPH-------------LWTKEFQQKSRTMLHE 267
              Y + +  E++H      +I+    +                       +K  +M + 
Sbjct: 135 RFFYGFQIMIENIHSEMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNA 194

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +  Y  E +P   +G+N     QY++++A+    ++    ++ +++NPF +M E I
Sbjct: 195 CIDAKQEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDNPFDFM-ERI 252

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
            ++ + NFFE RV+EYQ+   L 
Sbjct: 253 SIEAKTNFFEKRVSEYQKAGVLS 275


>gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 176

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++ + GL      ++  N   + +L    +   + P++Y   W+ Y  A  + W   EV 
Sbjct: 33  ISQDHGLKNGVQLKEDFNPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVS 92

Query: 61  MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           +   D   W     L  DE+  I   L FFA+S+ +V  N++    + +  PE R +   
Sbjct: 93  LHKQDKKDWNE--KLNSDEKRFISHVLAFFAASDGIVNENLIEKFSQEVKIPEARCFYGF 150

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL 145
           Q   E +HS  +  +I +   D  E 
Sbjct: 151 QIAIENIHSEMYSLLIETYISDPKEK 176


>gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 196

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQT 168
           + E    FN    +PSI  KA WA ++  +
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS 172


>gi|32709417|gb|AAP86727.1| NrdB [Enterobacteria phage LZ2]
          Length = 313

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 101/282 (35%), Gaps = 36/282 (12%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189
           +A    +Y   +   +                                 K A  + L   
Sbjct: 149 RAESIGRYYDDVLIKTREWENAKEFVELSKESPDADFRLNRAIKQEAEAKRALMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                  E + FY  FA   +  +    M G A+  ++I RDE LHL     +I Q+++ 
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268

Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
                     +E +Q++  +  E    E  +A      G V 
Sbjct: 269 TDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVP 310


>gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 187

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            ++     +   E L    +   + EG+ FY+GFA   +L R NKM G  +   +I RDE
Sbjct: 2   DAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDE 61

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
             H  F  +VI  I  ENP L T+E  + +      A  LE  ++ E + +G  G++   
Sbjct: 62  LAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEE 120

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
              Y+++ AN+    +G+  L+  +++N   W+    D   + + +FFE R + Y++
Sbjct: 121 MVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177


>gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 276

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 20/259 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 25  GKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 81

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 82  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 141

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 142 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 186

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 187 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 246

Query: 264 MLHEATLLEIAYAHETMPK 282
            L +   LE  Y HE    
Sbjct: 247 FLDKLIDLEKKYLHELYDD 265


>gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus]
          Length = 181

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 22/199 (11%)

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
              K  L FFA S+ +V  N+V   Y  +   E R +   QA  E +H+  +  +I +L 
Sbjct: 1   DFFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLI 60

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            +E E    F+ +   P IT K  WA Q+              + +     +  V + V 
Sbjct: 61  PNEDEQRSIFSSFMTTPGITEKTRWAKQW-------------LERENLSFVERLVAFAVV 107

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   FA I  L +   M G+    + I RDE LH +F   +  +      H+  K 
Sbjct: 108 EGLLFSGSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYTK------HIVHKL 161

Query: 257 FQQKSRTMLHEATLLEIAY 275
                  ++ EA   E  +
Sbjct: 162 PNNVIYNIVREAVHAESIF 180


>gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 287

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 20/259 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 36  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 93  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y          TG      +    +        G   Y 
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 197

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257

Query: 264 MLHEATLLEIAYAHETMPK 282
            L +   LE  Y HE    
Sbjct: 258 FLDKLIDLEKKYLHELYDD 276


>gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 183

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGEL---FNMYREVPSITAKANWALQYTQT 168
           + E    FN    +PSI  KA WA ++  +
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS 172


>gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 305

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 20/303 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  NI 
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDV---CCVDLLNERDIEFYKFLFTFLGMAEKLVNINI- 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +     + +   Y   Q   E +H   +  I+  L  +          +  + + A+ 
Sbjct: 72  EDLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKN---------NITEVYSYAHD 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +          +  G      +  + + +F ++ EG++F + F  I  L     M GI 
Sbjct: 123 IMNDCALQEKIRWLNGRVTETSDKAEKILLF-LLVEGIFFISSFFSIGLLRVRGIMNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI RDE LH +    + N +   +     +  ++    +  EA  +E  +      
Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTKPS----ERPPEKWIYELFREAVEVEFKFIS-AKV 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G   +N     Q++Q  A+R    I L P++     P           K  NFFE   +
Sbjct: 237 HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVP-PANCPLVYTSSTKSVNFFERDNS 295

Query: 342 EYQ 344
           +Y 
Sbjct: 296 DYT 298


>gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus
           granularis]
          Length = 141

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 16/154 (10%)

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  
Sbjct: 1   HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
               LFN    +P +T KA WAL +               +D        V +   EG++
Sbjct: 61  QRDYLFNAVETMPCVTKKAQWALDWI-------------SSDSADFGTRIVAFAAVEGIF 107

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           F   FA I  L +   M G+    + I RDE LH
Sbjct: 108 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141


>gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 193

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1467]
          Length = 212

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 19/222 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WEK        W+ T +P+ +DL  W++   L+D E+  +    G  
Sbjct: 9   NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ + + +  +   +  P     L    F E+VH+ ++  I ++L   + E+ +++
Sbjct: 63  TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                     N  LQY     +  +  GT    +       +  V  E   FY+GF   L
Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                NK+  +AE  + I+RDES+H  +          E P 
Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPE 211


>gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
 gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
          Length = 193

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L          +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKS-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
 gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
          Length = 193

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11]
          Length = 322

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 115/325 (35%), Gaps = 30/325 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
             Y  A +      +  W   E+ ++ D+   +    +T+ E   +   L  F   E + 
Sbjct: 13  FDYPEAIQFAKVQSSIFWTDDEINVEKDIQDIR--VNMTEAEAHGVITTLRLFTLYELVA 70

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +  L  + +    P+  +      F E  VH+  +  I  +L L+  E +  Y   P 
Sbjct: 71  GRDYWLGRVLKTFPRPDIERMAATFGFFELNVHAPFYNKINEALMLNTDEFYLAYVNDPI 130

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--G 212
           +  +  +     +              + + L  L  F +V EG   Y+ FA +      
Sbjct: 131 LKERMEFVDSLVE--------------EDDPLYSLGAFSMV-EGAVLYSSFAFLKHFQAK 175

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEAT 269
             NK++ +     + +RDE+LH   G  + N +K E            +       H   
Sbjct: 176 GKNKLMNVVRGINFSVRDENLHCEGGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIA 235

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-PFPWMSEVI 327
             E         KG   G+ A   + +++   N    Q+G+EP+F+ + N    W  + I
Sbjct: 236 EHEFRIVDMIFEKGEMEGITAEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGI 295

Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352
           +     +FF      Y +     WD
Sbjct: 296 NGVMFHDFFSGIGNSYNRS----WD 316


>gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
 gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
          Length = 193

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P       +  ++ L    V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007]
          Length = 642

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 128/315 (40%), Gaps = 34/315 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    +       N W   E+    DLA+W     L +  R  IK  L F A  + +V 
Sbjct: 73  RYPVLADLADKLQANQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVK 129

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
             I +    +    EC ++   Q   E+ H   +   +T+   ++ EL  +     ++  
Sbjct: 130 EAIPMH-MSNFPLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEE 188

Query: 158 KANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            A   L+    L +  + +G++      + + +L  F  +F  M   TG           
Sbjct: 189 FA--PLKAKVDLINEIYKSGSRAEQVLYQTVMELIGFCSLFSIMLMPTG----------- 235

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
            +  + E  Q +  DE+LH +F   + N +         +   +K + ++ +A  +EIA+
Sbjct: 236 -LKTLIEGNQSVRNDETLHGSFYAALHNIMP-------DRASPEKVKEIIVKAVEIEIAF 287

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK------YTENPFPWMSEVIDL 329
           A   + +    +N  S + +++  AN  C  +G+EP++          +P  +M+    L
Sbjct: 288 AMSIVTEDLEHINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVSPLSYMNNYETL 347

Query: 330 KKEKNFFETRVTEYQ 344
           +K  NFFE R  +Y 
Sbjct: 348 QK-FNFFEVRNMDYS 361


>gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
 gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
          Length = 324

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +  +++W+ TE   Q DL          + ER +++R L   A
Sbjct: 7   RLAYRPYEYPELLRFRDAIRHSYWVHTEFSFQSDLQD---HALADEKERSLVERALLAIA 63

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE  +  L  A  E  H++ + +      L   E F    
Sbjct: 64  QVELAV-KLFWARVYDRFPKPEIAEVGLTFAESEVRHANAYAH--LLELLGLEEAFGQAL 120

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S       AL+        +         +E+   LF+F    E +  ++ F  +++
Sbjct: 121 EGAS-------ALRDRAQALGEALRRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMA 173

Query: 211 LGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           L R   +  GI+   +   ++E++H  FG++++  ++ E+P    + FQ+++  +     
Sbjct: 174 LNRRGNRYKGISNAIEATSKEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLF 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E A        G    +      ++++   N+     GL P F   E       W + 
Sbjct: 234 RAEEALLDWLFSAGEPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTL 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   KE +FF  R   Y +
Sbjct: 294 ELLADKEVDFFNKRSVAYAR 313


>gi|300362837|ref|ZP_07059008.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300353073|gb|EFJ68950.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 275

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 94/291 (32%), Gaps = 28/291 (9%)

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L+DD + +I R        ++  ++   +A  ++      +      AF  AVH+ ++
Sbjct: 2   NQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSY 61

Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I ++L   E   E         ++ A+A   + Y          TG      +    +
Sbjct: 62  GTIFSTLCTSEQIEEAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAI 112

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                   G   Y GF     L    K+   A+  + I+RD+ +H  +          + 
Sbjct: 113 MP------GFLLYGGFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKL 166

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                 E ++     L +   LE  Y HE                +  + A +    +G 
Sbjct: 167 APAKQAEMKKFVFDFLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGY 223

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
           +  F   E   +P  +        +  +FF    + Y  G      +  WD
Sbjct: 224 DSPFTAEETYISPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 274


>gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2]
          Length = 301

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 120/303 (39%), Gaps = 21/303 (6%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
              + Y +   N W+  ++   +D   +K    L +  +   K    F   +E LV  N+
Sbjct: 12  DFRQLYRTVTENRWLEGQISFLND---YKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNL 68

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
              I   L +P+   Y + Q   E VH+ T++ I+ ++  D  E         +I   A+
Sbjct: 69  FDMI-ERLEDPDVIHYYIEQMSIECVHARTYRRIL-NIFYDNDEK--------AIMCAAD 118

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           + L+    L   SF   T   + + L    +  ++ EG++F + F  I  L       G 
Sbjct: 119 FYLKDPALLKKISFLEKTI-RECDTLGKKIIVLILIEGIFFLSSFVSIAMLRTIG-FDGT 176

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            E   YI RDES+H      +     +       +       ++  +   +E  + +   
Sbjct: 177 TEANTYICRDESIHTTAATKLY----LNYVTPENRPSYSFIYSLFSDVIRIEKEFIN-AK 231

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
             G   +N       ++ +A++   +I ++PL+  T+ P      +  ++K   FFE R 
Sbjct: 232 VDGVGLINKKVIFDTLEGVADQLLARINMQPLY-ATQIPNNCPLPLSTIEKNVCFFEKRN 290

Query: 341 TEY 343
           TEY
Sbjct: 291 TEY 293


>gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2]
          Length = 305

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 107/303 (35%), Gaps = 20/303 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  NI 
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI- 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +     + +   Y   Q   E +H   +  I++ L  +          +  + + A  
Sbjct: 72  EDLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLFKN---------NITEVYSYACD 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +  +       +  G      +  + + +F ++ EG++F + F  I        M GI 
Sbjct: 123 IMNDSALQEKLKWLNGRVTEASDKAEKILLF-LLVEGIFFISSFFSIGLFRVRGIMNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI RDE LH +    + N +         +  +     +  EA  +E  +      
Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AKG 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G   +N     Q++Q  A+R    I L P++     P           K  NFFE   +
Sbjct: 237 HGVSLVNVHEIRQFLQATADRILESINLNPIYGSLP-PENCPLAYTSSTKSVNFFERDNS 295

Query: 342 EYQ 344
           +Y 
Sbjct: 296 DYT 298


>gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit,
           partial [Hydra magnipapillata]
          Length = 261

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 26/250 (10%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPM 61
           +  L    A +++    ++ +LN       + P+  K+   W+ Y    + +W   E+  
Sbjct: 21  SRLLLEYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDF 80

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D   +   +    + +  IKR L FFA ++S+V  NI   + + ++  E       Q 
Sbjct: 81  SNDRHDFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQ 136

Query: 122 FEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E  HS  +  ++  +  D     EL N ++ V SI     WA ++  +     ++   
Sbjct: 137 MMEDTHSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS--- 193

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHL 235
                       V + +FEG+ F   FA I  L +    + M G+ +    I +DE +H 
Sbjct: 194 -----------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHT 242

Query: 236 NFGIDVINQI 245
            FG  +   I
Sbjct: 243 IFGCVIYTFI 252


>gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2]
          Length = 305

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 20/303 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  NI 
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI- 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +     + +   Y   Q   E +H   +  I+  L  +          +  + + A  
Sbjct: 72  EDLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKN---------NITEVYSYACD 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +  +       +  G      +  + + +F ++ EG++F + F  I        M GI 
Sbjct: 123 IMNDSALQEKLRWLNGRVTEASDKAEKILLF-LLVEGIFFISSFFSIGLFRVRGIMNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI RDE LH +    + N +         +  +     +  EA  +E  +      
Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AKG 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G   +N     Q++Q  A+R    I L P++     P           K  NFFE   +
Sbjct: 237 YGVSLVNVHEIRQFLQATADRILESINLNPIYGSLP-PENCPLAYTSSTKSVNFFERDNS 295

Query: 342 EYQ 344
           +Y 
Sbjct: 296 DYT 298


>gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2]
          Length = 262

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 101/274 (36%), Gaps = 26/274 (9%)

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E    +    F ++++ LV  N+   +       +   Y + Q   E VHS  +  I   
Sbjct: 1   ELGFYRFLFAFLSAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLV 59

Query: 138 LGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           L  +  +    Y       P+I  K +W                 +  + + + + F+  
Sbjct: 60  LFHNNDQARRAYVARTINHPAIRVKVDWLE--------------ARVRECDSIPEKFILM 105

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++F   FA I  L   N +    +    I RDE++H      + N     +    
Sbjct: 106 ILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH---- 161

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLE 310
            K    +   +  EA  +EI +     P     L+  +    E Y++F A+R    I ++
Sbjct: 162 AKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQ 221

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           PL+        +   ++   K  NFFE R T Y 
Sbjct: 222 PLYSAPAPDASFPLSLMSTDKHTNFFECRSTSYA 255


>gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 109

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 1   QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 61  LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109


>gi|37651592|ref|NP_932466.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
 gi|66391913|ref|YP_238838.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
 gi|34732892|gb|AAQ81430.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
 gi|62114750|gb|AAX63598.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
          Length = 323

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 102/327 (31%), Gaps = 32/327 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++Y           +  W   E  + +D    ++   LT  E   I   L  F   E  V
Sbjct: 10  IRYPEFAALADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 67

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +     I R    PE  +     +  E   H+  +  +   L LD+   +  ++E   
Sbjct: 68  GEDYWTGRIARTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212
           ++ +  +                 K          F  +   EG   Y+ FA +      
Sbjct: 128 LSRRIQFVG---------------KSVSDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 172

Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLH 266
               + M  I       + DE  H   G  +   +  E          ++ +     M H
Sbjct: 173 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFRTLCREMMEHHKVDVREKLKDDIIAMAH 232

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G +P+F+   NP   W   
Sbjct: 233 QVYDHESGIIDLVFAEPIDGITADELRIFVKSRINLCLENLGYDPIFEIESNPIASWFYR 292

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
            I+ KK  +FF    +EY     + WD
Sbjct: 293 TINAKKFHDFFTGSGSEYN----INWD 315


>gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
 gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
          Length = 323

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 120/315 (38%), Gaps = 18/315 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y        +  +++W+ TE     D+             + +++R+L   A  E  
Sbjct: 11  PYEYPGLLRFRDAIRHSYWVHTEFSYSADVQD---HALAEPPVQSLVERSLLAIAQVELS 67

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V       +Y     PE  +  +  A  E  H++ + +++  LGL+    F  Y E  + 
Sbjct: 68  V-KLFWARVYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGLEG--RFARYLEEATP 124

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
                 AL+                + +E+   L +F    E +  ++ F  +++L R  
Sbjct: 125 LRDRAGALE-------GVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRA 177

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+  GIA   +   ++E++H  FG++++  ++ E P L+ + F ++      E    E A
Sbjct: 178 NRFKGIANAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEEVLRAAQELFRAEEA 237

Query: 275 YAHETMPKGFVGLNA-PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLK 330
                   G           ++++   N+     GL   F+  +       W +  +   
Sbjct: 238 LVDWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGLPGPFQVRDEVLKDTAWFALELLAD 297

Query: 331 KEKNFFETRVTEYQQ 345
           K+ +FF  R   Y +
Sbjct: 298 KDVDFFNKRSVAYAR 312


>gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9]
 gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9]
          Length = 203

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 21/220 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N  ++R             ++  +  + +    +  W  T VP+ +DL  W++   L  
Sbjct: 1   MNETERRAKAGVYKAINWNEIEDNYDKQTWEKLNSQFWTATRVPVSNDLDDWRT---LDP 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             + +  +  G     ++L + + +L++      +P  R  L    F EA+H+ ++  I 
Sbjct: 58  VAKDLYGKVFGGLTLLDTLQSQDGMLSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIF 117

Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++L   +    +F+       +  KA+   +  Q  + P                  +  
Sbjct: 118 STLMTPQEIANVFDFTHTNEHLQKKAHLINEVYQNGTVPQ---------------KMIAS 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
           V  E   FY+GF   L      KM  +AE  + I+RDES+
Sbjct: 163 VFLESGLFYSGFYTPLYYLGNGKMANVAEVIRLILRDESV 202


>gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 172

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           VNQ+LP K+   W+ +L +  N+W P E+ M  D+  WK  + L+DDE+L++KR LGFFA
Sbjct: 15  VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWK-GDDLSDDEKLLVKRCLGFFA 73

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T      S GL   E+F  Y+
Sbjct: 74  GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            + SI AK ++ +  T  ++   F+T T +  + F + 
Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIFKKS 171


>gi|109290088|ref|YP_656337.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
 gi|104345761|gb|ABF72661.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
          Length = 332

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 101/318 (31%), Gaps = 28/318 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY    +      +  W   E  + +D+   ++   LT  E   I   L  F   E  V
Sbjct: 19  IKYPEFGKLADEQMHAFWPWDEPVVDNDIQDLRT--KLTPGELNGITTVLKLFTIYERKV 76

Query: 97  ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +     I      PE  +     +  E   H+  +  +   L LD+   +  ++E   
Sbjct: 77  GEDYWSGRIAHTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212
           ++ +  +                 K  +       F  +   EG   Y+ FA +      
Sbjct: 137 LSRRIQFVG---------------KSVNDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 181

Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLH 266
               + M  I       + DE  H   G  +   +  E    + ++     +     M  
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAR 241

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G EP+F+   NP   W   
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301

Query: 326 VIDLKKEKNFFETRVTEY 343
            I+ KK  +FF    +EY
Sbjct: 302 TINAKKFHDFFTGSGSEY 319


>gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
 gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
          Length = 332

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 101/318 (31%), Gaps = 28/318 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY    +      +  W   E  + +D    ++   LT  E   I   L  F   E  V
Sbjct: 19  IKYPEFAKLADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 76

Query: 97  ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +     I R    PE  +     A  E   H+  +  +   L LD+   +  ++E   
Sbjct: 77  GEDYWSARIARTFGRPEINRMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212
           ++ +  +                 K          F  +   EG   Y+ FA +      
Sbjct: 137 LSRRIQFVG---------------KSVSDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 181

Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLH 266
               + M  I       + DE  H   G  +   +  E    + ++     +     M +
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAY 241

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G EP+F+   NP   W   
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301

Query: 326 VIDLKKEKNFFETRVTEY 343
            I+ KK  +FF    +EY
Sbjct: 302 TINAKKFHDFFTGSGSEY 319


>gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi]
 gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 117/318 (36%), Gaps = 32/318 (10%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNN-HWMPTEVP--MQDDLALWKSKNGLTDDE 78
           + +L+       L P++Y   WE Y     +  W   +    +++D++     + + + +
Sbjct: 15  EEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRNDIS---KLSEICNSD 71

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
              IK  L F  ++      N+  A  + +   E + +   +   + +H   +  +   L
Sbjct: 72  HSFIKIILAFLVANC-KQKTNLWGAF-KDIQILEAKHFHGFRLAMKNIHYEMYCNLFEIL 129

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                            T ++    +   +    S  T           +  +  V  E 
Sbjct: 130 --------------TEETERSELIEKMINSTMKKSQYTKKWLNSDNLFSERLIGLVCIEQ 175

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++    F  I  L +   M  +      I RDE  H NF   + + +K       +K  Q
Sbjct: 176 IFLSASFFSIFWLKKRGLMSALTISNDLIFRDEEFHSNFLYSLYSNLKH------SKLPQ 229

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
               +++ EA  +E  +   ++P   + L+  S  QY++ +++      G E LF +TEN
Sbjct: 230 TLVHSLVKEAVDIEKEFIT-SLPTELIELDRNSMYQYVEVVSDNILISFGYEKLF-HTEN 287

Query: 319 PFPWMSEVIDLKKEKNFF 336
              W+ +++  K    FF
Sbjct: 288 QCSWIQDMLMNKSG--FF 303


>gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W++   LT D
Sbjct: 3   SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
           E+  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  
Sbjct: 60  EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEI 112



 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 2/99 (2%)

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           L  K  +++ + ++ ++  +E  +  + +P   VG+N+    QY++F+A+R    +G   
Sbjct: 114 LRNKLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGK 173

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++  + NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 174 MYNVS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 210


>gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana]
          Length = 231

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+D
Sbjct: 3   SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTND 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
           ER  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  
Sbjct: 61  ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEI 113



 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 27/207 (13%)

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF---YT 203
            MY++  +    A        +  +  +     + ++ F++ +  F+   +G+      T
Sbjct: 29  EMYKKAEASFWTAEEVDL---SQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLST 85

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            F   + +  A    G           E++H                 L TK  + + + 
Sbjct: 86  RFMSDVQISEARAFYGFQIAI------ENIHSEIL-------------LRTKFDEDRLKA 126

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323
           ++ +A  +E  +  + +    VG+N     QY++F+A+R    +G   ++  T NPF WM
Sbjct: 127 IVCDAVEIEREFVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM 185

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAELK 350
            E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 186 -ELISLQGKTNFFEKRVGEYQKASVMS 211


>gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 240

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             Y E+  +T+  +   + T T++  +     ++  ++    L       E + FY  FA
Sbjct: 20  AYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFA 78

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSR 262
              +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+  
Sbjct: 79  CSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECY 138

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F+   NP P
Sbjct: 139 DLFVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP 198

Query: 322 WMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
           W++  +     +    E  V+ Y   Q  +E+  D
Sbjct: 199 WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 233


>gi|326333061|ref|ZP_08199312.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949135|gb|EGD41224.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 334

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 109/323 (33%), Gaps = 31/323 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
             Y  A +      +  W   E+P+++D   +     +TD E+  +K  L  F   E ++
Sbjct: 20  FDYPMAEDLAKKQRSIFWTAEEIPVENDKQDF--LVNMTDAEQAAVKTTLKLFTIYELIL 77

Query: 97  ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
              +    ++     PE +      +F E  +H+  +  +  +L +D  E ++ Y+  P 
Sbjct: 78  GGEVWGDRLFHAFPRPEIQMMTNAFSFAELNMHAPFYAKLNKTLMIDTEEFYDSYKNDPV 137

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI--LSLG 212
           +  +  +                      + L      + + E    Y+ FA +     G
Sbjct: 138 LAERIAFVWDAIAD---------------DDLLYALSVFTLMENCVLYSNFAFLKHFQSG 182

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------PHLWTKEFQQKSRTM 264
             N +  +     +  RDE+LH   G  + N    E               +   + R +
Sbjct: 183 GKNLLQNVISGINFSARDENLHATGGAWLFNTTLDEYAATVPADKFEAERDDLFARVRGV 242

Query: 265 LHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322
                  E          G +  +     E +++   +     + +EPLF    NP   W
Sbjct: 243 AEHLYAHEARIVEMLFAHGPITGIEQADLEAFVRSRIDMTLENMRMEPLFGVEPNPVAEW 302

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345
               I+  +  +FF+    EY +
Sbjct: 303 FYAGINGTQFHDFFQVTGNEYNR 325


>gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 242

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 90/250 (36%), Gaps = 27/250 (10%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWAL 163
             +   +    L      E++H+ ++  I+TSL       E+F      P +  KA    
Sbjct: 3   PDVRTRKEAAVLNDFLMMESIHAKSYGTILTSLNDQATVDEVFKWMNNNPRMQYKAKRIN 62

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              QT ++                      V  EG+ +YT F   L     NK+  ++E 
Sbjct: 63  DIYQTGNNLEKKV---------------ASVFLEGILYYTNFFTPLWYRGNNKLANLSEV 107

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PK 282
            + ++RDES+H  +          E      K F++    +L +    E A+  E   P 
Sbjct: 108 IKLVIRDESVHGTYLGYKFQLGYNELSATEQKTFKKWMDELLDDLLENEFAFTEEVYAPI 167

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFET 338
           G     A   +Q++ + AN+    +GLE  F   E    NP   M+ +       +FF  
Sbjct: 168 GL----AEDVKQFVHYNANKALQNMGLESRFPNAEIKDINPIV-MNGISTETANHDFFSQ 222

Query: 339 RVTEYQQGAE 348
               Y  G  
Sbjct: 223 VGAGYLMGNA 232


>gi|194172964|ref|YP_002003608.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
           rv5]
 gi|114796002|gb|ABI79176.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
           rv5]
          Length = 362

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 138/326 (42%), Gaps = 16/326 (4%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY   +E Y       W   EV +   ++ + + +  T D   ++ + L +   ++S+ A
Sbjct: 33  KYPQLFELYKKQKEQDWAEDEVDLSQSISDFVTCSKSTYD---VMVQTLMWQWEADSVAA 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +I+      ++N E    L++Q+  E +H+ T+  I+     +  E+    +E  ++ +
Sbjct: 90  RSIICLFSPFITNSELFTLLMKQSEIEVLHALTYSEIVRQCLPNAREIIEEIQENQNVLS 149

Query: 158 KANWALQYTQTL--SSPSFTTGTKDADQEFLQDLFVFYVVF----EGMWFYTGFAQILSL 211
           ++   ++Y Q L      +        ++ ++   +  +      E + F   FA   ++
Sbjct: 150 RSGVIVKYMQELEVIGAKYRLDPSSVKEDIVRKCILRALFALLALESIEFIASFACTFAV 209

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATL 270
                 V +A+  Q IM DE LH      +I+ +  +     +  E + + + +L E   
Sbjct: 210 AEQGIFVQVAQLVQKIMLDEMLHSKGDFAIIDILLNDPAWEKSFLEIKGELKEILDEVRT 269

Query: 271 LEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
            E  ++     +G   +GLN+P  ++++ +  +      G++  F   T++P P+M   +
Sbjct: 270 KEYGWSDYIFSEGRAIIGLNSPLLKEWVDYNCSPIYDYYGIDKDFVPPTKDPLPFMQVWM 329

Query: 328 --DLKKEKNFFETRVTEYQQGAELKW 351
              L++  N  E   T+Y+    +  
Sbjct: 330 KPSLQQTAN-QEMSNTDYRVNTTVND 354


>gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 112/322 (34%), Gaps = 32/322 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +  D+ +L        L P+++   W+ Y +   N W   EV M DDL  ++    L+  
Sbjct: 13  DTTDEPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRK 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ ++ +          L    I+      +  PE R +   Q  ++ +HS     I+  
Sbjct: 70  EQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDM 129

Query: 138 LG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-----KDADQEFLQDL 189
                    +L ++ +++PS T    WA  +      P     T     +   Q  L+D+
Sbjct: 130 FSESEKQRDDLLDVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQAIHQVSLRDI 189

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F    E            +   ++ + G+      I  D+  +L+F   +        
Sbjct: 190 IAFIAGPETSTLPV------TSSESHLLHGVVHAMHKIHHDQLQYLSFLALI-------Q 236

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-------NAPSCEQYMQFIANR 302
            +L  +   Q    M   A   E     +        +          + +  ++F+ + 
Sbjct: 237 SNLVRRADTQLVHLMARAAVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDM 296

Query: 303 RCHQIGLEPLFKYTENPFPWMS 324
               +G   ++ + ++P PW+S
Sbjct: 297 CLTTMGYPAMY-HVQDPIPWIS 317


>gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 202

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European catfish virus]
 gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European sheatfish virus]
          Length = 202

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HWM TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L       V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLFRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Short-finned eel ranavirus]
          Length = 202

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L       V+ EG+  +  F  +++  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLFRAVLNEGVSLFAAFVMLMTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
 gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
          Length = 242

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 78/208 (37%), Gaps = 22/208 (10%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQD 188
           +F+   E   I  +A     Y   L   +     +  G    +           ++ L  
Sbjct: 2   VFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYI 61

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +     E + FY  FA   +      M G A+  + I RDE+LHLN    +IN ++  
Sbjct: 62  CLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNG 121

Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
                     +E +Q    +  EA   E  +A      G  +GLN     QY+++I N R
Sbjct: 122 QDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIR 181

Query: 304 CHQIGLEPLFK-YTENPFPWMSEVIDLK 330
              +GL   +   T NP PW++  +   
Sbjct: 182 MQAVGLPAAYPEATTNPIPWINAWLSSD 209


>gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris]
 gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris]
 gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris]
 gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris]
 gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris]
 gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris]
 gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris]
 gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris]
 gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris]
 gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris]
 gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris]
 gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris]
 gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris]
 gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris]
 gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris]
 gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris]
 gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris]
 gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris]
 gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris]
 gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris]
 gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris]
 gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris]
 gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris]
 gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris]
 gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris]
 gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris]
 gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris]
 gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris]
 gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris]
 gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris]
 gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris]
 gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris]
 gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris]
 gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris]
 gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris]
 gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris]
 gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris]
 gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris]
 gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris]
          Length = 175

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 14/184 (7%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M+ D   +   N L+  E+      +G  A+ +S     I   +  ++++P    
Sbjct: 1   PDEVDMKGDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHA 56

Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +          
Sbjct: 57  NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD----- 111

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                +D   E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  
Sbjct: 112 ---FMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168

Query: 234 HLNF 237
           H  F
Sbjct: 169 HSKF 172


>gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
 gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
          Length = 147

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
             N +  +     Y  RDE LH +F   + + ++        K  Q++   ++ +A  +E
Sbjct: 6   GNNTISSVFRLINYFFRDEGLHRDFACLLYSMLQ-------NKLTQERIFEIIKDAVCIE 58

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +  E +P   +G+N     QY++F+A+    ++G + L+   +NPF +M E I +  +
Sbjct: 59  QEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-KNPFDFM-ENISIDGK 116

Query: 333 KNFFETRVTEYQQGAELK 350
            NFFE RV+EYQ+   + 
Sbjct: 117 TNFFEKRVSEYQRPGVMS 134


>gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
 gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
          Length = 257

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N++ PL     W+ Y     N W+  E+   DD   W+    LT+DER      L FF +
Sbjct: 80  NEISPL---DIWKMYKKTLANQWVVEEIESSDDGLDWEK--KLTNDERDFFSNVLAFFVA 134

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNM 148
           S  ++  N+       +  PE + +   Q   + +HS T+  +I +   D   + +LFN 
Sbjct: 135 SCGIINKNLN-RFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNA 193

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
              +P +  KA WAL++                  E  +   V  V FE ++F   F  I
Sbjct: 194 IETIPCVKKKAEWALKWIN----------------ESFEKRLVALVAFESIFFSGSFRII 237

Query: 209 LSLGRANKMVGIAEQYQYIM 228
             L + + M G+    + I 
Sbjct: 238 SLLKKRSLMQGLTFSNELIN 257


>gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod
           iridovirus/15/04.11.92/DNK]
 gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Pike-perch iridovirus]
          Length = 202

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Bohle iridovirus]
          Length = 202

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 147 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 170

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 20/179 (11%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L    +    +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           E P +  KA   L +                  E L+      V  E   FY+GF   +
Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPM 170


>gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 189

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           S PE   ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   
Sbjct: 1   SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60

Query: 169 LSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           L   +        GT   +           ++ L    +     E + FY  FA   +  
Sbjct: 61  LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFA 120

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEA 268
               M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A
Sbjct: 121 ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 180

Query: 269 TLLEIAYAH 277
              E  +A 
Sbjct: 181 AQQEKEWAD 189


>gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 202

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|289810170|ref|ZP_06540799.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 215

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 23/225 (10%)

Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           +  I ++L    +    +    E P +  KA   L +                  E L+ 
Sbjct: 1   YSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHY--------------VSDEPLKK 46

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                V  E   FY+GF   +      K+   A+  + I+RDE++H  +          +
Sbjct: 47  KI-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQK 105

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              +  +E +  +  +L E    EI Y      +   G      + ++ + AN+    +G
Sbjct: 106 LSAIEREELKLFALDLLMELYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLG 162

Query: 309 LEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E LF       NP    +   +  +  +FF    + Y  G  ++
Sbjct: 163 YEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 207


>gi|221309910|ref|ZP_03591757.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314233|ref|ZP_03596038.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319156|ref|ZP_03600450.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323429|ref|ZP_03604723.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 195

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 15/187 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +T+         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIM 228
           E    I+
Sbjct: 189 EIINLII 195


>gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Rana esculenta virus]
          Length = 202

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +   +                 L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 269

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   + N       H+  K  +++   ++ +A  +E  +  + +P   +G+NA  
Sbjct: 145 GLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAEL 198

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 199 MAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 255


>gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 120

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S   + ++RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+AL
Sbjct: 29  SAAASQQRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIAL 88

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
           WK  NGLT+DER +++RNLGFF +++SL ANN
Sbjct: 89  WKDPNGLTEDERRIVRRNLGFFTTADSLAANN 120


>gi|297520407|ref|ZP_06938793.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
          Length = 225

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 23  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 82  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182


>gi|328553048|gb|AEB23540.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
          Length = 195

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 15/187 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +            D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVLIYKAVQK---------NDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIM 228
           E    I+
Sbjct: 189 EIINLII 195


>gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus
           phage SA1]
          Length = 357

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 125/338 (36%), Gaps = 23/338 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
            L         L   Y   +E Y       W   E P +     ++S          ++ 
Sbjct: 8   FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVML 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L +   +++ VA ++  A    +S+      +++Q+  E +H+ T+  I+     +  
Sbjct: 65  EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124

Query: 144 ELFNMYREVPSITAKA-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            + +   +  ++  +            +  + Y  +    S          + +      
Sbjct: 125 TILDEINQNIAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFA 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
               EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +   +    
Sbjct: 185 VTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DE 242

Query: 253 WTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQI 307
           W K FQQ   + + +L E    E  +++    +G   VGLN     +++ + A       
Sbjct: 243 WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMF 302

Query: 308 GLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
           G+   F    E P  +M + +++ KE+N   E +   Y
Sbjct: 303 GIPRDFVAPKEPPLKYMIKKMEIDKEQNANQEQQNGAY 340


>gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
          Length = 377

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 123/323 (38%), Gaps = 23/323 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   +E Y       W   E P +     ++S          ++   L +   +++ VA 
Sbjct: 43  YPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLEILKWQWEADTQVAK 99

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           ++  A    +S+      +++Q+  E +H+ T+  I+     +   + +   +  ++  +
Sbjct: 100 SLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPETILDEINQNVAVQDR 159

Query: 159 A-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                       +  + Y  +    S          + +          EG+ F   FA 
Sbjct: 160 LKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAVTALEGISFMASFAC 219

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTM 264
             +L   +K  GIA+  Q IM DE LH    I+V+ +   +    W K FQQ   + + +
Sbjct: 220 TFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DEWQKAFQQILPEIKVI 277

Query: 265 LHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFP 321
           L E    E  +++    +G   VGLN     +++ + A       G+   F    E P  
Sbjct: 278 LDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIPRDFVAPKEPPLK 337

Query: 322 WMSEVIDLKKEKNF-FETRVTEY 343
           +M + +++ KE+N   E +   Y
Sbjct: 338 YMIKKMEIDKEQNANQEQQNGAY 360


>gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form
           gamma [Homo sapiens]
          Length = 139

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   +          L  K  +++ R ++ +A  +E  +  E +P G +G+N 
Sbjct: 15  DEGLHCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNC 67

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 68  ILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 125


>gi|333001770|gb|EGK21336.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
           [Shigella flexneri K-218]
          Length = 197

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165


>gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage Felix 01]
 gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
 gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
 gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
          Length = 357

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 125/338 (36%), Gaps = 23/338 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
            L         L   Y   +E Y       W   E P +     ++S          ++ 
Sbjct: 8   FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVML 64

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
             L +   +++ VA ++  A    +S+      +++Q+  E +H+ T+  I+     +  
Sbjct: 65  EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124

Query: 144 ELFNMYREVPSITAKA-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            + +   +  ++  +            +  + Y  +    S          + +      
Sbjct: 125 TILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFA 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
               EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +   +    
Sbjct: 185 VTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DE 242

Query: 253 WTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQI 307
           W K FQQ   + + +L E    E  +++    +G   VGLN     +++ + A       
Sbjct: 243 WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMF 302

Query: 308 GLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343
           G+   F    E P  +M + +++ KE+N   E +   Y
Sbjct: 303 GIPRDFVAPKEPPLKYMIKKMEIDKEQNANQEQQNGAY 340


>gi|221055321|ref|XP_002258799.1| Ribonucleotide reductase small subunit [Plasmodium knowlesi strain
           H]
 gi|193808869|emb|CAQ39572.1| Ribonucleotide reductase small subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 335

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 104/309 (33%), Gaps = 27/309 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D    K    +  +  
Sbjct: 17  NNDDILKENQFRWVMFPIKYKTFWSYYKEVESLFWTAEDYNFDKDK---KFLESIDKNML 73

Query: 80  LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           + +   + F++  +  V      I   +   +  PE R +   Q   E +H   +  I  
Sbjct: 74  VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           +   D  +   +           N  +Q    L    + T   + +  F   L + Y+  
Sbjct: 134 TYIPDAKQKRTII----------NKVIQLDSVLKKQKWLTELFETNIPFYNKLVLIYISK 183

Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             + F      ++      + +  +   ++ I RDE LH +F +   N       HL  K
Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLNNK 234

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              ++       A  LE  +A E +    + +     + +++++A+     +     F  
Sbjct: 235 LKYERLLDYFKMAVKLEYQFAIEMLDLSVLKIKKEQVKSFLEYLADTMLVNLKHPKYFN- 293

Query: 316 TENPFPWMS 324
           ++ PF W  
Sbjct: 294 SKYPFTWPE 302


>gi|323945044|gb|EGB41109.1| nrdB protein [Escherichia coli H120]
          Length = 197

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + +II ++  D   +F+       I  +A     Y   L   +
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165


>gi|82793227|ref|XP_727957.1| ribonucleotide reductase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484058|gb|EAA19522.1| ribonucleotide reductase, putative [Plasmodium yoelii yoelii]
          Length = 373

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 102/303 (33%), Gaps = 21/303 (6%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +  +L        + P+KY   W  Y    +  W   +     D     S +  T  + L
Sbjct: 18  NDEILKENQFRWVMFPIKYKTFWNYYKEIESLFWTAEDHNFDKDKPFLNSMDKTTLSKLL 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +                 I   +   +  PE R +   Q   E +H+  +  I  S  L
Sbjct: 78  ELFCFYSLKDLHLRDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSL 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D  +   +           +  L+Y       ++     +A+  F   L + Y+    + 
Sbjct: 138 DSKQKKEII----------DKVLKYESVFKKQNWLYNEFEANIPFYNKLILLYISK--VL 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           F  GF+ + S  + N ++         I RDE L  +F +   N       HL  K   +
Sbjct: 186 FNGGFSILASYCKENNILSSFTGVHAKIQRDEYLQGDFSVMCCN-------HLNNKLRYE 238

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
                   A  LE  +  + +   F+ +     +Q++Q++A+     +     +  ++ P
Sbjct: 239 NVLNYFKAAVELEYNFCVDMLDFDFLKITKDQVKQFLQYLADTMLLNLKYPKHYN-SKYP 297

Query: 320 FPW 322
           F W
Sbjct: 298 FAW 300


>gi|156096873|ref|XP_001614470.1| ribonucleotide reductase small subunit [Plasmodium vivax SaI-1]
 gi|148803344|gb|EDL44743.1| ribonucleotide reductase small subunit, putative [Plasmodium vivax]
          Length = 335

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 103/309 (33%), Gaps = 27/309 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D    K    +  +  
Sbjct: 17  NNDDILKENQFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDK---KFLESIDKNML 73

Query: 80  LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           + +   + F++  +  V      I   +   +  PE R +   Q   E +H   +  I  
Sbjct: 74  VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           +   D  +   +           N  +Q    L    + T   + +  F   L + Y+  
Sbjct: 134 TYIPDAKQKRVII----------NKVIQLDSVLKKQKWLTELFETNIPFYNKLVLIYISK 183

Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             + F      ++      + +  +   ++ I RDE LH +F +   N       HL  K
Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLNNK 234

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +        A  LE  ++ E +    + +     + +++++A+     +     F  
Sbjct: 235 LKYESLLDYFKMAVELEYQFSMEMLELSVLKIKKEQVKSFLEYLADTMLVNLKHPKYFN- 293

Query: 316 TENPFPWMS 324
           ++ PF W  
Sbjct: 294 SKYPFTWPE 302


>gi|32709427|gb|AAP86732.1| NrdB [Enterobacteria phage RB3]
          Length = 258

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 32/228 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189
           +A    +Y   +   +                                 K A  + L   
Sbjct: 149 RAESIGRYYDDVLIKTREWENAKEFVELAKESPDADFRLNRAIKQEAEAKRALMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLN 236
                  E + FY  FA   +  +    M G A+  ++I RDE LHL 
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLK 256


>gi|13274105|emb|CAC33823.1| ribonucleotide reductase beta-subunit [Corynebacterium glutamicum]
          Length = 201

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 83/218 (38%), Gaps = 26/218 (11%)

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            + F    E  ++  KA   L Y              + D    + +    V+ E   FY
Sbjct: 1   NDAFRWSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFY 45

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   +     +K+   A+  + I+RDE++H  +      +   +      +E ++ + 
Sbjct: 46  SGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTF 105

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
            +L++    E  Y+ +      +G      ++++++ AN+  + +G E LF   E   +P
Sbjct: 106 DLLYDLYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSP 162

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
               +   +  +  +FF    + Y  G         WD
Sbjct: 163 NILSALSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 200


>gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda]
          Length = 169

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+
Sbjct: 3   YQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFD 62

Query: 148 MYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFV 191
                  I  +A     Y   L   +        GT   +           ++ L    +
Sbjct: 63  DIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLM 122

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 123 SVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 166


>gi|225619347|ref|YP_002720573.1| ribonucleoside-diphosphate reductase subunit beta [Brachyspira
           hyodysenteriae WA1]
 gi|225214166|gb|ACN82900.1| ribonucleoside-diphosphate reductase, beta subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 356

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 128/324 (39%), Gaps = 18/324 (5%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +  A +   ++  N W   EV  + D   + S   L +D +   K N+ +    +S V +
Sbjct: 31  HEVARKLKEASEGNTWFSKEVDYKSDKTRFSS---LPEDAQRAFKLNIAYQTLMDSGVTS 87

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSITA 157
                + R +++        R A EE +H+ ++ Y +    G +  +  ++      +  
Sbjct: 88  GFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHEATDTLDLVYNDEFVKH 147

Query: 158 KAN---WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +             L +   +  T D  ++ +  L +   + E + F   F    ++   
Sbjct: 148 RMEKEVELFGNVDELCNLENSPATLDEKKQAVLKLLIGIYLLESVKFPFSFLVTFTINNN 207

Query: 215 --NKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQ-----QKSRTMLH 266
             N + G  +  + I  DE   H+  G +V+N ++ EN   +T  F+     + +R M  
Sbjct: 208 YDNAIAGFTKTIKLIAHDELNTHVPTGKNVMNILRKENEQGFTHLFKSGWFNETARAMAE 267

Query: 267 EATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324
                EI +A          G+N+   E ++++ A  R   +G+E  +   + +   W +
Sbjct: 268 FTVNEEIKWAKYLFDGYQVAGINSSVSEHFIKYWAGVRLRDLGVESPYNEKKSDVIDWFN 327

Query: 325 EVIDLKKE-KNFFETRVTEYQQGA 347
              D+ K+     ET  T YQ+GA
Sbjct: 328 SYRDINKQNAALQETTNTSYQKGA 351


>gi|258597037|ref|XP_001347439.2| ribonucleotide reductase small subunit, putative [Plasmodium
           falciparum 3D7]
 gi|254922415|gb|AAN35352.2| ribonucleotide reductase small subunit, putative [Plasmodium
           falciparum 3D7]
          Length = 335

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 27/309 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D         +  +  
Sbjct: 17  NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ---YLENIDKNML 73

Query: 80  LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           + +   + F++  +  V      I   +   +  PE R +   Q   E +H   +  I  
Sbjct: 74  VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           +   D  +   +           N  ++    L    + T   +++  +   L + Y+  
Sbjct: 134 TYIPDSKQKRVII----------NKVIELDSVLKKQKWLTEIFESNIPYYNKLVLLYISK 183

Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             + F      ++      + +  +   ++ I RDE LH +F +   N       HL  K
Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLVNK 234

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +        A  LE  ++ E +    + +       +++++ +     +     +  
Sbjct: 235 LKYEHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN- 293

Query: 316 TENPFPWMS 324
           ++ PF W  
Sbjct: 294 SKYPFSWPE 302


>gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
 gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
          Length = 294

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 18/296 (6%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           M TE   Q DL          + ER +++R L   A  E  V       +Y     PE  
Sbjct: 1   MHTEFSFQSDLQD---HALADEKERSLVERALLAIAQVELAV-KLFWARVYDRFPKPEIA 56

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           +  L  A  E  H++ + +      L   E F    E  S       AL+        + 
Sbjct: 57  EVGLTFAESEVRHANAYAH--LLELLGLEEAFGQALEGAS-------ALRDRAQALGEAL 107

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESL 233
                   +E+   LF+F    E +  ++ F  +++L R   +  GI+   +   ++E++
Sbjct: 108 RRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEENV 167

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
           H  FG++++  ++ E+P    + FQ+++  +       E A        G    +     
Sbjct: 168 HGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLFRAEEALLDWLFSAGEPALVGHRET 227

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345
            ++++   N+     GL P+F   E       W +  +   KE +FF  R   Y +
Sbjct: 228 LEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVAYAR 283


>gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
          Length = 174

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252
             E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +
Sbjct: 1   ALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEM 60

Query: 253 --WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
               +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL
Sbjct: 61  AEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGL 120

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
           +  F+   NP PW++  +     +    E  V+ Y   Q  AE+  D
Sbjct: 121 DLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 167


>gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120]
 gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
           [Shigella flexneri K-218]
          Length = 178

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252
             E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +
Sbjct: 5   ALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEM 64

Query: 253 --WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
               +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL
Sbjct: 65  AEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGL 124

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352
           +  F+   NP PW++  +     +    E  V+ Y   Q  AE+  D
Sbjct: 125 DLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 171


>gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
 gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
          Length = 184

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 76  FVGDIELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 134

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            N + D+ER  I   L FFA+S+ +V  N+V      +   E R +   Q 
Sbjct: 135 -NRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQI 184


>gi|66394974|ref|YP_240948.1| ORF025 [Staphylococcus phage G1]
 gi|62636996|gb|AAX92107.1| ORF025 [Staphylococcus phage G1]
          Length = 265

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 15/249 (6%)

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANWAL 163
           H   P+ +         E +H+ ++ +I T+L  ++   +       E   +  KA +  
Sbjct: 7   HEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIG 66

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            Y   L  P+ T   +           V     E   FY+GF   L L    +M      
Sbjct: 67  YYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSGAI 119

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
              I +DE+ H +                  K+  +++  +L      E+AY H      
Sbjct: 120 IYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYDPL 179

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTE 342
            +         Y+Q+  NR    +G E  F     NP       +D  +  +FF  +  +
Sbjct: 180 ELS---EDVINYVQYNFNRALQNLGREDYFNPEPYNPIVENQTNVDRLRNVDFFSGK-AD 235

Query: 343 YQQGAELKW 351
           Y++   +K 
Sbjct: 236 YEKSTNIKD 244


>gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
          Length = 324

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 97/306 (31%), Gaps = 32/306 (10%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D    ++         
Sbjct: 17  NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQYLEN--------- 67

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I +N+             I   +   +  PE R +   Q   E +H   +  I  +  
Sbjct: 68  --IDKNMLVKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFETYI 125

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            D  +   +           N  ++    L    + T   +++  +   L + Y+    +
Sbjct: 126 PDSKQKRVII----------NKVIELDSVLKKQKWLTEIFESNIPYYNKLVLLYISK--V 173

Query: 200 WFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
            F      ++      + +  +   ++ I RDE LH +F +   N       HL  K   
Sbjct: 174 LFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLVNKLKY 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +        A  LE  ++ E +    + +       +++++ +     +     +  ++ 
Sbjct: 227 EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN-SKY 285

Query: 319 PFPWMS 324
           PF W  
Sbjct: 286 PFSWPE 291


>gi|256111767|ref|ZP_05452742.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 190

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 8/185 (4%)

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                +       AD    + +    V  E   FY+GF   +      K+   A+  + I
Sbjct: 2   LQRKSTLILDQYHADDPLKKKI--ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 59

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           +RDE++H  +      +          +E +  +  +L E    E+ Y         +  
Sbjct: 60  IRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL-- 117

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344
                ++++ + AN+    +G E LF       NP    +   +  +  +FF    + Y 
Sbjct: 118 -TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYV 176

Query: 345 QGAEL 349
            G  +
Sbjct: 177 IGKAV 181


>gi|265993236|ref|ZP_06105793.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764106|gb|EEZ10138.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 189

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 8/184 (4%)

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
               +       AD    + +    V  E   FY+GF   +      K+   A+  + I+
Sbjct: 2   QRKSTLILDQYHADDPLKKKI--ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLII 59

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE++H  +      +          +E +  +  +L E    E+ Y         +   
Sbjct: 60  RDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL--- 116

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               ++++ + AN+    +G E LF       NP    +   +  +  +FF    + Y  
Sbjct: 117 TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVI 176

Query: 346 GAEL 349
           G  +
Sbjct: 177 GKAV 180


>gi|113951998|gb|AAP86736.2| NrdB [Enterobacteria phage T6]
          Length = 247

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 28/219 (12%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLFADPSKVFDEILLDEAIMK 148

Query: 158 KANWALQYTQT------------------------LSSPSFTTGTKDADQEFLQDLFVFY 193
           +A    +Y                           L+        K    + L       
Sbjct: 149 RAESIGKYYDDVLLKTRAWENAKDMVKYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVI 208

Query: 194 VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
              E + FY  FA   +  +    M G A+  ++I RDE
Sbjct: 209 NALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 247


>gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 328

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 22/287 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        WEK  S     W+ T +P+ ++ + W+    L ++ER +  + L   
Sbjct: 19  NWNEIEDSLDHSTWEKLTSL---FWLDTRIPVTNEKSQWED---LPENERKVFLKTLAGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           AS  +  +    + I       +         F E+VH+  +  I+      +       
Sbjct: 73  ASVATFQSERGFMVIEEGEHTQQEAAIYNNIQFIESVHAKAYNTILIGFNEPKE------ 126

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +   I A  N  L+Y        + TGT    +       V  ++ EG+  Y+G    L
Sbjct: 127 VDDILIWADNNIELKYRLDRILEVYKTGTTLQKR-------VANLILEGVLTYSGLFTPL 179

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 +   +AE  + ++ +ESLH  +          E       E +  +  +  +  
Sbjct: 180 LYWTQKRFTSVAEIIKLVLTNESLHCFYISHKFQLGFSELSQQEQTELRDWTFDLFVDLV 239

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             E+ Y  +   +          + +++  AN     +G + ++  +
Sbjct: 240 NNELNYIEQIYYR---TDWLEEVKDFIRQQANNALKSLGFDTIYPES 283


>gi|323167150|gb|EFZ52868.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           sonnei 53G]
          Length = 177

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L    D    + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQ 167
              E   +  KA    Q+ +
Sbjct: 124 WSEENAPLQRKAQIIQQHYR 143


>gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 135

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   +   I  +               ++ EA  +E  + 
Sbjct: 1   MPGLTFSNELISRDEGLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFL 51

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+ + NFF
Sbjct: 52  SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109

Query: 337 ETRVTEYQQG 346
           E R   YQ+G
Sbjct: 110 ERREANYQKG 119


>gi|213612975|ref|ZP_03370801.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 205

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 21/214 (9%)

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            +    +    E P +  KA   L +                  E L+      V  E  
Sbjct: 2   KEVDAAYAWSEENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESF 46

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   +      K+   A+  + I+RDE++H  +          +   +  +E + 
Sbjct: 47  LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKL 106

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YT 316
            +  +L E    EI Y      +   G      + ++ + AN+    +G E LF      
Sbjct: 107 FALDLLMELYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMAD 163

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NP    +   +  +  +FF    + Y  G  ++
Sbjct: 164 VNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 197


>gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 171

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WT 254
           + FY  FA   +      M G A+  + I RDE+LHL     ++N ++            
Sbjct: 1   IRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVA 60

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +E +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +
Sbjct: 61  EECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAY 120

Query: 314 K-YTENPFPWMSEVIDLK 330
              T NP PW++  +   
Sbjct: 121 PAATNNPIPWINAWLSSD 138


>gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus]
          Length = 139

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 23/159 (14%)

Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E    FN    +P +  KA+WAL +           G KDA      +  V +  
Sbjct: 1   IKDPKEREFLFNAVETLPCVKKKADWALNWI----------GNKDA---QFGERVVAFAA 47

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +         HL  K
Sbjct: 48  VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNK 100

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
             +   ++++  A  +E  +  + +P   +G+N    +Q
Sbjct: 101 PSEATVKSIIVNAVQIEQEFLTQALPVKLIGMNCDLMKQ 139


>gi|113951985|gb|AAP86733.2| NrdB [Enterobacteria phage RB61]
          Length = 251

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 32/223 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
                  E + FY  FA   +  +    M G A+  ++I RDE
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251


>gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 124

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           YIMRDE LH +FGI V  QI +E          Q  R M  E    E AYA   +    +
Sbjct: 1   YIMRDEVLHASFGIRVAKQIMLEEN---IAPDPQAIREMWDECEAAEDAYAGYILRDPIL 57

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G +        +++ANRR  QIGL   +   E   PW+ E  +L+KEKNFFET VTEYQ 
Sbjct: 58  GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117

Query: 346 GAELKWD 352
           G  L WD
Sbjct: 118 GGALNWD 124


>gi|113951975|gb|AAP86729.2| NrdB [Enterobacteria phage RB23]
          Length = 251

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 32/223 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    +      +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
                  E + FY  FA   +  +    M G A+  ++I RDE
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251


>gi|300870141|ref|YP_003785012.1| ribonucleotide-diphosphate reductase subunit beta [Brachyspira
           pilosicoli 95/1000]
 gi|300687840|gb|ADK30511.1| ribonucleotide-diphosphate reductase beta subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 359

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 137/351 (39%), Gaps = 20/351 (5%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           EK+ N++++R+         ++  + +  A +   ++  N W   EV  + D   + S  
Sbjct: 7   EKKPNLENERIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRFSS-- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L +D +   K N+ +    +S V +     + R +++        R A EE +H+ ++ 
Sbjct: 65  -LPEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYSRIAIEEVIHAESYS 123

Query: 133 YIITS----LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           Y ++     L  +  +L      V     K          L +   +  T +  ++ +  
Sbjct: 124 YGLSEVFGHLATETLDLVYNDEFVKHRMEKEVELFSCVDDLCNIENSNATLEEKKKAVLK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDES-LHLNFGIDVINQI 245
           L     + E + F   F    ++     + + G  +  + I  DE   H+  G +VI  +
Sbjct: 184 LLTGIYLLESVKFPFSFLVTFTINNSYNDAITGFTKTIKLIAHDELNTHVPTGKNVIGIL 243

Query: 246 KIENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFI 299
           + +    + + F        ++ M       EI +A      K   G+N+   E ++++ 
Sbjct: 244 RKDANQGFKELFDSGWYNDMAKEMTEFTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYW 303

Query: 300 ANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
           A  R   +G+E  +  +   +   W +   D+ K+     ET  T YQ+GA
Sbjct: 304 AGVRLKDLGVETEYLKEPKSDIIDWFNAYRDINKQNAALQETTNTSYQKGA 354


>gi|113951972|gb|AAP86728.2| NrdB [Enterobacteria phage RB14]
          Length = 251

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 32/223 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189
           +A    +Y   +   +       AD E+                            L   
Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
                  E + FY  FA   +  +    M G A+  ++I RDE
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251


>gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus]
          Length = 150

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA+WAL++                 +    +  V +   EG++F   FA IL L
Sbjct: 1   MPCVKKKADWALRWI-------------GDKEAAYGERVVAFAAVEGIFFSGSFASILWL 47

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   M G+    + I RDE LH +F   +         HL  K  +Q+ + ++  A  +
Sbjct: 48  KKRGLMPGLTFSNELISRDEGLHWDFACLMFK-------HLAHKPSEQRVKEIITTAVRI 100

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296
           E  +  E +P   +G++    +QY+
Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125


>gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 237

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 82/237 (34%), Gaps = 18/237 (7%)

Query: 117 LLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           + +  F E VH+ ++  + ++L    D    F             N A Q  + +   ++
Sbjct: 1   MKQIGFMEEVHAKSYSSVFSTLFGSEDIDGAFAWVEN--------NKATQVKKLVFDEAY 52

Query: 175 TTGTKDADQEFLQDLFV--FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                +  +       +    V+ E   FYTGF   L      K+   A+  + IMRDE 
Sbjct: 53  DISDYNDRRVEYYGAIIRASSVLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEG 112

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           +H  +      ++            +++   +     + EI    E      +       
Sbjct: 113 VHGYYLGYKFQKVMEGALPYERDAVKERVTNLACRLFVNEIPLIEEIYEPLGLSAQ---V 169

Query: 293 EQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           + ++++  N+    +GLE +F        P       +D ++  +FF    + Y  G
Sbjct: 170 QTFLRYNLNKAMQNLGLENVFPAEMTRVEPRILSQLSVDSEETHDFFSGSGSSYVIG 226


>gi|209877300|ref|XP_002140092.1| ribonucleoside-diphosphate reductase beta subunit family protein
           [Cryptosporidium muris RN66]
 gi|209555698|gb|EEA05743.1| ribonucleoside-diphosphate reductase beta subunit family protein
           [Cryptosporidium muris RN66]
          Length = 357

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 95/313 (30%), Gaps = 30/313 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD--LALWKSKNGLTDDE 78
            + +L        L P+KY   W  Y       W    +    D  +     +  +   E
Sbjct: 14  QETILLDNPFRWVLFPIKYNRLWNFYKKYEVVFWTAEVISYIKDLGIISEVDRRFVDSIE 73

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
            L   R        +S++           +  PE R Y       E ++   F   I  +
Sbjct: 74  LLFSSRVFISNTGLDSVLVAC---EFLSQIQVPEARGYFSFTICMENIYKEVFMNYIDVI 130

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
              + E     +E     AK  + L+    ++         +   + L     F    E 
Sbjct: 131 RKYKSEN---IKEYDHKEAKMRYHLKLKDIITDNQHYQRKIEFANQLLDSSVPFS---EK 184

Query: 199 MWFYT----GFAQILSLGRAN-------KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  YT     F+  + L R +        +  + +    I RDE     F + +   +K 
Sbjct: 185 LIIYTIIKRVFSSGIHLIRQSFFNKEGPVLEQLCDALDRIRRDELFQAEFCLSIARSMK- 243

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                 TK   +   +ML  A  +E  +         + +       Y+ F A+    ++
Sbjct: 244 ------TKPSNEYIISMLENAITIEKGFIFSIFNLEILEIPREDIVAYLLFSADEILVEL 297

Query: 308 GLEPLFKYTENPF 320
                F  + NPF
Sbjct: 298 KYPRHFNVS-NPF 309


>gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 155

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149

Query: 158 KANWA 162
           +A   
Sbjct: 150 RAKDI 154


>gi|68068657|ref|XP_676239.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
           ANKA]
 gi|56495842|emb|CAH97095.1| ribonucleotide reductase small subunit, putative [Plasmodium
           berghei]
          Length = 299

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 98/291 (33%), Gaps = 28/291 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            + P+KY   W  Y    +  W   +     D     S + +T  + L +          
Sbjct: 1   VMFPIKYKTFWNYYKE-ESLFWTAEDHNFDKDKPFLNSMDKITLSKLLELLYLHLC---- 55

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
                  I   +   +  PE R +   Q   E +H+  +  I  S   D  +   +    
Sbjct: 56  --DEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSSDSKQKKEII--- 110

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SL 211
                  +  L+Y       ++     +A+  F   L + Y+    + F  GF+ +    
Sbjct: 111 -------DKVLKYESVFKKQNWLYSEFEANIPFYNKLILLYISK--VLFNGGFSILASHC 161

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
              N +      ++ I RDE L  +F +   N       HL  K   +        A  L
Sbjct: 162 KENNILSCFTGVHEKIQRDEYLQGDFSVMCCN-------HLNNKLKYESVLYYFKSAVEL 214

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           E  +  + +   F+ +     +Q++Q++A+     +     F  ++ PF W
Sbjct: 215 EYNFCVDMLDFNFLKITKEQVKQFLQYLADTMLLNLKYPKHFN-SKYPFTW 264


>gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti]
 gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti]
          Length = 244

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DLA W+    L   E+  I   L FF +S+  +  N+V    + L   E R + 
Sbjct: 142 EVDLSKDLADWE---KLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFY 198

Query: 118 LRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKAN 160
             Q   E VHS  +  +I +   D      LFN    +P +  KA 
Sbjct: 199 GFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKAE 244


>gi|296127719|ref|YP_003634971.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
 gi|296019535|gb|ADG72772.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
          Length = 357

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 127/325 (39%), Gaps = 19/325 (5%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +  A +   ++  N W   EV  + D   + S   L +D +   K N+ +    +S V +
Sbjct: 31  HEIARKLKEASEGNTWFSKEVDYKSDKTRFSS---LPEDAQRAFKLNIAYQTLMDSGVTS 87

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSITA 157
                + R +++        R A EE +H+ ++ Y +    G    E  ++      +  
Sbjct: 88  GFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHQASETLDLVYNDEFVKH 147

Query: 158 KAN---WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +             L +   +  + D  ++ +  L +   + EG+ F   F    ++  +
Sbjct: 148 RMEKEVELFGNVDELCNLENSNASLDEKKQAVLKLLIGIYLLEGIKFPFSFLVTFTINNS 207

Query: 215 --NKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQ-----QKSRTMLH 266
             N + G  +  + I  DE  +H+  G +++  ++ E    ++  F+       +R M  
Sbjct: 208 YDNAIAGFTKTIKLIAHDELNVHVPTGKNLMTILRKEAHQGFSHLFKNGWFYDTARAMTE 267

Query: 267 EATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWM 323
                EI +A      K   G+N+   E ++++ A  R   I +E  +  +   +   W 
Sbjct: 268 YTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYWAGIRLKDIDVETEYLSEKKSDIIDWF 327

Query: 324 SEVIDLKKE-KNFFETRVTEYQQGA 347
           +   D+ K+     ET  T YQ+GA
Sbjct: 328 NSYRDINKQNAALQETTNTSYQKGA 352


>gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 151

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/85 (57%), Positives = 62/85 (72%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV M  
Sbjct: 67  AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126

Query: 64  DLALWKSKNGLTDDERLMIKRNLGF 88
           D+ALWK+  GLTDDER ++ RNLGF
Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGF 151


>gi|256111772|ref|ZP_05452743.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|265993237|ref|ZP_06105794.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764107|gb|EEZ10139.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 138

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%)

Query: 17  VNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +N+  K     R       + N++   K    W        N W+P +VP+ +D+  W++
Sbjct: 1   MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET 57

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +  R        +++      + +      P     L   +F EAVH+ +
Sbjct: 58  ---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARS 114

Query: 131 FQYIITSLGLDEGELFNMYREVPS 154
           +  I ++L L    + + YR    
Sbjct: 115 YSSIFSTLCLTPD-VDDAYRWSEE 137


>gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 317

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 14/205 (6%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN-- 110
            W P ++    D   W+   G+ + ER +I R    F + E  V  +++  I        
Sbjct: 36  TWDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVAREGR 92

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    FEEA H+  F+  +  +  +  +L        S+  K ++   + + L 
Sbjct: 93  LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL--------SVFHKDHYRKIFYEYLP 144

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMR 229
                     + +   +    + +V EG+   TG+     +L + NK+ G+ +  + + R
Sbjct: 145 QAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQR 204

Query: 230 DESLHLNFGIDVINQIKIENPHLWT 254
           DES H+ +G  +++++  EN H+W 
Sbjct: 205 DESRHIGYGTYLLSRLISENAHIWD 229


>gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
 gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
          Length = 296

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P E+    D   WK+   LT D++ +I +    F + E  V  +++  I    S    
Sbjct: 31  WDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAGEEAVTRDLLPLIRVVASEGRL 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   YL    FEEA H+ +F+  +  +          YR   +I  K N+   + + L  
Sbjct: 88  EEEMYLTTFLFEEAKHTESFRLFLDEV--------AEYRGDLAIYHKENYKKVFYEYLPQ 139

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
                    + +   +    + ++ EG+   TG+     +LGR  KM G+ +  +Y+ RD
Sbjct: 140 AMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSNALGRQGKMPGLLKAVEYLKRD 199

Query: 231 ESLHLNFGIDVINQIKIENPHLW 253
           ES H+ +G  +++++  EN ++W
Sbjct: 200 ESRHIGYGTYLLSRLIAENENVW 222


>gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
          Length = 317

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 14/204 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P ++    D   WK    + + ER +I R    F + E  V  +++  I         
Sbjct: 37  WDPRDIDFSKDKEDWK---AMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVAREGRL 93

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   YL    FEEA H+  F+  +  +  +  +L        S   K ++   + + L  
Sbjct: 94  EEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDL--------STFHKDHYRKIFYEYLPQ 145

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230
                    + +   +    + +V EG+   TG+     +L + NK+ G+ +  + + RD
Sbjct: 146 AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQRD 205

Query: 231 ESLHLNFGIDVINQIKIENPHLWT 254
           ES H+ +G  +++++  EN ++W 
Sbjct: 206 ESRHIGYGTYLLSRLISENEYIWD 229


>gi|84997706|ref|XP_953574.1| ribonucleoside reductase [Theileria annulata]
 gi|65304571|emb|CAI72896.1| ribonucleoside reductase, putative [Theileria annulata]
          Length = 332

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 30/322 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +D+ +L    +   + P+++   W  Y    NN W   +    DD+   K    L     
Sbjct: 16  NDEILLKENHNRWVMFPIEHDTFWILYKEVENNFWAAEDFIFTDDI---KLLYQLPKPIF 72

Query: 80  LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
             +   L F  + ++ +    V   L +   +   E R +   Q  +E +H+ T   +  
Sbjct: 73  NTLLNLLSFHINLDNKLICRPVDITLDLLSEVQIAEARAFYGFQLTDENIHTETISSMF- 131

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                  +LFN   +   +++   +   Y             +  + +      +  V+ 
Sbjct: 132 -------QLFNQQLDTNIVSSNTLFLSSYGM---DKIIWLYNECENNKCFFKRVLLLVIM 181

Query: 197 EGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           + + FY     +   L +   +      +  I  D  +H  F       ++        K
Sbjct: 182 K-LLFYCSINILRDYLLKEKLLPTFITAFDSITNDRIIHTRFAHCTFRLLQ-------NK 233

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + +   ++ +A  LE  +  +     F  L+    + Y+++I N      G + L+  
Sbjct: 234 MLESEVLEIIKQALKLEYQFILQYFTIQFFNLSTNVIKSYLEWIGNNILLVCGYKTLY-T 292

Query: 316 TENPFPWMSEVI---DLKKEKN 334
           +E    W++  I   +++K+ N
Sbjct: 293 SEFDIDWLNHPIIDLNIQKQTN 314


>gi|74419022|gb|ABA03237.1| ribonucleoside diphosphate reductase small subunit [Enterobacteria
           phage LZ7]
          Length = 244

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 32/216 (14%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E    + +  W P EV +  D A +   N L   ++ +   NL + +  +S+  
Sbjct: 32  RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    ++    F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 89  RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYADPSKVFDEIVLDKAIMK 148

Query: 158 KANWALQYTQTL----------------------------SSPSFTTGTKDADQEFLQDL 189
           +A    +Y   +                            +S +     K    + L   
Sbjct: 149 RAESIGRYYDDVLDKTRIWENAKENFSYFAENEYDLEAYSNSLTHLEECKRDLMKSLYLC 208

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQY 224
                  E + FY  FA   +  +    M G A+  
Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGHAKIM 244


>gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii]
          Length = 87

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   EV +  D+A W+S   L  DER  I   L FFA+S+ +V  N
Sbjct: 1   PDIWQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNEN 57

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           +V    + +   E R +   Q   E +HS 
Sbjct: 58  LVERFSKEVQVTEARFFYGFQIAIENIHSE 87


>gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus
           castenholzii DSM 13941]
 gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941]
          Length = 295

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 108/257 (42%), Gaps = 16/257 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P+++    D+  W++   LTDDER ++ R    F + E  V  +++  +    +    
Sbjct: 33  WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    +EEA H+  F   +T +    G+L + +         AN+     + L +
Sbjct: 90  EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYHT--------ANYRALIHEALPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230
                    + +        + ++ EG+   TG+      L R N M G  +    + +D
Sbjct: 142 AMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLKQD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A         GL+  
Sbjct: 202 ESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 259

Query: 291 SCEQYMQFIANRRCHQI 307
              Q+      RR  +I
Sbjct: 260 DFMQFAMGQFERRLDRI 276


>gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp.
           RS-1]
 gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1]
          Length = 297

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 16/257 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P+++    D+  W++   LT DER ++ R    F + E  V  +++  +    +    
Sbjct: 32  WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    +EEA H+  F   +T +    G+L + +          N+     + L +
Sbjct: 89  EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYHTS--------NYRALIHEALPA 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230
                    + +        + ++ EG+   TG+      L R + M G  +    + +D
Sbjct: 141 AMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLKQD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A         GL+  
Sbjct: 201 ESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 258

Query: 291 SCEQYMQFIANRRCHQI 307
               +      RR  +I
Sbjct: 259 DFMHFAMGQFQRRLDRI 275


>gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
 gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 19/245 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
            L++R   + +LP++    + K        W P ++ +  D   W+    L +D R  ++
Sbjct: 11  TLSSRGLRHDILPMR---LYHKAKKL--GTWDPRDIDLSQDCQDWQQ---LAEDPRTRLR 62

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             +  F + E  V  +++  I         E   +L    +EE  H+  F+ I+      
Sbjct: 63  NLILSFQAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILD----- 117

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E+     ++  +    N    ++  L        T  +     +   ++ ++ EG+  
Sbjct: 118 --EVMQAEGDLHGVRTANNTRDLFSDDLPREMNLLLTDPSPVNQARASVLYNMIVEGVLA 175

Query: 202 YTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
            TG+     L  + N M G+ +  QYI RDES H+ +G+ +I+++  ++  LW    + +
Sbjct: 176 ETGYFSFFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLW-PIVEDR 234

Query: 261 SRTML 265
              + 
Sbjct: 235 MNELF 239


>gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas
           phage JG004]
          Length = 348

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 111/308 (36%), Gaps = 26/308 (8%)

Query: 38  KYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           KY    E          W  +E+ ++ D    K    L   +   +K  L  F   E +V
Sbjct: 30  KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
                +  + R    PE +         E AVH+  +  I   LG+D    +  Y++ P 
Sbjct: 88  GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  + +W                    D++ +  + +F  + E    ++ FA + S    
Sbjct: 148 LMGRMDWLES--------------VLGDEDDVLSVIIFS-LTETALLFSSFAILKSFQCN 192

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ--QKSRTMLHEATL 270
               +  IA        DE LH     ++INQ   E     +++ +  +K R  +     
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
            E       +P G +   +A + + ++++  N  C ++GLE  F+  + P   W      
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312

Query: 329 LKKEKNFF 336
             K  +FF
Sbjct: 313 AYKMIDFF 320


>gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 134

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           IK  L FFA+S+ +V  N+V      +   E + +   Q   + 
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126


>gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
 gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
          Length = 348

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 116/325 (35%), Gaps = 31/325 (9%)

Query: 38  KYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           KY    E          W  +E+ ++ D    K    L   +   +K  L  F   E +V
Sbjct: 30  KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
                +  + R    PE +         E AVH+  +  I   LG+D    +  Y++ P 
Sbjct: 88  GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  W                    D++ +  + +F  + E    ++ FA + S    
Sbjct: 148 LMGRMEWLES--------------VLGDEDDVLSVIIFS-LTETALLFSSFAILKSFQCN 192

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ--QKSRTMLHEATL 270
               +  IA        DE LH     ++INQ   E     +++ +  +K R  +     
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252

Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
            E       +P G +   +A + + ++++  N  C ++GLE  F+  + P   W      
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312

Query: 329 LKKEKNFFE-TRVTEYQQGAELKWD 352
             K  +FF      EY    EL WD
Sbjct: 313 AYKMIDFFTPGMGMEY----ELGWD 333


>gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 130

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           IK  L FFA+S+ +V  N+V      +   E + +   Q   + 
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126


>gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis
           T2Bo]
 gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative
           [Babesia bovis]
          Length = 329

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 37/292 (12%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   ++ +L   ++   + P+ Y   W  Y    N+ W   +    ++   + S   L  
Sbjct: 16  LEQHNETLLKENANRWVMFPIHYDALWAMYKEIENSFWAAEDFRFANERDTYSS---LPT 72

Query: 77  DERLMIKRNLGF---FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           + R ++ + + +      SE      I L +      PE R +   Q   E +HS  F  
Sbjct: 73  ELRQLVVKLISYHNRLDRSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGI 132

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           + +++            +VP   AK  W                T++        + V  
Sbjct: 133 MSSAIPGT--------IDVPEADAKIEWL---------------TRNLTSTSCFYIKVIL 169

Query: 194 VVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
                  F + F  +   L  + K+  +      + +D S+HL F +  +  +K+     
Sbjct: 170 QCISKAIFRSAFGILADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL----- 224

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
             +  ++    +L+ A  LE+AY    +P   +GL+     QY++   N+  
Sbjct: 225 --RPTRETVMELLNSAYDLEMAYCRSVLPMDHMGLSEYHLSQYIKNNVNQCL 274


>gi|227902816|ref|ZP_04020621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus ATCC 4796]
 gi|227869479|gb|EEJ76900.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus ATCC 4796]
          Length = 326

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 29/295 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    R  +       
Sbjct: 10  NWNDMEDKVDKSAWARLNDII---WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   + +  I      PE    L    + E++ + ++ Y++  L   E     F+
Sbjct: 64  SFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDNAFD 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  K +   +  Q   +     G                V+ E   +++GF  
Sbjct: 124 WANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSGFFA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +      ++ +     +  E
Sbjct: 169 PLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNLYDE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
               E  +    +     G    +   YM +  N+    +G    +  T    NP
Sbjct: 229 LVKNEEKHIR--LLYKGTGWTEDAL-HYMYYSVNKAYLNLGFPGKYPDTSDTINP 280


>gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
          Length = 139

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHE 267
            ++    KM  +    + ++ DESLHL  GI+ I  I  ENP +     F +  R  + +
Sbjct: 1   FAMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIID 60

Query: 268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           A  LE+ Y         + G++    E YM++IA+RR  ++G +P F   +NP  ++ + 
Sbjct: 61  AVELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE 120

Query: 327 IDLKKEKNFFETRVTEYQ 344
            D+KK  NFFE   TEY 
Sbjct: 121 -DVKKLTNFFEVSSTEYT 137


>gi|58338007|ref|YP_194592.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus NCFM]
 gi|58255324|gb|AAV43561.1| ribonucleotide reductase [Lactobacillus acidophilus NCFM]
          Length = 311

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 29/295 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    R  +       
Sbjct: 10  NWNDMEDKVDKSAWARLNDII---WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   + +  I      PE    L    + E++ + ++ Y++  L   E     F+
Sbjct: 64  SFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDNAFD 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  K +   +  Q   +     G                V+ E   +++GF  
Sbjct: 124 WANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSGFFA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +      ++ +     +  E
Sbjct: 169 PLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNLYDE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
               E  +    +     G    +   YM +  N+    +G    +  T    NP
Sbjct: 229 LVKNEEKHIR--LLYKGTGWTEDAL-HYMYYSVNKAYLNLGFPGKYPDTSDTINP 280


>gi|71034151|ref|XP_766717.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
           strain Muguga]
 gi|68353674|gb|EAN34434.1| ribonucleotide-diphosphate reductase small subunit, putative
           [Theileria parva]
          Length = 326

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 40/301 (13%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +D+ +L    +   + P+++   W  Y    NN W   +    DDL    S   L     
Sbjct: 20  NDEILLKENHNRWVMFPIEHDTFWIMYKEVENNFWAAEDFIFSDDL---NSLFKLPKPLF 76

Query: 80  LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
             +   L F  + ++      V   L +   +   E R +   Q  +E +H+ T   +  
Sbjct: 77  NSLFHLLSFHINLDNKWVCRPVDMTLELLSEVQIAEARAFYGFQLTDENIHTETIGTMFQ 136

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            L                             T+     T    + ++       V  VV 
Sbjct: 137 LLNQPLD-----------------------NTIGQDKITWLYNECEKNKCFFKRVLLVVI 173

Query: 197 EGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             + F   F  +   L +   +         + +D  +H  F       ++        K
Sbjct: 174 SKLLFTATFNILRDYLVKEKLLPTFTLALDAVSKDRHIHTRFAHCTFTLLQ-------HK 226

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPL 312
             +     ++ EA  LE  +A++ +P   + +          YM+++ N      G   L
Sbjct: 227 MLESDVVQLIKEALKLEYDFANKFLPLSLMAITQMLTDVLRGYMEWVGNNVLMVCGYRTL 286

Query: 313 F 313
           +
Sbjct: 287 Y 287


>gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 82

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y     + W   E+ +  DL  W++   LT +E+  IK  L FFA+S+ +V  N+     
Sbjct: 1   YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFS 57

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHT 130
             +  PE R +   Q   E +HS T
Sbjct: 58  CEVQIPEARAFYGFQTGMETIHSET 82


>gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ]
 gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ]
          Length = 387

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 127/355 (35%), Gaps = 31/355 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
             +     I    K      + +L     +   +   Y   WE Y       W   E   
Sbjct: 3   TKSQLPKKIFNVAKSDYHLPEIILGDDPGLLDSIHTHYPKMWELYKRLKMLDWDELEFDF 62

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
              L  +++ +  T D   M+ + L +   ++S+ + +IV  +   +++       +R  
Sbjct: 63  STCLVEFETCDKSTYD---MMIKTLAWQWEADSVASRSIVNILSPVMTDSRVWAGYVRIN 119

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS--PSFTTGTK 179
             E VH+ T+  I+ +   D   + +    V     +     +          ++     
Sbjct: 120 DNEDVHALTYSEIVRNSFKDPKVILDEILRVEEAQERMVAVARTMGEAHDAVHAYALNQV 179

Query: 180 DADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHL 235
             DQE    +F+F++     E + F   FA   ++GR      IA   + I +DE  +H 
Sbjct: 180 PNDQELYNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHA 239

Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSC 292
            +G +VI  +   E   L   + + K   +L E    E+ + +    +G    G+NA   
Sbjct: 240 QYGQEVIRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKL 299

Query: 293 EQYMQFIANRRCHQI------------------GLEPLFKYTENPFPWMSEVIDL 329
             ++ F AN     +                  G + ++   +NP  +M + +D+
Sbjct: 300 INWVLFNANAAATFLSIENDVVEQYQVEFKESAGFDFVWPE-KNPLLYMEDYLDI 353


>gi|312601198|gb|ADQ90453.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 168]
          Length = 223

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 123 EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
              VH+ ++  I ++L   E   E  N       +  +A   + +               
Sbjct: 1   MVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYV------------- 47

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E      V   +  G   Y GF     L   +K+   ++  + I+RD+ +H  +   
Sbjct: 48  --GEDPLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGY 105

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
              +   +       E ++ +  +L++   LE  Y ++   +  +   A S  ++  + A
Sbjct: 106 KFQKKVEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGL---AESAIKFSIYNA 162

Query: 301 NRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            +    +G +  F   E    P  +        +  +FF    + Y     
Sbjct: 163 GKFLQNLGYDSPFSKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMALA 213


>gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 150

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 16/144 (11%)

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----- 173
             AF E +HS ++ +II ++  D   +F+       I  +A     Y   L   +     
Sbjct: 2   TWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHL 61

Query: 174 FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
              GT   +           ++ L    +     E + FY  FA   +      M G A+
Sbjct: 62  LGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAK 121

Query: 223 QYQYIMRDESLHLNFGIDVINQIK 246
             + I RDE+LHL     ++N ++
Sbjct: 122 IIRLIARDEALHLTGTQHMLNLLR 145


>gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus]
          Length = 103

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  T 
Sbjct: 1   EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 60  NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 90


>gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
 gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
          Length = 359

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 21/256 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDV---NQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           TG+S    G               S     + L P++    + K        W P  + +
Sbjct: 4   TGVSGAADGRPVAAEARHDAFVTTSRRGLNHDLPPMR---LYHKAKKF--GTWDPRAIDL 58

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLR 119
           + D   WK    L D ++  + R +  FA+ E  V  +++  I         E   +L  
Sbjct: 59  RQDKEDWK---LLNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIAREGRLEEEMFLTT 115

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
             +EEA H+   +  +  +    GE  + Y              Q    L          
Sbjct: 116 FLWEEAKHTEFMRRFLDEVAGVSGEDLHHYHTPSYKKIFYEELPQAMNRLLDDP------ 169

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDESLHLNFG 238
            +     +    + ++ EG+   TG+      L R   M G  +  +   RDES HL +G
Sbjct: 170 -SPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFVQGIRNFQRDESRHLAYG 228

Query: 239 IDVINQIKIENPHLWT 254
           + ++ ++   +  +W 
Sbjct: 229 VFLLQRLVAADDSIWN 244


>gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp.
           Y-400-fl]
 gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl]
 gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl]
          Length = 297

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 22/263 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P+ + +  D+  W+    L D+ER ++ R    F + E  V  +++  I         
Sbjct: 32  WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDLLPLIRTIAREGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   YL    FEEA H+  F   I+ +   + +L        S    A++     + L +
Sbjct: 89  EEELYLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTASYRALIYEALPA 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230
                    +     +    + ++ EG+   TG+    + L   + M G  E  + + +D
Sbjct: 141 ALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES H+ +G+ +++++   +P +W    ++ +  +L+   +++  +A        +  N  
Sbjct: 201 ESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACY----DPMPFNLQ 256

Query: 291 SCEQYMQFIAN---RRCHQIGLE 310
             E +  F  N   RR +++ L 
Sbjct: 257 -IETFSTFALNQFQRRLNRLELA 278


>gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 138

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WEK        W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKAN 160
                  +  K  
Sbjct: 123 WTNNNEYLQKKDQ 135


>gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 65

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 47/61 (77%)

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L W
Sbjct: 5   MEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSW 64

Query: 352 D 352
           D
Sbjct: 65  D 65


>gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus]
          Length = 215

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 23/211 (10%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W   E    DD+  +   + L  +     +    F ++++  V  N+   + +   
Sbjct: 21  IKNRWAEDEFMYTDDIKDF---SRLDPEALDFYRFIFTFLSAADDKVNINL-DQLKQLFP 76

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSITAKANWALQY 165
             +   Y   Q   E VHS T+  +  +L  ++ +    Y E     P+I  K +W    
Sbjct: 77  QKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDWL--- 133

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       TK  + E + + ++  ++ EG++F   FA I  L        +     
Sbjct: 134 -----------NTKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSND 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            I RDE++H      + N    ++  + T E
Sbjct: 183 LISRDEAIHTQASCCIFNNYLKDH-EMPTDE 212


>gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
 gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
          Length = 349

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 95/262 (36%), Gaps = 24/262 (9%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKR-----MLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
           +    G +P + G  R  V   R       ++R   + L P++    + K        W 
Sbjct: 5   VTPGAGAAP-EPGRGRPAVAAARHDAFTTTSSRGLNHDLPPMR---LYHKAKKF--GTWD 58

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PEC 113
           P  + +  D   W   N L D ++  + R +  FA+ E  V  +++  I         E 
Sbjct: 59  PRAIDLSQDREDW---NLLNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIAREGRLEE 115

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
             +L    +EEA H+   +  +  +    G   + Y   PS          + + L    
Sbjct: 116 EMFLTTFLWEEAKHTEFMRRFLDEVAGVSGADLHHYHT-PSYRK------IFYEELPRAM 168

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDES 232
                  +     +    + ++ EG+   TG+      L R   M G  +  +   RDES
Sbjct: 169 NRLLEDPSPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFIQGIRNFQRDES 228

Query: 233 LHLNFGIDVINQIKIENPHLWT 254
            HL +G+ ++ ++   +  +W 
Sbjct: 229 RHLAYGVFLLQRLVAADDAIWQ 250


>gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp.
           8437]
          Length = 295

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN-- 110
            W P ++    D   W + N +   E+ M  R    F   E  V  +++  I    +   
Sbjct: 29  TWDPKDIDFSQDRKDWATFNEI---EKGMSLRLNSVFLGGEEAVTKDLLPLIQVIANEGR 85

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            E   YL    +EEA H   F+ ++  LG+             SI    N+   + + L 
Sbjct: 86  LEEEMYLTTFLWEEAKHVEVFRRMVDELGITGDL---------SIYHSDNYKKIFYEYLP 136

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ-ILSLGRANKMVGIAEQYQYIMR 229
                     + +   +    + ++ EGM   TG+    +S  R   M G  + ++Y+ R
Sbjct: 137 EAMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSYKRLGIMPGTVQAFEYLKR 196

Query: 230 DESLHLNFGIDVINQIKIENPHLWT 254
           DES H+ +G+ +++++  E+ H+W 
Sbjct: 197 DESRHICYGVYLLSRLIAEHDHIWD 221


>gi|126649263|ref|XP_001388304.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
           II]
 gi|126117398|gb|EAZ51498.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
           II]
          Length = 339

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 98/320 (30%), Gaps = 31/320 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG--LTDDE 78
           ++ +L        L P+KY   W  Y     + W    +   +D     + +   L   E
Sbjct: 14  NESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKTKLMNMDEKLLDYIE 73

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
               KR        ++++   +   +   +  PE R Y       E ++   F   +  +
Sbjct: 74  MAFAKRIYIDNTCLDTVL---LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEMI 130

Query: 139 GLDEGE-------------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             ++ +               N               L   +  +      G    +   
Sbjct: 131 RKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTL 190

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGID 240
             +  ++YV+ + ++  +     LS    N         + +    I RDE   + F + 
Sbjct: 191 FSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLS 250

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +K       TK    +   +L +A +LE  +    +    + +       ++ F A
Sbjct: 251 IAKSMK-------TKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNA 303

Query: 301 NRRCHQIGLEPLFKYTENPF 320
           +     +     F  + NPF
Sbjct: 304 DEILVDLKYPRQFNVS-NPF 322


>gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aggregans DSM 9485]
 gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485]
          Length = 297

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 18/261 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P+ +    D+  W   N L+D+ER ++ R    F + E  V  +++  I     +   
Sbjct: 32  WNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPLIKAIAHDGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    FEEA H+  F   I+ +   + +L       PS  A    AL        
Sbjct: 89  EEELFLTTFLFEEAKHTDFFARFISEVARVDPDLSRY--HTPSYRALIYDALPRAMQRLE 146

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230
              +           +    + ++ EG+   TG+    + L   N M G+ E  + + +D
Sbjct: 147 HDPSPF------NLAEASLTYNMIVEGVLAETGYHGYFTILDTHNLMPGVREGIRLLKQD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGLNA 289
           ES H+ +GI +++++   +  +W    ++ +  ++H   +++  +  ++TMP G      
Sbjct: 201 ESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDTMPFGL---QI 257

Query: 290 PSCEQYMQFIANRRCHQIGLE 310
            +   +      RR +++ L 
Sbjct: 258 ETFSTFALNQFQRRLNRLELA 278


>gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
 gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
          Length = 155

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 62  FVGDVELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 120

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
            N + D+ER  I   L FFA+S+ +   N+V      
Sbjct: 121 -NRMNDNERHFISHVLAFFAASDGI-HENLVERFSNE 155


>gi|323167149|gb|EFZ52867.1| ribonucleoside-diphosphate reductase 2 subunit beta domain protein
           [Shigella sonnei 53G]
          Length = 150

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E 
Sbjct: 1   MYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLEL 60

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSE 325
              E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    + 
Sbjct: 61  YDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAAL 117

Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
             +  +  +FF    + Y  G  ++
Sbjct: 118 SPNADENHDFFSGSGSSYVMGKAVE 142


>gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639]
          Length = 308

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 24/280 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P+ + +  D A W   + L D ++ ++      F + E
Sbjct: 25  LFPMK------LYQLGKKLFWDPSTIDLTQDRADW---DKLRDIDKFLMVNVTSKFGAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  FEEA H   F+  + ++G+ E  +      
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFIFEEAKHVEAFRRFLDAVGVKEDLVELTKDV 135

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
            P      N+A  + + L    +      + +  ++    + +V EG+    G+     +
Sbjct: 136 SP------NYAKIFYEELPKAMWNLNRDPSPENQVRAAVTYNLVVEGVAAEGGYNIFKYI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
            R  N   G+A+   YI  DES H+ FG  +I ++  E      K   +    +   A  
Sbjct: 190 TRTFNIFPGLAKMVNYIATDESRHIAFGTYLIARLIKEGGESVYKAAMEHINYLGPYAVG 249

Query: 271 LEIAYAHETMPKGF---VGLNAPSCEQYMQFIANRRCHQI 307
           +   ++   +P+G    + LN     +Y + + N R   I
Sbjct: 250 I---FSEPNVPQGVEIPLKLNPEVTVEYAKKLLNVRIQAI 286


>gi|67592960|ref|XP_665685.1| ribonucleotide reductase small subunit [Cryptosporidium hominis
           TU502]
 gi|54656484|gb|EAL35456.1| ribonucleotide reductase small subunit [Cryptosporidium hominis]
          Length = 369

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 99/320 (30%), Gaps = 31/320 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG--LTDDE 78
           ++ +L        L P+KY   W  Y     + W    +   +D     + +   L   E
Sbjct: 14  NESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKTKLMNMDERLLDYIE 73

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
            +  KR        ++++   +   +   +  PE R Y       E ++   F   +  L
Sbjct: 74  MVFAKRIYIDNTCLDTVL---LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEML 130

Query: 139 GLDEGE-------------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             ++ +               N               L   +  +      G    +   
Sbjct: 131 RKNKEKNEKTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTL 190

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGID 240
             +  ++YV+ + ++  +     LS    N         + +    I RDE   + F + 
Sbjct: 191 FSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLS 250

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +K       TK    +   +L +A +LE  +    +    + +       ++ F A
Sbjct: 251 IAESMK-------TKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNA 303

Query: 301 NRRCHQIGLEPLFKYTENPF 320
           +     +     F  + NPF
Sbjct: 304 DEILVDLKYPRQFNVS-NPF 322


>gi|289803661|ref|ZP_06534290.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           +++       ++      P     L   +F EAVH+ ++ 
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYS 106


>gi|295693640|ref|YP_003602250.1| ribonucleotide reductase [Lactobacillus crispatus ST1]
 gi|295031746|emb|CBL51225.1| Ribonucleotide reductase [Lactobacillus crispatus ST1]
          Length = 311

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++GF  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFGGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDM 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|262047451|ref|ZP_06020407.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|260572221|gb|EEX28785.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 311

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++GF  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|300362937|ref|ZP_07059107.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300352987|gb|EFJ68865.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 314

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 92/286 (32%), Gaps = 26/286 (9%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + ++          E FN   + P +  K        Q+    
Sbjct: 91  VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                      E        +V      +++ F   L L   +K+   AE  +Y +R  +
Sbjct: 147 -----------ENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +   +      +        +       E+ + H       +       
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGLE---DKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
           E Y+ +  N+    +G EP +            + +++    ++FF
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298


>gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 106

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF
Sbjct: 7   IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 65

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L+ + NFFE R   YQ+G
Sbjct: 66  DFM-ENISLQGKTNFFERREANYQKG 90


>gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group]
 gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group]
          Length = 162

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV +YQ+ 
Sbjct: 83  MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140

Query: 347 AELK 350
           + + 
Sbjct: 141 SVMS 144


>gi|116630259|ref|YP_815456.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri ATCC 33323]
 gi|116095841|gb|ABJ60993.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus gasseri ATCC 33323]
          Length = 320

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 26/286 (9%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+ +D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 40  PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 96

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + +T          E FN   + P +  K        Q+ ++ 
Sbjct: 97  VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAI 156

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                               +V      +++ F   L L   +K+   AE  +Y +R  +
Sbjct: 157 QKK---------------AAHVFISTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 201

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +          K   +    +       E+ + H       +       
Sbjct: 202 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYEDTGLE---DKV 258

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
           E Y+ +  N+    +G EP +            + +++    ++FF
Sbjct: 259 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 304


>gi|329667981|gb|AEB93929.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii DPC 6026]
          Length = 313

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 21/283 (7%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D    K    L  +E+ +I  + G    S +L     +  I +   N E   
Sbjct: 34  PRRVPIYKDQ---KEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
                 + E++++  + Y++     D  +  + Y       A  N  LQ    L +  + 
Sbjct: 91  VYNALQYLESINNKAYSYVLAEF-SDSKKQEDAYE-----WANQNPYLQKKMKLLNTVYQ 144

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           +GT    +         +V      +++ F   L L   +K+   AE  +Y +R  +L+ 
Sbjct: 145 SGTTIQKK-------AAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNG 197

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
            +      +   + P    K+       +  +    E+ +         +       E Y
Sbjct: 198 IYTGIKFRRDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDLE---DKIEHY 254

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
           + +  N+    +G EP +            + +++    ++FF
Sbjct: 255 IHYTLNKALMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297


>gi|42519734|ref|NP_965664.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii NCC 533]
 gi|41584023|gb|AAS09630.1| hypothetical protein LJ_0591 [Lactobacillus johnsonii NCC 533]
          Length = 313

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D    K    L  +E+ +I  + G    S +L     +  I +   N E   
Sbjct: 34  PRRVPIYKDQ---KEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                 + E++++  + Y++        + + +    + P +  K        Q+ ++  
Sbjct: 91  VYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKLLNTVYQSGNTIQ 150

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                              +V      +++ F   L L   +K+   AE  +Y +R  +L
Sbjct: 151 KK---------------AAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTL 195

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           +  +      +   + P    K+       +  +    E+ +         +       E
Sbjct: 196 NGIYTGIKFRRDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDLE---DKVE 252

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
            Y+ +  N+    +G EP +            + +++    ++FF
Sbjct: 253 HYIHYTLNKALMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297


>gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 122

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           IK  L FFA+S+ +V  N+V      +   E + +  
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYG 119


>gi|238853136|ref|ZP_04643525.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|238834244|gb|EEQ26492.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
          Length = 330

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 26/286 (9%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + ++          E FN   + P +  K        Q+    
Sbjct: 91  VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                      E        +V      +++ F   L L   +K+   AE  +Y +R  +
Sbjct: 147 -----------ENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +   +      +        +       E+ + H               
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGFE---DKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
           E Y+ +  N+    +G EP +            + +++    ++FF
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298


>gi|311110156|ref|ZP_07711553.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri MV-22]
 gi|311065310|gb|EFQ45650.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri MV-22]
          Length = 332

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 26/286 (9%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+ +D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + +T          E FN   + P +  K        Q+ ++ 
Sbjct: 91  VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAI 150

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                               +V      +++ F   L L   +K+   AE  +Y +R  +
Sbjct: 151 QKK---------------AAHVFISTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +          K   +    +       E+ + H       +       
Sbjct: 196 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYEDTGLE---DKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336
           E Y+ +  N+    +G EP +            + +++    ++FF
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298


>gi|268320098|ref|YP_003293754.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii FI9785]
 gi|262398473|emb|CAX67487.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii FI9785]
          Length = 313

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 28/320 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +KR     ++ N +       AW +          P  VP+  D    K    L  +E+ 
Sbjct: 2   NKRPYYKANNWNTVEEQVDHSAWARLNDIVY---EPRRVPIYKDQ---KEFLHLPKNEQT 55

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139
           +I  + G    S +L     +  I +   N E         + E++++  + Y++     
Sbjct: 56  VILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSD 115

Query: 140 -LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
              + + +    + P +  K  +     Q+ ++                     +V    
Sbjct: 116 SKKQEDAYEWANQNPYLQKKMKFLNTVYQSGNAIQKK---------------AAHVFLST 160

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
             +++ F   L L   +K+   AE  +Y +R  +L+  +      +   +       +  
Sbjct: 161 GLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFKLSKKEQNKVH 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                +       E+++         +       E Y+ +  N+    +G EP +     
Sbjct: 221 DWVYDLCDNLYDNELSHIKLLYQNTDLE---DKVEHYIHYTLNKALMNLGQEPKYPENVE 277

Query: 319 PFP--WMSEVIDLKKEKNFF 336
                  + +++    K+FF
Sbjct: 278 TLDPILTTGLMESAMIKDFF 297


>gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 100

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF
Sbjct: 1   MKDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 59

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L+ + NFFE R   YQ+G
Sbjct: 60  DFM-ENISLQGKTNFFERREANYQKG 84


>gi|227878195|ref|ZP_03996169.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus JV-V01]
 gi|256844086|ref|ZP_05549573.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256850509|ref|ZP_05555936.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus MV-1A-US]
 gi|312976830|ref|ZP_07788579.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
 gi|227862226|gb|EEJ69771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus JV-V01]
 gi|256613991|gb|EEU19193.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256712714|gb|EEU27708.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus MV-1A-US]
 gi|310896158|gb|EFQ45223.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
          Length = 311

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 90/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++ F  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM
           639]
          Length = 314

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 19/240 (7%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
            D N   P+K       Y       W P ++    D   WK    L+ DE+  +   +  
Sbjct: 25  YDWNT-FPMK------LYQIGKRLFWDPAKIDFSKDKEDWK---KLSKDEKNYLLNIVSL 74

Query: 89  FASSESLVANNIVLAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
           F + E  VA +I   I   ++        YL + AFEEA H+  F+    SL +++    
Sbjct: 75  FMAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTI 134

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
                 P           + + L S  +      + +     +  + +  EG+   +G+ 
Sbjct: 135 FTTEYNPWYQK------IFYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYK 188

Query: 207 QI-LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
                    N M G+++    I  DES H+ +G  +I ++ +EN     ++  ++   ++
Sbjct: 189 TFKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLITRLIVENGESIYRKAIEQFNKLV 248


>gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus 98/2]
 gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2]
          Length = 308

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 18/225 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKRLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+    ++  +  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGKVEEVMYLEQFVYEESKHVEAFRRFFDAV--NVIEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             S     N+   + + L    +      + +  ++ +  + +V EG+    G+     +
Sbjct: 134 DLSP----NYRKIFYEELPKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRI 189

Query: 212 -GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
                 + G+A+    I  DES H+ FG+ +I ++  E+     K
Sbjct: 190 TNTRKILPGLAKMINLIATDESRHIAFGVYLIARLVKEHGEGIYK 234


>gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 144

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 225 QYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A   E  +A    
Sbjct: 1   RLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLF 60

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338
             G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E 
Sbjct: 61  RDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEV 120

Query: 339 RVTEY---QQGAELKWD 352
            V+ Y   Q  +E+  D
Sbjct: 121 EVSSYLVGQIDSEVDTD 137


>gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus P2]
 gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus L.S.2.15]
 gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.N.15.51]
 gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
 gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus
           solfataricus P2]
 gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15]
 gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14]
 gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51]
 gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
          Length = 308

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+      
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 294

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 18/218 (8%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111
           W P ++    D   WK    L ++++L +      F   E  V  +I+  I         
Sbjct: 30  WNPVDIDFTQDKEDWK---KLNEEQQLEVLTQFAQFIGGEEAVTQDILPMIMAVSKKGWF 86

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   YL    FEEA H+  F   +  +G+ +     +    P      +  L        
Sbjct: 87  EEESYLTTFLFEEAKHAEFFSLFLEEIGVKDDLTHLL---TPGYRKLFDETLPAVMG--- 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230
                    + +  +     + +  EG+   TG+     +L  AN   G     + + RD
Sbjct: 141 ---RLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALSSANLFPGFISGIRNVKRD 197

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           E  H+ FG  +I ++  ENP L   E  ++ +  L E 
Sbjct: 198 EGRHIGFGTFLIQRLISENPEL---ELFERVQQRLQEL 232


>gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4]
          Length = 308

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+      
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A]
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+      
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.14.25]
 gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.27]
 gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25]
 gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27]
          Length = 308

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+    ++ + E         
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSTYTKDL 135

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210
            P+          + + L    +      + +  ++ +  + ++ EG+    G+      
Sbjct: 136 SPNYKK------IFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.4]
 gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4]
          Length = 308

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK  N L   E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75

Query: 94  SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA ++   I   +     E   YL +  +EE+ H   F+    ++  +  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAV--NVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210
             S     N+   + + L    +      + +  +  +  + ++ EG+    G+      
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVGAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi]
          Length = 87

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +   ++P   +G+N+    QY++F+A+R    +G   +F +++NPF WM  +I L+ + N
Sbjct: 1   FLVWSLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTN 58

Query: 335 FFETRVTEYQQGAEL 349
           FFE RV +YQ+   +
Sbjct: 59  FFEKRVADYQKSGVM 73


>gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 115

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 6/112 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WEK        W+ T +P+ +DL  W+S   L+ DE+ ++    G  
Sbjct: 9   NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
              ++L + + + ++ +++   +    L    F E+VH+ ++  I ++L   
Sbjct: 63  TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTP 114


>gi|293380498|ref|ZP_06626562.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
 gi|290922932|gb|EFD99870.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
          Length = 311

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 89/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++ F  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
                  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNAKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|189490606|ref|YP_001957176.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
           phage 201phi2-1]
 gi|164609671|gb|ABY63280.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
           phage 201phi2-1]
          Length = 386

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 31/347 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           I    K      + +L     +   +   +   ++ Y    +  W   E P  D L  ++
Sbjct: 11  IFNNTKTDYNSPEIILGQEPGLFDSIHNHHPALFDLYKRLRSMDWDENEFPYGDCLHEFE 70

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           + +        M+ + L +   +++  +  IV  +   L++       +R    E +H+ 
Sbjct: 71  TCDK---QFYDMMIKTLAWQWEADATASRAIVNILGPVLTDSRVWAGYVRINDNENLHAL 127

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAK--ANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           T+  I+ +   D   +      V     +      +      +S ++   T   DQ    
Sbjct: 128 TYSEIVRNSFKDPQVILEEILRVEEAQQRLVTVAKIMGEAHDASHAYACRTIPNDQALYN 187

Query: 188 DLFVFYVV---FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-LHLNFGIDVIN 243
            +F F++     E + F   FA   +LG+      I    Q I +DE  +H  FG +VI 
Sbjct: 188 KIFKFFMALYYLERIQFMASFAVTFALGKLGMFQPIVMGVQKIAQDEYEIHAQFGQEVIK 247

Query: 244 Q-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIA 300
             +K E   +  ++ + +   +  E  + E+ +      +G    G+      Q++ F  
Sbjct: 248 ALLKTERGLIAYEDTKAECIKLFWEILMSEVNWLIYLFSEGRELPGVTLKKMVQWVLFNC 307

Query: 301 NRR------------------CHQIGLEPLFKYTENPFPWMSEVIDL 329
           N                        G E  F   +NP P+M E +DL
Sbjct: 308 NAAGTFTGHKDGITDEMRAEFLATTGFELEFP-DKNPLPYMVEYLDL 353


>gi|227894062|ref|ZP_04011867.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ultunensis DSM 16047]
 gi|227864144|gb|EEJ71565.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ultunensis DSM 16047]
          Length = 269

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 28/284 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW +        W P  VP+++D    K    L   ++  + R  G  
Sbjct: 10  NWNDMEDRVDRSAWARLNDII---WEPRHVPVKEDQ---KEFLKLDKPKQTAVLRAFGSL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
           A +  L     +  I +    PE    L    + E++ +  + Y+I  LG+D+   E F+
Sbjct: 64  ALASGLQMRIGLDQIKQDAITPEESAVLNALQYLESIANKGYSYVIHELGIDDDVQETFD 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  K +   +  Q+           DA Q+   D     VV E   ++  F  
Sbjct: 124 WANNNYYLQRKIHILNKIYQS----------GDALQKKAAD-----VVLETALYHADFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       + ++    +  +
Sbjct: 169 PLLLFGEGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGFQKLGKEEKSKLKKWIDNLFSK 228

Query: 268 ATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +E  +        G++       + Y+ +  N+    +GL 
Sbjct: 229 LVTIEEKHIEAMYKDTGWI----DDAKHYLYYSTNKAYLNLGLP 268


>gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 157

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
              TK  Q   +     A  +E  +  + +P G +G+NA    +Y++F+A+R    +G  
Sbjct: 24  ETLTKNEQHFIKN---SAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYA 80

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            ++  + NPF WM+ +I L+ + NFFE RV 
Sbjct: 81  KIYN-SANPFDWMT-MISLQGKTNFFEKRVG 109



 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
          Y     + W   E+ +  DL  W++   LT +E+  IK 
Sbjct: 1  YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKN 36


>gi|227889328|ref|ZP_04007133.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850130|gb|EEJ60216.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii ATCC 33200]
          Length = 313

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 96/307 (31%), Gaps = 39/307 (12%)

Query: 51  NNHW--MPTEVPMQ-----DDL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93
            N+W  +  +V        +D+             K    L  +E+ +I  + G    S 
Sbjct: 9   ANNWNTVEEQVDRSAWARLNDIVYEPCRVPIYKDQKEFLHLPRNEQTVILHSFGSLTLSS 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151
           +L     +  I +   N E         + E++++  + Y++        + + +    +
Sbjct: 69  TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
            P +  K        Q+ ++                     +V      +++ F   L L
Sbjct: 129 NPYLQKKMKLLNTVYQSGNAIQKK---------------AAHVFLSTGLYHSSFFGPLYL 173

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
              +K+   AE  +Y +R  +L+  +      +   +       +       +       
Sbjct: 174 FGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFKLSKKEQNKVHDWVYDLCDNLYDN 233

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDL 329
           E+++         +       E Y+ +  N+    +G EP +            + +++ 
Sbjct: 234 ELSHIKLLYQNTDLENK---VEHYIHYTLNKALMNLGQEPKYPENVETLDPILTTGLMES 290

Query: 330 KKEKNFF 336
              ++FF
Sbjct: 291 AMIEDFF 297


>gi|60416882|emb|CAD71202.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
           subtilis]
          Length = 140

 Score = 88.9 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  I
Sbjct: 26  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPII 82

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  K
Sbjct: 83  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKK 139


>gi|295398338|ref|ZP_06808380.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973477|gb|EFG49262.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 332

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 106/303 (34%), Gaps = 30/303 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WE    A +  W+ T VP+++D + W +   L   E+  + R L   
Sbjct: 27  NWNVIEDELDNVVWE---RATSLFWLDTRVPIENDRSKWAN---LQLQEQEQLNRLLILL 80

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFN 147
            +  +  +N +   I     + +    +    F E VH+  +  I++    D    + F+
Sbjct: 81  TNIATYQSNELGEIIRDSARSQQEIAIINNFQFTEMVHTKAYNRILSIFNQDIGSQKAFD 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT--GF 205
                P +           Q+               + L+  F+  +  EG+  YT   +
Sbjct: 141 WVDTNPQVRDYIEKIHMTYQS--------------ADPLKKRFMA-ICVEGILNYTYLSY 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
              L L R    + +    + I+R+ESLH  +    +N +  E       +F+     ++
Sbjct: 186 LFELWLDRN--FLNLGSMLKMIVRNESLHCYYLNYKVNLLLKEASSKQVAQFKSWGMEIV 243

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +  +L           G     A +        AN     IGL  ++ + +     ++ 
Sbjct: 244 DDFVVLADQLIDTFYTIGSSKTVAFNLVMQE---ANHILAGIGLNEIYAFNQENIAAINT 300

Query: 326 VID 328
            +D
Sbjct: 301 QLD 303


>gi|311992719|ref|YP_004009587.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
           Ac42]
 gi|298684502|gb|ADI96463.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
           Ac42]
          Length = 372

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 113/324 (34%), Gaps = 21/324 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++   W+ Y       W   +      L  +K       D    +  N+ +   ++S+ +
Sbjct: 36  RFDKIWDLYKEMKALDWDEQDFDFAQCLTDFKRVPKKVAD---TMIYNIMWQWETDSVAS 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
               + I  +    E     LR    E VH  T+  I+        E+            
Sbjct: 93  QVPFVLIAPYDPCSEIVAAELRINDNETVHGATYSEIVKLSFDMPKEVLKELLAKTEAHR 152

Query: 158 KANWALQYTQTLS----SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILS 210
           + +        L       ++   T  +++E   D+ +FY    V E + F   F    +
Sbjct: 153 RLHVVGTELAALKRRSVELAYHGSTHFSEEEKTIDMMLFYYLMYVLERVQFMISFGVTFT 212

Query: 211 LGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268
           +  +     I    + I +DE  +H  + ++V+ ++   E+      + + K   +L E 
Sbjct: 213 ICESGVFQAIGSAVKKICQDEFEIHCEYRLEVLKELLASEHGQAAFAKLRPKMIKILKEV 272

Query: 269 TLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEP-----LFKYTENPFP 321
              EI +A      G   VG+NA    Q+  F A       G        +F   ENP P
Sbjct: 273 IESEITWAKFLFEDGQAIVGMNADVLIQWALFNAKAVAQNFGFTEEELGFVFPE-ENPMP 331

Query: 322 WMSEVIDLKKEKNF-FETRVTEYQ 344
            +   I++ K +N   ET    Y+
Sbjct: 332 HLESWININKTQNANQETVNGAYK 355


>gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii]
          Length = 111

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPS 154
            N+     R +   E +++   Q   E +HS T+  +I +   DE E    F+    +P+
Sbjct: 1   ENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPA 60

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           I  KA WA ++                D     +  V     EG+ +   F Q     + 
Sbjct: 61  IKNKALWAAKWIN--------------DTNSFAERIVANACVEGILYSGSFLQFFGFKKQ 106

Query: 215 NKMVG 219
           NK+ G
Sbjct: 107 NKLHG 111


>gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599]
 gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111
           W P ++    D   + + N    +E L   R  GF    E  V  +++  I         
Sbjct: 34  WNPQDIDFTQDREDYANMNPEQKEETL--GRIAGFL-GGEEAVTLDLLPLIMVIAEEGRL 90

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    FEEA H+  F+ ++ ++G    E  +++     +  +      + + L +
Sbjct: 91  EEEMFLTTFLFEEAKHTEFFRLVLDNIG----ESGDLHHFHDDVYKRI-----FHEILPN 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230
                 T  + +   +   V+ +  EG+   TG+     +L +   M G+ +   Y+  D
Sbjct: 142 ALHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPGLMQGIGYLKTD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWT 254
           ES H+++G  ++ ++  E+ H++ 
Sbjct: 202 ESRHISYGTFLLQRLICEHRHIYD 225


>gi|291570483|dbj|BAI92755.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
           platensis NIES-39]
          Length = 131

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF--NMY 149
            +S+   NI   I   ++ PE    +  Q  +E +H+ ++QY+I ++   E   +  + +
Sbjct: 1   MDSIQTCNIPY-IKNSVTAPEVSLCMAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFW 59

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
           R    +  +  +     Q            D   E      +   + EGM+FY GF    
Sbjct: 60  RTDKVLRDRCEFIAGLYQQYVD--------DPTPENYFVSLMADYLLEGMYFYNGFIFFY 111

Query: 210 SLGRANKMVGIAEQYQYIMR 229
           +L     M G A+ ++ I R
Sbjct: 112 NLASRMLMPGSADIFKMINR 131


>gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 441

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157
           V    + +   E R +   Q   E +HS  +  +I +   +  E    FN    +P +  
Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKK 293

Query: 158 KANWALQYTQTLSSPS 173
           KA+WAL +     + +
Sbjct: 294 KADWALNWIGNQKAST 309


>gi|171779596|ref|ZP_02920552.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281698|gb|EDT47132.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 144

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 9/141 (6%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M  IAE  + I+RDES+H  +          E       + +     +L++    E  Y 
Sbjct: 1   MANIAEIIKLIIRDESVHGTYIGYKFQLGFNELSEKEQDDLRDWMYDLLYQLYENEENYT 60

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333
                +  VG        ++++ AN+    +G +PLF  T    NP   M+ +       
Sbjct: 61  KTLYDQ--VGWT-EEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGISTGTSNH 116

Query: 334 NFFETRVTEYQQGA--ELKWD 352
           +FF      Y  G+   ++ D
Sbjct: 117 DFFSQVGNGYLLGSVEAMQDD 137


>gi|213159370|ref|YP_002321413.1| rr2 [Oryctes rhinoceros virus]
 gi|202073556|gb|ACH96232.1| rr2 [Oryctes rhinoceros virus]
          Length = 400

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 114/323 (35%), Gaps = 41/323 (12%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE-RLMIKRNLGFFASSESLV 96
           K+   ++ +L   +  W   E     D   +++   +T  E + ++   +G  A  +S+V
Sbjct: 55  KFKDTYDLWLKHQSCFWSVHENDPSVDRDRFET---MTPKEFQEILLCTVGCIAIGDSIV 111

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
            + I   +   +++ E +     Q   E +H   +  ++     D     N YR      
Sbjct: 112 LDRIANGLKERVTSIELKAMFSDQEAREFIHKKMYSNML-----DVSHRANYYRSEEFK- 165

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
              N  +   +TL+           D  ++Q    F ++ E + F   F  I        
Sbjct: 166 ---NEYMSVLETLADKY--------DIGYVQVQMFFIMMCEIILFTPMFQTICYAACKGY 214

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAY 275
              + +    +MRDE +H           ++++    TK  ++ +RT+L E + L    +
Sbjct: 215 CPKLCDLNLLVMRDEYIH-------YENARLQSFKFKTKLDRKFARTVLAEFSELTLQLF 267

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL----------EPLFKYTENPFPWMSE 325
           A           N    E++ + + +    + GL          + L+  T  P  +   
Sbjct: 268 AKIIGDYDDGVYNFKHVERHFKHVVHGFMSENGLYSSSDEFNESDALYGTT--PAQFYMS 325

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
           +   + + N  E   T Y    +
Sbjct: 326 LPKCESKINRMEANSTIYSVPGD 348


>gi|308183792|ref|YP_003927924.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047718|gb|ADO00261.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 308

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 28/284 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               +K  +    +     N W+   +P+ +D   W+    L+D ++  I R L   +  
Sbjct: 10  NWDDIKDNFDKYMWERLTTNFWLDIRIPITNDQTAWQQ---LSDTQQQAITRMLAGTSML 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFNMYRE 151
               +     AI       +    L    F ++VH+ +   I  +L   + GE F    +
Sbjct: 67  AVYQSEVGAPAIRHDRRTQQEESVLNTITFMKSVHAKSCTTIFRALIPGNGGESFTWADD 126

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             ++ A+ +   Q                     LQ   +F +   G+     F +  ++
Sbjct: 127 NANLQAEIDQLAQM--------------STSDMALQKKALFILTETGL----SFGKYWTI 168

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   +V   +    I+R  +L   +          E       E Q    T   +    
Sbjct: 169 LQTQALVNTYQMLANILRGSALFSAYIGYKFRLRFEELTVSDQTELQYWINTQFDQLMQT 228

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E  +    +      +N  S      + AN     +G   +++ 
Sbjct: 229 EKDFLEANLDDATEAINLAS------YGANHALMSLGFNAVYEV 266


>gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 111

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSN 110
           IK  L FFA+S+ +V  N+V      +  
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQI 111


>gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
 gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
          Length = 133

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  Q+ +E      +E Q++++ +L E   +E+AY  E      +  
Sbjct: 3   VKDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                 +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y + 
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118

Query: 347 AELK 350
             ++
Sbjct: 119 TNVE 122


>gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 133

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +  
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                 +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y + 
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118

Query: 347 AELK 350
             ++
Sbjct: 119 TNVE 122


>gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
 gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
          Length = 133

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +  
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                 +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y + 
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118

Query: 347 AELK 350
             ++
Sbjct: 119 TNVE 122


>gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 133

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           ++DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +  
Sbjct: 3   VKDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                 +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y + 
Sbjct: 61  -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118

Query: 347 AELK 350
             ++
Sbjct: 119 TNVE 122


>gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharomonospora viridis DSM 43017]
 gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 328

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 98/258 (37%), Gaps = 19/258 (7%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W P ++    D   W+    LTD +RL        FA+ E  V  +I   +    +   
Sbjct: 39  FWDPADIDFSVDARDWE---KLTDRQRLSATYLCAQFAAGEEAVTEDIQPFLRAMAAEGR 95

Query: 113 C--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
                YL +  FEEA H+  F+  + ++GL +          P +    ++   + + L 
Sbjct: 96  LGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDDL-------HPFVAENPHYRKLFYEELP 148

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMR 229
                     + +  ++    +  V EG    TG+     L      + G+ E  + +  
Sbjct: 149 ESLGVLAEDPSPRNQVRASVTYNHVIEGSLALTGYYAWQKLCVSRGILPGMRELVRRVSD 208

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE  H+ +G     +    +  LW +  QQ+   +L  A  + I + +    +   G NA
Sbjct: 209 DERRHMAWGTFTCRRHVAADDSLW-EVVQQRMDELLPHALGM-IEWVNRQFDESSDGDNA 266

Query: 290 PSCEQYMQFIANRRCHQI 307
                ++++ A+R   ++
Sbjct: 267 E----FVRYAADRAQRRL 280


>gi|282852893|ref|ZP_06262234.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
 gi|282556001|gb|EFB61622.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
          Length = 277

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 83/261 (31%), Gaps = 23/261 (8%)

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           M+  + G  A S +L     +  I +   N E         + E++++  + + +T    
Sbjct: 1   MLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAAVYNALQYLESINNKAYGHALTEFST 60

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
                 E FN   + P +  K        Q+ ++                     +V   
Sbjct: 61  SNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAIQKK---------------AAHVFIS 105

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              +++ F   L L   +K+   AE  +Y +R  +L+  +      +          K  
Sbjct: 106 TGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFNLSKEEQKNI 165

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    +       E+ + H       +       E Y+ +  N+    +G EP +    
Sbjct: 166 HKWVYDLCDRLYANELNHIHLLYEDTGLE---DKVEHYIHYTLNKALMNLGQEPKYPENV 222

Query: 318 NPFP--WMSEVIDLKKEKNFF 336
                   + +++    ++FF
Sbjct: 223 ETLDPTLTTGLMESAMIEDFF 243


>gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
           platensis NIES-39]
          Length = 123

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +  +I  E   ++    Q +   M   A   E  + +  +    +G+   S EQY +++A
Sbjct: 3   LFQKIIPEAMAIFPH-SQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLA 61

Query: 301 NRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           N R   IGLE L+   KY ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 62  NIRLRSIGLESLYSDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121


>gi|213855387|ref|ZP_03383627.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 160

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             Y E+  +T+  +   + T T++  +     ++  ++    L       E + FY  FA
Sbjct: 20  AYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFA 78

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSR 262
              +      M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+  
Sbjct: 79  CSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECY 138

Query: 263 TMLHEATLLEI 273
            +  +A   E 
Sbjct: 139 DLFVQAAQQEK 149


>gi|312865062|ref|ZP_07725290.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099173|gb|EFQ57389.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 318

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W+   GL+  E+  + R+L   A   +  +      I 
Sbjct: 25  WERATSLFWLDTRIPIEEDKPKWE---GLSKKEQDQLNRSLLLLAQEATYQSIEAGQIIR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWAL 163
               + +    L    F E V +  +  I+     +       +       +  +     
Sbjct: 82  NSQRSQQEIAILNNLQFTEMVATKAYNRILRVFNDERDLQVWLDWVDGQEFLQKRLKTID 141

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
               +              ++ L   F   +  EG+  Y+  A  L L ++     +   
Sbjct: 142 AIYNS--------------KDPLAKRF-AAICLEGLMNYSLLAYPLYLWQSKGFTSLGLM 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++R+ESLH  +    +  +  E      K+F+  +R  + +    E     +     
Sbjct: 187 LEMVIRNESLHCYYLGHKVKLLLTEVDQDEAKDFENWARDFVDKLVQQEEDLIEDYF--- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGL 309
            +       +  +   AN      GL
Sbjct: 244 LLDDAKSLAKDLLHQEANHILENFGL 269


>gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4]
 gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 326

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 95/269 (35%), Gaps = 15/269 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A + +       W P  +    D   +    GL+D+E+ +       F + E  VA ++ 
Sbjct: 29  AMKLFRKGNKKFWDPEAIDFSQDAQDFA---GLSDEEKRLTCILAAHFIAGEESVAQDLQ 85

Query: 102 LAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             +    +        YL +  FEEA H   F+    ++GL      + Y +      + 
Sbjct: 86  PFMSAMAAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSD--LHEYVDYSEPYQRI 143

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMV 218
                +T+ L    +   T  +    ++    +  V EG    TG+     +    N + 
Sbjct: 144 -----FTEELPKSLYALTTDPSPAAQIRASVTYNHVVEGCLALTGYYAWAKVCKSRNILP 198

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+ E  ++I  DE  H+ +G     +    +   W     ++ + +L  A  L +    +
Sbjct: 199 GMQEVIKHIGDDERRHMAWGTFTCRRHVAADDRNWD-VVDERMQELLEPALQLIVR-IFD 256

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           T  +   G+       Y     NRR   I
Sbjct: 257 TFDEIPFGITIDEMTDYGMDKLNRRLESI 285


>gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
 gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
          Length = 112

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314
           Q +   M   A   E  + +  +    +G+   S EQY +++AN R   IGLE L+   K
Sbjct: 8   QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 67

Query: 315 YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 68  YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110


>gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 314

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 19/262 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHL 108
              W P ++    +   W   + LTD ER    R    F + E  V  +I   +A  R  
Sbjct: 29  AKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEEAVTEDIQPFMAAMRAE 85

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
                  YL + AFEEA H+  F+  + S+G+  G+L     ++PS          +   
Sbjct: 86  GRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDLPSYR------QMFYDE 138

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYI 227
           L        T  +    ++    +  + EGM   TG+     +      + G+    ++I
Sbjct: 139 LPECLSALTTDPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERGILPGMQRLVRHI 198

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGFVG 286
             DE  H+ +G     +    N   WT  F+++   ++  A  L +  +A    P  F  
Sbjct: 199 SDDERRHMAWGTFTCRRHVAANDANWT-VFEERMNELIPLALQLTQDGFALYGDPMPFDL 257

Query: 287 LNAPSCEQYMQFIANRRCHQIG 308
               S E++M + +++   + G
Sbjct: 258 ----SVEEFMTYSSDKGMRRFG 275


>gi|60416874|emb|CAD71197.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
           subtilis]
          Length = 123

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFN 147
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFE 123


>gi|293556438|ref|ZP_06675016.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291601402|gb|EFF31676.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
          Length = 317

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 106/307 (34%), Gaps = 26/307 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +        WE    A +  W+ T +P+++D   W+    L+  ER  + R L F 
Sbjct: 12  NWNVIEDELDNVVWE---RATSLFWLDTRIPIEEDREKWE---KLSLQERKQLNRLLLFL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
           A+  +  +   V  I     + +    L    F E V++  +  I+       D  E F+
Sbjct: 66  ANLSTYQSIESVEVIRNSERSQQEIAILNNLQFTEMVNTKAYNRILRVFNKEIDLQEEFD 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +           Q         GT    + F+       V  EG+  Y   + 
Sbjct: 126 WIDTEPLVREYLEKIDTIYQ---------GTNPMKKRFMV------VCVEGLLNYAYLSY 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +  L      V +      I+R+ESLH  +    I  +  E      KEF+     ++  
Sbjct: 171 LFELWIEKGFVNLGSMLGMIVRNESLHCYYLNHKIRLLLRETKLEQVKEFKNWGVYIVDY 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              L I   ++      +  +       ++  AN     IGL   ++  E     ++  +
Sbjct: 231 FVELAIRLINDFYN---LENSKTVAINLVKQEANHILTGIGLNKAYQIDEKKLVTINRYL 287

Query: 328 DLKKEKN 334
           +  ++ +
Sbjct: 288 NELRKHD 294


>gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S]
 gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S]
 gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 323

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 22/269 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            ++      W P ++    D   W S   LT +E+         F + E  V  +I    
Sbjct: 28  LFVKGNAKFWNPADIDFTQDAEDWAS---LTSEEKRSSTYLCTQFIAGEEAVTEDIQP-F 83

Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
            + +   E R     YL +  FEEA H   F+  + ++GLD           P +    +
Sbjct: 84  MKAM-AAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLDGDL-------HPFVAENPH 135

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219
           +   + + L        T  +    ++    +  V EG    TG+     +        G
Sbjct: 136 YRTLFYEELPRSLRILETDPSPANQIRASVTYNHVIEGSLALTGYYAWQRVCTERGIFPG 195

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + E  + I  DE  H+ +G     +    +   W    QQ+   +L  A  + I + ++ 
Sbjct: 196 MQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWD-LVQQRMGELLPHALDM-IQWVNDQ 253

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             +   G++      Y+++ A+R   ++G
Sbjct: 254 FEEPPFGIDPA---VYLEYAADRAQRRLG 279


>gi|289804144|ref|ZP_06534773.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 130

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T+  +   + T T++  +     ++  ++    L       E + FY  FA   +  
Sbjct: 2   IEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFA 60

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEA 268
               M G A+  + I RDE+LHL     ++N ++   ++P +    +E +Q+   +  +A
Sbjct: 61  ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 120

Query: 269 TLLEI 273
              E 
Sbjct: 121 AQQEK 125


>gi|320450740|ref|YP_004202836.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
           scotoductus SA-01]
 gi|320150909|gb|ADW22287.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
           scotoductus SA-01]
          Length = 299

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 102/275 (37%), Gaps = 22/275 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           + Y  A    W P  + +++D    K+   L+ +++         F + E  V  +++  
Sbjct: 20  KLYHKAKRYFWDPQTIDLEEDQ---KTFQKLSPEQKEASLHLASLFVAGEEAVTLDLLPL 76

Query: 104 IYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           +         E   +L     +EA H   F  ++ +                     +N+
Sbjct: 77  VQVIAREGRLEEEMFLTTFLVDEAKHVEFFSLLLQA---------TAGEANLERFHGSNY 127

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS----LGRANK- 216
              + + L           + +  ++    + ++ EG+   TG+         L      
Sbjct: 128 RKIFYEELPQAMGRLLNDPSPEAQVEAAVTYNMIVEGVLAETGYYAYYRSAELLNAQGFA 187

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           + G  E  ++I RDES H+ +GI +I +    NP L+    +++  T+L  A  + +   
Sbjct: 188 LPGTLEGIRHIQRDESRHIAYGIYLIARHVAANPELF-PVVERRMSTLLPYALGV-VQDI 245

Query: 277 HETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE 310
            +  P+GF + L+     QY      +R  ++ L 
Sbjct: 246 FQAYPEGFPLKLDMNEFIQYAMGQFQKRYRRLELA 280


>gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi]
          Length = 72

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              QY++F+A+R    +G   +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 2   LMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 58


>gi|289824705|ref|ZP_06544204.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 141

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF 
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFS 115


>gi|56410463|ref|YP_145837.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|56378360|dbj|BAD74269.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
           HTA426]
          Length = 292

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 24/276 (8%)

Query: 42  AWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           AW+ Y  A     W P E+ + +D   +K    L +  R  +      F ++E  VA   
Sbjct: 32  AWKLYQMAIRFGTWNPQEIDLSEDKKHFKQ---LDEQRRAYLIHFCTGFWNAEENVALKF 88

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
              I     + E + +L  Q  +E  H+  F      +   + E+  +     ++  +A 
Sbjct: 89  CPWIM-IAPSIEQQAFLSTQLVDEFKHTEFFIRYFAEVLQTDREVKVLNLVHDTLDERAR 147

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVG 219
             L             G ++ +   L+ L  +  V EG+    G+       G+     G
Sbjct: 148 QLLS--------VLDKGPEEREIAMLEGLVHYQGVIEGIQAMVGYEVFEAVYGQYGLFPG 199

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHE 278
           + E ++ I RDE  H+ +G+ ++  +           + ++ + +  E    + + Y  E
Sbjct: 200 LKEGFKQIKRDEGRHVGYGLRMMKYLSK------NPSYAKRIKELFEEFLPKILVRYDQE 253

Query: 279 TMPKGFVGLNAPSC--EQYMQFIANRRCHQI-GLEP 311
            +  G           ++ +  +  RR   I GLE 
Sbjct: 254 IVVNGKRYDIPAEVNGKERLTRMYQRRLKDIFGLEA 289


>gi|229544146|ref|ZP_04433205.1| ribonucleotide reductase [Bacillus coagulans 36D1]
 gi|229325285|gb|EEN90961.1| ribonucleotide reductase [Bacillus coagulans 36D1]
          Length = 301

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 16/231 (6%)

Query: 43  WEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           ++ Y  A  N  W P ++    D   +     L ++ER+     +  F++ E  V  +I+
Sbjct: 20  YKLYEKAKRNGGWNPADIDFSQDREDF---LQLREEERIASLPLISSFSAGEEAVTLDIL 76

Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             ++            +L     +EA H+  F     ++G+ + +L   + +        
Sbjct: 77  PMLHAMARQGRLEDTMFLTTFLHDEAKHTEMFSRWQQAVGVGDLDLSAYHNDS------- 129

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218
            +   + + L        T D+ +  ++   V+ ++ EG+   +G+        +A    
Sbjct: 130 -YKRIFYEALPEAMERLYTDDSPEAVIRAATVYNMIVEGVLAESGYYSFRQIYKKAGLFP 188

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           GI +   Y+  DE  H+ FGI  I ++ + N   + K F      +   A 
Sbjct: 189 GILQGIDYLNMDEGRHIQFGIYTIQRLVVGNEERF-KLFHDYMDELWMHAY 238


>gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
 gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
          Length = 319

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P ++    D   W+    LT +E+         F + E  V  ++   +
Sbjct: 30  LFDKGNRKFWNPRDLDFSQDAEDWQ---RLTPNEKDNAMMLCAQFIAGEEAVTEDLQPFL 86

Query: 105 YRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
               +        YL +  FEEA H+  F+  + ++G+ E  L       P   A     
Sbjct: 87  QAMAAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED-LHRYVENNPGYRA----- 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIA 221
             + + L     +     +    ++    +  V EG    TG+ A  L       + G+ 
Sbjct: 141 -IFYEALPVALKSLADDPSPANQVRASVTYNHVVEGTLALTGYHAWNLLCTGRRILPGMQ 199

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  ++I  DE  H+ +G     +    +   W K        +L  A L++I +A E  P
Sbjct: 200 ELIRHIGDDERRHMAWGTFTCRRHVAADAANW-KVVTDTMEDLLPHA-LVQIQWAMENSP 257

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
           +    ++  +   Y    A RR   I
Sbjct: 258 ELPPEIDPTALMTYAGDRATRRLGAI 283


>gi|297529069|ref|YP_003670344.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
 gi|297252321|gb|ADI25767.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
          Length = 315

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%)

Query: 43  WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           ++ Y  A  N  W P ++    D   +     LT +E++     +  F++ E  V  +I+
Sbjct: 34  YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 90

Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
                           +L     +EA H   F      +G+   +L        S+    
Sbjct: 91  PMTNALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------SVFHND 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218
           ++   + + L        T D+ +  ++   V+ ++ EG    +G+        +A    
Sbjct: 143 HYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFP 202

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+ +   Y+  DE  H+ FG+  I ++  EN   +   F Q    +        +AY  E
Sbjct: 203 GLLQGIDYLNMDEGRHIQFGLYTIQRLVNEN-ERYYDLFIQYMDELWPHVVGY-VAYLTE 260

Query: 279 TMPKGF-------VGLNAPSCEQYMQFIANRRCHQI 307
              +         + ++      Y+    N R  QI
Sbjct: 261 LGKRQQQLARTYALEIDYDMLNNYVVKQFNIRKKQI 296


>gi|309805905|ref|ZP_07699937.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167681|gb|EFO69828.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 03V1-b]
          Length = 145

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
             +      AF  AVH+ ++  I ++L   +   E  N      ++ A+A   + Y    
Sbjct: 1   HEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYY--- 57

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                 TG      +    +        G   Y GF     L   NK+   A+  + I+R
Sbjct: 58  ------TGNDPLKSKVAAAMMP------GFLLYGGFYLPFYLSSRNKLPNTADIIRLILR 105

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           D+ +H  +      Q   +       E +    
Sbjct: 106 DKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVF 138


>gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
 gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
          Length = 318

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 17/267 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W PT++    D   W+    LT +++         F + E  V  +I    
Sbjct: 28  LFTKGNAKFWNPTDLDFSQDARDWQ---ELTSEQQRSATFLCAQFIAGEEAVTEDIQP-F 83

Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            + +S         YL +  FEEA H+  F+  +  +GL   +L +   + P        
Sbjct: 84  MKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGL-TSDLHSYVADNPYYR----- 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGI 220
              + + L S      T  +    ++    +  V EG    TG+     +      + G+
Sbjct: 138 -QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGM 196

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            +  + I  DE  H+ +G     +    + H W    QQ+   ++  A  + I + ++  
Sbjct: 197 QQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWD-VVQQRMGELMPMALGM-INWVNDQF 254

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307
                GL+     +Y    A RR   I
Sbjct: 255 EVQPFGLDNQEFLEYAADRAQRRLSAI 281


>gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
          Length = 317

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 40  GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
            WA    + +       W P ++    D A W+    L+DDER    R    F + E  V
Sbjct: 15  NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71

Query: 97  ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             +I       +          YL + AFEEA H+  F+  + ++G+ E    +++R + 
Sbjct: 72  TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212
            + A       +   L           +    ++    +  + EGM   TG+     +  
Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271
               + G+ E  + I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+
Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           E  +A       F          ++Q+  ++   + G
Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275


>gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
 gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
          Length = 323

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 40  GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
            WA    + +       W P ++    D A W+    L+DDER    R    F + E  V
Sbjct: 15  NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71

Query: 97  ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             +I       +          YL + AFEEA H+  F+  + ++G+ E    +++R + 
Sbjct: 72  TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212
            + A       +   L           +    ++    +  + EGM   TG+     +  
Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271
               + G+ E  + I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+
Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           E  +A       F          ++Q+  ++   + G
Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275


>gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4]
 gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 318

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 17/267 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W PT++    D   W+    LT +++         F + E  V  +I    
Sbjct: 28  LFTKGNAKFWNPTDLDFSQDARDWQ---ELTSEQQRSATFLCAQFIAGEEAVTEDIQP-F 83

Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            + +S         YL +  FEEA H+  F+  +  +GL   +L +   + P        
Sbjct: 84  MKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGL-TSDLHSYVADNPYYR----- 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGI 220
              + + L S      T  +    ++    +  V EG    TG+     +      + G+
Sbjct: 138 -QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGM 196

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            +  + I  DE  H+ +G     +    + H W    QQ+   ++  A  + I + ++  
Sbjct: 197 QQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWD-VVQQRMGELMPMALGM-INWVNDQF 254

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307
                GL+     +Y    A RR   I
Sbjct: 255 EVQPFGLDNQEFLEYAADRAQRRLSAI 281


>gi|261418216|ref|YP_003251898.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus sp.
           Y412MC61]
 gi|319767824|ref|YP_004133325.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
 gi|261374673|gb|ACX77416.1| ribonucleotide reductase [Geobacillus sp. Y412MC61]
 gi|317112690|gb|ADU95182.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
          Length = 302

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 98/276 (35%), Gaps = 24/276 (8%)

Query: 43  WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           ++ Y  A  N  W P ++    D   +     LT +E++     +  F++ E  V  +I+
Sbjct: 21  YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 77

Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
              +            +L     +EA H   F      +G+   +L        S+    
Sbjct: 78  PMAHALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------SVFHND 129

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218
           ++   + + L        T D+ +  ++   V+ ++ EG    +G+        +A    
Sbjct: 130 HYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFP 189

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+ +   Y+  DE  H+ FG+  I ++  EN   +   F Q    +        +AY  E
Sbjct: 190 GLLQGIDYLNMDEGRHIQFGLYTIQRLVNEN-ERYYDLFIQYMDELWPHVVGY-VAYLTE 247

Query: 279 TMPKGF-------VGLNAPSCEQYMQFIANRRCHQI 307
              +         + ++      Y+    N R  QI
Sbjct: 248 LGKRQQQLARTYALEIDYDMLNNYVVKQFNIRKKQI 283


>gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
 gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
          Length = 321

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 40  GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
            WA    + +       W P ++    D A W+    L+DDER    R    F + E  V
Sbjct: 15  NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71

Query: 97  ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             +I       +          YL + AFEEA H+  F+  + ++G+ E    +++R + 
Sbjct: 72  TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212
            + A       +   L           +    ++    +  + EGM   TG+     +  
Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271
               + G+ E  + I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+
Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           E  +A       F          ++Q+  ++   + G
Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275


>gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 305

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    LT+DER    R    F + E  V  +I       +  
Sbjct: 21  AKFWNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQP-FMSAMRV 76

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H   F+  + ++G+ E  L     ++P+          + +
Sbjct: 77  EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTED-LHQYLDDIPTYRT------IFYE 129

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 130 ELPDCLNALSVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 189

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGFV 285
           I  DE  H+ +G     +    +   W     + +  M     L+E  +  ++ MP G  
Sbjct: 190 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL- 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                S +++MQ+ A++   + G
Sbjct: 249 -----SVDEFMQYAADKGMRRFG 266


>gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           bovis AF2122/97]
 gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB
           [Mycobacterium tuberculosis F11]
 gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CDC1551A]
 gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis W-148]
 gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 4207]
          Length = 314

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285
           I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+E  +A       F 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                    ++Q+  ++   + G
Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275


>gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
 gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
          Length = 314

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285
           I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+E  +A       F 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                    ++Q+  ++   + G
Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275


>gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
 gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
          Length = 314

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285
           I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+E  +A       F 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                    ++Q+  ++   + G
Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275


>gi|284167352|ref|YP_003405630.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511]
 gi|284017007|gb|ADB62957.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511]
          Length = 296

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 118/317 (37%), Gaps = 39/317 (12%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M+  + +SP+++    +N   KR++ +         ++Y             HW P  + 
Sbjct: 9   MSEESPVSPLES--SGLNEHPKRLVRSA--------IEY-------------HWDPAAID 45

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +    A  ++ + L+  E   ++  L  F + E  V  ++   +   L   + ++Y+  Q
Sbjct: 46  V---RADQEAVSELSRVEFTRLRGLLAQFGAGERAVTTDLAP-LAVVLDGSDEQRYIATQ 101

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKANWALQYTQTLSSPSFTTGTK 179
            ++EA H+  F      +   E E   +    P +     +   +     S+       +
Sbjct: 102 LYDEARHTELFDRYWKRVIRPEEESRGLIPTEPMADRWSHDDYRELFDRTSNAMARLLER 161

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMVGIAEQYQYIMRDESLH 234
           D  +   +    +++  EG+   T +          L    ++ G+   ++Y+ RDE  H
Sbjct: 162 DTSETRARAFCHYHLTVEGILAQTAYRWVETRYSGELEAVPELPGLVNGFRYLRRDEGRH 221

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
           ++FG+  + ++  +     T          + E   L      + +  G +G +      
Sbjct: 222 VSFGVTKVRKLVDKGVDPET------IVETIDELVPLVETTIDQMVRDGSIGADRNGILN 275

Query: 295 YMQFIANRRCHQIGLEP 311
            +    +RR  Q+G+ P
Sbjct: 276 RIDTARDRRLEQVGVVP 292


>gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 331

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 95/275 (34%), Gaps = 29/275 (10%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           + +       W P ++ +  D   W+   GL +  R  I R   FF + E  V  +I   
Sbjct: 35  KLFAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEEAVTEDIQPF 91

Query: 104 IYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           +    +        YL + AFEEA H   F+  + +LG+ E            + A   +
Sbjct: 92  LRAMAAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHEDL-------HGYVDANPGY 144

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGI 220
              + + L S         + +  ++    +  V EG    TG+     L  A +   G+
Sbjct: 145 RTLFYEELPSSLEALLEDPSPRNQVRASVTYNHVIEGSLALTGYYAWNHLCTALDVFPGM 204

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I  DE  H+ +G     +    +   W        R  L E           T+
Sbjct: 205 RRIVRMIGDDERRHMAWGTFTCRRHVAADDANW-----DVVRDRLDELLPH----VTSTV 255

Query: 281 PKGFVGLNAPSCEQY-------MQFIANRRCHQIG 308
            +G      P+  +Y       +++  +R   ++G
Sbjct: 256 ERGEEPSGDPATRRYELPPGELVRYAGDRALRRLG 290


>gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 311

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285
           I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+E  +A       F 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                    ++Q+  ++   + G
Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275


>gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 317

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 16/264 (6%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
                 W P ++    D   W+   GLT++ER  +      F + E  V  ++   +   
Sbjct: 31  KGNAKFWDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAM 87

Query: 108 LSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
            +        YL +  FEEA H+  F+  + ++GL  G+L +   E P   A       +
Sbjct: 88  AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGL-TGDLHSHVAENPGYRA------IF 140

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQY 224
            + L           +    ++    +  V EG    TG+     + R    + G+ E  
Sbjct: 141 YEELPRSLNALHDDPSPANQVRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVV 200

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I  DE  H+ +G     +    +   W    Q++ + +L  A    I +  E  P+  
Sbjct: 201 RRIGDDERRHMAWGTFTCRRHVAADESNWD-VVQEQMQHLLPLAVTQ-IQWRPEDAPEET 258

Query: 285 V-GLNAPSCEQYMQFIANRRCHQI 307
              L+      Y    A RR   I
Sbjct: 259 PFRLDIDELAAYASDRAGRRLGAI 282


>gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
          Length = 323

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%)

Query: 40  GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
            WA    + +       W P ++    D A W+    L+DDER    R    F + E  V
Sbjct: 24  NWASLPLKLFAGGNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 80

Query: 97  ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             +I       +          YL + AFEEA H+  F+  + ++G+ E    +++R + 
Sbjct: 81  TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 135

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212
            + A       +   L           +    ++    +  + EGM   TG+     +  
Sbjct: 136 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 192

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271
               + G+ E  + I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+
Sbjct: 193 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 251

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           E  +A       F          ++Q+  ++   + G
Sbjct: 252 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 284


>gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
 gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB
           [Mycobacterium tuberculosis H37Ra]
 gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
          Length = 314

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285
           I  DE  H+ +G     +    +   WT  F+ +   ++  A  L+E  +A       F 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                    ++Q+  ++   + G
Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275


>gi|134303461|ref|YP_001111330.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
           nudivirus]
 gi|134022847|gb|ABO45396.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
           nudivirus]
          Length = 371

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 106/314 (33%), Gaps = 31/314 (9%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           +  +L      W P E+ +  D A +       +  + +    LG  A  +++V  N+  
Sbjct: 72  YNFWLKQVALAWSPEEISLSKDKATFH---RAPEQLKKISACMLGMLAIGDNIVLQNL-S 127

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
            +   ++N      + RQ   E  HS  +   +  L      ++       +        
Sbjct: 128 DVSEIITNNYVLNAISRQEDVEKTHSDFYSRSLDVLNDVGKSVYYKSEHFINNELY---- 183

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                          +K      L  +  F ++ E ++F   F  +  LG        A 
Sbjct: 184 ----------DIQQFSKKHSTNNLNKIAFFIMICERLYFLPAFVTVAYLGITGYAPHTAL 233

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI---AYAHET 279
             +Y+MRDE+LH        N  +  + +   K  +Q++  +L+E   +         + 
Sbjct: 234 GNRYVMRDENLH-------YNLWRNISANFEYKMNKQEALNILNEFEYILKCTIKNIFKN 286

Query: 280 MPKGFVGLNAPSCEQYMQFIA-NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
                   +       ++F   + R    GL P +K  + P   +   +  + + N  E+
Sbjct: 287 YSSKDSKFSLDIMLDILRFAFEDFRITN-GLIP-YKENKKPKTDLLNYLSYETDFNLMES 344

Query: 339 RVTEYQQGAELKWD 352
               Y+   E++ D
Sbjct: 345 TSVNYKTELEIEAD 358


>gi|213024643|ref|ZP_03339090.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 119

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114


>gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
 gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
          Length = 129

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             +E +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP
Sbjct: 17  VAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEP 76

Query: 312 LFK-YTENPFPWMSEVIDLK 330
            +   T NP PW++  +   
Sbjct: 77  AYPAATNNPIPWINAWLSSD 96


>gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1]
          Length = 312

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 24/264 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+S   LTD ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E        E+P+      +   + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITEDLQ-GYLDELPA------YCQMFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +      T  +    ++    +  V EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPASLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDRGILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284
           I  DE  H+ +G     +    +   W   F+ +   ++  A    E  +A ++ +P G 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-AVFETRMNELIPLALRNTEDGFALYDEVPFGL 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 T------MEEFQQYAADKGMRRFG 274


>gi|56421306|ref|YP_148624.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|10800082|dbj|BAB16601.1| unnamed protein product [Geobacillus thermoleovorans]
 gi|56381148|dbj|BAD77056.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
           HTA426]
          Length = 302

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 29/283 (10%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++        +  N  W P ++    D   + S   LT +E++     +  F++ E  V 
Sbjct: 17  EHPMFKLYEKAKRNGKWNPADIDFSQDQKDFAS---LTSEEKISALPLVAGFSAGEEAVT 73

Query: 98  NNIVLAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
            +I+   +            +L     +EA H   F     ++G+ + +L        S+
Sbjct: 74  LDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDL--------SV 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRA 214
               ++   + + L          D+ +  ++   V+ ++ EG    +G+        +A
Sbjct: 126 FHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKA 185

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
               G+ +   Y+  DE  H+ FGI  I +I  E      + + +     + E     I 
Sbjct: 186 GLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNE-----DERYYELFIRYMDELWPHVIG 240

Query: 275 YAHETMPKG----------FVGLNAPSCEQYMQFIANRRCHQI 307
           Y       G           + ++      Y+    N R  QI
Sbjct: 241 YVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQI 283


>gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           dioxanivorans CB1190]
          Length = 324

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 20/277 (7%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++       +      HW P ++    D         +TDDER         F + E 
Sbjct: 26  FPMR------LFAKGNARHWNPADIDFSQDARD---IAAMTDDERWWTFALAAQFMAGEE 76

Query: 95  LVANNIVLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  ++   +    +        YL +  FEEA H+  F+    ++G+ E          
Sbjct: 77  SVTQDLQPFVAAMAAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTEDL-------H 129

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL- 211
           P I    ++   +TQ L +  +      + +  ++    +  + EG    TG+     + 
Sbjct: 130 PFIEFNEHYMQIFTQELPASLYALAADPSPRNQVRASVTYNHIVEGTLALTGYFTWAKIC 189

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                + G+ +  ++I  DE  H+ +G     +    +  ++    ++    M+    ++
Sbjct: 190 TSRGILPGMQQVIKHIGDDERRHMAWGTFTCRRHVAADDAMFDVVDERMQELMVPSMGVV 249

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              +       G V  +     +  ++  ++   ++G
Sbjct: 250 TGTFEKVEADGGQVPFDV-DMNELAEYAMDKLGRRLG 285


>gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
 gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
          Length = 306

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 9/270 (3%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E Y      HW   ++    D   W  +    ++ER      L  F   E  VA  +   
Sbjct: 38  ELYSLWERQHWAVQDLDFTQDKLDWHERFD--EEERFARMYGLSAFFIGEQRVAAELGP- 94

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           + R     + R +L  Q  +EA H   F    + + +   E         S      + +
Sbjct: 95  LMRAAPQEDMRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLNPEFGV 154

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSLGRA-NKMVGIA 221
            + + L S      T+  D E L +    +++V EGM   TG   I+        + G  
Sbjct: 155 LFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGTLPGFV 214

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM--LHEATLLEIAYAHET 279
           E +  + RDE  H+ FG   +  +   +P       Q+    +  + E   L+  +A + 
Sbjct: 215 EGFINVARDEHRHVAFGARFLRDMARSDPRHV-AAIQRTLGEIAPVAEGV-LKPKWAPDD 272

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                 G++      +      RR   IGL
Sbjct: 273 DDFEIFGISVTETRAFAFRALERRMKVIGL 302


>gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina
           98AG31]
          Length = 130

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+    D+  W+  N L +DE+  IK  L F A+S+ +V  N++      +   E
Sbjct: 60  FWTAGEIDPSKDMHNWE--NRLKNDEKHFIKHILAFLATSDRIVNQNLIKRYSGEVQAAE 117

Query: 113 CRQYLLRQAFE 123
            + +   Q   
Sbjct: 118 AQCFYGFQIMI 128


>gi|213646444|ref|ZP_03376497.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 141

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
              L + E+ +   NL +    +S+   +  +A+   +S PE   ++  
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 111


>gi|330861132|emb|CBX71395.1| hypothetical protein YEW_EY21270 [Yersinia enterocolitica W22703]
          Length = 90

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNP 111
           +++       A+ +    P
Sbjct: 71  DTIQNTLGAPALIKDAITP 89


>gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
           AA4]
 gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
           AA4]
          Length = 323

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 96/267 (35%), Gaps = 17/267 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            ++      W P ++    +   W   + LT +++      +  F + E  V  +I    
Sbjct: 29  LFVKGNKKFWNPADLDFSKEREGW---DSLTPEQQRSTTYLVAQFIAGEEAVTEDIQP-F 84

Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            R +S         YL +  FEEA H   F+  + ++GLD  +L +   E P        
Sbjct: 85  MRAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLD-DDLHSYVAENPHYRK---- 139

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGI 220
              + + L           +    ++    +  V EG    TG+     +   N+ + G+
Sbjct: 140 --LFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQNQILPGM 197

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            E  ++I  DE  H+ +G     +    +  +W    Q++   +L  A  + I +  +  
Sbjct: 198 QELVRHIGDDERRHMAWGTFTCRRHVAADDAMWDA-VQERMGELLPHALGM-IQWVQDQF 255

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307
            +     +     QY    A RR   I
Sbjct: 256 EEVPFDNDPEELLQYAADRAQRRLGAI 282


>gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium
           avium 104]
          Length = 311

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    LTDDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H   F+  + ++G+   +L +   +VPS          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPSYRT------IFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285
           I  DE  H+ +G     +    +   W     + +  M     L+E  +A ++ MP    
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL- 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                S +++M + +++   + G
Sbjct: 257 -----SVDEFMAYASDKGMRRFG 274


>gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 311

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    LTDDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H   F+  + ++G+   +L +   +VPS          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPSYRT------IFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285
           I  DE  H+ +G     +    +   W     + +  M     L+E  +A ++ MP    
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL- 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                S +++M + +++   + G
Sbjct: 257 -----SVDEFMAYASDKGMRRFG 274


>gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1]
 gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain)
           [Mycobacterium gilvum PYR-GCK]
 gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1]
          Length = 312

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 103/264 (39%), Gaps = 24/264 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+S   L+  ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E        ++P+          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITEDLQ-GYLDDLPAYR------QMFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +      T  + Q  ++    +  V EGM   TG+     +    + + G+ E  + 
Sbjct: 138 ELPASLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDRHILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284
           I  DE  H+ +G     +    +   WT  F+ +   ++  A    + A+A ++ +P G 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFEDRMNELIPLALQNTDDAFALYDEIPFGL 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 T------IEEFQQYAADKGMRRFG 274


>gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 313

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 22/263 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D   W+    LT+DER    R    F + E  V  +I       +  
Sbjct: 29  AKFWNPADIDFSRDREDWE---RLTEDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H   F+  + ++G+ E   +    +VP+          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITEDLHY-FLDDVPTYRT------IFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +         +    ++    +  + EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPACLNALTLDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285
           I  DE  H+ +G     +    +   W     + +  M     L+E  +A ++ MP G  
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFGL- 256

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
                S +++MQ+ +++   + G
Sbjct: 257 -----SVDEFMQYASDKGMRRFG 274


>gi|284176152|ref|YP_003406429.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284017809|gb|ADB63756.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 302

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y +A   HW P E+ ++ D    +    L D     +K++L  F + E  V  ++   +
Sbjct: 22  YYRNAVEKHWDPHEIDLEADR---EGATDLPDPAFEGLKQSLALFGAGEESVTEDLAP-L 77

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-AL 163
              L + E + ++  Q +EE+ H+  F      +   E E        P+     N    
Sbjct: 78  AVVLEDIEDQLFITTQLYEESKHTDFFDRYWREVIHAEEERRGQELSSPADEKWFNEPYD 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGRAN----KMV 218
           +  +           +D  +   +    +++  EG+   TG+    L+ G        + 
Sbjct: 138 ELFERNERAMVQLLEEDTPKNRAKAHCHYHLTIEGILAQTGYYGLTLAYGEQEPDLPDLP 197

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           G+ E  + +  DE  H+ FG+  +  + I+   +     +     ++
Sbjct: 198 GLVEGLKLVRSDEGRHVGFGMAQLKSLVIDG-EVDPDVLRDTVDELV 243


>gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata
           obscuriglobus UQM 2246]
          Length = 70

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
             GL+      Y ++ A+RR   +G+ P+F  T+NPF +M  + D+++  NFFE RV+ Y
Sbjct: 1   MAGLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFMD-LQDVQELTNFFERRVSAY 58

Query: 344 QQG 346
           Q G
Sbjct: 59  QLG 61


>gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           abscessus]
          Length = 313

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 19/262 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P  +    D A W+S   LT+ ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQP-FMSAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E  L     ++P+          +  
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED-LHGYLDDLPAYRE------IFFD 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L           +    ++    +  V EGM   TG+     +      + G+ E    
Sbjct: 138 RLPDALGMLAADPSPAAQVRASVTYNHVVEGMLALTGYFAWHKICVDRGILPGMQELVHR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I  DE  H+ +G     +    +   W+  F+ +   ++  A  L      E        
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWS-VFEARMNELIPIALRL-TEEGFELYGDDTPF 255

Query: 287 LNAPSCEQYMQFIANRRCHQIG 308
               S +++MQ+ A++   + G
Sbjct: 256 --GLSLDEFMQYSADKGMRRFG 275


>gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 320

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    LT+ ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFSRDRADWE---ALTEREREYATRLCAEFIAGEEAVTKDIQP-FMSAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+   +L ++  EVP+      +   + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGV-TDDLHSLIEEVPA------YVQIFCE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +      +  +    ++   V+  V EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPAALEALTSDPSPAAQVRASVVYNHVVEGMLALTGYYAWHRICVDRGILPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I  DE  H+ +G     +    +   W   F+     ++  A  L        +    + 
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-AVFETHMNELIPVALRLTQE--GFALYGDDIP 254

Query: 287 LNAPSCEQYMQFIANRRCHQIG 308
                  +++Q+ ++R   + G
Sbjct: 255 FGLEE-GEFLQYSSDRGMRRFG 275


>gi|70607921|ref|YP_256791.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568569|gb|AAY81498.1| ribonucleotide reductase, small chain [Sulfolobus acidocaldarius
           DSM 639]
          Length = 330

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 21/260 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
             E ++  +  +      D N   P++     EK+       W   E+    D   WK  
Sbjct: 10  TKEGKILHNKFKSTVEGLDWNT-FPMRLFEIGEKF------RWTAYELDFSKDREDWK-- 60

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRHLSNPECRQYLLRQAFEEAVHSH 129
             L   +R   K    +F + E  VA +I+        L   E   YL + A +EA H+ 
Sbjct: 61  -KLKPSDRTQNKIISSYFLAGEECVARDILPLANAMEELGLIEEALYLTQFARDEANHTV 119

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            F+    S+G  EG     Y+  P           + + + +         + +  ++ +
Sbjct: 120 AFRKWFESVGETEGIYDFTYKNEPYRR-------LFYEIIPTDMRRLYNDPSPENIVRAV 172

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
             +  V EG+   TG+   +         + G+ +  + I RDE+ H++FG  V   +  
Sbjct: 173 VSYNFVAEGILAETGYYGYVKGYEKILPALPGLYKMVKLITRDEARHISFGAYVAALMIS 232

Query: 248 ENPHLWTKEFQQKSRTMLHE 267
            +      EF +    +  E
Sbjct: 233 MHGDSVLNEFNRYFGQLTQE 252


>gi|46309416|ref|YP_006306.1| ORF38 [Agrotis segetum granulovirus]
 gi|46200633|gb|AAS82700.1| ORF38 [Agrotis segetum granulovirus]
          Length = 369

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 16/258 (6%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            R+  D     N+ + V ++ P  Y  +W  Y     N+W  TE    + L        L
Sbjct: 19  PRLEEDLPEYNNSETLVLKIWPPTYAPSWHYYQLHQANYWSATE---HEPLEDVSGFIKL 75

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQY 133
               +  +  +    A  +  V   I           EC Q++ + Q   E +H   +  
Sbjct: 76  DSQWQKAVLHSFAILAIGDDAVMQFIDENDLEW---EECTQWMFKDQGARETIHKIVYNK 132

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++     D    F     + +     N+ L     L    +    +   +       +F 
Sbjct: 133 MLH--LADHSSEFTT--SMLTSKKYINYILHNNSDLKLQKYKLEDEVMKKAAFLIKMIFC 188

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              E   F T F  I  +G +  +         +M+DE +H    + +   +K ++  + 
Sbjct: 189 ---ERYLFATPFLVINLMGESGFLNNCVRINMQVMKDEHVHYLHAVQLFRDLKPKSDQI- 244

Query: 254 TKEFQQKSRTMLHEATLL 271
             E  +    M  E   +
Sbjct: 245 -DEINKLFFDMAQEFVEI 261


>gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 79

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KN 334
                    +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++  N
Sbjct: 2   GDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGV-QHPIKWVESFSSFNEQRSN 60

Query: 335 FFETRVTEYQQGAELKWD 352
           FFE RV+ Y +G+    D
Sbjct: 61  FFEARVSNYAKGSVSFDD 78


>gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
 gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
          Length = 322

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 93/267 (34%), Gaps = 17/267 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            ++      W P ++    +   W +   L  +++      +  F + E  V  +I    
Sbjct: 29  LFVKGNKKFWNPADIDFSREREGWDT---LNPEQQRSTTYLVAQFIAGEEAVTEDIQP-F 84

Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            R +S         YL +  FEEA H+  F+  + ++GL E          P +    ++
Sbjct: 85  MRAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTEDL-------HPFVAENPHY 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ-ILSLGRANKMVGI 220
              + + L           +    ++    +  V EG    TG+    L   + + + G+
Sbjct: 138 RKLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQHDILPGM 197

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            E  + I  DE  H+ +G     +    +  LW     Q+   +L  A  + I +  +  
Sbjct: 198 QELVRRIGDDERRHMAWGTFTCRRHVAADDSLWDAVL-QRMGELLPHALNM-IQWVQDQF 255

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307
            +     +     QY    A RR   I
Sbjct: 256 EELPFDNDPQEIVQYAADRAQRRLGAI 282


>gi|171779438|ref|ZP_02920402.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282055|gb|EDT47486.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 317

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 91/278 (32%), Gaps = 23/278 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W     L  +E+  +KR L    +  +  +  +   + 
Sbjct: 25  WERATSLFWLDTRIPIENDFTNW---VKLNLEEQEQLKRLLILLTNLSTNQSIEVGEIVR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
               + +    L    F E V++  +  I+ +   +    + F        +    N   
Sbjct: 82  NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKEINLKKSFEWVDNESRVLEYLNDIN 141

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +               +  L       +  EG+  Y   A +  L    +   +   
Sbjct: 142 TVYR---------------ESSLVKKRFIALCIEGLLNYAYLAYLFELWINKEFNNLGSM 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+R+ESLH  +    I  +  E+     + F+      ++    L I    +     
Sbjct: 187 LEMIIRNESLHCFYFSHKIKLLLKESDLQEVERFKAWGYETVNHFVKLGINLIGDFY--- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           ++  +    +  +   AN     IGL+  F +      
Sbjct: 244 YLKESKIIAKNLILQEANNILMGIGLKEQFNFNAEVLK 281


>gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 313

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 91/258 (35%), Gaps = 16/258 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W P  +    D A W+    L+D ER+ + R    F + E  V  +I       +     
Sbjct: 32  WDPANIDFSRDSADWE---ALSDRERVYVTRLCAGFIAGEEAVTQDIQP-FMAAMRAEGR 87

Query: 114 ---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
                YL + AFEEA H+  F+  + ++G+   +L +   + P+     +      + L 
Sbjct: 88  LGDEMYLTQFAFEEAKHTQAFRLWLDAVGV-RDDLHSFLDQTPAYRQLFD------EELH 140

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMR 229
               T     +    ++    +  + EGM   TG+     +      + G+ +  ++I  
Sbjct: 141 ESLNTLYVDPSPAAQVRASVTYNHIIEGMLALTGYYAWHKICVEHGILPGMQQLIRHIGD 200

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE  H+ +G     +    +   WT  F+ +   ++     L    +          L+ 
Sbjct: 201 DERRHMAWGTFTCRRHVAADDTNWT-VFETRMNELIPLGQRLIDEGSALYGDDIPFNLSI 259

Query: 290 PSCEQYMQFIANRRCHQI 307
                Y      RR   I
Sbjct: 260 DEMRTYATDKGMRRFSTI 277


>gi|323508655|dbj|BAJ77221.1| cgd6_700 [Cryptosporidium parvum]
          Length = 285

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-------------LF 146
           +   +   +  PE R Y       E ++   F   +  +  ++ +               
Sbjct: 38  LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEMIRKNKEKIERTDEVEKKDENNL 97

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N               L   +  +      G    +     +  ++YV+ + ++  +   
Sbjct: 98  NSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTLFSEKLIYYVIIKKIFSSSIHL 157

Query: 207 QILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             LS    N         + +    I RDE   + F + +   +K       TK    + 
Sbjct: 158 LRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLSIAKSMK-------TKPSNDQV 210

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +L +A +LE  +    +    + +       ++ F A+     +     F  + NPF
Sbjct: 211 VNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNADEILVDLKYPRQFNVS-NPF 268


>gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
           jeotgali B3]
 gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
           jeotgali B3]
          Length = 297

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 77/202 (38%), Gaps = 16/202 (7%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           HW P E+ +  D    +  + L       ++R L  F + E+ V  ++   +   L   E
Sbjct: 28  HWDPAEIDLSVDR---ERLSQLDGATFTDLRRTLALFGAGEAAVTEDLAP-LAVVLEGIE 83

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--- 169
            + ++  Q +EEA H+  F     ++     E   + R  P       W  +    L   
Sbjct: 84  DQMFVTTQLYEEAKHADFFDRYWRAVIHPAEEDRGLERTSPLDDR---WFFEAYHDLFER 140

Query: 170 -SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKMVGIAEQ 223
                     +D  +   + L  +++  EG+   TG+  + +     +     + G+ + 
Sbjct: 141 NERAMDRVLKEDTPENRARALCHYHLTIEGVIAQTGYYAVQTSYSGEIPELPLLPGLVDG 200

Query: 224 YQYIMRDESLHLNFGIDVINQI 245
           +  I  DE  H+ FG+  + ++
Sbjct: 201 FTEIRGDEGRHVGFGMAKLKEL 222


>gi|121729792|ref|ZP_01682228.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121628467|gb|EAX60957.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 107

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQ 115
            +  +A+   +S PE   
Sbjct: 90  RSPNVALLPLVSLPELET 107


>gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp.
           JLS]
          Length = 312

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+S + L   ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ +        ++PS          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDDLQ-CYLDDLPSYR------QMFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +      T  +    ++    +  V EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284
           I  DE  H+ +G     +    +   W + F+ +   ++  A    + ++A ++ +P GF
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGF 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274


>gi|70607929|ref|YP_256799.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568577|gb|AAY81506.1| hypothetical protein Saci_2220 [Sulfolobus acidocaldarius DSM 639]
          Length = 345

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 45  KYLSACNNHWMPTEVP--MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
            +  +    W P +    +Q D   W++   +++ ER + +     F++ E  V+  +  
Sbjct: 34  LWAKSNELFWSPLQFKELIQQDKQDWET---MSESEREISEYIATAFSAGEEAVSRYLAE 90

Query: 103 AI--YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
            +     L   E   +L +   EE  H+  F+  + S+G+D+          PS      
Sbjct: 91  LVIALDELGYTEEVLFLNQFQQEETRHTDAFRRWMDSIGMDKDTEKWTTEINPSYYE--- 147

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219
               +   L S ++      + +  L+    +    EG+   TGF    ++    + + G
Sbjct: 148 ---LFYVALPSAAYGVKANPSPESILRFTATYMFSIEGIAAETGFYFWRTMWERGRHLKG 204

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           I E  + +  DES HL FG  +   +  E+  L+ K  +
Sbjct: 205 IYEIVKRVAADESRHLAFGTYLTTMLIGEDQSLYDKFLE 243


>gi|209523560|ref|ZP_03272114.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
 gi|209495965|gb|EDZ96266.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
          Length = 107

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           +  Q  +E +H+ ++QY+I ++   E       R       + +  L+      +  +  
Sbjct: 1   MAEQISQEGMHNQSYQYMIETIIPSER------RNYVYDFWRTDKVLRDRCEFIAGLYQE 54

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
              D   E      +   + EGM+FY GF    +L     M G A+ ++ I R
Sbjct: 55  YVDDPTPENYFVSLMADYLLEGMYFYNGFIFFYNLASRMLMPGSADIFKMINR 107


>gi|146322251|ref|YP_001174720.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
 gi|145968742|gb|ABQ00020.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
          Length = 317

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 23/278 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W   N     +   +   L   ++++S+    IV    
Sbjct: 25  WERATSLFWLDTRIPIENDFTNWIKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVRN-- 82

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
              S  E    L    F E V++  +  I+ +   +    + F        +    N   
Sbjct: 83  GKCSQQEV-AILNNIQFIEMVNTKAYNRILLTFDKEINLEKSFEWVDNDSRVLEYLNDIN 141

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +               +  L       +  EG+  Y   + +  L    +   +   
Sbjct: 142 TVYR---------------ESSLIKKRFIALCVEGLLNYAYLSHLFELWINKEFNNLGTM 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+R+ESLH  +    +  +  E+     + F+  S   ++    L +    +     
Sbjct: 187 LEMIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIDDFY--- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           ++  +    +  +   AN     IGL+  F + +    
Sbjct: 244 YLKESKKIAKNLILQEANNILMGIGLKEQFGFNDEVLK 281


>gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB
           (ribonucleotide reductase small chain) [Mycobacterium
           sp. MCS]
 gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp.
           KMS]
          Length = 312

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 24/264 (9%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+S + L   ER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQP-FMAAMRA 84

Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ +        ++PS          + +
Sbjct: 85  EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDDLQ-CYLDDLPSYR------QMFYE 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226
            L +      T  +    ++    +  V EGM   TG+     +      + G+ E  + 
Sbjct: 138 ELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRR 197

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284
           I  DE  H+ +G     +    +   W + F+ +   ++  A    + ++A ++ +P GF
Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGF 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274


>gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           sp. P1]
          Length = 326

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 19/223 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++       +      HW P+ +    D   +     +TDDER         F + E 
Sbjct: 29  FPMR------LFSKGNGKHWDPSAIDFTQDAEDFA---AMTDDERWQTCALAAQFMAGEE 79

Query: 95  LVANNIVLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  ++   +    +        YL +  +EEA H+  F+    ++G+  G+L +     
Sbjct: 80  SVTQDLQPFVAAMAAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGM-TGDLHSYIEHN 138

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL- 211
                  ++   +T+ L    +      +    L+    +  V EG    TG+     + 
Sbjct: 139 E------HYLEIFTRALPESLYALADDPSPANQLRASVTYNHVVEGTLALTGYFTWHKIC 192

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
                + G+ +  ++I  DE  H+ +G     +    +  LW 
Sbjct: 193 AERGILPGMQKVIKHIGDDERRHMAWGTFTCRRHVAADDALWD 235


>gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           jostii RHA1]
 gi|123045538|sp|Q0S392|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii
           RHA1]
          Length = 324

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 19/268 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W PT++    D   W+   GL  +++      +  F + E  V  +I    
Sbjct: 34  LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQP-F 89

Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
            + +   E R     YL +  FEEA H+  F+  + ++GL            P +     
Sbjct: 90  MKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDL-------HPFVAENPY 141

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219
           +   + + L        T  +    ++    +  V EG    TG+     +      + G
Sbjct: 142 YRQLFYEELPGSLKVLETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPG 201

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + E  + I  DE  H+ +G     +    +   W    Q++   ++  A  + I + ++ 
Sbjct: 202 MQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWG-VVQERMAELMPLALGM-IDWVNKQ 259

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                 GL+      Y    A RR   I
Sbjct: 260 FEVQPYGLDDQEFIAYAADRAQRRLGAI 287


>gi|256378482|ref|YP_003102142.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
 gi|255922785|gb|ACU38296.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
          Length = 320

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 17/276 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K     + Y     + W   ++    D   W++   +TD ER         F  +E  V 
Sbjct: 38  KLPEYIDLYKRYFTHRWNAYDLDFSQDAVDWRT--KMTDVERKAFTEIAAAFHHAERQVE 95

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
             +   I+    + E + YL  Q  +EA H+  F      +    G+             
Sbjct: 96  VELP--IFMLTGSEEAKMYLCTQLEDEARHTLFFDRFYREVVGLPGDSVEELLASSFPHV 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216
              +   +              +   + ++    +++  EG+   T     L+  R    
Sbjct: 154 PETFVGAFGLLSYLADDLRVDPENPAKRVRYATAYFMWIEGVLALTIMKLTLTYCRTKGY 213

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY- 275
           + G    +    RDE+ H+ FG+  +     E+P L  +         +HE    E+A  
Sbjct: 214 LPGYYTGFIASCRDEARHVQFGMRFLRDSVQEDPRLLHE---------IHETLRTELAMN 264

Query: 276 --AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
             A    P   +G +      +M    N +   +G+
Sbjct: 265 GGASVPAPLEPLGFSEEEVVHFMIRQVNNKLSDVGI 300


>gi|221309908|ref|ZP_03591755.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314231|ref|ZP_03596036.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319154|ref|ZP_03600448.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323427|ref|ZP_03604721.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 123

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +  +I  +      KE    +  +L E    E+ Y  +   +  +   AP  ++++++ A
Sbjct: 2   LAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQVGL---APDVKKFIRYNA 58

Query: 301 NRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           N+  + +G +  F+  + NP   ++ +    K  +FF T+   Y++   
Sbjct: 59  NKALNNLGFDHWFEEEDVNPIV-INGLNTKTKSHDFFSTKGNGYKKATV 106


>gi|293570202|ref|ZP_06681272.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|291609715|gb|EFF38975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
          Length = 317

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 23/270 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W   N     +   +   L   ++++S+    IV    
Sbjct: 25  WERATSLFWLDTRIPIENDFTNWIKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVRN-- 82

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
              S  E    L    F E V++  +  I+ +   +    + F        +    N   
Sbjct: 83  GKCSQQEV-AILNNIQFIEMVNTKAYNRILLTFDKEINLEKSFEWVDNDSRVLEYLNDIN 141

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +               +  L       +  EG+  Y   + +  L    +   +   
Sbjct: 142 TVYR---------------ESSLIKKRFIALCVEGLLNYAYLSHLFELWINKEFNNLGTM 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+R+ESLH  +    +  +  E+     + F+  S   ++    L +    +     
Sbjct: 187 LEMIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIGDFY--- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           ++  +    +  +   AN     IGL+  F
Sbjct: 244 YLKESKKIAKNLILQEANNILMGIGLKEQF 273


>gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           opacus B4]
 gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 324

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 19/268 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W PT++    D   W+   GL  +++      +  F + E  V  +I    
Sbjct: 34  LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQP-F 89

Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
            + +   E R     YL +  FEEA H+  F+  + ++GL            P +     
Sbjct: 90  MKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDL-------HPFVADNPF 141

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219
           +   + + L        T  +    ++    +  V EG    TG+     +      + G
Sbjct: 142 YRQLFYEELPGSLKVLETDPSPANQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPG 201

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + E  + I  DE  H+ +G     +    +   W    Q++   ++  A  + I + ++ 
Sbjct: 202 MQELVRRIGDDERRHMAWGTFTCRRHVAADDGNWG-VVQERMAELMPLALGM-IDWVNKQ 259

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                 GL+      Y    A RR   I
Sbjct: 260 FEVQPYGLDDQEFIAYAADRAQRRLGAI 287


>gi|270614678|ref|ZP_06221723.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae HK1212]
 gi|270317993|gb|EFA29282.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae HK1212]
          Length = 103

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6   FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
              L + E+ +   NL +    +S+   +  +A+   +S P
Sbjct: 65  --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIP 103


>gi|284046710|ref|YP_003397050.1| sterol-binding domain protein [Conexibacter woesei DSM 14684]
 gi|283950931|gb|ADB53675.1| Sterol-binding domain protein [Conexibacter woesei DSM 14684]
          Length = 419

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 13/232 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   + ++       W  TE+    D   W+ +      ER     N   F   E  V
Sbjct: 10  ISYEDLYARWERGN---WRATEIDFTADSEQWQERFD--AFERRAALWNYSLFFHGEDAV 64

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
           A+N+   I       E + +L  Q  +EA H+  F+  +  +                  
Sbjct: 65  ADNLSPYI-DAAPLEEQKYFLTTQQVDEARHAVFFKRFMHEVCDVGDGTMAGGLAAIQPD 123

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRAN 215
               +   +   L + +       +  +    L +++++ E     +G       L + +
Sbjct: 124 LTWGFRRVF-DRLDTMADELRRDRSKPKLAAALALYHLIVEATLAQSGQHFITGYLEQRD 182

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + G     + +  DE  H+ FG+ ++  ++ E+P     E ++    +L E
Sbjct: 183 VLPGFYGGMRNVEFDEQRHIGFGVKLLYDLQREDP-----ECKEAVAELLRE 229


>gi|145637995|ref|ZP_01793631.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittHH]
 gi|145268805|gb|EDK08772.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittHH]
          Length = 115

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  ++I RDE+LHL     ++N +    ++P +    +E +Q++  +   A   E
Sbjct: 1   MEGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQE 60

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
            A+A      G  +GLN     QY+++I 
Sbjct: 61  KAWADYLFKDGSMIGLNRDILVQYVEYIT 89


>gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 297

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 89/270 (32%), Gaps = 23/270 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P  +    D   W    GLTDD+R      +  F + E  V  +I    
Sbjct: 10  LFTKGNAKTWDPASIDFSQDALDWA---GLTDDQRRSATYLVSQFVAGEEAVTEDIRP-F 65

Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
              +S  +      YL +   +EA H+  F+  + ++GL E  L     E P        
Sbjct: 66  MNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTED-LHPYVAENPFYRE---- 120

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGI 220
              + + L        T  +    ++    +  V EG    TG+     +   +  + G+
Sbjct: 121 --LFYEQLPQALRILNTDPSPVNQVRASVTYNHVIEGSLALTGYYAWRRICVESEILPGM 178

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE---IAYAH 277
            +    I  DE+ H+ +G     +    +  LW     Q       E   L    I +  
Sbjct: 179 QQLIGSIAEDETRHMAWGTFTCRRHVAADDSLW-----QVVTDRFGELVPLAMGMIKWVD 233

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               +   G++      Y    A RR H I
Sbjct: 234 GQFDEAPFGIDNDVFLTYAADRAQRRLHAI 263


>gi|289583058|ref|YP_003481524.1| ribonucleotide reductase subunit beta [Natrialba magadii ATCC
           43099]
 gi|289532611|gb|ADD06962.1| Ribonucleotide reductase beta subunit-like protein [Natrialba
           magadii ATCC 43099]
          Length = 309

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 28/298 (9%)

Query: 36  PLKY---GWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           P+ Y     ++E Y        W P +  +  D   W+     ++ E+         F  
Sbjct: 2   PIDYSNREKSYELYRKGKREGTWDPDDYDLTQDREDWEQF---SEAEQHRFLATCSGFYD 58

Query: 92  SESLVANNIVLAIYRHLSNP---------ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            E  V   +   +    + P         +   YL +Q +EEA H+  F      +   +
Sbjct: 59  GEEDVTRTLAPYMMALDALPNDELPFDTVQEEMYLAQQVYEEAKHTDLFSRYFEEVFGTQ 118

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                            +        L +   +    +      +    +  + E     
Sbjct: 119 NTAPYREGGYQEQGYSTDDLYDTADDLLAAVNSGDRTELVYSLGEAYLNYMGIVEAQLAR 178

Query: 203 TGFAQI--------LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            G+             +GR + +    +    + +DE+ H+  G  V+ Q+ I  P +  
Sbjct: 179 GGYLSFDQMIELKATQMGRDSVLESFQQAIGKVRQDETRHIENGRWVMKQLAIAEPDIVA 238

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETM----PKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             ++ +    +    L +  Y  +      P           +  + +I   R  Q G
Sbjct: 239 DVYEPRMEEYVENRLLSDPLYDDQPFEGYDPDRIGHQLVQYLQDTIDYIGAERFDQYG 296


>gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
 gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
          Length = 210

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
              W P ++    D A W+    L+DDER    R    F + E  V  +I       +  
Sbjct: 29  AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84

Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
                   YL + AFEEA H+  F+  + ++G+ E    +++R +  + A       +  
Sbjct: 85  EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA----NKMVGIAEQ 223
            L           +    ++    +  + EGM   TG+    +  R+        G+ E 
Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGY---YAWHRSVWNAQSFPGMQEL 194

Query: 224 YQYIMRDE 231
            + I  DE
Sbjct: 195 VRRIGDDE 202


>gi|70946075|ref|XP_742789.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
           chabaudi]
 gi|56521965|emb|CAH76799.1| ribonucleotide reductase small subunit, putative [Plasmodium
           chabaudi chabaudi]
          Length = 211

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 13/178 (7%)

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMV 218
           +  L+Y       ++     +A+  F   L + Y+    + F  G + + S       + 
Sbjct: 23  DQVLKYESVFKKQNWLYNEFEANIPFYNKLILLYISK--VLFNGGLSIVSSYCKENGILP 80

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +   Y  I RDE L  +F +   N       HL  K   +        A  LE  +  E
Sbjct: 81  CLTSVYDKIQRDEYLQGDFSVMCCN-------HLNNKLKYENVLDYFKTAVDLEYNFCVE 133

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW--MSEVIDLKKEKN 334
            +    + +     +Q++Q++A+     +     +  ++ PF W   S++I  +  KN
Sbjct: 134 MLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-SKYPFTWKEFSKIIVSENAKN 190


>gi|313116866|ref|YP_004037990.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM
           11551]
 gi|312294818|gb|ADQ68854.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM
           11551]
          Length = 317

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 22/224 (9%)

Query: 45  KYLSACNNHWMPTE-VP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
            + +A   HW P+E +P   +++D     + + L + +  +++  +  F + E  V  ++
Sbjct: 21  YFKNAVYRHWDPSEDIPQTLLKEDRTNLLTTDDLDEQQFDLLRSQIALFGAGEEAVTEDL 80

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
              +   L + + + ++  Q +EEA H+  F      +     E        P+      
Sbjct: 81  AP-LALVLDDIDAQMFVASQIYEEAKHTQFFDRYWREVIRPVTEERGYEPTSPTDERY-- 137

Query: 161 WALQYTQTLSSPS---FTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRA 214
           ++ QY +             T D  +   +    +++V E +     Y GF    S  R+
Sbjct: 138 FSDQYIELFDRTETAMKRLVTDDTPENRAKAFCHYHLVIESVLAQTAYYGFTARYSESRS 197

Query: 215 NK---------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                      + G+ E   YI  DE  H+ FG+  +  +  E+
Sbjct: 198 EIHNTTDAMPHLPGLLEGISYIRADEGRHVGFGMHSVRTLIHED 241


>gi|289580515|ref|YP_003478981.1| ribonucleoside-diphosphate reductase subunit beta 2 [Natrialba
           magadii ATCC 43099]
 gi|289530068|gb|ADD04419.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natrialba
           magadii ATCC 43099]
          Length = 310

 Score = 65.0 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 11/217 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI----KRNLGFFASSESLVANNI 100
            Y +A   HW P E+ ++ D+    +    +D+            +  F + E  V  ++
Sbjct: 20  YYRNAVERHWDPGEIELEQDVENLLAHIEASDEYDQSYWDRTLNGIAKFGAGEDAVTEDL 79

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKA 159
              +   L N + + +L  Q +EEA H+  F      +     +     R  P +     
Sbjct: 80  AP-LATVLDNIDDQLFLTTQLYEEAKHADFFDRYWREVIWTVEDELGWERSNPRNDKWFN 138

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRA 214
           +  ++         +     D  +   +    +++  EG+   TG+  + +         
Sbjct: 139 DPYVELFDRNRKAQYRLLEDDTPENRAKAYCHYHLTVEGILAQTGYYGMQTSYGGEFEEL 198

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             + G+ E +  I  DE  H+ FG++ + ++  E   
Sbjct: 199 PHLPGLVEGFTKIRSDEGRHVGFGMNQLKKLIAEGVD 235


>gi|213028365|ref|ZP_03342812.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93 ESLVA 97
          +++  
Sbjct: 67 DTIQN 71


>gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora]
          Length = 59

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
            Q  P +Y WA++ +      HWMP EVP+ +D   W     LT  ER ++ + 
Sbjct: 7  RKQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTPHERNLLTQI 59


>gi|260662380|ref|ZP_05863275.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553071|gb|EEX26014.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 306

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E           +  A   WA   
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWANGQ 128

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               ++ +  T   + D    + LF+         F        +L + N+M+       
Sbjct: 129 APLQAALTDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188

Query: 226 YIMRD 230
            I RD
Sbjct: 189 LIFRD 193


>gi|184156149|ref|YP_001844489.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|183227493|dbj|BAG28009.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 306

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E           +  A   WA   
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWADGQ 128

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               ++ +  T   + D    + LF+         F        +L + N+M+       
Sbjct: 129 APLQAALTDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188

Query: 226 YIMRD 230
            I RD
Sbjct: 189 LIFRD 193


>gi|213621399|ref|ZP_03374182.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 70

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93 ESLV 96
          +++ 
Sbjct: 67 DTIQ 70


>gi|227515316|ref|ZP_03945365.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
           fermentum ATCC 14931]
 gi|227086330|gb|EEI21642.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
           fermentum ATCC 14931]
          Length = 306

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 20/218 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E           +  A A+     
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE--------TTAAYYAWADGQAPL 131

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              L   +      D  +  L  +    +         GF    ++     +    +  +
Sbjct: 132 QAALIDLTKGIEGDDLMRRGLFLIADTVLC-------AGF--DWAVLTQPALAQTNQMLK 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            I+    +  ++      Q   E P    +    +   
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTK 220


>gi|299783626|gb|ADJ41624.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 306

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 14/185 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E           +  A   WA   
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWADGQ 128

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
               ++    T   + D    + LF+         F        +L + N+M+       
Sbjct: 129 APLQAALXDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188

Query: 226 YIMRD 230
            I RD
Sbjct: 189 LIFRD 193


>gi|76803161|ref|YP_331256.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76559026|emb|CAI50624.1| probable ribonucleoside-diphosphate reductase, beta subunit 2
           [Natronomonas pharaonis DSM 2160]
          Length = 306

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 99/275 (36%), Gaps = 18/275 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD-ERLM--IKRNLGFFASSESLVANNIV 101
            Y +A   HW P ++ +  D    K+    TD  E  +  ++  +  F + E  V  ++ 
Sbjct: 20  YYRNAVERHWDPHDIELDTDRENLKAFLDSTDTPETYLDGLRSGVARFGAGEQAVTEDLA 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +   L + + + ++  Q +EEA H+  F      +     +   +    P+     N 
Sbjct: 80  P-LATALGSIDDQMFVTTQIYEEAKHTDFFDRYWREVIHPVEDALGLDPSSPTDETWFND 138

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSLGRANK---- 216
           A +     +  +          E     +  +++V EG+   TG+  +     A+     
Sbjct: 139 AYEELFDRNEEAMERLLAAPTAEQFAKAYCHYHLVIEGILAQTGYYGMQQSYSADSYPEL 198

Query: 217 --MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
             + G+ + +  I +DE  H+ FG+  +  +  +      K   Q    ++ E   L   
Sbjct: 199 PHLPGLCDGFTKIRQDEGRHVGFGMAKLKALVGDG-----KVDPQLLDDIVGELLPLVDD 253

Query: 275 YAHETMPKGF--VGLNAPSCEQYMQFIANRRCHQI 307
              +   + F  VG+     E +       R  QI
Sbjct: 254 ITTDVGDESFDDVGIPPEELEAFAAEKHTERMEQI 288


>gi|328553050|gb|AEB23542.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
          Length = 93

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPW 322
           ML E    E+ Y  +   +  +   AP  ++++++ AN+  + +G +  F+  + NP   
Sbjct: 1   MLQELYENELEYTEDVYDQVGL---APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV- 56

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAE 348
           ++ +    K  +FF  +   Y++   
Sbjct: 57  INGLSTKTKSHDFFSMKGVGYKKATV 82


>gi|9631114|ref|NP_047784.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822382|gb|AAC70333.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 359

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 75/245 (30%), Gaps = 20/245 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               +  Q+ P KYG +W  Y     N+W   E    DD+  +     L  + +    R+
Sbjct: 28  GPTGNALQIWPPKYGLSWSFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAALRS 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
               A  +  V   I  +      + E       Q   E VH   +  ++         +
Sbjct: 85  FAVLAIGDDAVMKFIDESGLEWEESTE--WLFKDQGARETVHKIVYNKMLQLANHSRDYV 142

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            N +          +  + Y   LS  +    +      FL  +       E   F   F
Sbjct: 143 MNSFTS--------DDFVSYM--LSGETLEFRSDLRKACFLIKMIFC----ERYLFAVPF 188

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
             I  LG  N +    +    +M+DE LH    + ++N IK         E   +     
Sbjct: 189 LIINILGETNAINTCVKINMQVMKDEHLHYLHAVALLNDIKGGR-EAEIAELFCRVGEQF 247

Query: 266 HEATL 270
            +   
Sbjct: 248 VKIVE 252


>gi|329575047|gb|EGG56599.1| hypothetical protein HMPREF9520_01787 [Enterococcus faecalis
           TX1467]
          Length = 116

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
              + +     +L+E    E  Y  E      +G      + ++++ AN+    +G++PL
Sbjct: 7   EQDKLKDWMYNLLYELYENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPL 63

Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFET 338
           F  T    NP   M+ +       +FF  
Sbjct: 64  FADTANDVNPIV-MNGISTGTSNHDFFSQ 91


>gi|213852447|ref|ZP_03381979.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 105

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +E +  +  +L E    EI Y      +          + ++ + AN+    +G E LF 
Sbjct: 2   EELKLFALDLLMELYDNEICYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFP 58

Query: 315 ---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
                 NP    +   +  +  +FF    + Y  G  ++
Sbjct: 59  PEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 97


>gi|257388581|ref|YP_003178354.1| ribonucleoside-diphosphate reductase subunit beta 2 [Halomicrobium
           mukohataei DSM 12286]
 gi|257170888|gb|ACV48647.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Halomicrobium
           mukohataei DSM 12286]
          Length = 300

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 19/260 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y +A   HW P  + + DD    +            ++  +  F + E  V  ++   +
Sbjct: 20  YYRNAVERHWDPAAIDLDDDR---EPLVEAHPATFDHLRSTVAKFGAGERAVTEDLAP-L 75

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
              L +   + YL  Q +EEA H   F+   T++        ++    P+     N A  
Sbjct: 76  SVVLDDAADQAYLSTQLYEEARHLDFFERYWTAVINPVERERDLPVSSPTEDRWVNDAYD 135

Query: 165 YTQTLSSPSFTTGTKDADQEF-LQDLFVFYVVFEGMWFYTGFAQILSLGRANK-----MV 218
                +  +      D   E     L  +++  EG+   T +  +      ++     + 
Sbjct: 136 ELLARTDAAMHRLLDDDTPEHRAIALCHYHLTIEGILAQTAYWGLQQSYGPSEPDLPTLP 195

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G     + I  DE  H+ FG+  + ++  E          Q     + E   L      +
Sbjct: 196 GFTTGLERIRSDEGRHVGFGMSKLRELVAEGVD------PQLLHDTVTELLGLVQQTTTD 249

Query: 279 TMPKGFVGL---NAPSCEQY 295
            +  G       +A   + Y
Sbjct: 250 GLGDGSEETPGPSADDLQNY 269


>gi|289811146|ref|ZP_06541775.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 68

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
           S PE   ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   
Sbjct: 1   SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60

Query: 169 LSSPS 173
           L   +
Sbjct: 61  LIEMT 65


>gi|328480213|gb|EGF49140.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 87

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%)

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             V  E   FY+GF   L     NK+  +AE  + I+RDES+H  +          E P 
Sbjct: 18  ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPE 77

Query: 252 LWTKEFQQKS 261
              ++ Q   
Sbjct: 78  AEQQQLQDWM 87


>gi|327197769|ref|YP_004301467.1| gp134 [Brochothrix phage A9]
 gi|299810369|gb|ADJ53168.1| gp134 [Brochothrix phage A9]
          Length = 132

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +  E       E Q  +  +L++    E+ Y      +  +G  A   + ++++  N+ 
Sbjct: 1   MLTREYTQKQRDELQTFAIELLYKLYTNEMKYTEYLYDE--IGWTA-DVKAFVRYNLNKA 57

Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              +G++ ++       NP   M+ +       +FF      Y  G
Sbjct: 58  LANLGMDAIYPERAQDVNPIV-MTGLSTESSNHDFFSQVGNSYIMG 102


>gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus]
          Length = 65

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +F+A+    ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 1   EFVADMLMLELGFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 52


>gi|60416888|emb|CAD71206.1| ribonucleoside-diphospate reductase small subunit [Bacillus
           subtilis]
          Length = 98

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 26  FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 82

Query: 105 YRHLSNPECRQYLLRQ 120
             H+   + +  L   
Sbjct: 83  AEHVDGHQRKAVLNFM 98


>gi|256389757|ref|YP_003111321.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928]
 gi|256355983|gb|ACU69480.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928]
          Length = 353

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           + Y    +  W    + +  D   +     L    R  I   L      ES V   +  A
Sbjct: 50  DLYNRWESRQWSVAGLDLARDRRRFA---ELRPFARREILSALAELEIGESCVTRTL-SA 105

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
           +  H  +   R YL  Q  +EA H   FQ  ++ +     E         ++  ++ + +
Sbjct: 106 LADHAPDEADRLYLCTQMADEARHVRFFQSYLSDVAGIAAEQL---EPHGAMGGESGFGV 162

Query: 164 QYTQTLSSPSFTTGTKDADQEFL-QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            Y   L+  +    T+  D+      +  ++++ EG+    G   + +L ++ ++  ++E
Sbjct: 163 VYDPLLTRHTAAVRTRPDDRRVWHVAVVSYHLLAEGLLAVAGLRALRALAKSCELTALSE 222

Query: 223 QYQYIMRDESLHLNFG 238
               ++RDE+ H+ FG
Sbjct: 223 GLANVVRDEARHVTFG 238


>gi|9629972|ref|NP_046190.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
 gi|1911280|gb|AAC59033.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
          Length = 349

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 19/249 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +    A  +  Q+ P KYG ++  Y     N+W   E    DD+  +     L  + +  
Sbjct: 28  EPHNEATGNALQIWPPKYGLSYAFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNA 84

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           + R+    A  +  V   I  +  +   + E       Q   E VH   +  ++      
Sbjct: 85  VLRSFAVLAIGDDAVMKFIDESGLKWEESTE--WLFKDQGARETVHKIVYNKML------ 136

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             +L N   +    +  ++  + Y   L   +    +      FL  +       E   F
Sbjct: 137 --QLANYSTDYVMSSFTSDDFVSYM--LGGEALEFYSDHRKACFLIKMIFC----ERYLF 188

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              F  I  LG  N +    +    +M+DE +H    + ++N IK         E     
Sbjct: 189 AVPFLIINILGETNAINTCVKINMQVMKDEHVHYLHAVALLNDIKESANTTAINELFCHI 248

Query: 262 RTMLHEATL 270
                +   
Sbjct: 249 GDQFVKIVE 257


>gi|15211865|emb|CAC51101.1| ribonucleotide reductase small subunit [Bacillus sp. M1918]
          Length = 86

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   +   +++         K  D   L    V  V  E   FY+GF   L     
Sbjct: 4   LQKKARTIVSVYKSI---------KKNDDISLFKGMVASVFLESFLFYSGFYYPLYFYGQ 54

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDV 241
            K++   E    I+RDE++H  +   +
Sbjct: 55  GKLMQSGEIVNLIIRDEAIHGVYVGLL 81


>gi|15211879|emb|CAC51109.1| ribonucleotide reductase small subunit [Bacillus sp. BSG40]
          Length = 86

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%)

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
           S     +  D   L    V  V  E   FY+GF   L      K++   E    I+RDE+
Sbjct: 13  SIYKAVEKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEA 72

Query: 233 LHLNFGIDVINQI 245
           +H  +   +  +I
Sbjct: 73  IHGVYVGLLAQEI 85


>gi|47830|emb|CAA36920.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 101

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            +L E    EI Y      +          + ++ + AN+    +G E LF       NP
Sbjct: 6   DLLMELYDNEIRYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 62

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +   +  +  +FF    + Y  G  ++
Sbjct: 63  AILAALSPNADENHDFFSGSGSSYVMGKTVE 93


>gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia
           bronchialis DSM 43247]
 gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 324

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 23/272 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
             +++     W P  +    D   W+    + DDER  +   +    + E  V  +    
Sbjct: 36  HLFVTGNARFWDPRGIDFSTDALDWR---EMRDDERRFVTYLVAQICAGEEAVTRD---- 88

Query: 104 IYRHLSNPEC------RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +                 YL + AFE+A H+  F+  + + GL   +L  +    P    
Sbjct: 89  VQPFGQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGL-VDDLNPVLDTNPFYRQ 147

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216
                    + L +      T  + +  ++ +  F+ V  G    TG   +  +      
Sbjct: 148 LI------VEELPAALRRMETDPSPENQIRAVITFHQVIGGTLACTGHRMLQRICSAYGI 201

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           + G+    + I  DE  H+ +G     ++   +  L      + S  M     ++   + 
Sbjct: 202 LPGMRTLIRMISTDERRHMAWGTYTCRRLVAADDALADVAVTRMSELMPLALGMI--NWL 259

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                     L+      Y    + RR   IG
Sbjct: 260 DGEFAPLPFDLSTAEFIAYAADRSRRRLDAIG 291


>gi|309806472|ref|ZP_07700477.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
          03V1-b]
 gi|308167145|gb|EFO69319.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
          03V1-b]
          Length = 103

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
          + N++   K    W        N W+P ++P+ +DL  W   N L+ D + +I R     
Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 81

Query: 90 ASSESLVA 97
             +++ A
Sbjct: 82 TLLDTIQA 89


>gi|325002633|ref|ZP_08123745.1| ribonucleotide reductase [Pseudonocardia sp. P1]
          Length = 255

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 92/271 (33%), Gaps = 27/271 (9%)

Query: 43  WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           ++ +++   +  W  TE+   +D A W     LT+ E   +   +  F  +E+ VA  + 
Sbjct: 7   YDHFVTLAASLQWDETEIDFSEDRAAW---PALTEWEHERVLGLIAGFCIAETSVAGQL- 62

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
            +                QA +EA H+  F  + + +    G      ++V      A  
Sbjct: 63  GSYQAAAREDSMEAAFRAQARDEARHARFFDRVASDVAGIPGANPAARQDVLRAQVGAEL 122

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG-MWFYTGFAQILSLGRANK-MVG 219
              +   L + +       A       L+   +V EG +      A + +L   ++ + G
Sbjct: 123 VDLFEHRLPATARQLAEDPAGLTGAVGLYH--MVIEGVVLLAGQHAMLDTLEGLSRPLPG 180

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + +  + ++RDE  H+ FG  ++               ++ +  +L +       +    
Sbjct: 181 VRKGMELVLRDERWHIGFGSRIVQ---------CADIGREDADALLEQGENAAKVWGDLI 231

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            P+                   RR    G++
Sbjct: 232 TPEAIDTAVRQH---------RRRLKAAGIK 253


>gi|1196947|gb|AAA88620.1| unknown protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 101

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            +L E    EI Y      +          + ++ + AN+    +G E LF       NP
Sbjct: 6   DLLMELYDNEIRYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 62

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +   +  +  +FF    + Y  G  ++
Sbjct: 63  AILAAVSPNADENHDFFSGSGSSYVMGKTVE 93


>gi|147800139|emb|CAN68817.1| hypothetical protein VITISV_036653 [Vitis vinifera]
          Length = 924

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +        +Y  +  +     +  E  +   ENPF WM E I L+   NFF+ R+ +YQ
Sbjct: 726 LEFLIEDLYKYQSYKWDX-TVALXYERKYNV-ENPFDWM-EFISLQGNANFFQRRMGDYQ 782

Query: 345 QGAELK 350
           + + + 
Sbjct: 783 KASIMS 788


>gi|313125821|ref|YP_004036091.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
           11551]
 gi|312292186|gb|ADQ66646.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
           11551]
          Length = 297

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 11/238 (4%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +  A   HW P E+ +  D A   + + L       ++  +  F + E  V  ++V
Sbjct: 24  AERYFRHATERHWSPYEIDLAADRA---AISDLGRSAFTQLRATIAMFGAGEENVTEDLV 80

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +    +N   ++++    +EEA H+  F+     +     +   +    P+       
Sbjct: 81  P-LAATTTNKTDQRFVASHIYEEAKHAAFFERYWKDVIRPAEDARGLDPTDPTADRWFTA 139

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSL----GRANK 216
           A +     +  +      D       + +  +++  EG++  TGF  I +          
Sbjct: 140 AYEEIFNRTETAMNQLLDDDTPTNRANAYCHYHLTVEGVFGQTGFHAIEATFDPETDGPS 199

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           + G+ E   ++ +DE  H+ +G++ + ++         + F +++   L E     + 
Sbjct: 200 LPGLVEGISHVRQDEGRHVGYGMNQLAELL--QRTAVERSFVEETVETLAEPVDAVVE 255


>gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
          thailandensis MSMB43]
          Length = 70

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 8  SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLS 48
          S   A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+
Sbjct: 29 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLA 69


>gi|213621705|ref|ZP_03374488.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 52

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
               +++       ++      P     L   +F EAVH+ ++  I ++L 
Sbjct: 2   LTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLC 52


>gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate
          division TM7 single-cell isolate TM7a]
          Length = 71

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
          D  QL P++Y WA+  Y  A  N W P EV +  DLA +K+   L    R+++K+ L 
Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70


>gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 90

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +
Sbjct: 1   WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQ 60

Query: 334 NF-FETRVTEY---QQGAELKWD 352
               E  V+ Y   Q  +E+  D
Sbjct: 61  VAPQEVEVSSYLVGQIDSEVDTD 83


>gi|21686785|ref|NP_663285.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
 gi|21637101|gb|AAM70318.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
          Length = 345

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 21/229 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q+ P  Y  +W  Y     NHW   E    DDL+ ++    +T   +  + ++    A  
Sbjct: 35  QIWPPSYYPSWFYYQQHQANHWFANEHDPLDDLSGFE---KITPAWQNALLQSFAALAIG 91

Query: 93  ESLVANNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           +  V   I       L   E  +     QA  E  H   +  ++    L     F     
Sbjct: 92  DDKVMCLISEN---ELQWEESTKWMFADQAARETTHKIAYNRMLE---LARVSTFFTTDT 145

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           + S    AN+ +                 ++        +  ++ E   F   F  I  +
Sbjct: 146 LTSD-EYANYLMDKVDL----------DVSNVNAKAKFLITMMLCERYLFAAPFLIINLM 194

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           G +  +    +    +M+DE  H    + V++       +++ +   + 
Sbjct: 195 GESGFINTCVKINMQVMKDEHSHYAHSVQVLHDSCQNFENIFNELCAKF 243


>gi|115754707|ref|XP_001199509.1| PREDICTED: similar to putative ribonucleotide reductase small
           subunit, partial [Strongylocentrotus purpuratus]
          Length = 44

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           V    + +   E R +   Q   E +HS  +  +I +   D
Sbjct: 1   VERFSQEVQVAEARCFYGFQIAIENIHSEMYSLLIDTYIKD 41


>gi|226331041|ref|ZP_03806559.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
 gi|225201836|gb|EEG84190.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
          Length = 86

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLK 330
            Y  +      VG      ++++ + AN+    +G E LF       +P    S   D  
Sbjct: 2   KYTEDLY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITDVSPAILSSLSPDAN 58

Query: 331 KEKNFFETRVTEYQQGAEL-----KWD 352
           +  +FF    + Y  G  +      WD
Sbjct: 59  ENHDFFSGSGSSYVIGKTINTEDDDWD 85


>gi|76802850|ref|YP_330945.1| ribonucleoside-diphosphate reductase, beta subunit 3 [Natronomonas
           pharaonis DSM 2160]
 gi|76558715|emb|CAI50308.1| probable ribonucleoside-diphosphate reductase, beta subunit 3
           [Natronomonas pharaonis DSM 2160]
          Length = 316

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 45  KYLSACNNHWMP-TEVP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
            +  A  NHW P  ++    ++ D       +   + E   + R L  F + E  V  ++
Sbjct: 22  YFKHAVYNHWDPYEDIEKALIEQDRKRLIDADEFGETEFEDLMRTLALFGAGEEAVTEDL 81

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
              +   + +   + ++  Q +EEA H+  F      +     +     R  P+      
Sbjct: 82  AP-LMLVVDDINDQMFVSSQIYEEAKHTQFFDRYWREVIHPVADARGFERRAPTDQRF-- 138

Query: 161 WALQYTQTLSS-----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRA 214
           +   Y                  +D     ++    +++  E +   TG+   + S+   
Sbjct: 139 FVDGYVDLFDRTEAAMERLLEPGEDTPTNRVRAYCHYHLTVESVLAQTGYWGIVSSMSPR 198

Query: 215 NK----------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHLWTKEFQQKSR 262
                       + G+ +   +I  DE  H+ FG+  +     E+       +E  Q+  
Sbjct: 199 GSEALREDGMPHLEGLVKGISFIRSDEGRHVGFGMQKVQSHLAEDGVDESVVRETLQELL 258

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            ++ E             P+  V   +    + ++ I +
Sbjct: 259 PLVAETVSATDEVTD---PEPLVEYASEKLTRRIEVITD 294


>gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 88

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                 G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +  
Sbjct: 1   DYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVA 60

Query: 336 -FETRVTEY---QQGAELKWD 352
             E  V+ Y   Q  +E+  D
Sbjct: 61  PQEVEVSSYLVGQIDSEVDTD 81


>gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 80

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTE 342
            +GLN     QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ 
Sbjct: 1   MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSS 60

Query: 343 Y---QQGAELKWD 352
           Y   Q  +E+  D
Sbjct: 61  YLVGQIDSEVDTD 73


>gi|555172|gb|AAA46037.1| herpesvirus saimiri gene 60 homologue (aa 177 to 258); putative
           [Bovine herpesvirus 4]
          Length = 82

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           G+     YI RDE LH      + N +    + PH+           +  EA  +E  + 
Sbjct: 3   GVCLANDYISRDELLHTRAAALLYNTMVSGADKPHML------WVHNLFKEAVEVEHEFI 56

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANR 302
                 G   +N      +++  A+R
Sbjct: 57  -LVKSSGVSAVNVDDIRSFLEATADR 81


>gi|14602365|ref|NP_148912.1| ORF128 RR2A [Cydia pomonella granulovirus]
 gi|14591883|gb|AAK70788.1|U53466_128 ORF128 RR2A [Cydia pomonella granulovirus]
          Length = 362

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 61/218 (27%), Gaps = 13/218 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +  ++ P  Y  +W   +    NHW   E      +      + +    +  + ++    
Sbjct: 34  NRLKIWPPTYTPSWNYLVEHQINHWYANE---HKPMDDLNGFDKIDSAWQNALLQSFAVL 90

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A  +  V + I  +          +     QA  E  H   +  ++    +      N  
Sbjct: 91  AIGDDKVMDLISNSDIEW--EESTKWMFADQAARETTHKIVYNRMLELACVSRSYTVNTL 148

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                          Y             +  +           ++ E   F   F  I 
Sbjct: 149 TSGD--------FSHYIMDCRVLDEFQLPERNEVNDKVLFLSTMILCERYLFAAPFLIIN 200

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +G +  +    +    +M+DE +H    + ++  +K 
Sbjct: 201 LMGESGFINKCVKINMQVMKDEHVHYKHAVQLLMDLKR 238


>gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 81

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330
            +GLN     QY+++I N R   +GL   F+  T+NP PW++  +   
Sbjct: 1   MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSD 48


>gi|239934284|ref|ZP_04691237.1| hypothetical protein SghaA1_39154 [Streptomyces ghanaensis ATCC
           14672]
 gi|291442734|ref|ZP_06582124.1| VlmB [Streptomyces ghanaensis ATCC 14672]
 gi|291345629|gb|EFE72585.1| VlmB [Streptomyces ghanaensis ATCC 14672]
          Length = 330

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  +    GF   SE +    +   +      PE   +   Q  +EA H+  F+  +  L
Sbjct: 74  REALVLEFGFRGLSEEVATRILAPYVAVAPGIPELE-FYATQLIDEARHARVFRNHLVEL 132

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           G+ E  L     E+     +               FT    +  ++F   + VF +V EG
Sbjct: 133 GMPEATLLRDIEEMAVDYHR-------EVLQPVIDFTLDIVERQKDFAGGVAVFAIVIEG 185

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           +                      E  +    DE  HL     ++     ++P     E++
Sbjct: 186 VLAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHVRDHP-----EYR 238

Query: 259 QKSRTMLHEATLL 271
            +   +L     L
Sbjct: 239 PRLMEILRAGVEL 251


>gi|45259565|dbj|BAD12265.1| p53-inducible ribonucleotide reductase small subunit 2 short form
           beta [Homo sapiens]
          Length = 66

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 20  AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 52


>gi|296086891|emb|CBI33064.3| unnamed protein product [Vitis vinifera]
          Length = 301

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
              +   +   M G+    + I RDE LH +F   +    K
Sbjct: 12  FCDIFWKKRGLMPGLTFSNELISRDEGLHCDFACLLYKNRK 52


>gi|225593124|gb|ACN96043.1| ribonucleoside-diphosphate reductase beta subunit [Fischerella sp.
           MV11]
          Length = 53

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           +    +H+ +PE    +  Q F+EA+H+ ++QYII ++   +   
Sbjct: 1   MSTFKKHIPSPEIELCMAEQIFQEAMHNQSYQYIIETVVPSDRRT 45


>gi|289809666|ref|ZP_06540295.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 74

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345
               QY+++I N R   +GL+  F+   NP PW++  +     +    E  V+ Y   Q 
Sbjct: 1   DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 60

Query: 346 GAELKWD 352
            +E+  D
Sbjct: 61  DSEVDTD 67


>gi|296086890|emb|CBI33063.3| unnamed protein product [Vitis vinifera]
          Length = 75

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           +NA    QY++F+A+     IG E  +   ENPF WM E I L
Sbjct: 1   MNATLMSQYIKFVADHLLVAIGYERKYNV-ENPFDWM-EFISL 41


>gi|166367087|ref|YP_001659360.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
          aeruginosa NIES-843]
 gi|166089460|dbj|BAG04168.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
          aeruginosa NIES-843]
          Length = 64

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7  LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWM 55
          +SPI        ++++ +    + ++ QL  ++Y WA   Y     N W+
Sbjct: 14 ISPIFNPAGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWI 63


>gi|404605|gb|AAD10549.1| uncertain [Mycoplasma genitalium]
          Length = 107

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           TK  +     +++    LE  Y  E      +        ++  + A +    +G +  F
Sbjct: 3   TKGDESICFELMYRLIELEKDYLKELYEGFGI---VDDAIKFSVYNAGKFLQNLGYDSPF 59

Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
              E    P  +        +  +FF    + Y  G  
Sbjct: 60  TAAETRIKPEIFAQLSARADENHDFFSGNGSSYVMGVS 97


>gi|6581175|gb|AAF04633.2|AF099142_1 small subunit of ribonucleotide reductase [shrimp white spot
          syndrome virus]
          Length = 100

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 15/48 (31%)

Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
          V+     +     +     P+ +   WE Y       W   E+  + D
Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERD 99


>gi|209523559|ref|ZP_03272113.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
 gi|209495964|gb|EDZ96265.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
 gi|291570482|dbj|BAI92754.1| ribonucleoside-diphosphate reductase beta chain, fragment
          [Arthrospira platensis NIES-39]
          Length = 70

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 3  NNTGLSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
          N   L+PI   +   +V  + M     +++ QL  ++Y WA   Y     N W+
Sbjct: 16 NKMPLNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 69


>gi|328480210|gb|EGF49138.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 101

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
                 ++++ AN+    +G E  F  T    NP   M+ +       +FF      Y+ 
Sbjct: 21  TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVGNGYRL 79

Query: 346 GA--ELKWD 352
           G    ++ D
Sbjct: 80  GQVEAMEDD 88


>gi|58700007|ref|ZP_00374568.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533477|gb|EAL57915.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 74

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           +  Y ++  P E    L   +  E +H   + Y++ ++G+ + E ++ + +  ++  K  
Sbjct: 1   MRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPDSE-YHAFLKYDAMRKKYE 59

Query: 161 WALQYTQT 168
           + L++  +
Sbjct: 60  YMLEFEDS 67


>gi|284051982|ref|ZP_06382192.1| ribonucleoside-diphosphate reductase, beta subunit [Arthrospira
          platensis str. Paraca]
          Length = 53

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7  LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
          L+PI   +   +V  + M     +++ QL  ++Y WA   Y     N W+
Sbjct: 3  LNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 52


>gi|269128957|ref|YP_003302327.1| hypothetical protein Tcur_4771 [Thermomonospora curvata DSM 43183]
 gi|268313915|gb|ACZ00290.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 31/198 (15%)

Query: 73  GLTDDERLMIKR---NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            +T+ ER    R   +  F           N+   I + + + + + Y   Q  +EA H 
Sbjct: 84  KMTEAERKEFGRHNGSWLFSQFLHGEQGALNVSARIVQTVPDLDSKFYAATQCMDEARHV 143

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +   I                             Y       +        D  +   
Sbjct: 144 EAYAKFI-----------------------HEKIGMYYPINQDLAKLLKEALDDSRWDLA 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                V+ EG+      A             + +   Y+M+DE+ H+ FG   +     E
Sbjct: 181 YLGMQVLIEGL----ALAAFGLYRDMATTPLVKQLLAYVMQDEARHVAFGRLALKDYYAE 236

Query: 249 NPHLWTKEFQQKSRTMLH 266
                  E ++      +
Sbjct: 237 LTDKERAEREEFVIEGCY 254


>gi|94309487|ref|YP_582697.1| hypothetical protein Rmet_0542 [Cupriavidus metallidurans CH34]
 gi|93353339|gb|ABF07428.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 360

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 30/184 (16%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
            I + +   + + Y   Q  +EA H   +  ++                      K    
Sbjct: 118 RIVQMVPGMDAKFYAATQTMDEARHVEAYSRLL--------------------HEKVGLL 157

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
              T  L S   TT T   D  +        V+ EG+      A    +    K    A 
Sbjct: 158 YPITPGLKSLLETTLT---DSRWDFCYLGMQVLVEGL----ALAAFQRIRDFAKNPLAAS 210

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHET 279
              Y+M+DES H+ FG   +     +      +E +        ++ E    +  +    
Sbjct: 211 INAYVMQDESRHVAFGRTALRGYYPQLTEAEQREREDFVIEACQLMRERFDQKEVWGRLG 270

Query: 280 MPKG 283
           +P+ 
Sbjct: 271 LPED 274


>gi|209963746|ref|YP_002296661.1| hypothetical protein RC1_0409 [Rhodospirillum centenum SW]
 gi|209957212|gb|ACI97848.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 55/245 (22%)

Query: 45  KYLSACNNHWMP-TEVPMQDDL------------------ALWKSKNGLTDDERLMIKR- 84
            Y       W     +    DL                   +W   + +T+ ER   +  
Sbjct: 41  LYDKGKRQQWDASDRIDWSQDLDPENPMQLPDESLLIFGTPMW---DRMTEAERRRFRHH 97

Query: 85  --NLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
                            I  A I + + + + + Y   Q  +EA H   +  ++      
Sbjct: 98  AQAWQISQFLHGEQGALICTAKIVQTVPDIDSKFYAATQVADEARHVEAYSRLLR----- 152

Query: 142 EGELFN-MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
             E F   Y   P +    + A+                  D+ +        ++ EG+ 
Sbjct: 153 --EKFELAYPINPHLKTLLDQAIS-----------------DRRWDFTYLAMQILIEGL- 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
                A    +   ++    A    Y+M+DE+ H+ FG   +             E ++ 
Sbjct: 193 ---ALAAFQRIRDYSQNPLSAAINAYVMQDEARHVAFGRLALRDYYPHLTQKERDEREEF 249

Query: 261 SRTML 265
            +   
Sbjct: 250 VQEAC 254


>gi|197104688|ref|YP_002130065.1| ribonucleoside-diphosphate reductase beta chain [Phenylobacterium
           zucineum HLK1]
 gi|196478108|gb|ACG77636.1| ribonucleoside-diphosphate reductase beta chain [Phenylobacterium
           zucineum HLK1]
          Length = 367

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 34/206 (16%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYLLR 119
           D   WK    L+ +++    R       S+ L      L +   L       + + Y   
Sbjct: 96  DHPKWK---ALSPEQKADFMRRTTAQTLSQFLHGEQGALMVASQLVSCAPTHDAKLYAAS 152

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+EA H   F   +                                   +  F     
Sbjct: 153 QTFDEARHVEVFHRYL-----------------------MERCHMIYPINPNLKFLLDKV 189

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+ +        ++ EG      F  I        +    +    +MRDE  H+ FG+
Sbjct: 190 LTDERWDLKFIGMQILIEG-LALAAFQTIHETTPDPLLK---QVVGLVMRDEGRHVAFGV 245

Query: 240 DVINQIKIENPHLWTKEFQQKSRTML 265
           + +       P    +E  Q +    
Sbjct: 246 NYLEDWIRALPQAEIEERAQFAYEAC 271


>gi|242069239|ref|XP_002449896.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
 gi|241935739|gb|EES08884.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
          Length = 79

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           +    V +N     QY+ FIA+     +  + ++    NPF WM E+I L+ +
Sbjct: 25  ICNALVRMNGRLMSQYIGFIADYLLMALEHKKMYDVA-NPFDWM-ELISLQGK 75


>gi|269861603|ref|XP_002650501.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220066034|gb|EED43552.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 53

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +  NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 7   HVSNPFDFM-ENISLQGKTNFFERREANYQKG 37


>gi|282861091|ref|ZP_06270156.1| conserved hypothetical protein [Streptomyces sp. ACTE]
 gi|282563749|gb|EFB69286.1| conserved hypothetical protein [Streptomyces sp. ACTE]
          Length = 370

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F                I   + + + + Y   QA +E
Sbjct: 80  PHWAKMTARDRGELRRHYTSWQFSQFLHGEQGAMVCAARIVEAVPDLDAKFYSATQAMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPINDNLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTRPLPKQILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      H
Sbjct: 233 YYKQLGDAELREREEFVIEGCH 254


>gi|70926559|ref|XP_735800.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56509782|emb|CAH82994.1| hypothetical protein PC300265.00.0 [Plasmodium chabaudi chabaudi]
          Length = 106

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +       A  LE  +  E +    + +     +Q++Q++A+     +     +  +
Sbjct: 7   LKYEVLDYFKTAVDLEYNFCVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-S 65

Query: 317 ENPFPW--MSEVIDLKKEKN 334
           + PF W   S++I  +  KN
Sbjct: 66  KYPFTWKEFSKIIVSENAKN 85


>gi|311896139|dbj|BAJ28547.1| hypothetical protein KSE_27350 [Kitasatospora setae KM-6054]
          Length = 323

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 15/193 (7%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  +    GF   SE +    +   +      PE   +   Q  +EA H+  F+  +  L
Sbjct: 66  RDALVLEFGFRGLSEEIATRLLAHYVAIAPGIPELE-FYTTQLVDEARHARVFRNHLVEL 124

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           GL    L     ++ +   +               FT       ++F+  + VF +V EG
Sbjct: 125 GLPAATLLRDIDDMAADYRR-------RVLQPVEDFTLDIVRDQRDFIGGVAVFAIVIEG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           +                      E  +    DE  HL     ++      +P     E++
Sbjct: 178 VLAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHVAAHP-----EYR 230

Query: 259 QKSRTMLHEATLL 271
            +   +L     L
Sbjct: 231 PRLLEILRAGVKL 243


>gi|297157269|gb|ADI06981.1| hypothetical protein SBI_03860 [Streptomyces bingchenggensis BCW-1]
          Length = 369

 Score = 43.8 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E         F                I   + + + + Y   Q  +E
Sbjct: 80  RHWGKMTERDKGELRHHFAAWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                        +          + +   G    D  
Sbjct: 140 ARHAEIYSRFLR-----------------------DKLGTLYPINDNLAALLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGLIRDTTDKPLPRQILTYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYRQLTDAELREREEFVIEGCY 254


>gi|218673203|ref|ZP_03522872.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
          GR56]
          Length = 50

 Score = 43.8 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
          + N++   K    W        N W+P +VP+ +D+  W
Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSW 50


>gi|114800441|ref|YP_760279.1| hypothetical protein HNE_1568 [Hyphomonas neptunium ATCC 15444]
 gi|114740615|gb|ABI78740.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 370

 Score = 43.8 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 79/273 (28%), Gaps = 60/273 (21%)

Query: 39  YGWAWE--------KYLSACNNHWMPT-----EVPMQDD----------LALWKSKNGLT 75
           Y W +E         Y      +W        EVP              L        ++
Sbjct: 46  YNWDYESANAKIRRLYELGKRFNWNAELDVDWEVPFDKSKGPSQAGLNPLHDHPVYQAMS 105

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYLLRQAFEEAVHSHTF 131
           +++R            S+ L      + +   L       + + Y   Q F+EA H   F
Sbjct: 106 EEQRNEYAWRSLAQVLSQFLHGEQGAMMVASQLVSCAPTYDAKLYAASQTFDEARHVEVF 165

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
              + +           Y   PS+    +  L                  D  +      
Sbjct: 166 NKYLRT------RCRVEYPVNPSLKLLLDKIL-----------------TDPRWDLKFIG 202

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
             V+ EG      F  +    R   +    +    +MRDE  H+ FG++ +       P 
Sbjct: 203 MQVLIEG-LALAAFQTMSQTTRDPLLR---QILHLVMRDEGRHVAFGVNYLEDWIKALPE 258

Query: 252 LWTKEFQQKSRT---MLHE---ATLLEIAYAHE 278
              +E  Q +     ++ E   +T++E  +  +
Sbjct: 259 EQIEERAQFAFEACAIMRERLFSTIVEEEFGFD 291


>gi|7258402|emb|CAB77448.1| aerobic ribonucleotide reductase small subunit [Pectobacterium
           carotovorum]
          Length = 94

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182
           ++  D   +F+       I  +A     Y  +L   +        GT   +         
Sbjct: 1   NIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVTVNLH 60

Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
             ++ L    +     E + FY  FA   +    
Sbjct: 61  TLKKQLYICLMSVNALEAIRFYVSFACSFAFAER 94


>gi|7532771|emb|CAB87138.1| aerobic ribonucleotide reductase class Ib small subunit [Yersinia
           pestis]
 gi|7532775|emb|CAB87140.1| aerobic ribonucleotide reductase class Ia small subunit [Yersinia
           pseudotuberculosis]
          Length = 94

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 16/94 (17%)

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182
           ++  D   +F+       I  +A     Y   L   +        GT   +         
Sbjct: 1   NIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVVVKLR 60

Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
             ++ L    +     E + FY  FA   +    
Sbjct: 61  DLKKQLYLCLMSVNALEAIRFYVSFACSFAFAER 94


>gi|320008578|gb|ADW03428.1| hypothetical protein Sfla_1994 [Streptomyces flavogriseus ATCC
           33331]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 46/202 (22%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F                I   + + + + Y   Q  +E
Sbjct: 80  PHWAKMTERDRGELRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                         G    D  
Sbjct: 140 ARHAEIYARFL-----------------------HEKVGMLYPINDHLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG      F  I             +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTTQPLPK---QILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYKQLSDAERREREEFVIEGCY 254


>gi|154252074|ref|YP_001412898.1| hypothetical protein Plav_1622 [Parvibaculum lavamentivorans DS-1]
 gi|154156024|gb|ABS63241.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 366

 Score = 43.5 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 38/237 (16%)

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVL----AIYRHLSNPECRQYLLRQAFEE 124
                ++  E+  ++++   +  S+ +      L     I   + + + + Y   Q  +E
Sbjct: 81  AQFEKMSRKEKANVRKHFQAWQLSQFMQGEQGALICTAKIVTQVPDMDSKFYASTQVIDE 140

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H  +++ ++                      K   A   T+ L      T     D  
Sbjct: 141 ARHVESYKRLLE---------------------KFQLAYPMTKPLQDLIEQTLL---DSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        VV EG      FAQ   +    +    A    Y+M+DES H+ FG   +  
Sbjct: 177 WDMTYLGMQVVIEG-LALASFAQ---IRDNAQNPLAAAVNAYVMQDESRHVAFGRLALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH------EATLLEIAYAHETMPKGFVGLNAPSCEQY 295
              +       E ++      +      +A  +      + +  G    N+    ++
Sbjct: 233 YYPQLTEKERDEREEFLLEASYLMRDRFDAVEVWKNLGLDPVACGEHMYNSGFMTKF 289


>gi|254387631|ref|ZP_05002870.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294814984|ref|ZP_06773627.1| Hypothetical protein SCLAV_4151 [Streptomyces clavuligerus ATCC
           27064]
 gi|326443355|ref|ZP_08218089.1| hypothetical protein SclaA2_19918 [Streptomyces clavuligerus ATCC
           27064]
 gi|197701357|gb|EDY47169.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327583|gb|EFG09226.1| Hypothetical protein SCLAV_4151 [Streptomyces clavuligerus ATCC
           27064]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 52/213 (24%), Gaps = 28/213 (13%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPEC 113
            P E     D   W   +     +      +  F                I     + + 
Sbjct: 69  TPDEALAVHDTPYWTKMSARERADLHRHMASWQFSQFLHGEQGAMVCAARIVESAPDLDA 128

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + Y   Q  +EA H+  +   +                        +          +  
Sbjct: 129 KFYSATQTMDEARHAEIYARFL-----------------------QDKVGMVYPINDNLQ 165

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
              G    D  +        V+ EG      F  I  L          +   Y+M+DE+ 
Sbjct: 166 GLLGDTLRDSRWDMPYLGMQVLIEG-LALAAFGLIRDLTDKPLPK---QILAYVMQDEAR 221

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
           H+ FG   +     E      +E ++      +
Sbjct: 222 HVAFGRMALRDYYRELSDAELREREEFVIEGCY 254


>gi|68010653|ref|XP_670832.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486449|emb|CAH96459.1| hypothetical protein PB000804.01.0 [Plasmodium berghei]
          Length = 65

 Score = 42.7 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
          ++    ++++LN  S+   L P+ Y   W  Y  A  + W  
Sbjct: 24 QKTKESNEKILNKESNRFTLHPIIYPEVWNFYKKAEASFWTA 65


>gi|27357032|gb|AAN86693.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
          Length = 48

 Score = 42.7 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +  K  Q  +  ++ +A  +E A+  E +    +G+N+ S + Y+QF+
Sbjct: 1   MANKPCQDDAHEIISDAVDIETAFFREALKTPLLGMNSDSMKLYIQFV 48


>gi|182436000|ref|YP_001823719.1| hypothetical protein SGR_2207 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464516|dbj|BAG19036.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F                I   + + + + Y   Q  +E
Sbjct: 80  PHWAKMTERDRGELRTHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPVNDNLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYGQLSDAELREREEFVIEGCY 254


>gi|326776624|ref|ZP_08235889.1| hypothetical protein SACT1_2457 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656957|gb|EGE41803.1| hypothetical protein SACT1_2457 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F                I   + + + + Y   Q  +E
Sbjct: 80  PHWAKMTERDRGELRTHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPVNDNLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYGQLSDAELREREEFVIEGCY 254


>gi|194015851|ref|ZP_03054466.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus ATCC 7061]
 gi|194012206|gb|EDW21773.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus ATCC 7061]
          Length = 373

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 17/180 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNH--WMPTEVPMQDDLALWKS---KNGLTDD-ERL 80
             + V++++P+++    +    +      W+  E     D+           LT   ER 
Sbjct: 152 PNAAVDRIVPIQHHE--DILKVSVEPFFEWVIDETGFIGDVPQIDGATFVQDLTPYIERK 209

Query: 81  MIKRNLG-FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
           +   N G   A+         V  I   +  PE R+ +     E A+H  T  Y+I + G
Sbjct: 210 LFTVNTGHALAAYVGYQQ--GVQTIKEAVDTPEIRKVV-----EGALH-ETGSYLIDTYG 261

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            ++ E     +++      A  + + T+   SP    G  D      + +     + +G+
Sbjct: 262 FEKEEHDAYIQKIIKRFENAFISDEVTRVARSPLRKLGADDRLIGPAKKIKQPVYLIKGI 321


>gi|302554117|ref|ZP_07306459.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471735|gb|EFL34828.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces
           viridochromogenes DSM 40736]
          Length = 370

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F           I    I   + + + + Y   Q  +E
Sbjct: 80  RHWAKLTERDKGELRRHYASWQFSQFLHGEQGAMICAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGLLYPINDNLQALLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG      F  I             +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYKQLTDAELREREEFVIEGCY 254


>gi|297192107|ref|ZP_06909505.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151205|gb|EFH31021.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 369

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F                I   + + + + Y   Q  +E
Sbjct: 80  RHWAKMTERDKGELRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPINDNLQSLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   YIM+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYIMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYQQLSDAELREREEFVIEGCY 254


>gi|7532769|emb|CAB87137.1| aerobic ribonucleotide reductase class Ia small subunit [Yersinia
           enterocolitica]
          Length = 94

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 16/94 (17%)

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182
           ++  D   +F+       I  +A     Y   L   +        GT   +         
Sbjct: 1   NILNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKPVVVNLR 60

Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
             ++ L    +     E + FY  FA   +    
Sbjct: 61  ELKKQLYLCLMSVNALEAIRFYVSFACTFAFAER 94


>gi|29828831|ref|NP_823465.1| hypothetical protein SAV_2289 [Streptomyces avermitilis MA-4680]
 gi|29605936|dbj|BAC70000.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 327

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  +    GF   SE +    +   +      PE   +   Q  +EA H+  F+  +  L
Sbjct: 70  RDALVLEFGFRGLSEEIATRLLGHYVAIAPGVPELE-FYATQLIDEARHARVFRNHLVEL 128

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVVF 196
           G+  G L     E+         A  Y + +  P   FT        +F   + VF +V 
Sbjct: 129 GMPAGTLLKDIDEM---------AADYRKRVLDPVVDFTLDIVRDQADFPGGVAVFAIVI 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG                       E  +    DE  HL     ++    +E+P     E
Sbjct: 180 EGALAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHAVEHP-----E 232

Query: 257 FQQKSRTMLHEATLL 271
           ++ +   +L     L
Sbjct: 233 YRPRLLEILRAGVRL 247


>gi|213855388|ref|ZP_03383628.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. M223]
          Length = 108

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  K   + +        +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64

Query: 71 KNGLTDDERL 80
             L + E+L
Sbjct: 65 --ALPEHEKL 72


>gi|302542560|ref|ZP_07294902.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460178|gb|EFL23271.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 380

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 50/208 (24%), Gaps = 40/208 (19%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W   +     E      +  F                I     + + + Y   Q  +E
Sbjct: 91  PHWDRMSDRERGELRRHAASWQFSQFLHGEQGAMVCAARIVESAPDLDAKFYSATQTMDE 150

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                        +          +     G    D  
Sbjct: 151 ARHAELYGRFLR-----------------------DKIGMLYPINDNLQELLGDTLRDSR 187

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHLNFG 238
           +        V+ EG          L+L     +          +   Y+M+DE+ H+ FG
Sbjct: 188 WDMAYLGMQVLIEG----------LALAAFGLIRDTTDKPLPKQLLAYVMQDEARHVAFG 237

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH 266
              +     +      +E ++      +
Sbjct: 238 RMALRDYYRDLTDAELREREEFVIEGCY 265


>gi|114570180|ref|YP_756860.1| hypothetical protein Mmar10_1630 [Maricaulis maris MCS10]
 gi|114340642|gb|ABI65922.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 363

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 36/202 (17%)

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANN----IVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           + +T  ER+  +R+   +  S+ +            I   + + + + Y   Q  +EA H
Sbjct: 84  DKMTKKERIEFRRHAQAWNISQFMQGEQAALICAAKIVESVPDLDAKFYAATQVMDEARH 143

Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
              ++ ++T  G+     E      +     ++ ++     Q                  
Sbjct: 144 VEAYKNLMTKFGVAYPMTEPLRQLVDQALRDSRWDFTYLAMQ------------------ 185

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                   VV EG      F  I  L +            Y+M DE+ H+ FG   +   
Sbjct: 186 --------VVIEG-LALAAFGTIRDLAQNPLAK---MVNAYVMEDEARHVAFGRLSLRDY 233

Query: 246 KIENPHLWTKEFQQKSRTMLHE 267
                     E ++      + 
Sbjct: 234 YPHLTQAERDEREEFLVEACYH 255


>gi|223954268|gb|ACN30264.1| UL40 [Anatid herpesvirus 1]
          Length = 46

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           IGL PLF        +    +   ++ NFFE R T Y  G+ L  
Sbjct: 2   IGLAPLFDEPPPKHDFPLAFMATSQQTNFFERRNTTYA-GSVLND 45


>gi|328710829|ref|XP_003244373.1| PREDICTED: hypothetical protein LOC100575936 [Acyrthosiphon pisum]
          Length = 66

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR--VTEY 343
           + Y+   A+R   ++G +       +PF    E+   + + NFFE R   T Y
Sbjct: 8   KIYIGDFADRLLKELGFQQFTGRQTHPF---MELTPQQGKTNFFERRLSNTNY 57


>gi|239982288|ref|ZP_04704812.1| hypothetical protein SalbJ_22849 [Streptomyces albus J1074]
 gi|291454133|ref|ZP_06593523.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357082|gb|EFE83984.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 368

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124
             W         E      +  F           I    I   + + + + Y   Q  +E
Sbjct: 80  RHWARMTERDKAELRRHYASWQFSQFLHGEQGAMICAARIVESVPDMDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPVNDNLQSLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG      F  I             +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYRQLTDAELREREEFVIEGCY 254


>gi|157691164|ref|YP_001485626.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus SAFR-032]
 gi|167017353|sp|A8F9Z9|MTLD_BACP2 RecName: Full=Mannitol-1-phosphate 5-dehydrogenase
 gi|157679922|gb|ABV61066.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus SAFR-032]
          Length = 373

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 17/180 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNH--WMPTEVPMQDDLALWKS---KNGLTDD-ERL 80
             + V++++P+++    +    +      W+  E     D+           LT   ER 
Sbjct: 152 PNAAVDRIVPIQHHE--DILKVSVEPFFEWVIDETGFIGDVPQIDGATFVQDLTPYIERK 209

Query: 81  MIKRNLG-FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
           +   N G   A+         V  I   +  PE R     Q  E A+H  T  Y+I + G
Sbjct: 210 LFTVNTGHALAAYVGYQQ--GVQTIKEAVDTPEIR-----QVVEGALH-ETGSYLIDTYG 261

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             + E     +++         + + T+   SP    G  D      + +     + +G+
Sbjct: 262 FKKEEHDAYIQKIIKRFENVFISDEVTRVARSPLRKLGADDRLIGPAKKMKQPVYLIKGI 321


>gi|110834277|ref|YP_693136.1| hypothetical protein ABO_1416 [Alcanivorax borkumensis SK2]
 gi|110647388|emb|CAL16864.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 370

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 43/253 (16%)

Query: 68  WKSKNGLTDDERLMIK-RNLGFFASSE---SLVANNIVLA-IYRHLSNPECRQYLLRQAF 122
           W     L+D+E+L     NL +   ++         +V + +     + + + Y   Q F
Sbjct: 103 WSVFESLSDEEKLRFGWHNLAW-TLAQFVHGEQGALLVASQLASCAPSYDAKLYAASQTF 161

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +EA H   F   +                             +     +         +D
Sbjct: 162 DEARHVEVFTRYL-----------------------QEKVGIFYPVNPNLKLLLDKILSD 198

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             +        ++ EG+      A   +L    +   + +    ++RDE+ H+ FG++ +
Sbjct: 199 PRWDLKFIGMQIIIEGL----ALAAFNTLQMTAQDPQLKQIIHLVIRDEARHVTFGVNYL 254

Query: 243 NQIKIENPHLWTKEFQQKSRT--------MLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
                       +E  Q +          ++      E  +  +   +  +        Q
Sbjct: 255 ESFVETLTEEEKEERAQFAFEACVVMRERLISTEVFEEFGWNADEAREQVLSST--IMVQ 312

Query: 295 YMQFIANRRCHQI 307
           +   +  R    +
Sbjct: 313 FRNLLFTRIMPNL 325


>gi|332529283|ref|ZP_08405246.1| hypothetical protein HGR_05216 [Hylemonella gracilis ATCC 19624]
 gi|332041293|gb|EGI77656.1| hypothetical protein HGR_05216 [Hylemonella gracilis ATCC 19624]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 86/285 (30%), Gaps = 52/285 (18%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES---LVAN 98
           A E Y  A N  W P  V        W        +    I + + +   +E+   LV  
Sbjct: 147 AAELYAQAVNAQWNPDTV------IDWDDAPEPPPEIEDAIVQVMTYMIENENAALLVPA 200

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
             +  ++ H    E +  L  Q  +EA H   F   I   G +                 
Sbjct: 201 RFLGQLHPHYR--ELQAALAIQVADEARHIDVFTRRIRRHGREPA--------------- 243

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                     LS+       K    E    +  F +   G      F  +L   +     
Sbjct: 244 ----------LSTAGGQASLKSLLDEPDFSVASFLLSVLG---EGSFVNLLQFLQTEAPD 290

Query: 219 GIAEQY-QYIMRDESLHLNFG-IDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIA 274
            +  Q  +   RDE+ H+  G   ++ ++  E    H   +   Q+   +   A L E  
Sbjct: 291 PLTRQICRLAARDEARHVALGMSHLLYRLAREPGFQHRLAQSVAQRHDALAGTAGLNEEV 350

Query: 275 Y------AHETMPKGFVGLNAPSCEQYMQFIANRR---CHQIGLE 310
           +      A   +    +       +Q M+ +A+ R     ++G  
Sbjct: 351 FDALILVAAGELTPTAIARGYARVQQLMRDMADGRYAKLVRLGFA 395


>gi|239815757|ref|YP_002944667.1| hypothetical protein Vapar_2779 [Variovorax paradoxus S110]
 gi|239802334|gb|ACS19401.1| hypothetical protein Vapar_2779 [Variovorax paradoxus S110]
          Length = 302

 Score = 41.2 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 63/225 (28%), Gaps = 35/225 (15%)

Query: 37  LKYGWAWEKYLSACNNHWMP-TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           ++Y   W     A +  W P  ++    DL     K  L  + R          A  E  
Sbjct: 22  IEYPEVWRLCTQARDLAWNPIADIDYS-DLQ----KADLPPEVRKAGAEWWSLRAWMEHG 76

Query: 96  VANNIVLAIYRHLSNP---ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
                   +   +      E +Q++     EE  H      I  +L              
Sbjct: 77  ATPYGAERLREAIFQHQPFEVKQHITNFIAEEFRHHEASFRIADALA------------- 123

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                      +Y     S  F         E  +    F+        +   +  L   
Sbjct: 124 -----------EYEPMPRSDYFKDIIPRFHDESDEKAMSFFAGLSVNTLFEQLSGDLLQA 172

Query: 213 R--ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           R    +   I E  + I+RDE+ H+ FG  ++ +   E P    +
Sbjct: 173 RYENARFDSIREVCRLILRDEARHIQFGRIIMRRFFSELPSEEKR 217


>gi|195391948|ref|XP_002054621.1| GJ22707 [Drosophila virilis]
 gi|194152707|gb|EDW68141.1| GJ22707 [Drosophila virilis]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  DD+   +    L+D
Sbjct: 732 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 771


>gi|195062926|ref|XP_001996279.1| GH22280 [Drosophila grimshawi]
 gi|193899774|gb|EDV98640.1| GH22280 [Drosophila grimshawi]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  DD+   +    L+D
Sbjct: 631 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 670


>gi|302539431|ref|ZP_07291773.1| VlmB [Streptomyces sp. C]
 gi|302448326|gb|EFL20142.1| VlmB [Streptomyces sp. C]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 17/198 (8%)

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
            +++   Q  +EA H+  F+  +  LG+ E  L    +E  +          YT+ + +P
Sbjct: 103 EQEFFTTQVVDEARHAMIFRKHLVDLGVPEAGLLGFIKEQGA---------DYTRRVLNP 153

Query: 173 --SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMR 229
              F TG    + +F+  + VF +V EG+      A  LS  +   +    AE  +    
Sbjct: 154 IAEFATGVVRDEGDFIGAVAVFTIVIEGVLAP---AAELSERKWTLLDPAAAEIARGASI 210

Query: 230 DESLHLNFGIDVINQIKIENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           DE  HL  G  ++ +    NP    +  E  ++ R +  E    E     E + +  +  
Sbjct: 211 DEIRHLTVGSSIVREHLARNPSYRPRLIELIRRGRRLWDELPSEEFVLEREELFQQGMFA 270

Query: 288 NAPSCEQYMQFIANRRCH 305
           +A     Y  F   R   
Sbjct: 271 HAELLRDYEVFPGCRLLE 288


>gi|309805923|ref|ZP_07699955.1| putative ribonucleoside-diphosphate reductase 2 subunit beta
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167699|gb|EFO69846.1| putative ribonucleoside-diphosphate reductase 2 subunit beta
           [Lactobacillus iners LactinV 03V1-b]
          Length = 99

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320
             +L++   LE AY  E      +   A    ++  + A +    +G +  F   E +  
Sbjct: 3   FALLYKLIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIA 59

Query: 321 PWMSEVIDL--KKEKNFFETRVTEYQQG 346
           P +   +     +  +FF    + Y  G
Sbjct: 60  PEVLAQLSARADENHDFFSGNGSSYVMG 87


>gi|157105736|ref|XP_001649004.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
 gi|108880035|gb|EAT44260.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT-EV 59
           M  NT  + +Q  E R+   D  +           P K+  +W  Y       W+P  ++
Sbjct: 403 MTENTDWNLVQLPEIRIAAIDNGLA---------FPFKHPDSWRAYPYHWA--WLPQAKI 451

Query: 60  PMQDDLAL 67
           P   D+  
Sbjct: 452 PFSQDIKD 459


>gi|254429013|ref|ZP_05042720.1| hypothetical protein ADG881_2243 [Alcanivorax sp. DG881]
 gi|196195182|gb|EDX90141.1| hypothetical protein ADG881_2243 [Alcanivorax sp. DG881]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 33/183 (18%)

Query: 68  WKSKNGLTDDERLMI---KRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123
           W +   L++DE+L                      +V + +       + + Y   Q F+
Sbjct: 105 WDTFEALSEDEKLRFGWHNLAWMLAQFVHGEQGALLVASQLASCAPTYDAKLYAASQTFD 164

Query: 124 EAVHSHTFQ-YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EA H   F  Y+   +G+       +Y   P++ +  +  L                  D
Sbjct: 165 EARHVEVFTRYLQEKIGI-------LYPVNPNLKSLLDKILS-----------------D 200

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             +        ++ EG      F  +    +   +    +    ++RDE+ H+ FG++ +
Sbjct: 201 PRWDLKFIGMQIIIEG-LALAAFNTLKMTAQDPLLK---QIIHLVIRDEARHVTFGVNYL 256

Query: 243 NQI 245
              
Sbjct: 257 EDF 259


>gi|145638051|ref|ZP_01793677.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
          influenzae PittHH]
 gi|145268754|gb|EDK08731.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
          influenzae PittHH]
          Length = 73

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  K   + +        +V +    KY    +      +  W P EV +  D   +  
Sbjct: 6  FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64

Query: 71 KNGLTDDERLM 81
             L + E+ +
Sbjct: 65 --ALPEHEKHI 73


>gi|195451115|ref|XP_002072774.1| GK13780 [Drosophila willistoni]
 gi|194168859|gb|EDW83760.1| GK13780 [Drosophila willistoni]
          Length = 838

 Score = 40.8 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  +D+        L+D
Sbjct: 713 FPFKHPDSWRAYPYHWA--WLPQAKVPFSEDIKD-HVLPQLSD 752


>gi|294631375|ref|ZP_06709935.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292834708|gb|EFF93057.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 51/213 (23%), Gaps = 28/213 (13%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPEC 113
            P E  +      W         E      +  F           I    I     + + 
Sbjct: 74  TPEEAMILHGTPYWSRMTDRDKGELRRHFASWQFSQFLHGEQGAMICAARIVESAPDLDA 133

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
           + Y   Q  +EA H+  +   +                                   +  
Sbjct: 134 KFYSATQTMDEARHAEIYARFL-----------------------HEKIGLVYPIDDNLR 170

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
              G    D  +        V+ EG+      A    +          +   Y+M+DE+ 
Sbjct: 171 SLLGDTLRDSRWDMPYLGMQVLIEGL----ALAAFGMIRDTTHKPLPRQILAYVMQDEAR 226

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
           H+ FG   +     +      +E ++      H
Sbjct: 227 HVAFGRMALRDYYKQLTDAELREREEFVIEGCH 259


>gi|254382285|ref|ZP_04997645.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194341190|gb|EDX22156.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 46/202 (22%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E         F                I   + + + + Y   Q  +E
Sbjct: 80  RHWAKLTEKDKGELRRHYTAWNFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  F   +                                   S     G    D  
Sbjct: 140 ARHAEIFGRFL-----------------------HEKVGMLYPVNDSLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG      F  I             +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      H
Sbjct: 233 YYKQLTDAELREREEFVIEGCH 254


>gi|29829495|ref|NP_824129.1| hypothetical protein SAV_2953 [Streptomyces avermitilis MA-4680]
 gi|29606603|dbj|BAC70664.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 368

 Score = 40.4 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 28/200 (14%)

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAV 126
           W         E      +  F                I   + + + + Y   Q  +EA 
Sbjct: 82  WAKLTDRDKGELRKHYASWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDEAR 141

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+  +   +                                   +     G    D  + 
Sbjct: 142 HAEIYGRFL-----------------------HEKIGMLYPVNDNLQALLGDTLRDARWD 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                  V+ EG      F  I             +   YIM+DE+ H+ FG   +    
Sbjct: 179 MPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYIMQDEARHVAFGRMALRDYY 234

Query: 247 IENPHLWTKEFQQKSRTMLH 266
            +      +E ++      +
Sbjct: 235 SQLSDAELREREEFVIEGCY 254


>gi|289643180|ref|ZP_06475308.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507011|gb|EFD27982.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
          Length = 377

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 54/197 (27%), Gaps = 31/197 (15%)

Query: 73  GLTDDERLMIKR---NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            L + ER+ ++R      +                + + + +   + Y   Q  +EA H 
Sbjct: 81  RLPEAERITVRRHLAGWLYSQFLHGEQGALVCAAKVVQTVPDIASKFYAATQVVDEARHV 140

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +Q ++                        +    +    +       T   D  +   
Sbjct: 141 EAYQRML-----------------------HDKIKVHYPISAGLRGLLETTIGDSRWDIT 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
                V+ EG+      A         +         Y+++DE+ H+ FG   +     +
Sbjct: 178 YLGMQVMIEGL----ALASFSIQRDRMRDPLARALNAYVLQDEARHVAFGRLALRDYYGQ 233

Query: 249 NPHLWTKEFQQKSRTML 265
                 +E +  +    
Sbjct: 234 LSTAELREREDFAVEAC 250


>gi|239944254|ref|ZP_04696191.1| hypothetical protein SrosN15_24850 [Streptomyces roseosporus NRRL
           15998]
 gi|239990709|ref|ZP_04711373.1| hypothetical protein SrosN1_25607 [Streptomyces roseosporus NRRL
           11379]
 gi|291447725|ref|ZP_06587115.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350672|gb|EFE77576.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 370

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 48/202 (23%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         +      +  F                I   + + + + Y   Q  +E
Sbjct: 80  PHWAKMTEKDRGQLRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                                   +     G    D  
Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPVNDNLRGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG+      A    +          +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYKQLSDAELREREEFVIEGCY 254


>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 30

 Score = 40.0 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRML 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25


>gi|269126485|ref|YP_003299855.1| putative metal-dependent hydrolase [Thermomonospora curvata DSM
           43183]
 gi|268311443|gb|ACY97817.1| putative metal-dependent hydrolase [Thermomonospora curvata DSM
           43183]
          Length = 311

 Score = 39.6 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 21/177 (11%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L + E+  I                N V A   ++++   RQ +     +E VHS + Q 
Sbjct: 55  LPEGEKWFI----------------NCVKAAMPYITDERLRQEIKGFIGQEMVHSRSHQG 98

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +I  L L  G +       P+    A W  +              +   +         Y
Sbjct: 99  VIDKLLLANG-IDATVVTKPAAQGNAEWPAKMEALKKRHPRLYKQRLLFELGAVAAIEHY 157

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
               G W          L  A     + +  ++   +E  H +   DV   +  + P
Sbjct: 158 TAVLGQW----VMDNDKLDAAGVDPTMLDLLRWHGAEEVEHRSVVFDVYRHLGGKYP 210


>gi|330835553|ref|YP_004410281.1| hypothetical protein Mcup_1694 [Metallosphaera cuprina Ar-4]
 gi|329567692|gb|AEB95797.1| conserved hypothetical protein [Metallosphaera cuprina Ar-4]
          Length = 335

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 12/223 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE--SLVANN 99
           AW+ Y  A    W   ++       + +  +GL   +RL I       ++ +  + V   
Sbjct: 29  AWQLYRRAKREQWDEEDIDWNK---IKEIASGLDRKQRLAIAYWWSLLSNFDNATPVFAY 85

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            V+  + H  +   R  L    ++E  H+      I S+       F   + +  +  KA
Sbjct: 86  AVIKGFEHHLDTAVRGILTTITYDENRHNMVCGLSIDSMMRGFPFQF---KPMDDLERKA 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              +++T    +  +    +   +  L  LF  +++ E            ++ + +K+  
Sbjct: 143 MLNVEWTWYNGARYWRAYLEAYSKYTLDVLFTSFMMGEA----AATTVFTTMSKGSKIEE 198

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           + + ++    DE+ H  F   ++            K   ++ R
Sbjct: 199 MRKAFRNTAVDETRHYAFTHLIMTDGASRMTDEQRKLVTKQVR 241


>gi|52550536|gb|AAU84385.1| transposase [uncultured archaeon GZfos9E5]
          Length = 398

 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAW--------EKYLSACNNHWMPTEVPM 61
           I+ G + + +  + +   R+    L  L              E Y  A    W   +V +
Sbjct: 81  IENGTEVLRLRKRGVPAPRTVRYHLEKLVIDDILSQFNGISEELYRIAKKQRWFVNKVDL 140

Query: 62  QDDLALWKSKNGLTDD 77
             D+  W     + D+
Sbjct: 141 SIDIHDWMYYGDIDDE 156


>gi|330718348|ref|ZP_08312948.1| ribonucleoside-diphosphate reductase beta subunit [Leuconostoc
          fallax KCTC 3537]
          Length = 94

 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
          +     N W+ T VP+ +D   W+    L  DE   + ++L   A+ ES  + 
Sbjct: 24 WQQMVANFWLDTRVPVIEDKTGWE---ALAQDEHDALAQSLADLATLESFQSE 73


>gi|240173220|ref|ZP_04751878.1| hypothetical protein MkanA1_28156 [Mycobacterium kansasii ATCC
           12478]
          Length = 366

 Score = 39.6 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 54/257 (21%)

Query: 38  KYGWAWE--------KYLSACNNHWMPT-EVPMQDDL------------------ALWKS 70
           ++ W ++         Y    +  W     +    D+                   +W +
Sbjct: 25  RFTWEYDDGRARLLSLYQKGKDKQWDAQSRIDWAQDVDPHNPVGLPDEFHPLFGSPMWDA 84

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
            +     E     +   F                I   + + + + Y   Q  +EA H  
Sbjct: 85  ADDARRAEMRQHFQAWQFSQFLHGEQGAMVCAAKIVEVVPDLDAKFYAATQTMDEARHVE 144

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            F   +                      K +      + L   +   G    D  +    
Sbjct: 145 AFSRFL--------------------QDKVDLVYPINKHL---TALLGDTLRDSRWDMPY 181

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
               V+ EG      F  +  +   + +    +   Y+M+DE+ H+ FG   +       
Sbjct: 182 LGMQVLIEG-LALAAFGVLRDMAPPDSLAK--QLLAYVMQDEARHVAFGRISLKDYYSAL 238

Query: 250 PHLWTKEFQQKSRTMLH 266
                 E ++      +
Sbjct: 239 TEAERDEREEFVVDACY 255


>gi|302536897|ref|ZP_07289239.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302445792|gb|EFL17608.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 368

 Score = 39.2 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 46/202 (22%), Gaps = 28/202 (13%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E         F                I   + + + + Y   Q  +E
Sbjct: 80  RHWAKMTERDKGELRRHYSAWNFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  F   +                                   S     G    D  
Sbjct: 140 ARHAEIFGRFL-----------------------HEKVGMLYPINDSLQGLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           +        V+ EG      F  I             +   Y+M+DE+ H+ FG   +  
Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232

Query: 245 IKIENPHLWTKEFQQKSRTMLH 266
              +      +E ++      +
Sbjct: 233 YYKQLTDAELREREEFVIEGCY 254


>gi|296170282|ref|ZP_06851873.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895005|gb|EFG74724.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 366

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 66/257 (25%), Gaps = 54/257 (21%)

Query: 38  KYGWAWE--------KYLSACNNHWMPT-EVPMQDDL------------------ALWKS 70
           ++ W ++         Y    +  W     +    D+                   +W +
Sbjct: 25  RFTWEYDEGRARLLSLYQKGKDKQWDAQSRIDWAQDVDPMNPVGLPDEFHPLFGSPMWDA 84

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
            +     E     +                    I   + + + + Y   Q  +EA H  
Sbjct: 85  ADDARRAEMRQHFQAWQLSQFLHGEQGAMVCAAKIVEVVPDLDAKFYAATQTMDEARHVE 144

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            F  ++                      KA       + L++    T     D  +    
Sbjct: 145 AFSRLL--------------------QEKAGLVYPINKHLTALLDDTL---RDSRWDMPY 181

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
               V+ EG      F  +  +   + +    +   Y+M+DE+ H+ FG   +       
Sbjct: 182 LGMQVLIEG-LALAAFGVLRDMAAPDSLAK--QVLAYVMQDEARHVAFGRISLKDYYSAL 238

Query: 250 PHLWTKEFQQKSRTMLH 266
                 E ++      +
Sbjct: 239 TEAERDEREEFVVDACY 255


>gi|297170371|gb|ADI21405.1| hypothetical protein [uncultured gamma proteobacterium
           HF0010_21A16]
          Length = 390

 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 34/208 (16%)

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYL 117
            ++L  WK+   LTD+E++   R+      S+ L      L +   +         + Y 
Sbjct: 98  HEELDAWKN---LTDEEKIEFDRHETAEVLSQFLHGEQGALLVASQIVSCAPTFNAKMYA 154

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
             Q F+EA H   F   +                             +     +      
Sbjct: 155 ASQTFDEARHVEVFNRYL-----------------------QEKVGFHYPINPNLKALLD 191

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               D+ +        ++ EG+         + L   + ++       Y++RDE+ H+ F
Sbjct: 192 KILTDERWDLKFIGMQIIIEGLALAA--FTNMKLSARDSLLKT--LLHYVIRDEARHVTF 247

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTML 265
           GI+ +            +E  Q +    
Sbjct: 248 GINYLEDFVKTLSPEEIEERAQFAYEAC 275


>gi|240170482|ref|ZP_04749141.1| hypothetical protein MkanA1_14310 [Mycobacterium kansasii ATCC
           12478]
          Length = 423

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 79/295 (26%), Gaps = 65/295 (22%)

Query: 39  YGWAWEKYLSACNNHW-----MPTEVPMQDDLALWKSKNG--------------LTD-DE 78
           +   ++ Y  A +  W     +P E+ +  D    +                  LT  +E
Sbjct: 83  FAEMYDLYRRAVSKQWDGNADLPWELDVTPDNPDAQILPRSFVPFKEIEGFGVRLTALEE 142

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSN----PECRQYLLRQAFEEAVHSHTFQYI 134
           R +      +   S+ +      L     ++      + + Y   Q  +E  H   F   
Sbjct: 143 RNLTWDIAAWL-LSQFMHGEQGALFASAQVTECVHWTDAKLYGATQVMDEGRHLEVFLRY 201

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + +                    K          L     T G  D             +
Sbjct: 202 LDT-----------------KLEKIYTVNDNLFVLIDELMTDGRWD------FKFLGMQI 238

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKIENPHLW 253
           + EG      F  I    R   +    +  + +++DE+ H+++G+  +   I        
Sbjct: 239 MIEG-LALGAFTTIFQQTREPLLK---QLLKMVIQDEARHVHYGVLALRDHITQNISEKE 294

Query: 254 TKEFQQKSRT---------MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +E +              ++HE       +    +P              ++F 
Sbjct: 295 RREREDWVYEVALLMRNRFLMHEVYE---EWFSHKVPLKVWDQQMLDSPSMVKFR 346


>gi|83859232|ref|ZP_00952753.1| hypothetical protein OA2633_12545 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852679|gb|EAP90532.1| hypothetical protein OA2633_12545 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 374

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 29/200 (14%)

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL-AIYRHLSNPECRQYLLRQAFEEAV 126
           W         E     ++       +   A  +    I + + + + + Y   Q  +EA 
Sbjct: 83  WNKMTKKERIELRRHTQSWNISQFLQGEQAALLAASKIVQAVPDLDAKFYAATQVMDEAR 142

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   ++ ++   G+        Y     +    N AL                  D  + 
Sbjct: 143 HVEAYRKLLGKFGV-------AYPMTDPLQGLVNDALS-----------------DSRWD 178

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                  VV EG      F  I  L +            Y+M DE+ H+ FG   +    
Sbjct: 179 VTYLAMQVVIEG-LALAAFGTIRDLAQNPL---ARMVNAYVMEDEARHVAFGRLSLRDYY 234

Query: 247 IENPHLWTKEFQQKSRTMLH 266
            +       E ++      +
Sbjct: 235 PQLTQKERDEREEFLVEACY 254


>gi|307327874|ref|ZP_07607056.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306886392|gb|EFN17396.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 371

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 49/208 (23%), Gaps = 40/208 (19%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124
             W         E         F                I     + + + Y   Q  +E
Sbjct: 80  RHWDRMTERDKGELRHHVAAWQFSQFLHGEQGAMVCAARIVEAAPDLDAKFYSATQTMDE 139

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A H+  +   +                        +    +    +      G    D  
Sbjct: 140 ARHAELYSRFL-----------------------HDKLGTFYPINTDLRTLLGDTLRDSR 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHLNFG 238
           +        V+ EG          L+L     +          +   Y+M+DE+ H+ FG
Sbjct: 177 WDMAYLGMQVLIEG----------LALAAFGLIRDTTDKPLPQQILAYVMQDEARHVAFG 226

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH 266
              +     +      +E ++      +
Sbjct: 227 RMALRDYYRQLSDAELREREEFVIEGCY 254


>gi|289810083|ref|ZP_06540712.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 102

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  K   + +        +V +    KY    +      +  W P EV +  D   +++
Sbjct: 6  FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA 65

Query: 71 KNGLTDDERLMIKR 84
                ++R     
Sbjct: 66 L----PEQRKTYLH 75


>gi|256844765|ref|ZP_05550247.1| ribonucleotide-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613113|gb|EEU18320.1| ribonucleotide-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 64

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 298 FIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AEL 349
           + A +    +G +  F   E   +P  +        +  +FF    + Y  G      + 
Sbjct: 1   YNAGKFLQNLGYDSPFTAEETYVSPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETTDD 60

Query: 350 KWD 352
            WD
Sbjct: 61  DWD 63


>gi|297172511|gb|ADI23482.1| hypothetical protein [uncultured gamma proteobacterium
           HF0770_40P16]
          Length = 386

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 31/199 (15%)

Query: 71  KNGLTDDERLMIKR---NLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAV 126
              L +++RL   R                  +V + +       + + Y   Q F+EA 
Sbjct: 96  LAALPEEDRLEYMRHDQAWALSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQTFDEAR 155

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   F   +                +     K   AL   +TL+ P +            
Sbjct: 156 HVEVFARYL-----------QRIHGLEYPINKNLKALL-DKTLTDPRWDL---------- 193

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                  +V EG+      A   +    +    + +   Y++RDE+ H+ FGI+ + +  
Sbjct: 194 -KFIGMQIVIEGL----ALAAFQTTKETSNCPLLRQLVHYVIRDEARHVTFGINYLTEFL 248

Query: 247 IENPHLWTKEFQQKSRTML 265
                   +E  Q +    
Sbjct: 249 QTLSKEEIEERAQFAYEAC 267


>gi|154250479|ref|YP_001411303.1| hypothetical protein Plav_0023 [Parvibaculum lavamentivorans DS-1]
 gi|154154429|gb|ABS61646.1| hypothetical protein Plav_0023 [Parvibaculum lavamentivorans DS-1]
          Length = 373

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 36/235 (15%)

Query: 70  SKNGLTDDERLMI---KRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEA 125
           S   L++ E++            A         N+  ++   L +P  ++Y   QA EEA
Sbjct: 83  SFEKLSEKEKVRFVNETARWMMSAILHGEQGALNLSASLCHILLDPGAQEYAANQAREEA 142

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            H   F   + +            + +P     AN   +                  +E 
Sbjct: 143 RHVTAFAKYVQA---------RWGKPLPCGETLANLLAEMVNA--------------KEV 179

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI----DV 241
            + +    ++ EG      FA   +  R   +V + +     M DE+ H  FG       
Sbjct: 180 YKKIVGMQLLVEG-LAMGTFATFFNTARDPLLVKLCQ---LAMTDEAFHHKFGKIWADRT 235

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFVGLNAPSCEQY 295
           I ++  E   +         +T+L      E            +  + A   E  
Sbjct: 236 IPKLSQEERDIIEDWAASVFQTLLFNLVNPEQKKLIYADFGLDWKQVQAEMLEAV 290


>gi|186684872|ref|YP_001868068.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467324|gb|ACC83125.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 1102

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 16  RVNVDDKRMLNAR--SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           R  VD + +   +  SD  QL P +    W +   A    W   E+ +  D+
Sbjct: 357 RNEVDTETLWAGQYDSDQRQLYPRRSFEVWRESKKAQAQKWTVEEIELARDI 408


>gi|68076111|ref|XP_679975.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500834|emb|CAI05073.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 319

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 17/187 (9%)

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--------EEAVHSHTFQYI 134
            + +    S   +VA   +L +   +      + ++   F         E  +   +  I
Sbjct: 66  FKIIISLNSQCKMVALECLLNLSAQIPTELIERNIVEILFDMIKDEEKIEENYIDMYIMI 125

Query: 135 ITSL---------GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           I+++          LD  E   +Y    S++   N  L +     +PS      D     
Sbjct: 126 ISNITRCKEGIYKILDINEEGQIYHNTFSVSYYLNKLLFFYFQPITPSINKNMSDKYMHV 185

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
              L     + E M F+   A +  L     ++     +   + + SLH +    +    
Sbjct: 186 SHILINISSIKESMPFFKNVAFLNKLSEQILILERCRTFLPFIMNLSLHKDIHDFIFQSD 245

Query: 246 KIENPHL 252
               P+L
Sbjct: 246 CNMFPYL 252


>gi|146303168|ref|YP_001190484.1| hypothetical protein Msed_0383 [Metallosphaera sedula DSM 5348]
 gi|145701418|gb|ABP94560.1| hypothetical protein Msed_0383 [Metallosphaera sedula DSM 5348]
          Length = 335

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 20/227 (8%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSK----NGLTDDERLMIKRNLGFFASSE--SL 95
           AW+ Y  A    W   ++        W       +GL   +RL I       ++ +  + 
Sbjct: 29  AWQLYRRAKREQWDEEDIN-------WDRVREIASGLDRKQRLAIAYWWSLLSNFDNATP 81

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
           V  + V+  + H  +   R  L    ++E  H+      I S+       F   +    +
Sbjct: 82  VFAHAVIKGFEHHLDTAVRGILTTITYDENRHNMVCGLAIDSMMRGFPFQF---KPQDDL 138

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             KA   +++T    +  +    +   +  L  LF  +++ E            ++ R  
Sbjct: 139 ERKAMLNVEWTWYNGARYWKAYLEAYKKYTLDVLFTSFMMGEA----AATTVFTTMSRGA 194

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           K+   ++ ++    DE+ H  F   ++ Q          +   ++ R
Sbjct: 195 KLEEFSKAFRNTAVDETRHYAFTHLIMTQGASRMNDEQKRLVTKQVR 241


>gi|271967782|ref|YP_003341978.1| hypothetical protein Sros_6522 [Streptosporangium roseum DSM 43021]
 gi|270510957|gb|ACZ89235.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 371

 Score = 38.1 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 56/211 (26%), Gaps = 46/211 (21%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124
            LW   +     E  +      F           I    I   + + + + Y   Q  +E
Sbjct: 80  PLWDRMDARQRQEVRLHGAAWQFSQFLHGEQGAMICSARIVESVPDLDSKFYAATQTMDE 139

Query: 125 AVHSHTFQYIITS---LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           A H+ T+   +     L     E      +     ++ +      Q              
Sbjct: 140 ARHAETYARFLQEKVGLAYPINEHLKALLDNTLSDSRWDMPYLGMQ-------------- 185

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHL 235
                       V+ EG          L+L     M  I       +   Y+M+DE+ H+
Sbjct: 186 ------------VLIEG----------LALAAFGVMRDITTKPLPKQILAYVMQDEARHV 223

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            FG   +     +      +E +       +
Sbjct: 224 AFGRMALRDYYSQLTETELREREDFVIEGCY 254


>gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 25

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 317 ENPFPWMSEVIDLKKEKNFFE 337
            NPFPWMSE+I LKKE+NFFE
Sbjct: 1   TNPFPWMSEIIALKKERNFFE 21


>gi|168044511|ref|XP_001774724.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673879|gb|EDQ60395.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 662

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL-------E 310
           Q++   M+ EA      +A E            S E Y+  + N+   ++G        E
Sbjct: 539 QEEIDRMVQEA----EEFAEEDKKVKERIDARNSLETYVYNMKNQLGDKLGEKISAEDKE 594

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFET 338
            +    +    W+ E    +KE +F E 
Sbjct: 595 TIETAMKEALEWLDENQSAEKE-DFQEK 621


>gi|194767627|ref|XP_001965916.1| GF11648 [Drosophila ananassae]
 gi|190619759|gb|EDV35283.1| GF11648 [Drosophila ananassae]
          Length = 678

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  ++P  +D+        L+D
Sbjct: 553 FPFKHPDSWRAYPYHWA--WLPQAKIPFSEDIKK-HVLPQLSD 592


>gi|295697256|ref|YP_003590494.1| hypothetical protein Btus_2700 [Bacillus tusciae DSM 2912]
 gi|295412858|gb|ADG07350.1| hypothetical protein Btus_2700 [Bacillus tusciae DSM 2912]
          Length = 374

 Score = 37.7 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSNPECRQYLLRQAFEE 124
           W+    L +D    + +N       E +  +     V  I       E + +L  Q  +E
Sbjct: 132 WEKLKPLPEDLEKAVCQNCTLLTQVEFVAGDFPSKWVWRIPNDFF--EVKAFLSTQMMDE 189

Query: 125 AVHSHTF 131
           A H+  F
Sbjct: 190 ARHTEVF 196


>gi|256377693|ref|YP_003101353.1| hypothetical protein Amir_3618 [Actinosynnema mirum DSM 43827]
 gi|255921996|gb|ACU37507.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
          Length = 315

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 18/193 (9%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ-YIITS 137
           R  + +   F   +E  V   +   +     N    ++   Q  +EA H+  F+ +II  
Sbjct: 69  RDALIQEFAFRTIAEEKVTRAL-GHLVAAAPNRVMTEFFSTQLLDEARHARVFRDHIIE- 126

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVV 195
           +G+ E E+ ++  EV         A +  +T+  P  +F         +F   +    ++
Sbjct: 127 VGVPEAEVDDVITEV---------AGKAIETVLDPLEAFGVSVIRDQGDFYGGVITLTIL 177

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+    G          +     AE  +    DE  HL+ G  VI +   E P    +
Sbjct: 178 VEGVLAPFGELSERKWVELD--PAGAEIERGAGMDEIRHLSVGSSVIKRHLQEQPGERMR 235

Query: 256 --EFQQKSRTMLH 266
             E  Q+ R +  
Sbjct: 236 VLELIQRGRALWE 248


>gi|254515463|ref|ZP_05127523.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219675185|gb|EED31551.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 441

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 38/221 (17%)

Query: 54  WMPTEV---PMQDDLALWKSKNGL-----TDDERLMIKRNLGFFASSESLVANNIVLA-I 104
           W P EV    + + L  ++    L     T DE  +                  +V + +
Sbjct: 109 W-PEEVRSPELMN-LHDYEPYLDLAMDEKTKDEFWLHMNAWSLSQFLHGEQGALLVASQL 166

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
                    + Y   Q F+EA H   F   +      +  +  MY     + +  +  L 
Sbjct: 167 CSCAPTLSAKLYAGSQTFDEARHVEVFNKYL------QKRIGVMYPINTHLKSIIDKIL- 219

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                            D  +        +V EG    + F              + +  
Sbjct: 220 ----------------TDPRWDLKFIGMQIVIEG-LALSAFNTT---RETTPDPVLKDVV 259

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
             + RDE+ H+ FG++ +            +E  Q +    
Sbjct: 260 YLVTRDEARHVTFGVNYLEDFLKTLSEEEIEERAQFAYEAC 300


>gi|149922477|ref|ZP_01910909.1| hypothetical protein PPSIR1_26928 [Plesiocystis pacifica SIR-1]
 gi|149816672|gb|EDM76164.1| hypothetical protein PPSIR1_26928 [Plesiocystis pacifica SIR-1]
          Length = 384

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 67/253 (26%), Gaps = 44/253 (17%)

Query: 74  LTDDERL--MIKRNLGFFAS-SESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129
           L+  E+            +             A +   +   + + Y   Q  +E  H  
Sbjct: 118 LSPKEQRELAYSVICWMLSQFLHGEQGALFAAAQVTEAVQFFDGKLYGATQVMDEGRHIE 177

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            F   +                            +  Q   +      +   D  +    
Sbjct: 178 VFTRYLD-----------------------QKLGRLYQINDNLFVILDSLMTDSRWDMKF 214

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKIE 248
               ++ EG      F  +  +     +    E  + +++DE+ H+++G+  +       
Sbjct: 215 LGTQIMIEG-LALGAFGVLYKVTGEPLLR---ELLRMVIQDEARHVHYGVLALREHFTKA 270

Query: 249 NPHLWTKEFQQKSRTML------HEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFI 299
                 +E +  +  +         A  +   +    M +         AP  + + Q +
Sbjct: 271 LSERERQEREDWAFEVALLMRNRFMAYEVYEEWFEGRMSREQWRQFITRAPGMKMFRQVM 330

Query: 300 ANRR---CHQIGL 309
            +R       IGL
Sbjct: 331 FSRLVPNLRAIGL 343


>gi|118383784|ref|XP_001025046.1| ARD/ARD' family protein [Tetrahymena thermophila]
 gi|89306813|gb|EAS04801.1| ARD/ARD' family protein [Tetrahymena thermophila SB210]
          Length = 400

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 58/185 (31%), Gaps = 22/185 (11%)

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +H+  + Y+  ++   +     + R V S +    W +                    ++
Sbjct: 188 IHAECYHYLFEAVVEMKKLGLEIPRTVSSSSQLRAWYIDENAIGQDGDIRESLHYRSYKW 247

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE---SLHLNFGIDVI 242
           +   ++  +  E                  ++  + +Q  Y  RD+     H      ++
Sbjct: 248 VNPEYLATIGVEHWKLDGE-------ENNTELERVCKQRNYSSRDQIKCGNHCENYQQML 300

Query: 243 NQIKIENPHLWTKEFQQKSRTML-----HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           +  + E+ HL      ++ R ++      +    E  +      KG + +       Y +
Sbjct: 301 SNFRKEHIHLD-----EEIRYIIGGSGYFDVRDHEDKWIRIQSVKGDLIVLPEGI--YHR 353

Query: 298 FIANR 302
           F  ++
Sbjct: 354 FTTDK 358


>gi|262196415|ref|YP_003267624.1| hypothetical protein Hoch_3229 [Haliangium ochraceum DSM 14365]
 gi|262079762|gb|ACY15731.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 408

 Score = 36.5 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 75/254 (29%), Gaps = 44/254 (17%)

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP----ECRQYLLRQAFEEAVHS 128
            L++ ER  +  ++  +  S+ L      L     ++      + + Y   Q  +E  H 
Sbjct: 133 RLSERERRQLLHSMAAWMLSQFLHGEQGALMAAAQVTEAVQFFDGKLYGSTQVVDEGRHV 192

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             F   + +                          +  Q   +          D  +   
Sbjct: 193 EVFHRYLDT-----------------------KLEKLYQINDNLFVIIDALMEDSRWDMK 229

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKI 247
                ++ EG      F  +    R   +    E  + +++DE+ H+++G+  +    + 
Sbjct: 230 FLGMQIMVEG-LALGAFGVLYQNTREPLLK---ELLRMVIQDEARHVHYGVLALREHFRE 285

Query: 248 ENPHLWTKEFQQKSRTML------HEATLLEIAYAHETMPKGF---VGLNAPSCEQYMQF 298
                   E +  +  +         A  +   +   +  +         +P  EQ+   
Sbjct: 286 ALSERERIEREDWAFEVALLMRNRFMAYEVYEEWFEGSFSRDQWRRFVAASPGFEQFRHV 345

Query: 299 IANRR---CHQIGL 309
           + NR      +IGL
Sbjct: 346 MFNRLVPNLREIGL 359


>gi|289642807|ref|ZP_06474944.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507376|gb|EFD28338.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
          Length = 348

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 16/164 (9%)

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITS----LGLDEGELFNMYREVPSITAKANWALQYTQ 167
           E RQ+L+   F + +H      I ++       D    F    +    T  A    ++ +
Sbjct: 73  ELRQHLMAWQFSQFLHGEQGAMICSARIVESVPDMDAKFYAATQTIDETRHAEIYSRFLR 132

Query: 168 TLSSPSFTTG--------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
                 +           T  +D  +        V+ EG+      A    L  A     
Sbjct: 133 EKIGLLYPINPELRSLLETTLSDSRWDMPYLGMQVLIEGL----ALAAFGVLRDAATAAL 188

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
             +   YIM+DE+ H+ FG   +     +       E ++    
Sbjct: 189 PKQILSYIMQDEARHVAFGRLALRDYYAQLSRRELDEREEFVVE 232


>gi|270158514|ref|ZP_06187171.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289166651|ref|YP_003456789.1| hypothetical protein LLO_3344 [Legionella longbeachae NSW150]
 gi|269990539|gb|EEZ96793.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288859824|emb|CBJ13805.1| hypothetical protein LLO_3344 [Legionella longbeachae NSW150]
          Length = 706

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +L+        A  E L    + +     + NPE ++ +  Q  +E  H+  F  II +L
Sbjct: 53  KLLYLYVFSLMAQLEVL-GIQLPMRFEDEMHNPELKKRMRAQLVDEIYHAIVFTKIIFTL 111

Query: 139 GLD--EGELFNMYREVPSITAKANWALQ 164
                    +N   E      +A   L+
Sbjct: 112 CAPYATPPAYNQEIERLCEFIRAQDCLK 139


>gi|170061542|ref|XP_001866278.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
 gi|167879742|gb|EDS43125.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
          Length = 501

 Score = 36.1 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT-EV 59
           MA NT  + +Q  E ++   D  +           P K+  +W  Y       W+P  + 
Sbjct: 374 MAENTDWNLVQLPEIKIAAIDNGLA---------FPFKHPDSWRAYPYHWA--WLPQAKN 422

Query: 60  PMQDDLAL 67
           P   D+  
Sbjct: 423 PFSQDIKD 430


>gi|34498114|ref|NP_902329.1| phenylacetic acid degradation protein paaA [Chromobacterium
           violaceum ATCC 12472]
 gi|34103969|gb|AAQ60329.1| probable phenylacetic acid degradation protein paaA
           [Chromobacterium violaceum ATCC 12472]
          Length = 259

 Score = 36.1 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV +       ++ + + D+ R  +   L      E    +  + + Y    + + R 
Sbjct: 22  PHEVSL-------ETIDSMPDEYRDTLIHQLLANGEGELSAGDTYIDSFYPLAPDADERY 74

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
              + A EE  H   F  ++  L +D                KA       +  ++ S T
Sbjct: 75  ICAQFAAEEVDHFRRFSRLLAELEVDTS--------HMLSQKKAE-----RRYFAAESMT 121

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           T  +  ++   +  F F    EG        QI  +  ++ +   AE  + ++++E+ H 
Sbjct: 122 TDFRSWEE---RAAFSFLCELEG------HYQIKEMVSSSYLPLRAEA-EAVLKEEARHF 171

Query: 236 NFGIDVINQIKIE 248
           + G  ++ +   +
Sbjct: 172 SHGALLMRRAAKD 184


>gi|54401380|gb|AAV34474.1| predicted ribonucleotide reductase, beta subunit [uncultured
           proteobacterium RedeBAC7D11]
          Length = 382

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 31/202 (15%)

Query: 68  WKSKNGLTDDERLMIK---RNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123
           +   N +++DE+  +       G            +V + +       + + Y   Q F+
Sbjct: 95  YPEYNDMSEDEKREVSWHASAWGLSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQCFD 154

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA H   F   +      +  +   Y   PS+ A  +  L                  D 
Sbjct: 155 EARHVEVFNRYL------QDVMGMSYPISPSLKALLDKGL-----------------TDP 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            +        ++ EG+      A   S   +     + +   Y++RDE+ H+ FGI+ + 
Sbjct: 192 RWDLKFIAMQIIIEGL----ALAAFQSTKMSTSCPLLRDLTHYVIRDEARHVTFGINYLE 247

Query: 244 QIKIENPHLWTKEFQQKSRTML 265
                      ++  + +    
Sbjct: 248 DFNKTLSEDEIEDRARFAYEAC 269


>gi|242017167|ref|XP_002429063.1| phosphatidylinositol 4-kinase type-II, putative [Pediculus humanus
           corporis]
 gi|212513927|gb|EEB16325.1| phosphatidylinositol 4-kinase type-II, putative [Pediculus humanus
           corporis]
          Length = 464

 Score = 36.1 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLAL 67
            P K+  +W  Y       W+P  ++P   D+  
Sbjct: 362 FPFKHPDSWRAYPYYWA--WLPQAKIPFSSDIRQ 393


>gi|310779320|ref|YP_003967653.1| Rubrerythrin [Ilyobacter polytropus DSM 2926]
 gi|309748643|gb|ADO83305.1| Rubrerythrin [Ilyobacter polytropus DSM 2926]
          Length = 183

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 57  TEVPMQDDLALWKSKNGLTD-----DERLMIKRNLGFFASSESLVANNIVL-AIYRHLSN 110
            E+    D+  W +++ L +     DE+ +I      F+   + V   + +  +      
Sbjct: 31  EEIKETGDMI-WATEHILGEGLACGDEQ-IIGDLRAHFSGECTEVGMYLAMSRVADREGY 88

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167
           PE  +   R AFEEA H+  F  ++  +  D  E      +  E  + + K + A +  Q
Sbjct: 89  PEVAEAYKRIAFEEAEHAAKFAELLGEVVTDSTEENLRRRVEAEYGATSGKFDIAKRAKQ 148

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
                   T   +  ++  +    F  + E
Sbjct: 149 LGFDAIHDT-VHEMAKDEARHGKAFKGLLE 177


>gi|157361605|gb|ABV44760.1| microvilli-like protein [Phlebotomus papatasi]
          Length = 225

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  +            +I   L +  + +  V       +Y +  + E ++   R
Sbjct: 35  DLHQDLQDFADLIPTNQ----VIGIVLSYIIT-DREVQE-----LYGYARSDEFKKLYER 84

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWAL 163
               EAVH      ++ S  L   +  N       +P    +    +
Sbjct: 85  AITSEAVHDLV--LLLESYNLPVIQTVNQIASLLSLPEYEPRNEDVI 129


>gi|222099571|ref|YP_002534139.1| Rubrerythrin [Thermotoga neapolitana DSM 4359]
 gi|221571960|gb|ACM22772.1| Rubrerythrin [Thermotoga neapolitana DSM 4359]
          Length = 156

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                  +      P+ +++    A +EA H+ TF+ I   LG+DE           ++ 
Sbjct: 18  GEEFYRKLAERFEKPDIKEFFSYMARQEAEHARTFESIGEELGVDE-------ETYLNLE 70

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF--EGMWFY 202
               +   + +    P   T  K   +  +++   F +    E + FY
Sbjct: 71  DAEEYLKSFVEGRFFPDAATMEKYLKERSVEEAIDFSISVEKETIIFY 118


>gi|82752473|ref|XP_727315.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483100|gb|EAA18880.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 329

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 17/191 (8%)

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--------EEAVHSHT 130
           +   K       S   +VA   +L +   +      + ++   F         E  +   
Sbjct: 32  KKCFKIITSGLNSQCKMVALECLLNLSAQIPTELIERNIVEILFDMIKEEEKNEENYIDM 91

Query: 131 FQYIITSL---------GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           +  II+++          LD  +   +Y    S++   N  L +     +PS      D 
Sbjct: 92  YIMIISNITRCKEGIYKILDISDEGQIYHNTFSVSYYLNKLLFFYFQPITPSINKNMSDK 151

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                  L     + E M F+   A +  L     ++     +   + + SLH +    +
Sbjct: 152 YMHISHILINISSIKESMPFFKNVAFLNKLSEQILILERCRTFLPFIMNLSLHKDIHDFI 211

Query: 242 INQIKIENPHL 252
                   P+L
Sbjct: 212 FQSDCNMFPYL 222


>gi|328713560|ref|XP_003245116.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
           [Acyrthosiphon pisum]
          Length = 62

 Score = 35.8 bits (81), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           + +++  A+    + G         +PF    E+   + + NFFE R
Sbjct: 8   KIHIEDFADGLLKESGFLQFTGRQTHPF---MELTSQQGKTNFFERR 51


>gi|297170317|gb|ADI21353.1| hypothetical protein [uncultured gamma proteobacterium
           HF0010_10D20]
          Length = 383

 Score = 35.8 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 28/202 (13%)

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123
           L  WK+ +     E    +                +V + I         + Y   Q F+
Sbjct: 96  LDAWKNLSDEEKIEFDRHETAELLCQFLHGEQGALLVASQIASCAPTYNAKLYAASQTFD 155

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA H   F   +                             +    ++          D+
Sbjct: 156 EARHVEVFNRYL-----------------------QEKIGFHYPVNANLKALLDKILTDE 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            +        V+ EG+      A   +L      V + +   Y++RDE+ H+ FGI+ + 
Sbjct: 193 RWDLKFIGMQVIIEGL----ALAAFTNLKLDTNCVLLKQLLHYVIRDEARHVTFGINYLE 248

Query: 244 QIKIENPHLWTKEFQQKSRTML 265
           +          ++  Q +    
Sbjct: 249 EYIKTLSPEEVEDRAQFAYEAC 270


>gi|297170339|gb|ADI21374.1| hypothetical protein [uncultured gamma proteobacterium
           HF0010_20H22]
          Length = 382

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 31/202 (15%)

Query: 68  WKSKNGLTDDERLMIK---RNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123
           +   N ++D+E+  +       G            +V + +       + + Y   Q F+
Sbjct: 95  YPEYNDMSDEEKREVSWHASAWGLSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQCFD 154

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA H   F   +      +  +   Y   PS+ A  +  L                  D 
Sbjct: 155 EARHVEVFNRYL------QDVMGMSYPISPSLKALLDKGL-----------------TDP 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            +        ++ EG+      A   S         + +   Y++RDE+ H+ FGI+ + 
Sbjct: 192 RWDLKFIAMQIIIEGL----ALAAFQSTKMTTSCPLLRDLTHYVIRDEARHVTFGINYLE 247

Query: 244 QIKIENPHLWTKEFQQKSRTML 265
                      ++  + +    
Sbjct: 248 DFNKTLSEDEIEDRARFAYEAC 269


>gi|118370720|ref|XP_001018560.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89300327|gb|EAR98315.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1319

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 6/199 (3%)

Query: 112 ECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
           E   + L   F   A++     + + SL       +   +      A      +  QTL 
Sbjct: 787 EATIFFLIIGFWLNAIYVQKLLFYLLSLFNPTKNRYGCKQAYEQFFADLLLVSKIFQTLQ 846

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
                   K      L    V  +   G +++               V ++    + + +
Sbjct: 847 ICKKGVDFKHFSDFQLFSYIVNGINNAGFFYFFSLEHSYKTLYVQGWVAVSFISLFAILN 906

Query: 231 ESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
               L     + + I  +        K  Q   +++L +    E  Y  E +    +   
Sbjct: 907 VFYQLYNLKRIFDFIFKDIHKNQFPQKNNQSPDQSILRKTLNQEQLYGIENIQDEIIQQA 966

Query: 289 APSCEQYMQFIANRRCHQI 307
               + Y++F+ N+R  ++
Sbjct: 967 D---KNYLEFLKNQRLQKL 982


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.139    0.408 

Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,343,259,136
Number of Sequences: 14124377
Number of extensions: 253915020
Number of successful extensions: 659379
Number of sequences better than 10.0: 2942
Number of HSP's better than 10.0 without gapping: 4098
Number of HSP's successfully gapped in prelim test: 1374
Number of HSP's that attempted gapping in prelim test: 638818
Number of HSP's gapped (non-prelim): 5787
length of query: 352
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 212
effective length of database: 2,865,380,850
effective search space: 607460740200
effective search space used: 607460740200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 82 (36.1 bits)